Silicic acid: The omniscient molecule

Hydrogeochemical factors controlling the occurrence of chronic kidney disease of unknown etiology (CKDu)

Chronic kidney disease of unknown etiology (CKDu) has posed a serious threat to human health around the world. The link between the prevalence of CKDu and groundwater geochemistry is not well understood. To identify the potential geogenic risk factors, we collected 52 groundwater samples related to CKDu (CKDu groundwater) and 18 groundwater samples related to non-CKDu (non-CKDu groundwater) from the typical CKDu prevailing areas in Sri Lanka. Results demonstrated that CKDu groundwater had significantly higher Si (average 30.1 mg/L, p < 0.05) and F^- (average 0.80 mg/L, p < 0.05) concentrations than those of non-CKDu groundwater (average 21.0 and 0.45 mg/L, respectively), indicating that Si and F^- were the potential risk factors causing CKDu. The principal hydrogeochemical process controlling local groundwater chemistry was chemical weathering of silicates in Precambrian metamorphic rocks. Groundwater samples were mostly undersaturated with respect to amorphous silica and clay minerals such as talc and sepiolite, which was conducive to silicate weathering and elevated Si concentrations in groundwater. Decreased Ca²⁺ being facilitated by calcite precipitation and cation exchange between Ca²⁺ and Na⁺ favored fluorite dissolution and thus led to high groundwater F^- concentrations. Competitive adsorption between [Formula: see text] and F^- also enhanced the release of F^- from solid surfaces. This study highlights the CKDu potential risk factors regarding groundwater geochemistry and their enrichment factors, which helps in preventing the prevalence of CKDu.

Comparative transcriptomics provide new insights into the mechanisms by which foliar silicon alleviates the effects of cadmium exposure in rice

Silicon (Si) has been shown to alleviate Cd stress in rice. Here, we investigated the beneficial effects of foliar Si in an indica rice Huanghuazhan (HHZ). Our results showed that foliar Si increases the dry weight and decreases Cd translocation in Cd-exposed rice at the grain-filling stage only, implying that the filling stage is critical for foliar Si to reduce Cd accumulation. We also investigated the transcriptomics in flag leaves (FLs), spikelets (SPs), and node Is (NIs) of Cd-exposed HHZ after foliar Si application at the filling stage. Importantly, the gene expression profiles associated with the Si-mediated alleviation of Cd stress were tissue specific, while shared pathways were mediated by Si in Cd-exposed rice tissues. Furthermore, after the Si treatment of Cd-exposed rice, the ATP-binding cassette (ABC)-transporters were mostly upregulated in FL and SP, while the bivalent cation transporters were mostly downregulated in FL and NI, possibly helping to reduce Cd accumulation. The genes associated with essential nutrient transporters, carbohydrate and secondary metabolite biosynthesis, and cytochrome oxidase activity were mostly upregulated in Cd-exposed FL and SP, which may help to alleviate oxidative stress and improve plant growth under Cd exposure. Interestingly, genes responsible for signal transduction were negatively regulated in FL, but positively regulated in SP, by foliar Si. Our results provide transcriptomic evidence that foliar Si plays an active role in alleviating the effects of Cd exposure in rice. In particular, foliar Si may alter the expression pattern of genes associated with transport, biosynthesis and metabolism, and oxidation reduction.

Advances in Understanding Silicon Transporters and the Benefits to Silicon-Associated Disease Resistance in Plants

Silicon (Si) is the second most abundant element after oxygen in the earth’s crust and soil. It is available for plant growth and development, and it is considered as quasi-essential for plant growth. The uptake and transport of Si is mediated by Si transporters. With the study of the molecular mechanism of Si uptake and transport in higher plants, different proteins and coding genes with different characteristics have been identified in numerous plants. Therefore, the accumulation, uptake and transport mechanisms of Si in various plants appear to be quite different. Many studies have reported that Si is beneficial for plant survival when challenged by disease, and it can also enhance plant resistance to pathogens, even at low Si accumulation levels. In this review, we discuss the distribution of Si in plants, as well as Si uptake, transport and accumulation, with a focus on recent advances in the study of Si transporters in different plants and the beneficial roles of Si in disease resistance. Finally, the application prospects are reviewed, leading to an exploration of the benefits of Si uptake for plant resistance against pathogens.

Joule-Heated Layered Double Hydroxide Sponge for Rapid Removal of Silica from Water

Dissolved silica is a major concern for a variety of industrial processes owing to its tendency to form complex scales that severely deteriorate system performance. In this work, we present a pretreatment technology using a Joule-heated sponge to rapidly remove silica from saline waters through adsorption, thereby effectively mitigating silica scaling in subsequent membrane desalination processes. The adsorbent sponge is fabricated by functionalizing two-dimensional layered double hydroxide (LDH) nanosheets on a porous, conductive stainless-steel sponge. With the application of an external voltage of 4 V, the Joule-heated sponge achieves 85% silica removal and 95% sponge regeneration within 15 min, which is much more efficient than its counterpart without Joule-heating (360 min for silica adsorption and 90 min for sponge regeneration). Material characterization and reaction kinetics analysis reveal that electrostatic interactions and "memory effect"-induced intercalation are the primary mechanisms for silica removal by the LDH nanosheets. Moreover, Joule-heating reduces the boundary layer resistance on nanosheets and facilitates intraparticle diffusion of dissolved silica, thereby increasing silica removal kinetics. Joule-heating also enhances the release of silicate ions during the regeneration stage through exchange with the surrounding anions (OH^- or CO₃^2-), resulting in a more efficient sponge regeneration. Pretreatment of silica-rich feedwaters by the Joule-heated sponge effectively reduces reverse osmosis membrane scaling by amorphous silica scale, demonstrating great potential for silica scaling control in a broad range of engineered processes.

Structural Basis for Silicic Acid Uptake by Higher Plants

Many of the world's most important food crops such as rice, barley and maize accumulate silicon (Si) to high levels, resulting in better plant growth and crop yields. The first step in Si accumulation is the uptake of silicic acid by the roots, a process mediated by the structurally uncharacterised NIP subfamily of aquaporins, also named metalloid porins. Here, we present the X-ray crystal structure of the archetypal NIP family member from Oryza sativa (OsNIP2;1). The OsNIP2;1 channel is closed in the crystal structure by the cytoplasmic loop D, which is known to regulate channel opening in classical plant aquaporins. The structure further reveals a novel, five-residue extracellular selectivity filter with a large diameter. Unbiased molecular dynamics simulations show a rapid opening of the channel and visualise how silicic acid interacts with the selectivity filter prior to transmembrane diffusion. Our results will enable detailed structure-function studies of metalloid porins, including the basis of their substrate selectivity.

Silicon in the Soil-Plant Continuum: Intricate Feedback Mechanisms within Ecosystems

Plants' ability to take up silicon from the soil, accumulate it within their tissues and then reincorporate it into the soil through litter creates an intricate network of feedback mechanisms in ecosystems. Here, we provide a concise review of silicon's roles in soil chemistry and physics and in plant physiology and ecology, focusing on the processes that form these feedback mechanisms. Through this review and analysis, we demonstrate how this feedback network drives ecosystem processes and affects ecosystem functioning. Consequently, we show that Si uptake and accumulation by plants is involved in several ecosystem services like soil appropriation, biomass supply, and carbon sequestration. Considering the demand for food of an increasing global population and the challenges of climate change, a detailed understanding of the underlying processes of these ecosystem services is of prime importance. Silicon and its role in ecosystem functioning and services thus should be the main focus of future research.

Silicon Cycling in Soils Revisited

Silicon (Si) speciation and availability in soils is highly important for ecosystem functioning, because Si is a beneficial element for plant growth. Si chemistry is highly complex compared to other elements in soils, because Si reaction rates are relatively slow and dependent on Si species. Consequently, we review the occurrence of different Si species in soil solution and their changes by polymerization, depolymerization, and condensation in relation to important soil processes. We show that an argumentation based on thermodynamic endmembers of Si dependent processes, as currently done, is often difficult, because some reactions such as mineral crystallization require months to years (sometimes even centuries or millennia). Furthermore, we give an overview of Si reactions in soil solution and the predominance of certain solid compounds, which is a neglected but important parameter controlling the availability, reactivity, and function of Si in soils. We further discuss the drivers of soil Si cycling and how humans interfere with these processes. The soil Si cycle is of major importance for ecosystem functioning; therefore, a deeper understanding of drivers of Si cycling (e.g., predominant speciation), human disturbances and the implication for important soil properties (water storage, nutrient availability, and micro aggregate stability) is of fundamental relevance.

Fascinating impact of silicon and silicon transporters in plants: A review

Silicon (Si) is a metalloid which is gaining worldwide attention of plant scientists due to its ameliorating impact on plants' growth and development. The beneficial response of Si is observed predominantly under numerous abiotic and biotic stress conditions. However, under favorable conditions, most of the plant can grow without it. Therefore, Si has yet not been fully accepted as essential element rather it is being considered as quasi-essential for plants' growth. Si is also known to enhance resilience in plants by reducing the plant's stress. Besides its second most abundance on the earth crust, most of the soils lack plant available form of Si i.e. silicic acid. In this regard, understanding the role of Si in plant metabolism, its uptake from roots and transport to aerial tissues along with its ionomics and proteomics under different circumstances is of great concern. Plants have evolved a well-optimized Si-transport system including various transporter proteins like Low silicon1 (Lsi1), Low silicon2 (Lsi2), Low silicon3 (Lsi3) and Low silicon6 (Lsi6) at specific sub-cellular locations along with the expression profiling that creates precisely coordinated network among these transporters, which also facilitate uptake and accumulation of Si. Though, an ample amount of information is available pertinent to the solute specificity, active sites, transcriptional and post-transcriptional regulation of these transporter genes. Similarly, the information regarding transporters involved in Si accumulation in different organelles is also available particularly in silica cells occurred in poales. But in this review, we have attempted to compile studies related to plants vis à vis Si, its role in abiotic and biotic stress, its uptake in various parts of plants via different types of Si-transporters, expression pattern, localization and the solute specificity. Besides these, this review will also provide the compiled knowledge about the genetic variation among crop plants vis à vis enhanced Si uptake and related benefits.

Fractal structures and silica films formed by the Treignac water on inert and biological surfaces

The Treignac water is a natural mineral water containing mainly orthosilicic acid. On inert substrates, it forms a silica film with fractal structures which cannot be reproduced in laboratory-reconstituted water. These structures form by condensation of orthosilicic acid monomers, following the Witten-Sander model of diffusion-limited aggregation. On biological surfaces, such as tomato leaves, the Treignac water forms a silica film with a different morphology and devoid of fractal structures. The filmogenic properties of this natural mineral water are here discussed in the context of crop protection, as the silica film can provide a barrier and a platform for the immobilization of elicitors of plant defense responses.

Biodegradation model of porous silicon nanoparticles

Development of porous silicon-based drug delivery systems for theranostics requires a precise control of their biodegradation. Thus, we propose a model for the biodegradation of porous silicon nanoparticles (PSi NPs) based on a diffusion equation combined with Nernst-Brunner mass transfer equation describing the dissolution of silicon and formation of silicic acid (SA). The spatiotemporal distributions of PSi NP porosity and SA concentration were calculated. The model was successfully applied to fitting a great variety of experimental data on more than 10 factors influencing the PSi NP biodegradation kinetics, such as the morphology of PSi NPs, surface composition, properties of surrounding media and protective coating layer. Two principal regimes were found out for systems with either diffusion or dissolution dominating over each other. The results of simulations revealed the values of several important parameters, which are hard to be measured experimentally.

Poly(sodium-p-styrenesulfonate)-enhanced fluorescent silver nanoclusters for the assay of two food flavors and silicic acid

A water-soluble, long-term stable, poly(sodium-p-styrenesulfonate)-enhanced and d-penicillamine stabilized argentum nanoclusters (PSS-DPA-AgNCs) was synthesized by a one-step ultraviolet radiation combined with microwave heating method. The effects of different types of polyelectrolytes and energy suppliers on the AgNCs photo-luminescence performance were investigated in detail. The prepared AgNCs are exhibited to be viable fluorescent method for 2-Mercapto-3-butanol (2-M-3-B), 3-Mercapto-2-butanone (3-M-2-B) and silicate (SiO₃^2-) determinations. The fluorescence (FL) of PSS-DPA-AgNCs is quenched with the addition of 2-M-3-B/3-M-2-B/SiO₃^2- mainly originating from a static quenching process. The method can monitor 2-M-3-B/3-M-2-B by fluorometry with a linear response in the range of 0.33-90.0/0.33-80.0 μM and a 74/250 nM detection limit (at 3σ/slope). For the SiO₃^2- assay, corresponding data are 3.33-100.0 μM and 278 nM. Moreover, the proposed method was successfully used for the assays of two food flavors in the steamed bread and soda drinks, and silicate in the mineral water samples respectively.

Identification of the aquaporin gene family in Cannabis sativa and evidence for the accumulation of silicon in its tissues

Cannabis sativa is an economically important crop providing bast fibres for the textile and biocomposite sector. Length is a fundamental characteristic determining the properties of bast fibres. Aquaporins, channel-forming proteins facilitating the passage of water, urea, as well as elements such as boron and silicon, are known to play a role in the control of fibre length in other species, like cotton. By mining the available genome, we here identify, for the first time, the aquaporin gene family of C. sativa. The analysis of published RNA-Seq data and targeted qPCR on a textile variety reveal an organ-specific expression of aquaporin genes. Computational analyses, including homology-based search, phylogeny and protein modelling, identify two NOD26-like intrinsic proteins harbouring the Gly-Ser-Gly-Arg (GSGR) aromatic/Arg selectivity filter and 108 amino acid NPA (Asn-Pro-Ala) spacing, features reported to be associated with silicon permeability. SIMS nano-analysis and silica extraction coupled to fluorescence microscopy performed on hemp plantlets reveal the presence of silicon in the bast fibres of the hypocotyl and in leaves. The accumulation of silica in the distal cell walls of bast fibres and in the basal cells of leaf trichomes is indicative of a mechanical role.