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Liu X, Wu C, Jiang D, Zhang Y, Chen Z. Biochar application regulates organic phosphorus fractions and the release of available phosphorus in farmland soil. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2024. [PMID: 39235277 DOI: 10.1002/jsfa.13863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Revised: 08/01/2024] [Accepted: 08/22/2024] [Indexed: 09/06/2024]
Abstract
BACKGROUND The relationship between phosphorus (P) related enzymatic activity and organic P turnover remains unclear, particularly in the context of biochar application. Field experiments were conducted on Phaeozem and Luvisol soil types to investigate the effects of biochar application rates - 0 t ha-1 (CK), 22.5 t ha-1 (D1), 67.5 t ha-1 (D2), and 112.5 t ha-1 (D3) - on soil organic fractions using 31P nuclear magnetic resonance (NMR) spectroscopy and relevant phosphatase activity. RESULTS The application of biochar increased the soil organic carbon (SOC), pyrophosphate (pyro), and orthophosphate (ortho) content, as well as the acid phosphomonoesterase (AcP), alkaline phosphomonoesterase (AlP), inorganic pyrophosphatase (IPP), and phosphodiesterase (PD) activities. Biochar application also increased soil organic P (OPa), the sum of inorganic P forms (IP), ortho, monoesters, and myo-IHP contents, the pH value, AlP and PD activities in Phaeozem, but it significantly reduced diesters, polyphosphate (poly) contents, and IPP and AcP activities compared to those in Luvisol. Acid phosphomonoesterase and PD activities also showed an opposite trend in Luvisol. The structural equation model showed that the potential mechanism of organic P turnover in response to biochar application differed depending on the soil types, potentially influenced by P availability. CONCLUSION Overall, the findings of this study enhance the comprehension of the variation of P fractions and their availability in the context of biochar application for agricultural production in northeastern China. © 2024 Society of Chemical Industry.
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Affiliation(s)
- Xing Liu
- Institute of applied Ecology, Chinese Academy of Sciences, Shenyang, China
| | - Chenran Wu
- Institute of applied Ecology, Chinese Academy of Sciences, Shenyang, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Dongqi Jiang
- Institute of applied Ecology, Chinese Academy of Sciences, Shenyang, China
- Key Lab of Conservation Tillage & Ecological Agriculture, Shenyang, China
- National Field Observation and Research Station of Shenyang Agro-ecosystems, Shenyang, China
| | - Yulan Zhang
- Institute of applied Ecology, Chinese Academy of Sciences, Shenyang, China
- Key Lab of Conservation Tillage & Ecological Agriculture, Shenyang, China
- National Field Observation and Research Station of Shenyang Agro-ecosystems, Shenyang, China
| | - Zhenhua Chen
- Institute of applied Ecology, Chinese Academy of Sciences, Shenyang, China
- Key Lab of Conservation Tillage & Ecological Agriculture, Shenyang, China
- National Field Observation and Research Station of Shenyang Agro-ecosystems, Shenyang, China
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Gai X, Xing W, Chen G. Divergent responses of rhizosphere soil phosphorus fractions and biological features of Salix psammophila to fertilization strategies under cadmium contamination. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 929:172554. [PMID: 38657824 DOI: 10.1016/j.scitotenv.2024.172554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Revised: 04/12/2024] [Accepted: 04/16/2024] [Indexed: 04/26/2024]
Abstract
Soil oligotrophy in areas heavily contaminated with heavy metals poses a significant challenge to vegetation establishment and phytoremediation processes. Phosphorus (P) cycling plays a critical role in global biogeochemical cycles, but there is limited understanding of its response to varying fertilization strategies and its correlation with phytoremediation effectiveness. This study primarily investigated the effects of various fertilization strategies, including nitrogen (N, 300 mg·kg-1), P (100 mg·kg-1), NP (combined N and P at 300 mg·kg-1 and 100 mg·kg-1, respectively), and HP (high P, 300 mg·kg-1) application, on rhizosphere soil P fractions and P-solubilizing microbial community (harboring phoD and phoC genes, respectively) of Salix psammophila under cadmium contamination. Application of NP significantly enhanced plant growth and cadmium accumulation, whereas HP inhibited cadmium bioaccumulation but promoted its translocation. Compared to untreated soil, N application promoted P cycling, leading to increases of 141.9 %, 60.4 %, and 10.3 % in Resin-Pi, diluted HCl-Pi, and conc.HCl-Pi, respectively. P application decreased organic phosphorus (Po) fractions by 24.4 % - 225.8 %, but N incorporation mitigated the declining trend in Po and augmented alkaline phosphatase activity. Fertilization strategies significantly regulated phoC- or phoD-harboring bacterial community structure, but their differential nutrient demands resulted in distinct responses. The phoD-harboring bacteria exhibited higher diversity and network complexity, with numerous biomarkers and fertilizer-sensitive OTUs discovered across treatments. Structural equation modeling (SEM) analysis indicated that phytoremediation efficiency was directly affected by Pi fractions, and phoD-harboring bacteria exhibited stronger associations with Pi fractions than phoC-harboring bacteria. In conclusion, our results reveal potential pathways through which fertilization strategies influence phytoremediation by affecting the structure of P-solubilizing microbial community. Furthermore, our study emphasizes the importance of combined N and P application in promoting Cd accumulation in plants, with high P levels appearing as an ideal fertilization strategy for phytoremediation targeting the harvest of aboveground biomass.
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Affiliation(s)
- Xu Gai
- Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, PR China
| | - Wenli Xing
- Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, PR China
| | - Guangcai Chen
- Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, PR China.
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Deng P, Zhou Y, Chen W, Tang F, Wang Y. Microbial mechanisms for improved soil phosphorus mobilization in monoculture conifer plantations by mixing with broadleaved trees. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 359:120955. [PMID: 38678896 DOI: 10.1016/j.jenvman.2024.120955] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Revised: 02/12/2024] [Accepted: 04/19/2024] [Indexed: 05/01/2024]
Abstract
Replanting broadleaved trees in monoculture conifer plantations has been shown to improve the ecological environment. However, not much is known about the distribution properties of soil phosphate-mobilizing bacteria (PMB) under different mixed plantings or how PMB affects biometabolism-driven phosphorus (P) bioavailability. The phoD and pqqC genes serve as molecular markers of PMB because they regulate the mobilization of organic (Po) and inorganic (Pi) P. Differences in soil bioavailable P concentration, phoD- and pqqC-harboring PMB communities, and their main regulators were analyzed using biologically-based P (BBP) and high-throughput sequencing approaches after combining coniferous trees (Pinus massoniana) and five individual broadleaved trees (Bretschneidera sinensis, Michelia maudiae, Cercidiphyllum japonicum, Manglietia conifera, and Camellia oleifera). The findings revealed that the contents of litter P, soil organic carbon (SOC), available Pi (CaCl2-P), and labile Po (Enzyme-P) were significantly higher in conifer-broadleaf mixed plantations than those in the monospecific Pinus massoniana plantations (PM), especially in the mixed stands with the introduction of Cercidiphyllum japonicum, Michelia maudiae, and Camellia oleifera. Conifer-broadleaf mixing had little effect on the abundance of phoD and pqqC genes but significantly altered species composition within the communities. Conifer-broadleaf mixing improved soil microbial habitat mainly by increasing the pH, increasing carbon source availability and nutrient content, decreasing exchangeable Fe3+ and Al3+ content, and decreasing the activation degrees of Fe and Al oxides in acidic soils. A small group of taxa (phoD: Bradyrhizobium, Tardiphaga, Nitratireductor, Mesorhizobium, Herbaspirillum, and Ralstonia; pqqC: Burkholderia, Variovorax, Bradyrhizobium, and Leptothrix) played a key role in the synthesis of P-related enzymes (e.g., alkaline phosphomonoesterase, ALP) and in lowering the levels of mineral-occluded (HCl-P) and chelated (Citrate-P) Pi. Overall, our findings highlight that mixing conifers and broadleaves could change the PMB communities that produce ALP and dissolve Pi to make P more bioavailable.
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Affiliation(s)
- Piaoyun Deng
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang 550025, PR China
| | - Yunchao Zhou
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang 550025, PR China.
| | - Wensha Chen
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang 550025, PR China
| | - Fenghua Tang
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang 550025, PR China
| | - Yaoxiong Wang
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang 550025, PR China
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4
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Sun Y, Cheng Y, Li H, Liu X, Zhang Y, Ren X, Wu D, Wang F. Organic phosphorus levels change the hyphosphere phoD-harboring bacterial community of Funneliformis mosseae. MYCORRHIZA 2024; 34:131-143. [PMID: 38129688 DOI: 10.1007/s00572-023-01132-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Accepted: 12/06/2023] [Indexed: 12/23/2023]
Abstract
The phoD-harboring bacterial community is responsible for organic phosphorus (P) mineralization in soil and is important for understanding the interactions between arbuscular mycorrhizal (AM) fungi and phosphate-solubilizing bacteria (PSB) at the community level for organic P turnover. However, current understanding of the phoD-harboring bacterial community associated with AM fungal hyphae responses to organic P levels remains incomplete. Here, two-compartment microcosms were used to explore the response of the phoD-harboring bacterial community in the hyphosphere to organic P levels by high-throughput sequencing. Extraradical hyphae of Funneliformis mosseae enriched the phoD-harboring bacterial community and organic P levels significantly altered the composition of the phoD-harboring bacterial community in the Funneliformis mosseae hyphosphere. The relative abundance of dominant families Pseudomonadaceae and Burkholderiaceae was significantly different among organic P treatments and were positively correlated with alkaline phosphatase activity and available P concentration in the hyphosphere. Furthermore, phytin addition significantly decreased the abundance of the phoD gene, and the latter was significantly and negatively correlated with available P concentration. These findings not only improve the understanding of how organic P influences the phoD-harboring bacterial community but also provide a new insight into AM fungus-PSB interactions at the community level to drive organic P turnover in soil.
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Affiliation(s)
- Yaqin Sun
- School of Resource and Environmental Sciences, Henan Institute of Science and Technology, Xinxiang, 453003, China
| | - Yanan Cheng
- School of Resource and Environmental Sciences, Henan Institute of Science and Technology, Xinxiang, 453003, China
| | - Hang Li
- School of Resource and Environmental Sciences, Henan Institute of Science and Technology, Xinxiang, 453003, China
| | - Xing Liu
- School of Resource and Environmental Sciences, Henan Institute of Science and Technology, Xinxiang, 453003, China
| | - Ying Zhang
- School of Resource and Environmental Sciences, Henan Institute of Science and Technology, Xinxiang, 453003, China
| | - Xiujuan Ren
- School of Resource and Environmental Sciences, Henan Institute of Science and Technology, Xinxiang, 453003, China
| | - Dafu Wu
- School of Resource and Environmental Sciences, Henan Institute of Science and Technology, Xinxiang, 453003, China
| | - Fei Wang
- School of Resource and Environmental Sciences, Henan Institute of Science and Technology, Xinxiang, 453003, China.
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5
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Xie X, Liu Y, Chen G, Turatsinze AN, Yue L, Ye A, Zhou Q, Wang Y, Zhang M, Zhang Y, Li Z, Tran LSP, Wang R. Granular bacterial inoculant alters the rhizosphere microbiome and soil aggregate fractionation to affect phosphorus fractions and maize growth. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:169371. [PMID: 38104809 DOI: 10.1016/j.scitotenv.2023.169371] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 11/30/2023] [Accepted: 12/12/2023] [Indexed: 12/19/2023]
Abstract
The constraint of phosphorus (P) fixation on crop production in alkaline calcareous soils can be alleviated by applying bioinoculants. However, the impact of bacterial inoculants on this process remains inadequately understood. Here, a field study was conducted to investigate the effect of a high-concentration, cost-effective, and slow-release granular bacterial inoculant (GBI) on maize (Zea mays L.) plant growth. Additionally, we explored the effects of GBI on rhizosphere soil aggregate physicochemical properties, rhizosphere soil P fraction, and microbial communities within aggregates. The outcomes showed a considerable improvement in plant growth and P uptake upon application of the GBI. The application of GBI significantly enhanced the AP, phoD gene abundance, alkaline phosphatase activity, inorganic P fractions, and organic P fractions in large macroaggregates. Furthermore, GBI impacted soil aggregate fractionation, leading to substantial alterations in the composition of fungal and bacterial communities. Notably, key microbial taxa involved in P-cycling, such as Saccharimonadales and Mortierella, exhibited enrichment in the rhizosphere soil of plants treated with GBI. Overall, our study provides valuable insight into the impact of GBI application on microbial distributions and P fractions within aggregates of alkaline calcareous soils, crucial for fostering healthy root development and optimal crop growth potential. Subsequent research endeavors should delve into exploring the effects of diverse GBIs and specific aggregate types on P fraction and community composition across various soil profiles.
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Affiliation(s)
- Xiaofan Xie
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Gansu Gaolan Field Scientific Observation and Research Station for Agricultural Ecosystem, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yang Liu
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Gansu Gaolan Field Scientific Observation and Research Station for Agricultural Ecosystem, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Gaofeng Chen
- Gansu Shangnong Biotechnology Co. Ltd, Baiyin 730900, China
| | - Andéole Niyongabo Turatsinze
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Gansu Gaolan Field Scientific Observation and Research Station for Agricultural Ecosystem, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Liang Yue
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ailing Ye
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Gansu Gaolan Field Scientific Observation and Research Station for Agricultural Ecosystem, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qin Zhou
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Gansu Gaolan Field Scientific Observation and Research Station for Agricultural Ecosystem, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yun Wang
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Meilan Zhang
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; General Station of Gansu Cultivated Land Quality Construction and Protection, Lanzhou 730020, China
| | - Yubao Zhang
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Gansu Gaolan Field Scientific Observation and Research Station for Agricultural Ecosystem, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhongping Li
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Lam-Son Phan Tran
- Institute of Genomics for Crop Abiotic Stress Tolerance, Department of Plant and Soil Science, Texas Tech University, Lubbock, TX 79409, USA
| | - Ruoyu Wang
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Gansu Gaolan Field Scientific Observation and Research Station for Agricultural Ecosystem, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; University of Chinese Academy of Sciences, Beijing 100049, China.
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6
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Wang L, Zhang H, Xu C, Yuan J, Xu X, Wang J, Zhang Y. Long-term nitrogen fertilization and sweetpotato cultivation in the wheat-sweetpotato rotation system decrease alkaline phosphomonoesterase activity by regulating soil phoD-harboring bacteria communities. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 900:165916. [PMID: 37524185 DOI: 10.1016/j.scitotenv.2023.165916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 07/27/2023] [Accepted: 07/28/2023] [Indexed: 08/02/2023]
Abstract
The alkaline phosphomonoesterase (ALP)-harboring community (phoD-harboring community) plays a crucial role in the conversion of organic phosphorus (P) into available P (AP). However, the response mechanisms of phoD-harboring communities to fertilization strategies, crop types, and their interactions within the wheat-sweetpotato rotation are poorly understood. A nine-year field experiment of different fertilization strategies was established under the wheat-sweetpotato rotation. After harvesting the crop, we collected soil samples without fertilization (CK), inorganic NK fertilization (NK), inorganic NPK fertilization (NPK), and a combined application of inorganic NPK and organic fertilizer (NPKM). We employed high-throughput sequencing and enzymology techniques to analyze the composition and functional activity of phoD-harboring bacterial communities as well as their correlation with soil physicochemical properties. The results showed that long-term nitrogen (N) fertilization, especially inorganic N, significantly reduced soil pH and ALP activity while increasing AP compared with CK. The AP content in sweetpotato season was significantly higher than that in wheat season. Inorganic N fertilization dramatically reshaped the communities of phoD-harboring bacteria and decreased diversity. The phoD-harboring bacterial communities in sweetpotato season were significantly different from those in wheat season. The N fertilization significantly reduced the relative abundance of Acuticoccus, Methylibium, Rhizobacter, and Roseivivax, which was positively correlated with ALP activity. These groups in sweetpotato season decreased significantly compared with wheat season. A structural equation model indicates that pH and AP play a significant role in regulating the phoD-harboring bacteria communities, ALP activity, and their interactions. We demonstrate that fertilization strategies and crop types have a substantial impact on the phoD-harboring bacteria communities and functions, which are closely linked to soil pH and AP levels. Our study highlights the detrimental effects of soil acidification resulting from inorganic N fertilization on P-cycling bacterial communities and functions. However, the combination of inorganic and organic fertilizer can mitigate these adverse effects.
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Affiliation(s)
- Lei Wang
- National Agricultural Experimental Station for Agricultural Environment, Luhe, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - Hui Zhang
- National Agricultural Experimental Station for Agricultural Environment, Luhe, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; Jiangsu University, Zhenjiang 212023, China
| | - Cong Xu
- National Agricultural Experimental Station for Agricultural Environment, Luhe, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; Jiangsu University, Zhenjiang 212023, China
| | - Jie Yuan
- National Agricultural Experimental Station for Agricultural Environment, Luhe, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - Xianjü Xu
- National Agricultural Experimental Station for Agricultural Environment, Luhe, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - Jidong Wang
- National Agricultural Experimental Station for Agricultural Environment, Luhe, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; Jiangsu University, Zhenjiang 212023, China.
| | - Yongchun Zhang
- National Agricultural Experimental Station for Agricultural Environment, Luhe, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; Jiangsu University, Zhenjiang 212023, China.
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Guo L, Yu Z, Li Y, Xie Z, Wang G, Liu J, Hu X, Wu J, Liu X, Jin J. Stimulation of primed carbon under climate change corresponds with phosphorus mineralization in the rhizosphere of soybean. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 899:165580. [PMID: 37467990 DOI: 10.1016/j.scitotenv.2023.165580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 07/14/2023] [Accepted: 07/15/2023] [Indexed: 07/21/2023]
Abstract
Elevated CO2 and temperature likely alter photosynthetic carbon inputs to soils, which may stimulate soil microbial activity to accelerate the decomposition of soil organic carbon (SOC), liberating more phosphorus (P) into the soil solution. However, this hypothesis on the association of SOC decomposition and P transformation in the plant rhizosphere requires robust soil biochemical evidence, which is critical to nutrient management for the mitigation of soil quality against climate change. This study investigated the microbial functional genes relevant to P mineralization together with priming processes of SOC in the rhizosphere of soybean grown under climate change. Soybean plants were grown under elevated CO2 (eCO2, 700 ppm) combined with warming (+ 2 °C above ambient temperature) in open-top chambers. Photosynthetic carbon flow in the plant-soil continuum was traced with 13CO2 labeling. The eCO2 plus warming treatment increased the primed carbon (C) by 43 % but decreased the NaHCO3-extratable organic P by 33 %. Furthermore, NaHCO3-Po was negatively correlated with phosphatase activity and microbial biomass C. Elevated CO2 increased the abundances of C degradation genes, such as abfA and ManB, and P mineralization genes, such as gcd, phoC and phnK. The results suggested that increased photosynthetic carbon inputs to the rhizosphere of plants under eCO2 plus warming stimulated the microbial population and metabolic functions of both SOC and organic P mineralization. There is a positive relationship between the rhizosphere priming effect and P mineralization. The response of microorganisms to plant-C flow is decisive for coupled C and P cycles, which are likely accelerated under climate change.
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Affiliation(s)
- Lili Guo
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China; Institute of Geographical, Henan Academy of Sciences, 64 Longhai Road, Zhengzhou 450052, China
| | - Zhenhua Yu
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Yansheng Li
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Zhihuang Xie
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Guanghua Wang
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Junjie Liu
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Xiaojing Hu
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Junjiang Wu
- Key Laboratory of Soybean Cultivation of Ministry of Agriculture, Soybean Research Institute, Heilongjiang Academy of Agricultural Sciences, Harbin, China
| | - Xiaobing Liu
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Jian Jin
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China; Key Laboratory of Soybean Cultivation of Ministry of Agriculture, Soybean Research Institute, Heilongjiang Academy of Agricultural Sciences, Harbin, China; Department of Animal, Plant and Soil Sciences, Centre for AgriBioscience, La Trobe University, Melbourne Campus, Bundoora, Vic 3086, Australia.
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Wang L, Wang J, Yuan J, Tang Z, Wang J, Zhang Y. Long-Term Organic Fertilization Strengthens the Soil Phosphorus Cycle and Phosphorus Availability by Regulating the pqqC- and phoD-Harboring Bacterial Communities. MICROBIAL ECOLOGY 2023; 86:2716-2732. [PMID: 37528183 DOI: 10.1007/s00248-023-02279-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Accepted: 07/26/2023] [Indexed: 08/03/2023]
Abstract
The pqqC and phoD genes encode pyrroloquinoline quinone synthase and alkaline phosphomonoesterase (ALP), respectively. These genes play a crucial role in regulating the solubilization of inorganic phosphorus (Pi) and the mineralization of organic phosphorus (Po), making them valuable markers for P-mobilizing bacterial. However, there is limited understanding of how the interplay between soil P-mobilizing bacterial communities and abiotic factors influences P transformation and availability in the context of long-term fertilization scenarios. We used real-time polymerase chain reaction and high-throughput sequencing to explore the characteristics of soil P-mobilizing bacterial communities and their relationships with key physicochemical properties and P fractions under long-term fertilization scenarios. In a 38-year fertilization experiment, six fertilization treatments were selected. These treatments were sorted into three groups: the non-P-amended group, including no fertilization and mineral NK fertilizer; the sole mineral-P-amended group, including mineral NP and NPK fertilizer; and the organically amended group, including sole organic fertilizer and organic fertilizer plus mineral NPK fertilizer. The organically amended group significantly increased soil labile P (Ca2-P and enzyme-P) and Olsen-P content and proportion but decreased non-labile P (Ca10-P) proportion compared with the sole mineral-P-amended group, indicating enhanced P availability in the soil. Meanwhile, the organically amended group significantly increased soil ALP activity and pqqC and phoD gene abundances, indicating that organic fertilization promotes the activity and abundance of microorganisms involved in P mobilization processes. Interestingly, the organically amended group dramatically reshaped the community structure of P-mobilizing bacteria and increased the relative abundance of Acidiphilium, Panacagrimonas, Hansschlegelia, and Beijerinckia. These changes had a greater positive impact on ALP activity, labile P, and Olsen-P content compared to the abundance of P-mobilizing genes alone, indicating their importance in driving P mobilization processes. Structural equation modeling indicated that soil organic carbon and Po modulated the relationship between P-mobilizing bacterial communities and labile P and Olsen-P, highlighting the influence of SOC and Po on the functioning of P-mobilizing bacteria and their impact on P availability. Overall, our study demonstrates that organic fertilization has the potential to reshape the structure of P-mobilizing bacterial communities, leading to increased P mobilization and availability in the soil. These findings contribute to our understanding of the mechanisms underlying P cycling in agricultural systems and provide valuable insights for enhancing microbial P mobilization through organic fertilization.
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Affiliation(s)
- Lei Wang
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences/National Agricultural Experimental Station for Agricultural Environment, Luhe, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China
| | - Jing Wang
- Xuzhou Institute of Agricultural Sciences of Xuhuai District of Jiangsu Province, Xuzhou, 221131, China
| | - Jie Yuan
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences/National Agricultural Experimental Station for Agricultural Environment, Luhe, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China
| | - Zhonghou Tang
- Xuzhou Institute of Agricultural Sciences of Xuhuai District of Jiangsu Province, Xuzhou, 221131, China
| | - Jidong Wang
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences/National Agricultural Experimental Station for Agricultural Environment, Luhe, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China.
| | - Yongchun Zhang
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences/National Agricultural Experimental Station for Agricultural Environment, Luhe, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China.
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Li S, Wang N, Chen S, Sun Y, Li P, Tan J, Jiang X. Enhanced soil P immobilization and microbial biomass P by application of biochar modified with eggshell. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 345:118568. [PMID: 37421718 DOI: 10.1016/j.jenvman.2023.118568] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Revised: 06/30/2023] [Accepted: 07/01/2023] [Indexed: 07/10/2023]
Abstract
Phosphate fertilizers have been excessively applied in agricultural production, bringing the risk of phosphorus (P) loss to nearby river systems and low utilization efficiency. In this study, eggshell-modified biochars prepared by pyrolysis of eggshell and corn straw or pomelo peel were applied to soil for enhancing P immobilization and utilization. The structure and properties of modified biochars before and after P adsorption were analyzed using the Brunauer-Emmett-Teller (BET) nitrogen adsorption method, Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), X-ray photoelectron spectroscopy (XPS), and scanning electron microscope (SEM). The eggshell-modified biochar performed an excellent adsorption performance for P (up to 200 mg/g), which was well described by the Langmuir model (R2 > 0.969), showing monolayer chemical adsorption with homogenous surface. The Ca(OH)2 appeared on the surface of eggshell modified biochars and changed to Ca5(PO4)3(OH) and CaHPO4(H2O)2 after P adsorption. The release of immobilized P by modified biochar increased with decreased pH. In addition, pot experiments of soybean indicated that the combined application of modified biochar and P fertilizer significantly increased the content of microbial biomass P in soil, raising from 4.18 mg/kg (control group) to 51.6-61.8 mg/kg (treatment group), and plants height increased by 13.8-26.7%. Column leaching experiments showed that P concentration in the leachate decreased by 97.9% with the modified biochar application. This research provides a new perspective that the eggshell-modified biochar could serve as a potential soil amendment for enhancing P immobilization and utilization.
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Affiliation(s)
- Shuangchi Li
- School of Agriculture, Sun Yat-sen University, Guangzhou, Guangdong, 510275, PR China
| | - Ning Wang
- School of Agriculture, Sun Yat-sen University, Guangzhou, Guangdong, 510275, PR China
| | - Shuiqing Chen
- School of Agriculture, Sun Yat-sen University, Guangzhou, Guangdong, 510275, PR China
| | - Yuqing Sun
- School of Agriculture, Sun Yat-sen University, Guangzhou, Guangdong, 510275, PR China
| | - Puwang Li
- South Subtropical Crop Research Institute, China Academy of Tropical Agricultural Sciences, Zhanjiang, Guangdong, 524091, PR China.
| | - Jinfang Tan
- School of Agriculture, Sun Yat-sen University, Guangzhou, Guangdong, 510275, PR China
| | - Xiaoqian Jiang
- School of Agriculture, Sun Yat-sen University, Guangzhou, Guangdong, 510275, PR China.
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10
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Khan A, Zhang G, Li T, He B. Fertilization and cultivation management promotes soil phosphorus availability by enhancing soil P-cycling enzymes and the phosphatase encoding genes in bulk and rhizosphere soil of a maize crop in sloping cropland. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 264:115441. [PMID: 37677974 DOI: 10.1016/j.ecoenv.2023.115441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2023] [Revised: 08/29/2023] [Accepted: 09/03/2023] [Indexed: 09/09/2023]
Abstract
Fertilization and cultivation managements exert significant effects on crop growth and soil-associated nutrients in croplands. However, there is a lack of knowledge regarding how these practices affect soil phosphorus-cycling enzymes and functional genes involved in regulating global P-cycling, especially under intense agricultural management practices in sloping croplands. A long-term field (15-year) trial was conducted in a 15° sloping field based on five treatments: no fertilizer amendments + downslope cultivation (CK); mixed treatment of mineral fertilizer and organic manure + downslope cultivation (T1); mineral fertilizer alone + downslope cultivation (T2); 1.5-fold mineral fertilizer + downslope cultivation (T3); and mineral fertilizer + contour cultivation (T4). Bulk and rhizosphere soil samples were collected after the maize crop was harvested to determine the P fraction, P-cycling enzymes, and phosphatase-encoding genes. Results indicated that fertilization management significantly increased the inorganic (Pi) and organic soil (Po) P fractions compared to CK, except for NaOH-extractable Po in T1 and T3 in bulk and rhizosphere soils, respectively. For the cultivation treatments, the content of Pi pools in the downslope cultivation of T1 and T3 was significantly larger than that in the contour cultivation of T4 in bulk and rhizosphere soils. However, the content of NaOH-extractable Po in T1 and T3 was lower compared to T4 in bulk soil and vice versa for the NaHCO3-P and HCl-Po fractions in the rhizosphere. We also found that fertilization and cultivation managements significantly increased the activity of acid phosphatase (ACP), alkaline phosphatase (ALP), phytase, phosphodiesterases (PDE), and phoC and phoD gene abundance in bulk and rhizosphere soils, with a larger effect on the activity of ALP and the phosphatase encoding phoD gene, especially in T1 and T3 in the rhizosphere. Soil organic carbon (SOC) and microbial biomass C and P (MBC and MBP) were the main predictors for regulating P-cycling enzymes and phoC- and phoD gene abundance. A strong association of P-cycling enzymes, especially ALP and phytase, and the abundance of phoD genes with the P fraction indicated that the soil P cycle was mainly mediated by microbial-related processes. Together, our results demonstrated that an adequate amount of mineral fertilizer alone or combined with organic fertilizer plus downslope cultivation is more effective in promoting soil P availability by enhancing the activity of ALP, phytase, and phoD genes. This provides valuable information for sustaining soil microbial-regulated P management practices in similar agricultural lands worldwide.
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Affiliation(s)
- Asif Khan
- College of Resources and Environment, Southwest University, Beibei District, Chongqing 400715, China
| | - Gaoning Zhang
- College of Resources and Environment, Southwest University, Beibei District, Chongqing 400715, China
| | - Tianyang Li
- College of Resources and Environment, Southwest University, Beibei District, Chongqing 400715, China
| | - Binghui He
- College of Resources and Environment, Southwest University, Beibei District, Chongqing 400715, China.
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11
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Zhang T, Wang J, Zhou S, Chen Y, Li D. Spatio-temporal dynamic diversity of bacterial alkaline phosphatase phoD gene and its environmental drivers in sediments during algal blooms: A case study of shallow Lake Taihu. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 336:117595. [PMID: 36871452 DOI: 10.1016/j.jenvman.2023.117595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 02/13/2023] [Accepted: 02/24/2023] [Indexed: 06/18/2023]
Abstract
Bacterial alkaline phosphatase encoded by the phoD gene is essential for phosphorus (P) cycling in ecosystems. Until now, knowledge of the phoD gene diversity in shallow lake sediments is still lacking. In this study, from early to late stage of cyanobacterial blooms, we investigated the dynamic changes of the abundance of phoD gene (hereafter phoD abundance) and phoD-harboring bacterial community composition (hereafter phoD-harboring BCC) in sediments from different ecological regions of Lake Taihu, the third-largest shallow freshwater lake in China, as well as explored their environmental driving factors. Results showed that phoD abundance in the sediments of Lake Taihu showed spatiotemporal heterogeneity. The highest abundance was found in macrophyte-dominated area (mean 3.25*106copies/g DW), where Haliangium and Aeromicrobium were identified as the major contributors. Due to the negative impact of Microcystis species, phoD abundance decreased significantly (by 40.28% on average) during cyanobacterial blooms in all other regions except the estuary area. The phoD abundance in sediment was positively correlated with total organic carbon (TOC) and total nitrogen (TN). However, the relationship between phoD abundance and alkaline phosphatase activity (APA) varied with time, showing positive correlation (R2 = 0.763, P < 0.01) in the early stage of cyanobacterial blooms, but not (R2 = -0.052, P = 0.838) in the later stage. The predominant phoD-harboring genera in sediments were Kribbella, Streptomyces and Lentzea, all of which belong to Actinobacteria. Non-metric multidimensional scaling (NMDS) analysis revealed that the spatial heterogeneity of phoD-harboring BCC in the sediments of Lake Taihu was significantly higher than the temporal heterogeneity. TP and sand were the principle environmental factors affecting the phoD-harboring BCC in the sediments of the estuary area, while DO, pH, organic phosphorus (Po) and diester phosphorus were the key driving factors for other lake regions. We concluded that the C, N, and P cycles in sediments might work in concert. This study extends the understanding of the phoD gene diversity in shallow lake sediments.
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Affiliation(s)
- Tingxi Zhang
- School of Environment, Jiangsu Province Engineering Research Center of Environmental Risk Prevention and Emergency Response Technology, Nanjing Normal University, Nanjing, 210023, China; Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, School of Geography Science, Nanjing Normal University, Nanjing, 210023, China.
| | - Jiaying Wang
- School of Environment, Jiangsu Province Engineering Research Center of Environmental Risk Prevention and Emergency Response Technology, Nanjing Normal University, Nanjing, 210023, China.
| | - Siqi Zhou
- School of Remote Sensing and Geomatics Engineering, Nanjing University of Information Science and Technology, Nanjing, 210044, China.
| | - Youling Chen
- School of Environment, Jiangsu Province Engineering Research Center of Environmental Risk Prevention and Emergency Response Technology, Nanjing Normal University, Nanjing, 210023, China.
| | - Defang Li
- School of Environment, Jiangsu Province Engineering Research Center of Environmental Risk Prevention and Emergency Response Technology, Nanjing Normal University, Nanjing, 210023, China.
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12
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Hussain A, Jamil MA, Abid K, Chen L, Khan K, Duan W, Alam T, Riaz U. Variations in soil phosphorus fractionations in different water-stable aggregates under litter and inorganic fertilizer treatment in Korean pine plantation and its natural forest. Heliyon 2023; 9:e17261. [PMID: 37389077 PMCID: PMC10300375 DOI: 10.1016/j.heliyon.2023.e17261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Revised: 05/31/2023] [Accepted: 06/12/2023] [Indexed: 07/01/2023] Open
Abstract
Soil aggregation in forest ecosystem is considered as a significant physical process mainly influenced by manure, fertilizers or combination. This aggregation may directly alter the soil nutrient and their fractions in soil. So, soil samples were collected from two types of forests i.e. Natural Korean pine forests (NKPF) and Korean pine plantation (KPP) in order to know the quantities of organic and inorganic Phosphorus (P) amounts in different aggregate sizes viz. >5 mm, 2-5 mm, 0.25-2 mm, <0.25 mm under forest litter and synthetic fertilizer application below the treatments as undisturbed soil (CK), removed litter (RL), altered litter (AL) while the fertilizer treatments were as control; C: (No added N and P,), L: low (5 g N m-2 a-1 + 5 g P m-2 a-1), M: medium (15 g N m-2 a-1 + 10 g P m-2 a-1) and H: high concentration (30 g N m-2 a-1 + 20 g P m-2 a-1), respectively. The results showed that H2O-Pi, NaHCO3-Pi, Residual Pi, SOC were highest retained in larger soil aggregates (>5 mm) and decreased with the decreasing aggregate size, while other variables, i.e., NaOH-Pi, NaHCO3-Po, pH and T-N were not affected in aggregate size. H2O-Pi (48 ppm), NaHCO3-Pi (68 ppm), NaHCO3-Po (80 ppm), NaOH-Po (623 ppm), HCL-Po (67 ppm), SOC (20.36 ± 1.6) was estimated in medium fertilizer treatment. PCA analysis showed that spread/variance of data points on F1 (62.90%) is more than spread/variance of data points on F2 (57.74%) in NKPF and KPP, respectively, while correlation matrix showed high correlation between H2O-Pi and NaOH-Pi (0.63) and H2O-Pi and NaHCO3-Pi (0.63) while a strong negative correlation was present between Res-Pi and Po (-0.61). Moreover, litter inputs increased the organic-P fractions in soil particularly at medium treatment.
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Affiliation(s)
- Anwaar Hussain
- School of Forestry, Northeast Forestry University, Harbin 150040, China
- Key Laboratory of Sustainable Forest Ecosystem Management, Ministry of Education, Northeast Forestry University, Harbin 150040, China
| | - Muhammad Atif Jamil
- School of Forestry, Northeast Forestry University, Harbin 150040, China
- Key Laboratory of Sustainable Forest Ecosystem Management, Ministry of Education, Northeast Forestry University, Harbin 150040, China
| | - Kulsoom Abid
- Department of Natural Resource Management (NRM), National Agricultural Research Center (NARC), Islamabad 44000, Pakistan
| | - Lixin Chen
- School of Forestry, Northeast Forestry University, Harbin 150040, China
- Key Laboratory of Sustainable Forest Ecosystem Management, Ministry of Education, Northeast Forestry University, Harbin 150040, China
| | - Kashif Khan
- School of Forestry, Northeast Forestry University, Harbin 150040, China
- Key Laboratory of Sustainable Forest Ecosystem Management, Ministry of Education, Northeast Forestry University, Harbin 150040, China
| | - Wenbiao Duan
- School of Forestry, Northeast Forestry University, Harbin 150040, China
- Key Laboratory of Sustainable Forest Ecosystem Management, Ministry of Education, Northeast Forestry University, Harbin 150040, China
| | - Tajwar Alam
- Institute of Soil and Environmental Sciences, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi 46300, Pakistan
| | - Umair Riaz
- Department of Soil & Environmental Sciences, MNS University of Agriculture, Multan-60000, Pakistan
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Li H, Ding J, Zhu L, Xu F, Li W, Yao Y, Cui L. Single-cell Raman and functional gene analyses reveal microbial P solubilization in agriculture waste-modified soils. MLIFE 2023; 2:190-200. [PMID: 38817623 PMCID: PMC10989763 DOI: 10.1002/mlf2.12053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 12/01/2022] [Accepted: 12/06/2022] [Indexed: 06/01/2024]
Abstract
Application of agricultural waste such as rapeseed meal (RM) is regarded as a sustainable way to improve soil phosphorus (P) availability by direct nutrient supply and stimulation of native phosphate-solubilizing microorganisms (PSMs) in soils. However, exploration of the in situ microbial P solubilizing function in soils remains a challenge. Here, by applying both phenotype-based single-cell Raman with D2O labeling (Raman-D2O) and genotype-based high-throughput chips targeting carbon, nitrogen and P (CNP) functional genes, the effect of RM application on microbial P solubilization in three typical farmland soils was investigated. The abundances of PSMs increased in two alkaline soils after RM application identified by single-cell Raman D2O. RM application reduced the diversity of bacterial communities and increased the abundance of a few bacteria with reported P solubilization function. Genotypic analysis indicated that RM addition generally increased the relative abundance of CNP functional genes. A correlation analysis of the abundance of active PSMs with the abundance of soil microbes or functional genes was carried out to decipher the linkage between the phenotype and genotype of PSMs. Myxococcota and C degradation genes were found to potentially contribute to the enhanced microbial P release following RM application. This work provides important new insights into the in situ function of soil PSMs. It will lead to better harnessing of agricultural waste to mobilize soil legacy P and mitigate the P crisis.
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Affiliation(s)
- Hongzhe Li
- Key Lab of Urban Environment and HealthInstitute of Urban Environment, Chinese Academy of SciencesXiamenChina
| | - Jiazhi Ding
- Key Lab of Urban Environment and HealthInstitute of Urban Environment, Chinese Academy of SciencesXiamenChina
- College of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
- University of Chinese Academy of SciencesBeijingChina
| | - Longji Zhu
- Key Lab of Urban Environment and HealthInstitute of Urban Environment, Chinese Academy of SciencesXiamenChina
| | - Fei Xu
- Key Lab of Urban Environment and HealthInstitute of Urban Environment, Chinese Academy of SciencesXiamenChina
- College of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
- University of Chinese Academy of SciencesBeijingChina
| | - Wenjing Li
- Key Lab of Urban Environment and HealthInstitute of Urban Environment, Chinese Academy of SciencesXiamenChina
- University of Chinese Academy of SciencesBeijingChina
| | - Yanpo Yao
- Agro‐Environmental Protection InstituteMinistry of Agriculture and Rural AffairsTianjinChina
| | - Li Cui
- Key Lab of Urban Environment and HealthInstitute of Urban Environment, Chinese Academy of SciencesXiamenChina
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14
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Yuan H, Cai Y, Wang H, Liu E, Li Q, Zeng Q. How phoD-harboring functional microbial populations trigger the release risk of phosphorus in water sediment system of Shijiuhu Lake, China after experiencing the transseasonal shift. WATER RESEARCH 2023; 240:120107. [PMID: 37244018 DOI: 10.1016/j.watres.2023.120107] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 05/05/2023] [Accepted: 05/20/2023] [Indexed: 05/29/2023]
Abstract
Excessive phosphorus (P) enrichment is the critical cause of eutrophication in the lake water. Organic P (Po) mineralization processes induced by alkaline phosphatase (APase) regulated by phoD-encoding microorganisms in the lake ecosystems was still ambiguous due to the transseasonal shift of water temperatures and depths. Different P pools in the water and sediments of Shijiuhu Lake at varied seasons were measured using chemical extraction methods and solution 31P NMR. The alkaline phosphatase activity (APA) in the sediments were assessed together with enzyme kinetic parameters. The abundances and compositions of microbial communities encoding functional gene phoD were also obtained using high-throughput sequencing. The results showed that Po concentrations remarkably increased from winter toward spring when having higher water depths due to the terrigenous input and biomass deposition. Noteworthy elevation in the PO43- concentration was observed in the interstitial water during the spring, particularly at around 5 cm sediment depth with value reaching as high as 0.43 mg/L. The degradation and mineralization of momoesters and diesters with higher concentrations in the sediments of spring aggravated the PO43- load in the interstitial water. Higher APA reaching 91.6 μg/(g·h) in spring was responsible for the mineralization of Po. Remarkably upwards increasing of absolute abundance of phoD-encoding gene in spring reaching up to 2.6 times of that in winter facilitated the generation of APA in spring. Cobetia and Calothrix followed by Aquabacterium and Mitsuaria were the most abundant phoD-encoding genera with relative abundance > 4%. Weakly positive correlation between dominant bacterial genera and APA and P fractions suggested that low-abundance genera was also involved in the APA generation and Po hydrolysis. These results indicate that spring with high water temperature and depth facilitate the mineralization of Po in the sediment and increase of labile PO43- load in the water, further provide valuable information for the management of eutrophic lakes.
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Affiliation(s)
- Hezhong Yuan
- Jiangsu Key Laboratory of Atmospheric Environment Monitoring and Pollution Control and Collaborative Innovation Center of Atmospheric Environment and Equipment Technology (CICAEET), School of Environmental Science and Engineering, Nanjing University of Information Science and Technology, Nanjing 210044, China.
| | - Yiwei Cai
- Jiangsu Key Laboratory of Atmospheric Environment Monitoring and Pollution Control and Collaborative Innovation Center of Atmospheric Environment and Equipment Technology (CICAEET), School of Environmental Science and Engineering, Nanjing University of Information Science and Technology, Nanjing 210044, China
| | - Haixiang Wang
- Jiangsu Key Laboratory of Atmospheric Environment Monitoring and Pollution Control and Collaborative Innovation Center of Atmospheric Environment and Equipment Technology (CICAEET), School of Environmental Science and Engineering, Nanjing University of Information Science and Technology, Nanjing 210044, China
| | - Enfeng Liu
- College of Geography and Environment, Shandong Normal University, Ji'nan 250359, China
| | - Qiang Li
- Department of Soil Science, University of Wisconsin-Madison, 53706, Madison, WI, United States
| | - Qingfei Zeng
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China.
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15
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Wei W, Guan D, Ma M, Jiang X, Fan F, Meng F, Li L, Zhao B, Zhao Y, Cao F, Chen H, Li J. Long-term fertilization coupled with rhizobium inoculation promotes soybean yield and alters soil bacterial community composition. Front Microbiol 2023; 14:1161983. [PMID: 37275141 PMCID: PMC10232743 DOI: 10.3389/fmicb.2023.1161983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Accepted: 04/12/2023] [Indexed: 06/07/2023] Open
Abstract
Microbial diversity is an important indicator of soil fertility and plays an indispensable role in farmland ecosystem sustainability. The short-term effects of fertilization and rhizobium inoculation on soil microbial diversity and community structure have been explored extensively; however, few studies have evaluated their long-term effects. Here, we applied quantitative polymerase chain reaction (qPCR) and amplicon sequencing to characterize the effect of 10-year fertilizer and rhizobium inoculation on bacterial communities in soybean bulk and rhizosphere soils at the flowering-podding and maturity stages. Four treatments were examined: non-fertilization control (CK), phosphorus and potassium fertilization (PK), nitrogen and PK fertilization (PK + N), and PK fertilization and Bradyrhizobium japonicum 5821 (PK + R). Long-term co-application of rhizobium and PK promoted soybean nodule dry weight by 33.94% compared with PK + N, and increased soybean yield by average of 32.25%, 5.90%, and 5.00% compared with CK, PK, and PK + N, respectively. The pH of PK + R was significantly higher than that of PK and PK + N at the flowering-podding stage. The bacterial abundance at the flowering-podding stage was positively correlated with soybean yield, but not at the maturity stage. The significant different class Gemmatimonadetes, and the genera Gemmatimonas, and Ellin6067 in soil at the flowering-podding stage were negatively correlated with soybean yield. However, the bacterial community at class and genus levels at maturity had no significant effect on soybean yield. The key bacterial communities that determine soybean yield were concentrated in the flowering-podding stage, not at maturity stage. Rhizosphere effect, growth period, and treatment synergies resulted in significant differences in soil bacterial community composition. Soil organic matter (OM), total nitrogen (TN), pH, and available phosphorus (AP) were the main variables affecting bacterial community structure. Overall, long-term co-application of rhizobium and fertilizer not only increased soybean yield, but also altered soil bacterial community structure through niche reconstruction and microbial interaction. Rhizobium inoculation plays key role in reducing nitrogen fertilizer application and promoting sustainable agriculture practices.
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Affiliation(s)
- Wanling Wei
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Dawei Guan
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Mingchao Ma
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
- Laboratory of Quality & Safety Risk Assessment for Microbial Products (Beijing), Ministry of Agriculture, Beijing, China
| | - Xin Jiang
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
- Laboratory of Quality & Safety Risk Assessment for Microbial Products (Beijing), Ministry of Agriculture, Beijing, China
| | - Fenliang Fan
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Fangang Meng
- Soybean Research Institute, Jilin Academy of Agricultural Sciences, Jilin, China
| | - Li Li
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
- Laboratory of Quality & Safety Risk Assessment for Microbial Products (Beijing), Ministry of Agriculture, Beijing, China
| | - Baisuo Zhao
- Laboratory of Quality & Safety Risk Assessment for Microbial Products (Beijing), Ministry of Agriculture, Beijing, China
| | - Yubin Zhao
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Fengming Cao
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
- Laboratory of Quality & Safety Risk Assessment for Microbial Products (Beijing), Ministry of Agriculture, Beijing, China
| | - Huijun Chen
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jun Li
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
- Laboratory of Quality & Safety Risk Assessment for Microbial Products (Beijing), Ministry of Agriculture, Beijing, China
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16
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Chen S, Wang L, Zhang S, Li N, Wei X, Wei Y, Wei L, Li J, Huang S, Chen Q, Zhang T, Bolan NS. Soil organic carbon stability mediate soil phosphorus in greenhouse vegetable soil by shifting phoD-harboring bacterial communities and keystone taxa. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 873:162400. [PMID: 36842585 DOI: 10.1016/j.scitotenv.2023.162400] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 02/14/2023] [Accepted: 02/18/2023] [Indexed: 06/18/2023]
Abstract
Addition of organic amendments, such as manure and straw, to arable fields as a partial substitute for mineral phosphorus (P), are a sustainable practice in high-efficiency agricultural production. Different organic inputs may induce varied soil organic carbon (OC) stability and phoD harboring microbes, subsequently regulate P behavior, but the underlying mechanisms are poorly understood. A 11-year field experiment examined P forms by 31P-nuclear magnetic resonance (NMR), OC chemical composition by 13C NMR, and biologically-based P availability methods, phoD bacterial communities, and their co-occurrence in soils amended with chemical P fertilizer (CF), chemical P partly substituted by organic amendments including pig manure (CM), a mixture of pig manure and corn straw (CMS), and corn straw (CS), with equal P input in all treatments. Organic amendments significantly increased soil labile Pi (CaCl2-P, citrate-P, 2.91-3.26 and 1.16-1.32 times higher than CF) and Po (enzyme-P, diesters, 4.08-7.47 and 1.71-2.14 times higher than CF) contents and phosphatase activities, while significantly decreased aromaticity (AI) and recalcitrance indexes (RI) of soil C, compared with CF. The keystone genera in manured soils (Alienimomas and Streptomyces) and straw-applied soils (Janthinobacterium and Caulobacter) were significantly correlated with soil enzyme-P, microbial biomass P (MBP), diesters, and citrate-P. Soil AI and RI were significantly correlated with the phoD keystone and soil P species. It suggested that the keystone was impacted by soil OC stability and play a role in regulating P redistribution in amended soils. This study highlights how manure and straw incorporation altered soil OC stability, shaped the phoD harboring community, and enhanced soil P biological processes promoted by the keystone taxa. The partial substitution of mineral P by mixture of manure and straw is effectively promote soil P availability and beneficial for environmental sustainability.
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Affiliation(s)
- Shuo Chen
- Beijing Key Laboratory of Farmland Soil Pollution Prevention-control and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, PR China
| | - Liying Wang
- Institute of Agricultural Resources and Environment, Hebei Academy of Agriculture and Forestry Sciences, Shijiazhuang 050051, PR China
| | - Shuai Zhang
- Beijing Key Laboratory of Farmland Soil Pollution Prevention-control and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, PR China
| | - Naihui Li
- Department of Horticulture, Northeast Agricultural University, Harbin 150030, PR China
| | - Xiaomeng Wei
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, PR China
| | - Yuquan Wei
- Organic Recycling Institute (Suzhou) of China Agricultural University, Wuzhong District, Suzhou 215128, PR China
| | - Lulu Wei
- Beijing Key Laboratory of Farmland Soil Pollution Prevention-control and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, PR China
| | - Ji Li
- Beijing Key Laboratory of Farmland Soil Pollution Prevention-control and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, PR China; Organic Recycling Institute (Suzhou) of China Agricultural University, Wuzhong District, Suzhou 215128, PR China
| | - Shaowen Huang
- Key Laboratory of Plant Nutrition and Fertilizer, Ministry of Agriculture and Rural Affairs/Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, PR China.
| | - Qing Chen
- Beijing Key Laboratory of Farmland Soil Pollution Prevention-control and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, PR China.
| | - Tao Zhang
- Beijing Key Laboratory of Farmland Soil Pollution Prevention-control and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, PR China
| | - Nanthi S Bolan
- School of Agriculture and Environment, The University of Western Australia, Perth, WA 6009, Australia; The UWA Institute of Agriculture, The University of Western Australia, Perth, WA 6009, Australia
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Yang C, Zhang H, Zhao X, Liu P, Wang L, Wang W. A functional metagenomics study of soil carbon and nitrogen degradation networks and limiting factors on the Tibetan plateau. Front Microbiol 2023; 14:1170806. [PMID: 37228377 PMCID: PMC10203874 DOI: 10.3389/fmicb.2023.1170806] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Accepted: 04/10/2023] [Indexed: 05/27/2023] Open
Abstract
Introduction The Three-River Source Nature Reserve is located in the core area of the Qinghai-Tibetan Plateau, with the alpine swamp, meadow and steppe as the main ecosystem types. However, the microbial communities in these alpine ecosystems, and their carbon and nitrogen degrading metabolic networks and limiting factors remain unclear. Methods We sequenced the diversity of bacteria and fungi in alpine swamps, meadows, steppes, and their degraded and artificially restored ecosystems and analyzed soil environmental conditions. Results The results indicated that moisture content had a greater influence on soil microbial community structure compared to degradation and restoration. Proteobacteria dominated in high moisture alpine swamps and alpine meadows, while Actinobacteria dominated in low moisture alpine steppes and artificial grasslands. A metabolic network analysis of carbon and nitrogen degradation and transformation using metagenomic sequencing revealed that plateau microorganisms lacked comprehensive and efficient enzyme systems to degrade organic carbon, nitrogen, and other biological macromolecules, so that the short-term degradation of alpine vegetation had no effect on the basic composition of soil microbial community. Correlation analysis found that nitrogen fixation was strong in meadows with high moisture content, and their key nitrogen-fixing enzymes were significantly related to Sphingomonas. Denitrification metabolism was enhanced in water-deficient habitats, and the key enzyme, nitrous oxide reductase, was significantly related to Phycicoccus and accelerated the loss of nitrogen. Furthermore, Bacillus contained a large number of amylases (GH13 and GH15) and proteases (S8, S11, S26, and M24) which may promote the efficient degradation of organic carbon and nitrogen in artificially restored grasslands. Discussion This study illustrated the irrecoverability of meadow degradation and offered fundamental information for altering microbial communities to restore alpine ecosystems.
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Affiliation(s)
- Chong Yang
- School of Geographical Sciences, Qinghai Normal University, Xining, China
- School of Life Sciences, Qinghai Normal University, Xining, China
| | - Hong Zhang
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao, China
| | - Xinquan Zhao
- Northwest Plateau Institute of Biology, Chinese Academy of Sciences, Xining, China
| | - Pan Liu
- School of Geographical Sciences, Qinghai Normal University, Xining, China
| | - Lushan Wang
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao, China
| | - Wenying Wang
- School of Life Sciences, Qinghai Normal University, Xining, China
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Liu J, Qiu T, Peñuelas J, Sardans J, Tan W, Wei X, Cui Y, Cui Q, Wu C, Liu L, Zhou B, He H, Fang L. Crop residue return sustains global soil ecological stoichiometry balance. GLOBAL CHANGE BIOLOGY 2023; 29:2203-2226. [PMID: 36607175 DOI: 10.1111/gcb.16584] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 12/25/2022] [Indexed: 05/28/2023]
Abstract
Although soil ecological stoichiometry is constrained in natural ecosystems, its responses to anthropogenic perturbations are largely unknown. Inputs of inorganic fertilizer and crop residue are key cropland anthropogenic managements, with potential to alter their soil ecological stoichiometry. We conducted a global synthesis of 682 data pairs to quantify the responses of soil carbon (C), nitrogen (N), and phosphorus (P) and grain yields to combined inputs of crop residue plus inorganic fertilizer compared with only inorganic fertilizer application. Crop residue inputs enhance soil C (10.5%-12%), N (7.63%-9.2%), and P (2.62%-5.13%) contents, with an increase in C:N (2.51%-3.42%) and C:P (7.27%-8.00%) ratios, and grain yields (6.12%-8.64%), indicating that crop residue alleviated soil C limitation caused by inorganic fertilizer inputs alone and was able to sustain balanced stoichiometry. Moreover, the increase in soil C and C:N(P) ratio reached saturation in ~13-16 years after crop residue return, while grain yield increase trend discontinued. Furthermore, we identified that the increased C, N, and P contents and C:N(P) ratios were regulated by the initial pH and C content, and the increase in grain yield was not only related to soil properties, but also negatively related to the amount of inorganic N fertilizer input to a greater extent. Given that crop residual improvement varies with soil properties and N input levels, we propose a predictive model to preliminary evaluate the potential for crop residual improvement. Particularly, we suggest that part of the global budget should be used to subsidize crop residue input management strategies, achieving to a win-win situation for agricultural production, ecological protection, and climate change mitigation.
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Affiliation(s)
- Ji Liu
- Hubei Province Key Laboratory for Geographical Process Analysis and Simulation, Central China Normal University, Wuhan, China
- Department of Ecohydrology, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany
| | - Tianyi Qiu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Chinese Academy of Sciences, Northwest A&F University, Yangling, Shaanxi, China
| | - Josep Peñuelas
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
| | - Jordi Sardans
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
| | - Wenfeng Tan
- College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
| | - Xiaomeng Wei
- Key Laboratory of Agro-ecological Processes in Subtropical Region and Changsha Research Station for Agricultural and Environmental Monitoring, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Hunan, China
| | - Yongxing Cui
- College of Urban and Environmental Sciences, Sino-French Institute for Earth System Science, Peking University, Beijing, China
| | - Qingliang Cui
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Chinese Academy of Sciences, Northwest A&F University, Yangling, Shaanxi, China
| | - Chuanfa Wu
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Plant Virology, Ningbo University, Ningbo, China
| | - Lanfa Liu
- Hubei Province Key Laboratory for Geographical Process Analysis and Simulation, Central China Normal University, Wuhan, China
| | - Baitao Zhou
- Hubei Province Key Laboratory for Geographical Process Analysis and Simulation, Central China Normal University, Wuhan, China
| | - Haoran He
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Chinese Academy of Sciences, Northwest A&F University, Yangling, Shaanxi, China
| | - Linchuan Fang
- Hubei Province Key Laboratory for Geographical Process Analysis and Simulation, Central China Normal University, Wuhan, China
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Chinese Academy of Sciences, Northwest A&F University, Yangling, Shaanxi, China
- School of Resource and Environmental Engineering, Wuhan University of Technology, Wuhan, China
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Wu Q, Wan W. Insight into application of phosphate-solubilizing bacteria promoting phosphorus availability during chicken manure composting. BIORESOURCE TECHNOLOGY 2023; 373:128707. [PMID: 36746213 DOI: 10.1016/j.biortech.2023.128707] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 02/01/2023] [Accepted: 02/02/2023] [Indexed: 06/18/2023]
Abstract
Understanding ecological roles of phosphate-solubilizing bacteria (PSB) is important to optimize composting systems. Illumina MiSeq sequencing, gene quantitation, and statistical analyses were employed to explore ecological mechanisms underlying available phosphorus (AP) facilitation during composting with the inoculation of PSB Pseudomonas sp. WWJ-22. Results displayed that the inoculation of PSB significantly increased AP from 0.83 to 1.23 g kg-1, and notably increased abundances of phosphorus-cycling genes as well as numbers of PSB mineralizing phytate and lecithin. The PSB addition significantly affected compost bacterial community composition, and phosphorus factions and phosphorus-cycling genes independently explained 25.4 % and 25.0 % bacterial compositional dissimilarity. Stochastic and homogenizing processes affected more on bacterial community assembly, and rare bacteria potentially mediated organic phosphorus mineralization. These results emphasized that phosphorus fractions, PSB number, phosphorus-cycling gene abundance, and bacterial community composition contributed differently to phosphorus availability. Findings highlight ecological roles of exogenous PSB during chicken manure composting.
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Affiliation(s)
- Qiusheng Wu
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang 550081, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Wenjie Wan
- Key Laboratory of Aquatic Botany and Watershed Ecology Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430070, PR China; Danjiangkou Wetland Ecosystem Field Scientific Observation and Research Station, Chinese Academy of Sciences & Hubei Province, Wuhan 430070, PR China.
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20
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The spatio-temporal distribution of alkaline phosphatase activity and phoD gene abundance and diversity in sediment of Sancha Lake. Sci Rep 2023; 13:3121. [PMID: 36813883 PMCID: PMC9946943 DOI: 10.1038/s41598-023-29983-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Accepted: 02/14/2023] [Indexed: 02/24/2023] Open
Abstract
The bacterial phoD gene encoding alkaline phosphatase (ALP) plays an important role in the release of soluble reactive phosphorus (SRP) from organic phosphorus in ecosystems. However, phoD gene diversity and abundance in ecosystems is poorly understood. In the present study, we sampled the surface sediments and the overlying water of Sancha Lake at 9 different sampling sites, a typical eutrophic sub-deep freshwater lake in China, in April 15 (spring) and November 3 (autumn), 2017. High-throughput sequencing and qPCR were performed to analyze the diversity and abundance of the bacterial phoD gene in the sediments. We further discussed the relationships between the diversity and abundance of the phoD gene and environmental factors and ALP activity. A total of 881,717 valid sequences were obtained from 18 samples and were classified into 41 genera, 31 families, 23 orders, 12 classes, and 9 phyla and grouped into 477 OTUs. The dominant phyla were Proteobacteria and Actinobacteria. The phylogenetic tree based on the sequences of the phoD gene was plotted and composed of three branches. The genetic sequences were aligned predominantly with genera Pseudomonas, Streptomyces, Cupriavidus, and Paludisphaer. The phoD-harboring bacterial community structure showed a significant difference in spring and autumn, but no apparent spatial heterogeneity. The phoD gene abundances at different sampling points were significantly higher in autumn than in spring. In autumn and spring, the phoD gene abundance was significantly higher in the tail of lake and where cage culture used to be intensive. pH value, dissolved oxygen (DO), total organic carbon (TOC), ALP, and phosphorus were important environmental factors affecting the diversity of the phoD gene and the phoD-harboring bacterial community structure. Changes in phoD-harboring bacterial community structure, phoD gene abundance, and ALP activity were negatively correlated with SRP in overlying water. Our study indicated phoD-harboring bacteria in the sediments of Sancha Lake with the characteristics of high diversity and significant spatial and temporal heterogeneity in abundance and community structure, which played a important role in the release of SRP.
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21
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Liu D, Song X, Liu Y, Wang C. Effects of phosphorus application on soil phosphorus forms and phoD-harboring microbial communities in an alpine grassland on the Qinghai-Tibetan Plateau. Front Ecol Evol 2023. [DOI: 10.3389/fevo.2023.1131408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023] Open
Abstract
Phosphorus (P) application to terrestrial ecosystems affects not only aboveground plants but also soil P forms and phosphatase-associated microbes. The phoD gene is widespread in soil and plays an important role in P transformation. However, it is still unclear how phoD-harboring microbial communities respond to different P application rates, and the relationships between soil properties and phoD-harboring microbial community need to be better understood. In this study, the impacts of seven P application rates [0 (P0), 10 (P10), 20 (P20), 30 (P30), 40 (P40), 50 (P50), and 60 (P60) g⋅m–2⋅a–1] on the soil physicochemical properties, P forms, and phoD-harboring microbial communities were assessed. As the results, inorganic P (i.e., Resin-Pi, NaHCO3-Pi, NaOH-Pi, and HCl-Pi) and Bio-P increased firstly and then decreased with increasing P application rate, with the highest values in the P30 treatment. Soil phoD-harboring microbial community structures in low-P (P0∼P30) treatments were significantly different from that in high-P (P40∼P60) treatments. Soil phoD-harboring microbial Shannon and Simpson diversity increased firstly and then decreased with increasing P application rate, and there was a tipping point at the P application rate of 30 g⋅m–2⋅a–1. The Mantel test and structural equation modeling (SEM) revealed that Bio-P, TC (total carbon), Fe, NaOH-organic P (NaOH-Po), and soil pH were strongly related to the soil phoD-harboring microbial community structure. In conclusion, this study demonstrated that P application affected soil P forms and phoD-harboring microbes in an alpine grassland on the Qinghai-Tibetan Plateau, and there was a P application threshold for optimistic growth of phoD-harboring microbes in an alpine grassland on the Qinghai-Tibetan Plateau.
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22
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Cheng X, Xiang X, Yun Y, Wang W, Wang H, Bodelier PLE. Archaea and their interactions with bacteria in a karst ecosystem. Front Microbiol 2023; 14:1068595. [PMID: 36814573 PMCID: PMC9939782 DOI: 10.3389/fmicb.2023.1068595] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Accepted: 01/19/2023] [Indexed: 02/08/2023] Open
Abstract
Karst ecosystems are widely distributed around the world, accounting for 15-20% of the global land area. However, knowledge on microbial ecology of these systems does not match with their global importance. To close this knowledge gap, we sampled three niches including weathered rock, sediment, and drip water inside the Heshang Cave and three types of soils overlying the cave (forest soil, farmland soil, and pristine karst soil). All these samples were subjected to high-throughput sequencing of V4-V5 region of 16S rRNA gene and analyzed with multivariate statistical analysis. Overall, archaeal communities were dominated by Thaumarchaeota, whereas Actinobacteria dominated bacterial communities. Thermoplasmata, Nitrosopumilaceae, Aenigmarchaeales, Crossiella, Acidothermus, and Solirubrobacter were the important predictor groups inside the Heshang Cave, which were correlated to NH4 + availability. In contrast, Candidatus Nitrososphaera, Candidatus Nitrocosmicus, Thaumarchaeota Group 1.1c, and Pseudonocardiaceae were the predictors outside the cave, whose distribution was correlated with pH, Ca2+, and NO2 -. Tighter network structures were found in archaeal communities than those of bacteria, whereas the topological properties of bacterial networks were more similar to those of total prokaryotic networks. Both chemolithoautotrophic archaea (Candidatus Methanoperedens and Nitrosopumilaceae) and bacteria (subgroup 7 of Acidobacteria and Rokubacteriales) were the dominant keystone taxa within the co-occurrence networks, potentially playing fundamental roles in obtaining energy under oligotrophic conditions and thus maintaining the stability of the cave ecosystem. To be noted, all the keystone taxa of karst ecosystems were related to nitrogen cycling, which needs further investigation, particularly the role of archaea. The predicted ecological functions in karst soils mainly related to carbohydrate metabolism, biotin metabolism, and synthesis of fatty acid. Our results offer new insights into archaeal ecology, their potential functions, and archaeal interactions with bacteria, which enhance our understanding about the microbial dark matter in the subsurface karst ecosystems.
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Affiliation(s)
- Xiaoyu Cheng
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, China
- School of Environmental Studies, China University of Geosciences, Wuhan, China
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, Netherlands
| | - Xing Xiang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, China
- College of Life Science, Shangrao Normal University, Shangrao, China
| | - Yuan Yun
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, China
- College of Life Sciences, Nankai University, Tianjin, China
| | - Weiqi Wang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, China
- School of Environmental Studies, China University of Geosciences, Wuhan, China
| | - Hongmei Wang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, China
- School of Environmental Studies, China University of Geosciences, Wuhan, China
| | - Paul L. E. Bodelier
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, Netherlands
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23
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Yang J, Xin X, Zhong X, Yang W, Zhang X, Ding S, Ren G, Zhu A. The fate of fertilizer-derived phosphorus under different long-term fertilization regimes: A phosphate oxygen isotope study. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 856:159263. [PMID: 36206904 DOI: 10.1016/j.scitotenv.2022.159263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Revised: 10/02/2022] [Accepted: 10/02/2022] [Indexed: 06/16/2023]
Abstract
Understanding the fate of exogenous fertilizer-derived inorganic phosphorus (Pi) is essential for effective P management. Hence, this study carried out a 180-day incubation experiment with or without KH2P18O4 in soils with four different fertilization regimes [without fertilizer (CK), mineral P and K fertilizer (PK), mineral N, P, and K fertilizer (NPK), compost (OM)]. We analyzed the atom % excess in phosphate oxygen isotope of sequentially extracted Pi pools (H2O-Pi, NaHCO3-Pi, NaOH-Pi, and HCl-Pi), soil respiration, potential phosphatase activities, and microbial biomass. Our results showed that exogenous phosphate fertilizer was immediately transformed into the H2O-Pi and NaHCO3-Pi pools and gradually partially immobilized in the HCl-Pi pool. Additionally, biotransformation plays an important role in the turnover of fertilizer-derived Pi. After the 180-day incubation, the biologically transformed H2O-Pi content was significantly (P<0.05) reduced by 63.2 % on average, with the largest reduction in PK. The NaHCO3-Pi gradually increased in both CK and OM through biotic processes. However, it continuously decreased in PK and NPK, likely due to the strong adsorption and microbial fixation. The NaOH-Pi fluctuated slightly in CK, NPK, and OM while gradually decreasing in PK. At the end of the incubation, 28.6 %, 37.0 %, 61.2 %, and 75.2 % of the Pi increment in CK, OM, NPK, and PK were stored in the HCl-Pi pool, respectively. Overall, these findings provide important information on the dynamics of fertilizer-derived Pi, delivering new insights into rational phosphate fertilizer management and sustainable agricultural development.
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Affiliation(s)
- Jiao Yang
- Fengqiu Agro-ecological Experimental Station, State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China; University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing 100049, China
| | - Xiuli Xin
- Fengqiu Agro-ecological Experimental Station, State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China; University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing 100049, China
| | - Xinyue Zhong
- Fengqiu Agro-ecological Experimental Station, State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China
| | - Wenliang Yang
- Fengqiu Agro-ecological Experimental Station, State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China; University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing 100049, China
| | - Xianfeng Zhang
- Fengqiu Agro-ecological Experimental Station, State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China; University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing 100049, China
| | - Shijie Ding
- Fengqiu Agro-ecological Experimental Station, State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China; University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing 100049, China
| | - Guocui Ren
- Fengqiu Agro-ecological Experimental Station, State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China; University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing 100049, China
| | - Anning Zhu
- Fengqiu Agro-ecological Experimental Station, State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China; University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing 100049, China.
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Chen P, Wan W. Rare alkaline phosphatase-harboring bacteria mediate organic phosphorus mineralization during swine manure composting. BIORESOURCE TECHNOLOGY 2023; 368:128335. [PMID: 36403913 DOI: 10.1016/j.biortech.2022.128335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 11/10/2022] [Accepted: 11/13/2022] [Indexed: 06/16/2023]
Abstract
Deciphering ecological functions of alkaline phosphatase (phoD)-harboring bacteria in composting systems is crucial but poorly understood. High-throughput sequencing, gene quantification, and statistical analyses were applied to investigate effects of abundance and diversity of phoD-harboring bacteria (PHB) on phosphorus availability during swine manure composting. Results showed that available phosphorus notably increased from 0.5 to 1.43 g kg-1, and physicochemical properties and enzyme activities affected PHB community composition. Phylogenetic signals of PHB responded notably to temperature and phosphorus components, and stochasticity (94.2 %) dominated community assembly. Abundance and diversity of PHB directly and indirectly influenced phosphorus availability, and rare PHB mediated organic phosphorus mineralization. A phosphate-solubilizing bacterium (PSB) Pseudomonas sp. WWJ-22 isolated from compost displayed good efficiency in mineralizing lecithin, demonstrating the highest phosphorus-solubilizing level of 116.3 mg L-1. This study highlights ecological roles of PHB on phosphorus availability and provides a potential PSB candidate for composting.
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Affiliation(s)
- Peng Chen
- Key Laboratory of Aquatic Botany and Watershed Ecology Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, PR China; Danjiangkou Wetland Ecosystem Field Scientific Observation and Research Station, Chinese Academy of Sciences & Hubei Province, Wuhan 430074, PR China
| | - Wenjie Wan
- Key Laboratory of Aquatic Botany and Watershed Ecology Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, PR China; Danjiangkou Wetland Ecosystem Field Scientific Observation and Research Station, Chinese Academy of Sciences & Hubei Province, Wuhan 430074, PR China.
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Li Z, Wang J, Wu Y, Hu J, Cong L, Yang C, Fu J, Sun J. Changes in soil properties and the phoD-harboring bacteria of the alfalfa field in response to phosphite treatment. Front Microbiol 2022; 13:1013896. [DOI: 10.3389/fmicb.2022.1013896] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Accepted: 11/02/2022] [Indexed: 11/30/2022] Open
Abstract
Phosphite, a reduced form of orthophosphate, is characterized by high solubility, and transportation efficiency and can be used as potential phosphorus fertilizer, plant biostimulant and supplemental fertilizer in agriculture. However, the effects of phosphite fertilizer on soil properties and microorganisms are poorly understood. This study evaluated the effects of phosphate and phosphite fertilizers on the different forms of phosphorus, alkaline phosphatase (ALP) activity, and phoD-harboring bacterial community in the alfalfa (Medicago sativa) field. The study used four concentrations (30, 60, 90, and 120 mg P2O5 kg−1 soil) of phosphate (KH2PO4) and phosphite (KH2PO3) fertilizers for the alfalfa field treatment. The results showed that both phosphite and phosphate fertilizers increased the total phosphorus (TP) and available phosphorus (AP) contents in the soil. The phosphorus content of the phosphite-treated soil was lower than that of the phosphate-treated one. TP, inorganic phosphate (Pi), and AP negatively regulated ALP activity, which decreased with increasing phosphate and phosphite fertilizers concentrations. Furthermore, high-throughput sequencing analysis identified 6 phyla and 29 families, which were classified from the altered operational taxonomic units (OTUs) of the soil samples. The redundancy analysis (RDA) revealed that pH, TP, AP and Pi were significantly related to the phoD-harboring bacterial community constructure. The different fertilizer treatments altered the key families, contributing to soil ALP activities. Frankiaceae, Sphingomonadaceae, and Rhizobiaceae positively correlated with ALP activity in phosphite-treated soil. Moreover, the structural equation model (SEM) revealed that ALP activity was affected by the phoD-harboring bacterial community through altered organic phosphorus (Po), AP, total nitrogen (TN), soil organic carbon (SOC), and pH levels under phosphate fertilizer treatment. However, the effect was achieved through positive regulation of pH and AP under phosphite fertilizer. Thus, the changes in soil properties and phoD-harboring bacteria in response to phosphate and phosphite treatments differed in the alfalfa field. This study is the first to report the effects of phosphite on the soil properties of an alfalfa field and provides a strong basis for phosphite utilization in the future.Highlights– Phosphite and phosphate increase the total phosphorus and available phosphorus.– The pH was the dominant factor influencing the phoD-harboring bacterial community under phosphite fertilizer.– The response of soil properties and phoD-harboring bacterial community to phosphate and phosphite fertilizers differed in the alfalfa field.
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Lang M, Li H, Lakshmanan P, Chen Y, Chen X. phoD-harboring bacterial community composition dominates organic P mineralization under long-term P fertilization in acid purple soil. Front Microbiol 2022; 13:1045919. [PMID: 36504812 PMCID: PMC9730253 DOI: 10.3389/fmicb.2022.1045919] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Accepted: 11/03/2022] [Indexed: 11/25/2022] Open
Abstract
Introduction A better understanding of the regulatory role of microorganisms on soil phosphorous (P) mobilization is critical for developing sustainable fertilization practices and reducing P resource scarcity. The phoD genes regulate soil organic P (Po) mobilization. Methods Based on the long-term P application experiments in acid purple soil of maize system in Southwest China (started in 2010), the experiment included five P levels: 0, 16, 33, 49, and 65.5 kg P hm-2 (P0, P16, P33, P49, and P65.5, respectively). The molecular speciation of organic P in soil was determined by 31P-nuclear magnetic resonance (NMR), high-throughput sequencing technology, and real-time qPCR were used to analyze the bacterial community and abundance of phoD-harboring bacterial genes, exploring the bacterial community and abundance characteristics of phoD gene and its relationship with the forms of Po and alkaline phosphatase (ALP) activity in the soil. Results The results showed that the orthophosphate monoesters (OM) were the main Po speciation and varied by P fertilization in acid purple soil. ALP activity decreased as P fertilization increased. Co-occurrence network analysis identified the overall network under five P fertilizations. The keystone taxon base on the network showed that Collimonas, Roseateles, Mesorhizobium, and Cellulomonas positively correlated with both OM and Po. The random forest showed that Cellulomonas, Roseateles, and Rhodoplanes were the key predictors for ALP activity. The keystone taxon was a more important predictor than the dominant taxon for ALP, OM, and Po. The structural equation model (SEM) showed that soil organic matter (SOM), available P (AP), and OM were the main factors influencing the ALP by reshaping phoD-harboring bacteria alpha diversity, community composition, and phoD abundance. Discussion The phoD-harboring bacterial community composition especially the keystone taxon rather than alpha diversity and abundance dominated the ALP activity, which could promote P utilization over an intensive agroecosystem. These findings improve the understanding of how long-term gradient fertilization influences the community composition and function of P-solubilizing microorganisms in acid purple soil.
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Affiliation(s)
- Ming Lang
- College of Resources and Environment, Academy of Agricultural Sciences, Southwest University, Chongqing, China
- Interdisciplinary Research Center for Agriculture Green Development in Yangtze River Basin, Southwest University, Chongqing, China
| | - Haoming Li
- College of Resources and Environment, Academy of Agricultural Sciences, Southwest University, Chongqing, China
| | - Prakash Lakshmanan
- Interdisciplinary Research Center for Agriculture Green Development in Yangtze River Basin, Southwest University, Chongqing, China
- Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, China
- Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St Lucia, QLD, Australia
| | - Yuanxue Chen
- College of Resource Sciences, Sichuan Agricultural University, Chengdu, China
| | - Xinping Chen
- College of Resources and Environment, Academy of Agricultural Sciences, Southwest University, Chongqing, China
- Interdisciplinary Research Center for Agriculture Green Development in Yangtze River Basin, Southwest University, Chongqing, China
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Gaspar SS, Assis LLR, Carvalho CA, Buttrós VH, Ferreira GMDR, Schwan RF, Pasqual M, Rodrigues FA, Rigobelo EC, Castro RP, Dória J. Dynamics of microbiota and physicochemical characterization of food waste in a new type of composter. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2022. [DOI: 10.3389/fsufs.2022.960196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Organic wastes are considered the most significant components of urban solid waste, negatively affecting the environment. It is essential to use renewable resources to minimize environmental risks. Composting is one of the most sustainable methods for managing organic waste and involves transforming organic matter into a stable and nutrient-enriched biofertilizer, through the succession of microbial populations into a stabilized product. This work aimed to evaluate the efficiency of the new type of composter and the microbial and physiochemical dynamics during composting aiming to accelerate the degradation of organic waste and produce high-quality compost. Two inoculants were evaluated: (1) efficient microorganisms (EM); (2) commercial inoculum (CI), which were compared to a control treatment, without inoculation. Composting was performed by mixing organic waste from gardening with residues from the University's Restaurant (C/N ratio 30:1). The composting process was carried out in a 1 m3 composter with controlled temperature and aeration. The thermophilic phase for all treatments was reached on the second day. Mature compost was obtained after an average of 120 days, and composting in all treatments showed an increase in the availability of P and micronutrients. The new composter helped to accelerate the decomposition of residues, through the maintenance of adequate oxygen content and temperature control inside the cells, providing high metabolic activity of microorganisms, contributing to an increase in physicochemical characteristics, also reducing the composting time in both treatments. During composting, the bacteria and actinobacteria populations were higher than yeasts and filamentous fungi. The inoculated treatments presented advantages showing more significant mineralization of P-available and micronutrients such as Mn and Zn in terms of the quality of the final product in comparison to the control treatment. Finally, the new composter and the addition of inoculants contributed significantly to the efficiency of the process of composting organic waste.
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Ma C, Chen X, Zheng G, Liu N, Zhao J, Zhang H. Exploring the influence mechanisms of polystyrene-microplastics on sewage sludge composting. BIORESOURCE TECHNOLOGY 2022; 362:127798. [PMID: 35995344 DOI: 10.1016/j.biortech.2022.127798] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Revised: 08/12/2022] [Accepted: 08/16/2022] [Indexed: 06/15/2023]
Abstract
To explore the influence mechanisms of polystyrene-microplastics (PS-MPs) on sewage sludge composting and put forward relevant composting adjustment strategies, a 30-day sewage sludge (SS) composting experiment was conducted by adding 0%, 0.5%, and 1% (w/w) PS-MPs. The addition of PS-MPs reduced compost temperature, microbial biomass carbon (MBC), and the degradation of volatile solids (2.6%-4.8%), and inhibited the activities of key enzymes (β-glucosidase and alkaline phosphatase) but increased urease activity in the thermophilic phase. Moreover, PS-MPs altered the relative abundance of dominant bacteria and changed the relevance of main enzymes and bacterial communities. Moreover, high levels of PS-MPs inhibited the contribution of dominant bacterial to alkaline phosphatase and β-glucosidase. Redundancy analysis revealed that PS-MPs affected the composting process mainly through reduced MBC at the mesophilic phase and temperature at the thermophilic phase. Thus, regulating MBC and temperature in specific phases could help overcome the adverse effects of PS-MPs on composting.
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Affiliation(s)
- Chuang Ma
- Henan Collaborative Innovation Center of Environmental Pollution Control and Ecological Restoration, Zhengzhou University of Light Industry, Zhengzhou 450000, PR China
| | - Xiaoyu Chen
- Henan Collaborative Innovation Center of Environmental Pollution Control and Ecological Restoration, Zhengzhou University of Light Industry, Zhengzhou 450000, PR China
| | - Guodi Zheng
- Center for Environmental Remediation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, PR China.
| | - Nan Liu
- Henan Collaborative Innovation Center of Environmental Pollution Control and Ecological Restoration, Zhengzhou University of Light Industry, Zhengzhou 450000, PR China
| | - Jihong Zhao
- Henan Collaborative Innovation Center of Environmental Pollution Control and Ecological Restoration, Zhengzhou University of Light Industry, Zhengzhou 450000, PR China
| | - Hongzhong Zhang
- Henan Collaborative Innovation Center of Environmental Pollution Control and Ecological Restoration, Zhengzhou University of Light Industry, Zhengzhou 450000, PR China
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Chen G, Yuan J, Chen H, Zhao X, Wang S, Zhu Y, Wang Y. Animal manures promoted soil phosphorus transformation via affecting soil microbial community in paddy soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 831:154917. [PMID: 35364170 DOI: 10.1016/j.scitotenv.2022.154917] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Revised: 03/23/2022] [Accepted: 03/25/2022] [Indexed: 06/14/2023]
Abstract
Animal manures are reported as good substitutes for chemical fertilizers to mobilize soil phosphorus (P). However, the mechanisms on how different types of manures regulate microbial biomass involved in P mobilization remain unclear. In this study, we conducted a two-year field experiment to investigate variations in soil microbial biomass carbon (MBC) and P (MBP) and P fractions after 30% animal manures substitution (pig manure (PM), chicken manure (CM), and dairy manure (DM)) in paddy soil. Furthermore, a 30-day incubation experiment was used to explore the mechanisms of soil P transformation induced by 100% manures addition. Two-year field experiment results showed that, compared to the chemical NPK fertilizer, 30% manure substitution didn't influence rice and wheat yields significantly but decreased soil total P loss from runoff by 3.2%. However, 30% manure substitution significantly enhanced MBC and MBP by 11.3-18.4% and 57.1-81.2%, respectively, which also promoted the transformation of moderately labile P (M-P) to labile P (L-P). Moreover, the incubation experiment also convinced that all manures caused higher MBC than chemical P fertilizer. Meanwhile, compared to the no P fertilizer, manures increased L-P and organic P by 2.7%-14.7% and 6.4%-20.0%, respectively. Redundancy analysis indicated that soil MBC/MBP ratio was the main factor to soil L-P and M-P, indicating that animal manures can improve soil microbial abundance and thus promote M-P to L-P in soil. Among three animal manures, PM could improve the mobilization potential of P mostly, due to the highest C source activity by 13C NMR analysis. Our study indicated that animal manures especially PM can be considered as a good candidate for agricultural P management in paddy soils because of their capacity to promote soil P transformation.
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Affiliation(s)
- Guanglei Chen
- State Key Laboratory of Soil and Sustainable Agriculture, Changshu National Agro-Ecosystem Observation and Research Station, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing, 210095, China
| | - Jiahui Yuan
- State Key Laboratory of Soil and Sustainable Agriculture, Changshu National Agro-Ecosystem Observation and Research Station, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Hao Chen
- State Key Laboratory of Soil and Sustainable Agriculture, Changshu National Agro-Ecosystem Observation and Research Station, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Xu Zhao
- State Key Laboratory of Soil and Sustainable Agriculture, Changshu National Agro-Ecosystem Observation and Research Station, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Shenqiang Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Changshu National Agro-Ecosystem Observation and Research Station, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Yiyong Zhu
- Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing, 210095, China
| | - Yu Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Changshu National Agro-Ecosystem Observation and Research Station, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China.
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Wei L, Chen S, Cui J, Ping H, Yuan C, Chen Q. A meta-analysis of arable soil phosphorus pools response to manure application as influenced by manure types, soil properties, and climate. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 313:115006. [PMID: 35398641 DOI: 10.1016/j.jenvman.2022.115006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 03/22/2022] [Accepted: 03/29/2022] [Indexed: 06/14/2023]
Abstract
Manure amendments to agricultural soils is an excellent opportunity for sustainable utilization of agricultural waste while providing multiple benefits to improve soil quality and increase the availability of nutrients to plants, including phosphorus (P). In this study, a meta-analysis of published data from 411 independent observations based on 133 peer-reviewed papers was performed for an in depth understanding of various factors affecting the transformation of soil P pools with manure application. Manure application increased all soil inorganic P (Pi) by 58.0%-282% and organic P (Po) by 65.0%-105%, while decreasing Po/total P (TP), compared to those in unamended soils. Manure types, soil TP, and manure application rates were the important factors that influenced soil P fractions. Elevation of soil labile Pi was more pronounced with compost application, while poultry and pig manure were more beneficial for promoting soil Pi fractions and stable Po contents compared with other manure types. The manure application rate had pronounced effect on increasing the stable Po fractions. The effects of manure application on increasing soil P fractions were greater in soils with lower TP contents as compared to that in high TP soils. Manure effects on enhancing soil labile Pi and moderately labile Pi were greater in acidic soil than that in neutral and alkaline soils. In addition, soil P fractions showed significant correlation with latitude and mean annual precipitation (MAP). By integrating the impacts of manure types, soil properties, and climate, this meta-analysis would help to develop the management of manure application in a specific region of agriculture as well as promote the interpretation of the interfering factors on the soil P fractions changes in the manure-amended soils.
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Affiliation(s)
- LuLu Wei
- Beijing Key Laboratory of Farmyard Soil Pollution Prevention-control and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing, 100193, China
| | - Shuo Chen
- Beijing Key Laboratory of Farmyard Soil Pollution Prevention-control and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing, 100193, China
| | - Jianyu Cui
- Beijing Key Laboratory of Farmyard Soil Pollution Prevention-control and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing, 100193, China
| | - Huaixiang Ping
- Beijing Key Laboratory of Farmyard Soil Pollution Prevention-control and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing, 100193, China
| | - Chengpeng Yuan
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Qing Chen
- Beijing Key Laboratory of Farmyard Soil Pollution Prevention-control and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing, 100193, China
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He D, Wan W. Distribution of Culturable Phosphate-Solubilizing Bacteria in Soil Aggregates and Their Potential for Phosphorus Acquisition. Microbiol Spectr 2022; 10:e0029022. [PMID: 35536021 PMCID: PMC9241762 DOI: 10.1128/spectrum.00290-22] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Accepted: 04/21/2022] [Indexed: 11/22/2022] Open
Abstract
Deciphering distribution patterns of phosphate-solubilizing bacteria (PSB) and phosphorus-cycling-related genes in soils is important to evaluate phosphorus (P) transformation. However, the linkage between PSB number and P-cycling-related gene abundance in soils, especially soil aggregates, remains largely unknown. Here, we estimated the numbers of PSB and abundances of P-cycling-related genes (i.e., gcd and bpp) in soil aggregates under different fertilization regimes as well as P-solubilizing performance and plant-growth-promoting ability of PSB. We found that tricalcium phosphate-solubilizing bacteria, phytate-degrading bacteria, and gcd and bpp abundances were more abundant in silt plus clay (silt+clay; <53 μm) than in macroaggregate (250 to 2000 μm) and microaggregate (53 to 250 μm). Fertilization treatment and aggregate fractionation showed distinct effects on PSB number and P-cycling-related gene abundance. We found significantly negative correlation between gcd gene abundance and tricalcium phosphate-solubilizing bacterial number (Col-CaP) and dramatically positive correlation between bpp gene abundance and phytate-degrading bacterial number (Col-Phy). P fractions were responsible for PSB number and P-cycling-related gene abundance. The isolated Pseudomonas sp. strain PSB-2 and Arthrobacter sp. strain PSB-5 exhibited good performances for solubilizing tricalcium phosphate. The inoculation of Pseudomonas sp. PSB-2 could significantly enhance plant fresh weight, plant dry weight, and plant height. Our results emphasized distinct distribution characteristics of PSB and P-cycling-related genes in soil aggregates and deciphered a close linkage between PSB number and P-cycling-related gene abundance. Our findings might guide the isolation of PSB from agricultural soils and provide a candidate plant-growth-promoting bacterium for agro-ecosystems. IMPORTANCE Phosphate-solubilizing bacteria are responsible for inorganic P solubilization and organic P mineralization. Elucidating the linkage between phosphate-solubilizing bacterial number and P-cycling-related gene abundance is important to isolate plant-growth-promoting bacteria for agro-ecosystems. Our findings reveal differentiating strategies of phosphate-solubilizing bacteria in soil aggregates, and the deciphered P fractions show strong effects on distribution patterns of phosphate-solubilizing bacteria and P-cycling-related genes. Additionally, we isolated phosphate-solubilizing bacteria with good plant-growth-promoting ability. This study enriches our knowledge of P cycling in soil aggregates and might guide the production and management of farmland.
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Affiliation(s)
- Donglan He
- College of Life Science, South-Central University for Nationalities, Wuhan, People’s Republic of China
| | - Wenjie Wan
- Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, People’s Republic of China
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, People’s Republic of China
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Wang M, Wu Y, Zhao J, Liu Y, Chen Z, Tang Z, Tian W, Xi Y, Zhang J. Long-term fertilization lowers the alkaline phosphatase activity by impacting the phoD-harboring bacterial community in rice-winter wheat rotation system. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 821:153406. [PMID: 35092777 DOI: 10.1016/j.scitotenv.2022.153406] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2021] [Revised: 01/16/2022] [Accepted: 01/21/2022] [Indexed: 06/14/2023]
Abstract
PhoD-harboring bacteria and the secreted alkaline phosphatases (ALP) are crucial in the regulation of soil phosphorus (P) cycling. However, the influential factors of these crucial indicators and their internal interactions remain controversial. Here, a long-term field experiment containing different fertilization regimes was conducted (chemical, organic, and no fertilizer applied). The results indicated that the richness and diversity of phoD-harboring bacterial community were significantly decreased after long-term fertilization. The applied fertilizer promoted the growth of competitive species, while phoD-harboring bacteria lost the advantage to outcompete other microorganisms after long-term fertilization. The decreased ALP activity was caused by the declined phoD gene abundance, which is attributed to the comprehensive effects of soil organic C (SOC), total nitrogen (TN), and various forms of P. The random forest models identified SOC, TN, and available P (AP) to be the dominant environmental factors in shaping the phoD-harboring bacterial community. In addition, some other forms of P such as organic P (Po), inorganic P (Pi) or total P (TP) also exerted significant effects. Different fertilization regimes changed the keystone genera that contributed significantly to soil ALP activities, while Pseudolabrys and Pseudomonas were predicted to be the most important genera regardless of different fertilization regimes. This study extends the understanding of the main process and mechanisms of P mobilization in response to different fertilization regimes.
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Affiliation(s)
- Mengmeng Wang
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Yuncheng Wu
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Jiayin Zhao
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Yu Liu
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Zhe Chen
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Zhaoyang Tang
- Key Laboratory of Vector Biology and Pathogen Control of Zhejiang Province, College of Life Sciences, Huzhou University, Huzhou 313000, China
| | - Wei Tian
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China.
| | - Yunguan Xi
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Jibing Zhang
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
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Chen J, Wang P, Wang C, Wang X, Gao H, Cui G, Liu S, Yuan Q. How dam construction affects the activity of alkaline phosphatases in reservoir sediments: A study of two highly regulated rivers. ENVIRONMENTAL RESEARCH 2022; 207:112236. [PMID: 34678255 DOI: 10.1016/j.envres.2021.112236] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Revised: 10/15/2021] [Accepted: 10/16/2021] [Indexed: 06/13/2023]
Abstract
Dam construction causes phosphorus (P) accumulation in reservoir sediments and significantly affects the generation of available P. However, the effect of dam construction on the activity of sediment alkaline phosphatase (ALP), which is encoded by the bacterial phoD gene and participates in P mineralization, in river sediments remains unclear. Here, we investigated the ALP activities in 78 sediment samples collected from the cascade reservoir regions located in the Lancang River and the Jinsha River, two highly regulated rivers in southwestern China. The abundance and community composition of phoD-harboring bacteria were determined based on the phoD gene using quantitative real-time PCR and MiSeq sequencing, respectively. Comparison of control and affected sites indicated that dam construction significantly increased sediment ALP activity in both rivers. The abundances of phoD-harboring bacteria increased and their community compositions varied in response to dam construction; the relative abundances of the dominant genera Methylobacterium and Bradyrhizobium were particularly higher in affected site than control site. Co-occurrence network analyses revealed much higher network connectivity and relative abundances of keystone species in affected sites. Some microbial factors including phoD-harboring bacterial abundances, network clustering coefficients, and relative abundance of keystone species were positively correlated with ALP activity. The relative abundance of keystone species was identified as the most important microbial factor contributing to variation in ALP activity based on structural equation modeling analysis. These findings enhance our understanding of how dam construction affects the functions of phoD-harboring bacteria and their role in the P biogeochemical cycle in highly regulated rivers.
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Affiliation(s)
- Juan Chen
- Key Laboratory of Integrated Regulation and Resource Department on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, 1 Xikang Road, Nanjing, 210098, PR China.
| | - Peifang Wang
- Key Laboratory of Integrated Regulation and Resource Department on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, 1 Xikang Road, Nanjing, 210098, PR China.
| | - Chao Wang
- Key Laboratory of Integrated Regulation and Resource Department on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, 1 Xikang Road, Nanjing, 210098, PR China
| | - Xun Wang
- Key Laboratory of Integrated Regulation and Resource Department on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, 1 Xikang Road, Nanjing, 210098, PR China
| | - Han Gao
- Key Laboratory of Integrated Regulation and Resource Department on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, 1 Xikang Road, Nanjing, 210098, PR China
| | - Ge Cui
- Key Laboratory of Integrated Regulation and Resource Department on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, 1 Xikang Road, Nanjing, 210098, PR China
| | - Sheng Liu
- Key Laboratory of Integrated Regulation and Resource Department on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, 1 Xikang Road, Nanjing, 210098, PR China
| | - Qiusheng Yuan
- Key Laboratory of Integrated Regulation and Resource Department on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, 1 Xikang Road, Nanjing, 210098, PR China
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Shi W, Xing Y, Zhu Y, Gao N, Ying Y. Diverse responses of pqqC- and phoD-harbouring bacterial communities to variation in soil properties of Moso bamboo forests. Microb Biotechnol 2022; 15:2097-2111. [PMID: 35298867 PMCID: PMC9249317 DOI: 10.1111/1751-7915.14029] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 03/02/2022] [Accepted: 03/03/2022] [Indexed: 11/30/2022] Open
Abstract
Phosphate‐mobilizing bacteria (PMB) play a critical role in the regulation of phosphorus availability in the soil. The microbial genes pqqC and phoD encode pyrroloquinoline quinone synthase and bacterial alkaline phosphatase, respectively, which regulate inorganic and organic phosphorus mobilization, and are therefore used as PMB markers. We examined the effects of soil properties in three Moso bamboo forest sites on the PMB communities that were profiled using high‐throughput sequencing. We observed differentiated responses of pqqC‐ and phoD‐harbouring PMB communities to various soil conditions. There was significant variation among the sites in the diversity and structure of the phoD‐harbouring community, which correlated with variation in phosphorus levels and non‐capillary porosity; soil organic carbon and soil water content also affected the structure of the phoD‐harbouring community. However, no significant difference in the diversity of pqqC‐harbouring community was observed among different sites, while the structure of the pqqC‐harbouring bacteria community was affected by soil organic carbon and soil total nitrogen, but not soil phosphorus levels. Overall, changes in soil conditions affected the phoD‐harbouring community more than the pqqC‐harbouring community. These findings provide a new insight to explore the effects of soil conditions on microbial communities that solubilize inorganic phosphate and mineralize organic phosphate.
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Affiliation(s)
- Wenhui Shi
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, China
| | - Yijing Xing
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, China
| | - Ying Zhu
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, China
| | - Ning Gao
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, China
| | - Yeqing Ying
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, China
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Zhao X, Zhang Y, Cui Z, Peng L, Cao C. Dynamics of phoD- and gcd-Harboring Microbial Communities Across an Age Sequence of Biological Soil Crusts Under Sand-Fixation Plantation. Front Microbiol 2022; 13:831888. [PMID: 35308398 PMCID: PMC8931599 DOI: 10.3389/fmicb.2022.831888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Accepted: 02/16/2022] [Indexed: 11/29/2022] Open
Abstract
Biological soil crusts (BSCs) are important for restoring vegetation and improving soil fertility in arid or semiarid desertified land. However, studies on the contribution of BSC microbes to phosphorus (P) transformation remains limited. The microbial diversity involved in P transformation and its dynamic along BSC development should be examined to further understand the microbial regulatory mechanism of the P-cycling process. This paper investigates the soil properties, P fractions, and potential of P transformation across a chronosequence (0-, 8-, 20-, and 35-year) of the BSC under Caragana microphylla plantation on the moving sand dunes in Horqin Grassland, China. An abundance of phoD and gcd genes was detected, and the diversities and structures of phoD- and gcd-haboring microbial communities were illustrated via high-throughput sequencing. Soil nutrient content, activity of alkaline phosphomonoesterase, potential of organic P (OP) mineralization, and the abundance of phoD and gcd genes all linearly increased along with BSC age. The microbial quantity and species diversity of the phoD community were greater than those of gcd. BSC development increased the availability of inorganic P (IP) fractions, and both NaHCO3-Pi and NaOH-Pi were positively correlated with the abundance of the two genes and the activity of alkaline phosphomonoesterase. The phyla of Actinobacteria, Planctomycetes, and Proteobacteria and the family of Streptomycetaceae were the most dominant taxa in the phoD community, Proteobacteria was the dominant phylum in the gcd community in BSC soils, and Rhizobium and Planctomyces were the most dominant genera. The dominant taxa quantitatively responded to soil property improvement, but the basic compositions and dominant taxa did not change along with BSC development. The structures of phoD and gcd communities were linked to soil properties, and pH available K, and total K tend to be the direct determining factors.
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The impact of different rotation regime on the soil bacterial and fungal communities in an intensively managed agricultural region. Arch Microbiol 2022; 204:142. [PMID: 35043270 DOI: 10.1007/s00203-021-02615-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Revised: 11/26/2021] [Accepted: 11/29/2021] [Indexed: 12/12/2022]
Abstract
The continuous wheat-maize planting has led to the increase in epidemic frequency of wheat diseases under climate change. Analyzation of the soil microbial composition in different rotation crops is essential to select alternative rotation regime. This study investigated the bacterial and fungal community abundance and composition, and potential microbe-microbe interactions in three rotations, including wheat-maize → spring maize (WMFS), wheat-soybean (WS) and continuous wheat-maize (WM) planting. The results revealed that there were 110, 156, and 195 bacterial, and 17, 8, and 15 fungal operational taxonomic units respectively enriched by WMFS, WS, and WM. WM increased the relative abundance of Actinobacteria and α-Proteobacteria in wheat, and the relative abundance and copy number of genus Fusarium in maize. WMFS and WS could decrease the abundance of Fusarium in summer-crop across the growth stages and in wheat at elongation. WS also increased the copy number of ammonia-oxidizing bacteria in wheat at flowering and harvest. Network analysis revealed that WM resulted in simple and isolated wheat network with small modules dominating and none Nitrospirae and β-Proteobacteria in the main modules. WS formed interconnected and intricate wheat network with the maximum number of large modules and module connectors. Under WS, positive correlation between antagonistic Streptomyces (Actinobacteria) and genus Fusarium was found in wheat. Soil physicochemical properties explained the majority of the variation in bacterial and fungal β-diversity in wheat (P < 0.01). Rotation regime switching from WM to WMFS and WS may effectively damp the risk of wheat disease and maintain the wheat yield in intensive cereal production.
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Zhang M, Jin BJ, Bi QF, Li KJ, Sun CL, Lin XY, Zhu YG. Variations of earthworm gut bacterial community composition and metabolic functions in coastal upland soil along a 700-year reclamation chronosequence. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 804:149994. [PMID: 34798714 DOI: 10.1016/j.scitotenv.2021.149994] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2021] [Revised: 08/23/2021] [Accepted: 08/24/2021] [Indexed: 06/13/2023]
Abstract
Most ecosystem functions attributed to earthworms are mediated by their internal microbiomes, and these are sensitive to disturbances in the external environment. However, few studies have focused on the response of the earthworm gut microbiome to soil chronosequence. Here, we used 16S rRNA high-throughput sequencing and high-throughput quantitative PCR to investigate the variations in bacterial communities and functional gene abundance in earthworm (Lumbricina sp.) guts and upland soils under 700 years of cultivation. Our results indicated that 700 years of upland cultivation significantly shaped bacterial communities and increased functional traits of microbes in earthworm guts, which were more sensitive to cultivation age compared to the surrounding soils. The earthworm gut bacterial community changed rapidly over the first 300 years of cultivation and then changed slowly in the following centuries. Along with the cultivation age, we also observed that the earthworm gut microbiota was successive towards a copiotrophic strategy (e.g., Xanthobacteraceae, Nocardioidaceae, Hyphomicrobiaceae, and Bacillaceae) and higher potential functions (e.g., ureC, nirS, nosZ, phoD, and pqqC). Furthermore, canonical correspondence analysis further revealed that soil pH, C:N ratio, soil organic carbon, and total nitrogen were key abiotic drivers shaping earthworm gut bacterial communities. Taken together, this study reveals the succession of bacterial communities and potential functions in earthworm guts within 700 years of upland cultivation, which may provide a broader space for us to rationally exploit and utilize the interactions between soil and earthworm gut microbiotas to benefit the soil nutrient cycling process.
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Affiliation(s)
- Miao Zhang
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Bing-Jie Jin
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Qing-Fang Bi
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China; Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, PR China; Max Planck Institute for Biogeochemistry, Jena 07745, Germany
| | - Ke-Jie Li
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China; Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, PR China
| | - Cheng-Liang Sun
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Xian-Yong Lin
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China.
| | - Yong-Guan Zhu
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China; Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, PR China; State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, PR China
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Wang M, Fu Y, Wang Y, Li Y, Shen J, Liu X, Wu J. Pathways and mechanisms by which biochar application reduces nitrogen and phosphorus runoff losses from a rice agroecosystem. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 797:149193. [PMID: 34311360 DOI: 10.1016/j.scitotenv.2021.149193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 07/08/2021] [Accepted: 07/18/2021] [Indexed: 06/13/2023]
Abstract
Biochar application has the potential to reduce nitrogen (N) and phosphorus (P) losses in agricultural runoff, but little is known about how and to what extent biochar is effective in rice agroecosystems. In this study, in a typical double-rice cropping system, N and P runoff losses and soil carbon (C), N, and P contents (soil CNP contents) were observed under three different biochar application rates (0, 24, and 48 t ha-1, which were defined as CK, LB, and HB, respectively) from 2017 to 2019. The results showed that the two-year averages of soil total organic C (TOC), total N (TSN), total P (TSP), available P (Olsen P), microbial biomass N (MBN), and microbial biomass P (MBP) contents were generally higher in the biochar treatments than in CK (P < 0.05). Specifically, the TSP, TOC, and MBN contents increased with the increasing biochar application rate, thus demonstrating the significant effects of biochar application on the paddy soil CNP contents and composition. The HB and LB treatments reduced the seasonal mean runoff flow-weighted total N (TN_wc) and total P (TP_wc) concentrations by 32.4% and 42.1%, respectively, compared to CK. Structural equation modeling (SEM) further revealed that the paths and mechanisms by which biochar reduced the TN_wc and TP_wc were different, depending on the different application rates. HB reduced the TN_wc mainly through the direct absorption of N, followed by the indirect inhibition of N mineralization, whereas LB decreased the TP_wc mainly through the strong P sorption capacity of the biochar. The direct effect of HB on the TN_wc was 1.58 times as strong as the indirect effect (path coefficients: -0.68 vs. 0.43, respectively), and the direct effect of LB on the TP_wc was 1.78 times as strong as the indirect effect (path coefficients: -0.89 vs. 0.50, respectively). Given the distinct pathways and mechanisms by which biochar reduced NP runoff losses, in practice, the biochar application rate should be optimized according to a targeted priority of reducing either N or P runoff losses in rice agroecosystems.
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Affiliation(s)
- Meihui Wang
- Key Laboratory of Environment Change and Resources Use in Beibu Gulf (Nanning Normal University), Ministry of Education, Nanning 530001, China; Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Guangxi Key Laboratory of Earth Surface Processes and Intelligent Simulation, Nanning Normal University, Nanning 530001, China
| | - Yuxi Fu
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yi Wang
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China.
| | - Yong Li
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China.
| | - Jianlin Shen
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China
| | - Xinliang Liu
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China
| | - Jinshui Wu
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China
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Wan W, He D, Li X, Xing Y, Liu S, Ye L, Yang Y. Linking rare and abundant phoD-harboring bacteria with ecosystem multifunctionality in subtropical forests: From community diversity to environmental adaptation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 796:148943. [PMID: 34265611 DOI: 10.1016/j.scitotenv.2021.148943] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 07/05/2021] [Accepted: 07/05/2021] [Indexed: 06/13/2023]
Abstract
Environmental factor-driven bacterial diversity could be an indicator for evaluating ecosystem multifunctionality (EMF). However, little is known about interconnections between EMF and the community diversity of rare and abundant phoD-harboring bacteria responsible for organic phosphorus mineralization. Illumina MiSeq sequencing and multiple statistical analyses were used to evaluate diversity maintenance of rare and abundant phoD-harboring bacteria at both taxonomic and phylogenetic levels and their contributions to soil EMF in the subtropical Shennongjia primeval forest. We found that rare phoD-harboring bacteria exhibited higher community diversity and broader environmental breadths than abundant ones, while abundant phoD-harboring bacteria showed closer phylogenetic clustering and stronger phylogenetic signals of ecological preferences than rare ones. Stochastic processes dominated community assemblies of rare and abundant phoD-harboring bacteria, and temperature was an important environmental variable adjusting the balance between stochastic and deterministic processes. The taxonomic α-diversity of rare phoD-harboring bacteria showed larger contribution to soil EMF than that of abundant ones, while the phylogenetic α-diversity of abundant phoD-harboring bacteria contributed significantly more than that of rare ones. Our findings enrich knowledge of the environmental adaptation of rare and abundant phoD-harboring bacteria, and highlight linkages between soil EMF and the diversity of rare and abundant phoD-harboring bacteria at both the taxonomic and phylogenetic levels.
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Affiliation(s)
- Wenjie Wan
- Key Laboratory of Aquatic Botany and Watershed Ecology Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, PR China; Center of the Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, PR China
| | - Donglan He
- College of Life Science, South-Central University for Nationalities, Wuhan 430070, PR China
| | - Xiang Li
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, PR China
| | - Yonghui Xing
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, PR China
| | - Song Liu
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, PR China
| | - Luping Ye
- Key Laboratory of Aquatic Botany and Watershed Ecology Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, PR China; Center of the Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, PR China; Key Laboratory of Urban Land Resources Monitoring and Simulation, Ministry of Natural Resources, Shenzhen 518040, PR China
| | - Yuyi Yang
- Key Laboratory of Aquatic Botany and Watershed Ecology Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, PR China; Center of the Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, PR China.
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Flooding and straw returning regulates the partitioning of soil phosphorus fractions and phoD-harboring bacterial community in paddy soils. Appl Microbiol Biotechnol 2021; 105:9343-9357. [PMID: 34757435 DOI: 10.1007/s00253-021-11672-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2021] [Revised: 10/26/2021] [Accepted: 10/28/2021] [Indexed: 10/19/2022]
Abstract
Flooding and straw returning are effective agricultural practices in promoting phosphorus (P) availability in paddy soils. However, little is known about the effects of these practices and their interaction on the soil P pools and functional microbes responsible for soil P mobilization. Our 4-year paddy field experiment aimed to analyze the responses of soil P fractions and phoD-harboring bacterial communities in a double-rice cropping system to intermittent flooding (IF) and continuous flooding (CF), in plots with (+ S) and without (-S) straw return. Compared to IF, CF significantly increased soil citrate-P and marginally decreased the HCl-P fractions, suggesting that the stable inorganic P pools are transferred to labile inorganic P at lower redox potentials. Compared to the -S treatments, + S treatments significantly increased the labile organic fractions (enzyme-P). Correspondingly, a decreased soil total organic P concentration was observed in + S treatment. Additionally, + S treatment significantly increased the activity of acid phosphomonoesterase and alkaline phosphomonoesterase and the abundance of phoD-harboring bacteria. These results indicated that straw promoted organic P minimization to release orthophosphate. The diversity of the phoD-harboring bacteria and complexity of the co-occurrence network decreased under the CF + S treatment; however, all keystone species of the phoD-harboring bacteria were retained in this oxygen-deficient environment. This study highlights that irrigation regimes mediate the processes of inorganic P mobilization, while straw returns regulate the processes of organic P mineralization. Additionally, flooding could be a more effective agricultural practice than straw returning to promote soil P availability in paddy soils. KEY POINTS: •Soil P pools and phoD-harboring bacteria communities were assessed. •Straw return mainly affects the mineralization of organic P. •Continuous flooding mainly affects the mobilization of inorganic P.
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He D, Wan W. Phosphate-Solubilizing Bacterium Acinetobacter pittii gp-1 Affects Rhizosphere Bacterial Community to Alleviate Soil Phosphorus Limitation for Growth of Soybean ( Glycine max). Front Microbiol 2021; 12:737116. [PMID: 34630363 PMCID: PMC8498572 DOI: 10.3389/fmicb.2021.737116] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Accepted: 08/27/2021] [Indexed: 11/21/2022] Open
Abstract
Phosphorus (P) availability is a major restriction to crop production, and phosphate-solubilizing bacteria (PSBs) in soils are responsible for P turnover. However, it remains unknown whether the application of PSB can facilitate both inorganic and organic P transformation and enhance function of plant rhizosphere bacteria. In this study, we applied Illumina MiSeq sequencing, plate-colony counting, quantitative PCR, and multiple ecological analyses. We found that the inoculation of PSB Acinetobacter pittii gp-1 significantly promoted the growth of soybean represented by better vegetation properties (e.g., plant height and root P) and increased activities of phosphatase (4.20–9.72 μg/g/h) and phytase (0.69–1.53 μmol/g/day) as well as content of indole acetic acid (5.80–40.35 μg/g/h). Additionally, the application of strain A. pittii gp-1 significantly increased abundances of both inorganic and organic P-cycling-related genes (i.e., phoD, bpp, gcd, and pstS). More importantly, the application of A. pittii gp-1 could increase the function represented by P-cycling-related enzymes (e.g., phosphotransferase) of rhizosphere bacterial community based on functional profiling. To our knowledge, this is the first report that the application of PSB A. pittii promotes inorganic and organic P utilization and increases the function of rhizosphere bacterial community. Therefore, the PSB A. pittii gp-1 could be a good candidate for the promotion of soybean growth.
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Affiliation(s)
- Donglan He
- College of Life Science, South-Central University for Nationalities, Wuhan, China
| | - Wenjie Wan
- Key Laboratory of Aquatic Botany and Watershed Ecology Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.,Center of the Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, China.,State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China
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Zhang Y, Liu X, Guo J, Zhao J, Wang S, Zheng Z, Jiang Q, Ren F. Responses of Root Endophytes to Phosphorus Availability in Peach Rootstocks With Contrasting Phosphorus-Use Efficiencies. FRONTIERS IN PLANT SCIENCE 2021; 12:719436. [PMID: 34646286 PMCID: PMC8502846 DOI: 10.3389/fpls.2021.719436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Accepted: 08/23/2021] [Indexed: 06/13/2023]
Abstract
Phosphorus (P) is an important macronutrient for all lives, but it is also a finite resource. Therefore, it is important to understand how to increase the P availability and plant uptake. The endophytes can help host plants to improve P uptake and will be apparently affected by plant genotypes. To investigate the mechanism of root endophytes in promoting P uptake of peach rootstocks, we analyzed the variations of the root endophytic fungal and bacterial communities of peach rootstocks with different P efficiencies under high or low level of P addition. Results showed that Proteobacteria was the dominant bacterial phylum in the roots of all rootstocks under the two levels of P addition. At low P level, the abundance of Actinoplanes in phosphorus-inefficiency root system was apparently higher than that at high P level. Actinoplanes produced important secondary metabolites, improving the stress resistance of plants. Under high P condition, the abundance of Ferrovibrio was higher in Qing Zhou Mi Tao than in Du Shi. Fe oxides considerably reduced the availability of applied P, which partially explained why the P utilization in Qing Zhou Mi Tao is inefficient. Further, Ascomycota was the dominant fungal phylum in the roots of all rootstocks under different levels of P addition. The fungi community of roots varied in different rootstocks at each P level, but was similar for the same rootstock at different P levels, which indicated that genotype had a greater effect than P addition on the fungal community of peach rootstocks.
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Affiliation(s)
- Yu Zhang
- Beijing Academy of Forestry and Pomology Sciences, Beijing, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing, China
- Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing, China
| | - Xin Liu
- Beijing Academy of Forestry and Pomology Sciences, Beijing, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing, China
- Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing, China
| | - Jiying Guo
- Beijing Academy of Forestry and Pomology Sciences, Beijing, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing, China
- Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing, China
| | - Jianbo Zhao
- Beijing Academy of Forestry and Pomology Sciences, Beijing, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing, China
- Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing, China
| | - Shangde Wang
- Beijing Academy of Forestry and Pomology Sciences, Beijing, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing, China
- Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing, China
| | - Zhiqin Zheng
- Beijing Academy of Forestry and Pomology Sciences, Beijing, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing, China
- Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing, China
| | - Quan Jiang
- Beijing Academy of Forestry and Pomology Sciences, Beijing, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing, China
- Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing, China
| | - Fei Ren
- Beijing Academy of Forestry and Pomology Sciences, Beijing, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing, China
- Beijing Engineering Research Center for Deciduous Fruit Trees, Beijing, China
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Metagenomic Analysis of Bacterial Communities in Agricultural Soils from Vietnam with Special Attention to Phosphate Solubilizing Bacteria. Microorganisms 2021; 9:microorganisms9091796. [PMID: 34576692 PMCID: PMC8472641 DOI: 10.3390/microorganisms9091796] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 07/29/2021] [Accepted: 08/20/2021] [Indexed: 12/28/2022] Open
Abstract
Bacterial communities can promote increased phosphorus (P) availability for plants and microbes in soil via various mechanisms of phosphate solubilization. The production of extracellular phosphatases releases available P through the hydrolysis of organic P. Examining the abundance and diversity of the bacterial community, including phosphate solubilizing bacteria in soil, may provide valuable information to overcome P scarcity in soil ecosystems. Here, the diversity and relative abundance of bacterial phyla and genera of six agricultural soil samples from Vietnam were analysed by next generation sequencing of the 16S rRNA gene. Phosphatase activities of each soil were compared with physico-chemical parameters and the abundance of the alkaline phosphatase gene phoD. We showed the dominance of Chloroflexi, Proteobacteria, Actinobacteria, Acidobacteria and Firmicutes. Total nitrogen positively correlated with phyla Proteobacteria, Acidobacteria, Firmicutes and Planctomycetes. The abundance of several genera of Proteobacteria showed positive relationship with the copy number of the phoD gene. The abundance of several taxa positively correlated with silt content, while a negative relationship of Proteobacteria was found with sand content. Our results demonstrated the clear influence of soil physico-chemical properties on the abundance of various bacterial taxa including those potentially involved in phosphate solubilization.
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Tian J, Kuang X, Tang M, Chen X, Huang F, Cai Y, Cai K. Biochar application under low phosphorus input promotes soil organic phosphorus mineralization by shifting bacterial phoD gene community composition. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 779:146556. [PMID: 34030240 DOI: 10.1016/j.scitotenv.2021.146556] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Revised: 03/09/2021] [Accepted: 03/13/2021] [Indexed: 05/05/2023]
Abstract
Biochar has the potential to enhance microbial-mediated phosphorus (P) cycling in soils, but the underlying mechanisms remain largely unknown. We hypothesized that biochar amendment could enhance the production of acid and alkaline phosphomonoesterase, phosphodiesterase and P mineralization, which may vary depending on the P input. To test this hypothesis, we assessed the impacts of rice straw biochar application (0 and 4%) under different P-input rates (0, 30 and 90 kg P ha-1) on the relationships among P fractions, phosphatase activities and alkaline phosphomonoesterase-encoding bacterial (phoD gene) communities in an acidic soil. Biochar application under low P input (< 30 kg P ha-1) significantly increased the activities of phosphodiesterase and alkaline phosphomonoesterase but not that of acid phosphomonoesterase and depleted organic P. The results from the structural equation model revealed a dominant role of alkaline phosphomonoesterase in P mineralization. The increase in alkaline phosphomonoesterase activity was not related to an increase in phoD gene abundance but was due to a shift in community composition, which was primarily driven by the soil C:P ratio. Microbial network analysis demonstrated a more complex phoD gene community with more functionally interrelated groups as a result of biochar application under low P input than under high P input. Moreover, the specific enrichment of Micromonosporaceae under C-rich and P-poor conditions may play a critical role in alkaline phosphomonoesterase production and potential P mineralization. In conclusion, we demonstrated that biochar application under low P input supports a more organized phoD gene community and preferentially enriches taxa in terms of their capacity for P mineralization, which in turn may enhance P bioavailability and plant P acquisition.
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Affiliation(s)
- Jihui Tian
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China; Guangdong Provincial Key Laboratory of Eco-Circular Agriculture, South China Agricultural University, Guangzhou 510642, China.
| | - Xizhi Kuang
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Mengtian Tang
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Xiaodong Chen
- Institute of Environment, Resource, Soil and Fertilizer, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
| | - Fei Huang
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Yixia Cai
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China; Guangdong Provincial Key Laboratory of Eco-Circular Agriculture, South China Agricultural University, Guangzhou 510642, China
| | - Kunzheng Cai
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China; Guangdong Provincial Key Laboratory of Eco-Circular Agriculture, South China Agricultural University, Guangzhou 510642, China.
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Liang Y, Pan F, Ma J, Yang Z, Yan P. Long-term forest restoration influences succession patterns of soil bacterial communities. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:20598-20607. [PMID: 33405107 DOI: 10.1007/s11356-020-11849-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Accepted: 11/25/2020] [Indexed: 06/12/2023]
Abstract
Microorganisms have a major influence on soil biogeochemical processes and vegetation establishment. However, their long-term succession patterns and short-term turnover are not well-understood in artificial forest ecosystems. The aim of the present study was to investigate the effects of stand ages and seasons on soil bacterial community in a chronosequence of Chinese Pinus massoniana plantations, in 3, 19, and 58-year-old plots. Soil physicochemical properties were measured in three stand ages between two seasons (dry-rainy). The soil bacterial community composition was determined by 16S rRNA Illumina HiSeq sequencing. The results showed that soil bacterial community diversity and structure significantly differed among three stand ages, but was not different between two seasons. The diversity of soil bacterial community increased with an increase in stand age. Proteobacteria, Acidobacteria, and Actinobacteria were the dominant phyla in the three stands. The soil bacterial community structure in all the stands was influenced by soil pH, available phosphorus content, and litter phosphorus content. With the accumulation of available phosphorus, the relative abundance of Acidobacteria decreased, while that of Proteobacteria increased. These shifts suggested that dominant microbial communities transitioned from oligotrophic to copiotrophic with increasing stand age. Extending rotation periods could increase soil bacterial diversity, and in turn help improving soil quality of P. massoniana plantations.
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Affiliation(s)
- Yueming Liang
- Key Laboratory of Karst Dynamics, Ministry of Natural and Resources & Guangxi Zhuangzu Autonomy Region, Institute of Karst Geology, Chinese Academy of Geological Sciences, Guilin, 541000, China
| | - Fujing Pan
- College of Environmental and Engineering, Guangxi Key Laboratory of Theory and Technology for Environmental Pollution Control, Guilin University of Technology, Guilin, 541000, China.
| | - Jiangming Ma
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of Education, Guangxi Normal University, Guilin, 541000, China
| | - Zhangqi Yang
- Guangxi Forestry Research Institute, Nanning, 530000, China
| | - Peidong Yan
- Guangxi Forestry Research Institute, Nanning, 530000, China
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Chen GL, Xiao L, Xia QL, Wang Y, Yuan JH, Chen H, Wang SQ, Zhu YY. Characterization of Different Phosphorus Forms in Flooded and Upland Paddy Soils Incubated with Various Manures. ACS OMEGA 2021; 6:3259-3266. [PMID: 33553944 PMCID: PMC7860232 DOI: 10.1021/acsomega.0c05748] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Accepted: 01/08/2021] [Indexed: 06/12/2023]
Abstract
Phosphorus (P) is an essential nutrient for crop production, and animal manures are rich in P. When using animal manures as alternatives to synthetic fertilizers, it is important to know the kinetics of P release from different animal manures and the forms, amounts, and dynamics of P in manure-treated soils. We chose four types of manure, viz., pig manure (PM), chicken manure (CM), dairy manure (DM), and commercial organic compost (OM), and evaluated the P release rate and availability in water solution and flooded/upland paddy soils. The WEP/total P (TP) and the water-extractable P (WEP) concentrations are highest for OM with the order: OM > PM > CM > DM. An increase in soil Olsen-P concentration was observed for the addition of manure with a varying application rate of P from low to moderate to high. The release capacity of Olsen-P in flooded conditions was higher than that in upland conditions. Under the flooded soil, PM and OM have faster release rates than CM and OM in the upland soil. Moreover, PM significantly increased available P by 29% in the flooded paddy soil while moderately inorganic P increased by 17% in the upland paddy soil. Olsen-P has a significant linear relationship with available P (Resin-P + NaHCO3-Pi; R 2 = 0.104; P < 0.01) and moderately inorganic P (NaOH-Pi + HCl-P; R 2 = 0.286; P < 0.01). The structural equation model showed that the organic input was beneficial to the conversion of moderately inorganic P to available P. Our results indicate that PM amendment promotes the release of available P in paddy soil.
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Affiliation(s)
- Guang-Lei Chen
- Jiangsu
Collaborative Innovation Center for Solid Organic Waste Resource Utilization,
College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing 210095, China
- State
Key Laboratory of Soil and Sustainable Agriculture, Changshu National
Agro-Ecosystem Observation and Research Station, Institute of Soil
Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Liang Xiao
- Jiangsu
Collaborative Innovation Center for Solid Organic Waste Resource Utilization,
College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing 210095, China
| | - Qiu-Lin Xia
- Jiangsu
Collaborative Innovation Center for Solid Organic Waste Resource Utilization,
College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing 210095, China
| | - Yu Wang
- State
Key Laboratory of Soil and Sustainable Agriculture, Changshu National
Agro-Ecosystem Observation and Research Station, Institute of Soil
Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Jia-Hui Yuan
- State
Key Laboratory of Soil and Sustainable Agriculture, Changshu National
Agro-Ecosystem Observation and Research Station, Institute of Soil
Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Hao Chen
- State
Key Laboratory of Soil and Sustainable Agriculture, Changshu National
Agro-Ecosystem Observation and Research Station, Institute of Soil
Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Shen-Qiang Wang
- State
Key Laboratory of Soil and Sustainable Agriculture, Changshu National
Agro-Ecosystem Observation and Research Station, Institute of Soil
Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Yi-Yong Zhu
- Jiangsu
Collaborative Innovation Center for Solid Organic Waste Resource Utilization,
College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing 210095, China
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47
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Wan W, Liu S, Li X, Xing Y, Chen W, Huang Q. Dispersal limitation driving phoD-harboring bacterial community assembly: A potential indicator for ecosystem multifunctionality in long-term fertilized soils. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 754:141960. [PMID: 32911145 DOI: 10.1016/j.scitotenv.2020.141960] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2020] [Revised: 08/18/2020] [Accepted: 08/22/2020] [Indexed: 06/11/2023]
Abstract
Elucidating the association between the phoD-harboring bacterial community and soil ecosystem multifunctionality, which is crucial for the comprehension of the phoD-harboring bacterial role and contribution in agro-ecosystems, is an essential but rarely investigated subject. Here, we explored the phoD-harboring bacterial community in long-term fertilized soils using amplicon sequencing and multiple analysis methods including the null, neutral, and niche breadth models. We found distance-decay relationships of community similarities against geographical distance on a large spatial scale. Community dissimilarity was significantly lower in the organic fertilization treatment (M) than that in the no (CK) and mineral (NPK) fertilizer treatments. Dispersal limitation governed community assembly in CK, M, NPK, and whole samples, with corresponding relative contributions of 58.2%, 58.3%, 52.8%, and 54.4%, respectively. Electrical conductivity, total carbon, total nitrogen, total phosphorus, organic phosphorus, and available phosphorus were responsible for the community assembly of phoD-harboring bacteria. Multiple model analysis revealed that the phoD-harboring bacterial community was less constrained by the environment and presented flexible metabolism in soils with the M fertilization treatment. phoD-harboring bacteria presented more conflicting interaction and exhibited significantly higher ecosystem multifunctionality in soils with the M fertilization treatment than that in the CK and NPK fertilization treatments. To our knowledge, this is the first study to report a less environment-constrained phoD-harboring bacterial community might lead to a larger difference in ecosystem multifunctionality in fertilized soils. Therefore, we suggest phoD-harboring bacterial community assembly could be a biotic indicator for evaluating soil ecosystem multifunctionality.
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Affiliation(s)
- Wenjie Wan
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, PR China
| | - Song Liu
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, PR China
| | - Xiang Li
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, PR China
| | - Yonghui Xing
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, PR China
| | - Wenli Chen
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, PR China.
| | - Qiaoyun Huang
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, PR China; Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture, Huazhong Agricultural University, Wuhan 430070, PR China
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48
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Zhang S, Wang J, Chen X, Gui J, Sun Y, Wu D. Industrial-scale food waste composting: Effects of aeration frequencies on oxygen consumption, enzymatic activities and bacterial community succession. BIORESOURCE TECHNOLOGY 2021; 320:124357. [PMID: 33166884 DOI: 10.1016/j.biortech.2020.124357] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2020] [Revised: 10/26/2020] [Accepted: 10/28/2020] [Indexed: 06/11/2023]
Abstract
Industrial-scale composting of food waste (FW) was performed at different aeration frequencies (C_5_25: 5 min aeration + 25 min interval, C_10_20: 10 min aeration + 20 min interval, C_15_15: 15 min aeration + 15 min interval and CK: stuffiness) to ascertain the optimal aeration frequency to accomplish polymerization and humification of compost. The tested aeration frequencies affected the oxygen uptake rate, oxygen spatial distribution, and ultimately influenced the humification of compost. Extensive aeration was not beneficial to accumulate nitrogen and phosphorus during composting. Aeration frequency influenced the succession of bacterial community primarily through affecting O2 concentration and the release of various enzymes by these bacteria. Regulating O2 concentration by adjusting aeration strategies may provide guidance for accelerating maturity of composting. Considering various factors, this paper recommends the scheme of heating period (C_5_25), thermophilic period (C_15_15) and psychrophilic period (no aeration).
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Affiliation(s)
- Shuchi Zhang
- College of Environmental and Resource Science, Zhejiang University, Hangzhou 310058, China.
| | - Jingli Wang
- College of Environmental and Resource Science, Zhejiang University, Hangzhou 310058, China.
| | - Xu Chen
- College of Environmental and Resource Science, Zhejiang University, Hangzhou 310058, China.
| | - Jiaxi Gui
- College of Environmental and Resource Science, Zhejiang University, Hangzhou 310058, China.
| | - Yue Sun
- College of Environmental and Resource Science, Zhejiang University, Hangzhou 310058, China.
| | - Donglei Wu
- College of Environmental and Resource Science, Zhejiang University, Hangzhou 310058, China.
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49
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Liang Y, Li M, Pan F, Ma J, Yang Z, Ling T, Qin J, Lu S, Zhong F, Song Z. Alkaline Phosphomonoesterase-Harboring Microorganisms Mediate Soil Phosphorus Transformation With Stand Age in Chinese Pinus massoniana Plantations. Front Microbiol 2020; 11:571209. [PMID: 33329428 PMCID: PMC7728850 DOI: 10.3389/fmicb.2020.571209] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Accepted: 11/04/2020] [Indexed: 12/05/2022] Open
Abstract
phoD-harboring microorganisms facilitate mineralization of organic phosphorus (P), while their role in the regulation of soil P turnover under P-limited conditions in Pinus massoniana plantations is poorly understood. The aim of the present study was to investigate the effects of stand age and season on soil P fractions and phoD-harboring microorganism communities in a chronosequence of Chinese P. massoniana plantations including 3, 19, and 58 years. The soil P fractions (i.e., CaCl2-P, citrate-P, enzyme-P, and HCl-P) varied seasonally, with the higher values observed in the rainy season. The concentrations of the fractions were higher in old plantation (OP) soils and lower in young planation (YP) soils in both seasons. The OTU abundances were negatively correlated with total available P concentration, while were positively correlated with alkaline phosphomonoesterase (ALP) activity at 0–10 cm soil depth. The results indicate that phoD-harboring microorganisms have great potential to mineralize organic P under P-poor conditions and highlights those microorganisms are indicators of P bioavailability in P. massoniana plantations.
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Affiliation(s)
- Yueming Liang
- Key Laboratory of Karst Dynamics, Ministry of Natural and Resources & Guangxi Zhuangzu Autonomy Region, Institute of Karst Geology, Chinese Academy of Geological Sciences, Guilin, China.,Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of Education, Guangxi Normal University, Guilin, China
| | - Mingjin Li
- Production and Operation Department, Zhenlong Forest Farm of Hengxian County, Nanning, China
| | - Fujing Pan
- College of Environmental and Engineering, Guangxi Key Laboratory of Theory and Technology for Environmental Pollution Control, Guilin University of Technology, Guilin, China
| | - Jiangming Ma
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of Education, Guangxi Normal University, Guilin, China
| | - Zhangqi Yang
- Engineering Research Center of Masson Pine of Guangxi, Guangxi Forestry Research Institute, Nanning, China
| | - Tianwang Ling
- Production and Operation Department, Zhenlong Forest Farm of Hengxian County, Nanning, China
| | - Jiashuang Qin
- Guangxi Institute of Botany, Chinese Academy of Sciences, Guilin, China
| | - Shaohao Lu
- Production and Operation Department, Zhenlong Forest Farm of Hengxian County, Nanning, China
| | - Fengyue Zhong
- Production and Operation Department, Zhenlong Forest Farm of Hengxian County, Nanning, China
| | - Zunrong Song
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of Education, Guangxi Normal University, Guilin, China
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50
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Qin X, Guo S, Zhai L, Pan J, Khoshnevisan B, Wu S, Wang H, Yang B, Ji J, Liu H. How long-term excessive manure application affects soil phosphorous species and risk of phosphorous loss in fluvo-aquic soil. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020; 266:115304. [PMID: 32805596 DOI: 10.1016/j.envpol.2020.115304] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 06/18/2020] [Accepted: 07/22/2020] [Indexed: 06/11/2023]
Abstract
The excessive application of manure has caused a high load of phosphorus (P) in the North China Plain. Having an understanding of how manure application affects soil P changes and its transport between different soil layers is crucial to reasonably apply manure P and reduce the associated loss. Based on our 28-year field experiments, the compositions and changes of P species and the risk of P loss under excessive manure treatments were investigated, i.e., no fertilizer (CK), mineral fertilizer NPK (NPK), NPK plus 22.5 t ha-1 yr-1 swine manure (LMNPK), and NPK plus 33.75 t ha-1 yr-1 swine manure (HMNPK). Manure application increased the content of orthophosphate and myo-inositol hexaphosphate (myo-IHP), especially the orthophosphate content exceeded 95%. The amount of orthophosphate in manure and the conversion of organic P to inorganic P in soil were the main reasons for the increased soil orthophosphate. Compared with NPK treatment, soil microbial biomass phosphorus and alkaline phosphatase activity in LMNPK and HMNPK treatments significantly increased. Compared with NPK treatment, a high manure application rate under HMNPK treatment could increase the abundance of organic P-mineralization gene phoD by 60.0% and decrease the abundance of inorganic P-solubilization gene pqqC by 45.9%. Due to the continuous additional manure application, soil P stocks significantly increased under LMNPK and HMNPK treatments. Furthermore, part of the P has been leached to the 60-80 cm soil layer. Segmented regression analysis indicated that CaCl2-P increased sharply when Olsen-P was higher than 25.1 mg kg-1, however the content of Olsen-P did not exceed this value until 10 years after consecutive excessive manure application. In order to improve soil P availability and decrease the risk of P loss, the manure application rate should vary over time based on soil physicochemical conditions, plants requirements, and P stocks from previous years.
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Affiliation(s)
- Xuechao Qin
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs/Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Shufang Guo
- Institute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650201, PR China
| | - Limei Zhai
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs/Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China.
| | - Junting Pan
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs/Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Benyamin Khoshnevisan
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs/Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Shuxia Wu
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs/Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Hongyuan Wang
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs/Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Bo Yang
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs/Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Jinghong Ji
- Institute of Soil Fertilizer and Environment Resources, Heilongjiang Academy of Agricultural Sciences, Harbin, 150086, China
| | - Hongbin Liu
- Key Laboratory of Nonpoint Source Pollution Control, Ministry of Agriculture and Rural Affairs/Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
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