Anaerobic digestion of agricultural manure and biomass - Critical indicators of risk and knowledge gaps

A comprehensive review on the production and enhancement techniques of gaseous biofuels and their applications in IC engines with special reference to the associated performance and emission characteristics

The increasing global demand for energy, coupled with environmental concerns associated with fossil fuels, has led to the exploration of alternative fuel sources. Gaseous biofuels, derived from organic matter, have gained attention due to their renewable nature and clean combustion characteristics. The paper extensively explores production pathways for gaseous biofuels, including biogas, syngas, and hydrogen, providing insightful discussions on various sources and processes. The energy content, physical, and chemical properties of gaseous biofuels have been analysed, highlighting their potential as viable alternatives to conventional fuels. Distinctive properties of biogas, producer gas, and hydrogen that impact combustion characteristics and engine efficiency in IC engines are underscored. Furthermore, the review systematically reviews enhancement techniques for gaseous biofuels, encompassing strategies to augment quality, purity, and combustion efficiency. Various methods, ranging from substrate pretreatment for biogas to membrane separation for hydrogen, illustrate effective means of enhancing fuel performance. Rigorous examination of performance parameters such as brake thermal efficiency, specific fuel consumption and emissions characteristics such as NOx, CO, CO2, HC of gaseous biofuels in dual-fuel mode emphasizes efficiency and environmental impact, offering valuable insights into their feasibility as engine fuels. The findings of this review will serve as a valuable resource for researchers, engineers, and policymakers involved in alternative fuels and sustainable transportation, while also highlighting the need for further research and development to fully unlock the potential of gaseous biofuels in IC engines.

Impact of cultivating different Ocimum species on bioaerosol bacterial communities and functional genome at an agricultural site

The effects of the surrounding environment on the bacterial composition of bioaerosol were well documented for polluted and contaminated sites. However, there is limited data on the impact of plant species, especially those that produce aromas, on bioaerosol composition at agricultural sites. Hence, the aim of this study is to evaluate the variability in bacterial communities present in bioaerosol samples collected from agricultural sites with aroma-producing crops. For this, PM2.5, PM10, and bioaerosol samples were collected from agricultural fields growing Ocimum [two varieties of O. sanctum (CIM-Aayu and CIM-Angana)] and O. kilimandscharicum (Kapoor), nearby traffic junctions and suburban areas. PM2.5 and PM10 concentrations at the agricultural site were in between the other two polluted sites. However, bioaerosol concentration was lower at agricultural sites than at other sites. The culturable bacteria Bacillus subtilis, Bacillus tequilensis, and Staphylococcus saprophyticus were more prevalent in agricultural sites than in other areas. However, the composition of non-culturable bacteria varied between sites and differed in three fields where Ocimum was cultivated. The CIM-Aayu cultivated area showed a high bacterial richness, lower Simpson and Shannon indices, and a distinctive metabolic profile. The sites CIM-Angana and CIM-Kapoor had a higher abundance of Aeromonas, while Pantoea and Pseudomonas were present at CIM-Aayu. Acinetobacter, Staphylococcus, and Bacillus were the dominant genera at the other two sites. Metabolic profiling showed that the CIM-Aayu site had a higher prevalence of pathways related to amino acid and carbohydrate metabolism and environmental information processing compared to other sites. The composition of bioaerosol among the three different Ocimum sites could be due to variations in the plant volatile and cross-feeding nature of bacterial isolates, which further needs to be explored.

Process design and economic analysis for the production of microalgae from anaerobic digestates in open raceway ponds

A model based framework was established for large scale assessment of microalgae production using anaerobically digested effluent considering varied climatic parameters such as solar irradiance and air temperature. The aim of this research was to identify the optimum monthly average culture depth operation to minimize the cost of producing microalgae grown on anaerobic digestion effluents rich in ammoniacal nitrogen with concentration of 248 mg L-1. First, a productivity model combined with a thermal model was developed to simulate microalgae productivity in open raceway ponds as a function of climatic variables. Second, by combining the comprehensive open pond model with other harvesting equipment, the final techno economic model was developed to produce a microalgae product with 20 wt% biomass content and treated water with <1 mg L-1 ammoniacal nitrogen. The optimization approach on culture depth for outdoor open raceway ponds managed to reduce the cost of microalgae production grown in anaerobic digested wastewater up to 16 %, being a suitable solution for the production of low cost microalgae (1.7 AUD kg-1 dry weight) at possible scale of 1300 t dry weight microalgae yr-1.

A review of mitigation technologies and management strategies for greenhouse gas and air pollutant emissions in livestock production

One of the key issues in manure management of livestock production is to reduce greenhouse gas (GHG) and air pollutant emissions, which lead to significant environmental footprint and human/animal health threats. This study provides a review of potentially efficacious technologies and management strategies that reduce GHG and air pollutant emissions during the three key stages of manure management in livestock production, i.e., animal housing, manure storage and treatment, and manure application. Several effective mitigation technologies and practices for each manure management stage are identified and analyzed in detail, including feeding formulation adjustment, frequent manure removal and air scrubber during animal housing stage; solid-liquid separation, manure covers for storage, acidification, anaerobic digestion and composting during manure storage and treatment stage; land application techniques at appropriate timing during manure application stage. The results indicated several promising approaches to reduce multiple gas emissions from the entire manure management. Removing manure 2-3 times per week or every day during animal housing stage is an effective and simple way to reduce GHG and air pollutant emissions. Acidification during manure storage and treatment stage can reduce ammonia and methane emissions by 33%-93% and 67%-87%, respectively and proper acid, such as lactic acid can also reduce nitrous oxide emission by about 90%. Shallow injection of manure for field application has the best performance in reducing ammonia emission by 62%-70% but increase nitrous oxide emission. The possible trade-off brings insight to the prioritization of targeted gas emissions for the researchers, stakeholders and policymakers, and also highlights the importance of assessing the mitigation technologies across the entire manure management chain. Implementing a combination of the management strategies needs comprehensive considerations about mitigation efficiency, technical feasibility, local regulations, climate condition, scalability and cost-effectiveness.

Hyper-thermophilic anaerobic pretreatment enhances the removal of transferable oxazolidinone and phenicol cross-resistance gene optrA in enterococci

The extensive use of florfenicol in poultry industry results in the emergence of optrA gene, which also confers resistance to clinically important antibiotic linezolid. This study investigated the occurrence, genetic environments, and removal of optrA in enterococci in mesophilic (37 °C) and thermophilic (55 °C) anaerobic digestion systems, and a hyper-thermophilic (70 °C) anaerobic pretreatment system for chicken waste. A total of 331 enterococci were isolated and analyzed for antibiotic resistance against linezolid and florfenicol. The optrA gene was frequently detected in enterococci from chicken waste (42.7%) and effluents from mesophilic (72%) and thermophilic (56.8%) reactors, but rarely detected in the hyper-thermophilic (5.8%) effluent. Whole-genome sequencing revealed that optrA-carrying Enterococcus faecalis sequence type (ST) 368 and ST631 were the dominant clones in chicken waste, and they remained dominant in mesophilic and thermophilic effluents, respectively. The plasmid-borne IS1216E-fexA-optrA-erm(A)-IS1216E was the core genetic element for optrA in ST368, whereas chromosomal Tn554-fexA-optrA was the key one in ST631. IS1216E might play a key role in horizontal transfer of optrA due to its presence in different clones. Hyper-thermophilic pretreatment removed enterococci with plasmid-borne IS1216E-fexA-optrA-erm(A)-IS1216E. A hyper-thermophilic pretreatment is recommended for chicken waste to mitigate dissemination of optrA from animal waste to the environment.

Developing a biogas centralised circular bioeconomy using agricultural residues - Challenges and opportunities

Anaerobic digestion (AD) can be used as a stand-alone process or integrated as part of a larger biorefining process to produce biofuels, biochemicals and fertiliser, and has the potential to play a central role in the emerging circular bioeconomy (CBE). Agricultural residues, such as animal slurry, straw, and grass silage, represent an important resource and have a huge potential to boost biogas and methane yields. Under the CBE concept, there is a need to assess the long-term impact and investigate the potential accumulation of specific unwanted substances. Thus, a comprehensive literature review to summarise the benefits and environmental impacts of using agricultural residues for AD is needed. This review analyses the benefits and potential adverse effects related to developing biogas-centred CBE. The identified potential risks/challenges for developing biogas CBE include GHG emission, nutrient management, pollutants, etc. In general, the environmental risks are highly dependent on the input feedstocks and resulting digestate. Integrated treatment processes should be developed as these could both minimise risks and improve the economic perspective.

Changes in bacterial diversity, co-occurrence pattern, and potential pathogens following digestate fertilization: Extending pathogen management to field for anaerobic digestion of livestock manure

Digestate can spread pathogens into agroecosystem, posing serious threats to public health. However, the effect of digestate fertilization on digestate- or soil-borne pathogens has not been fully explored. Herein, two settings of microcosm experiment were performed with arable soil and digestate collected at two sites (Beilangzhong or Shunyi) to dissect the succession of the total and potential pathogenic bacterial communities following digestate fertilization. Each experimental setting consisted of three treatments, including digestate aerobically incubated in sterilized soil, and soil amended with sterilized or non-sterilized digestate. Digestate-borne potential pathogenic bacteria were enriched after the aerobic incubation, with Streptococcus sobrinus in the Beilangzhong setting, and Escherichia coli and Enterococcus faecium in the Shunyi setting. Potential soil-borne pathogenic bacteria, such as Acinetobacter lowffii and Pseudomonas fluorescens, were stimulated by the sterilized digestate in the Shunyi setting. Interestingly, S. sobrinus, E. coli, and Ent. faecium did not increase when digestate was amended into the non-sterilized soil, suggesting that soil microorganisms can inhibit the resurgence of these digestate-borne pathogens. A large-scale survey further revealed that organic fertilization exerted a site-dependent effect on different species of potential pathogen, but it did not enrich the total relative abundance of potential pathogenic bacteria in soils. Collectively, these results highlight that pathogen management of anaerobic digestion of livestock manure needs to be extended from anaerobic reactor to field.

Microplastics existence intensified bloom of antibiotic resistance in livestock feces transformed by black soldier fly

Efficient degradation of residual antibiotics in livestock and poultry feces by black soldier flies (BSFs) has been widely reported. Nevertheless, the effects of widely detected microplastics in feces on the dynamic reduction of antibiotics and the transfer of gut bacterial resistome remain unclear. In this study, red fluorescence-labeled microplastics are observed to be abundantly distributed in BSFs gut, which caused epithelial cell damage along with gut peristalsis and friction, thereby releasing reactive oxygen species and activating the antioxidant enzyme system. In addition, they result in not only in inflammatory cytokine release to induce gut inflammation, but fecal hardening because of mucus released from the BSFs, thereby hindering organic mineralization and antibiotic degradation. Besides, the gut pathogenic bacteria easily obtain growth energy and crowded out ecological niches by reducing nitrate produced by inflammatory host cells to nitrite with nitrate reductase. Consequently, linear discriminant analysis effect size and detrended correspondence analysis found that microplastic intake significantly reshape the microbial community structure and cause the significant reduction of several important organic-decomposing bacteria and probiotics (e.g., Pseudomonadales, Coriobacteriales, Lachnospirales, and Ruminococcaceae). In addition, a large number of pathogenic bacteria (e.g., Enterococcaceae, Hungateiclostridiaceae, and Clostridia) are enriched in feces and BSFs gut. Weighted correlation network analysis and bubble diagram analysis indicate that microplastic intake intensified gut colonization of pathogenic bacteria carrying antibiotic-resistant genes/mobile genetic elements, driving the bloom of antibiotic resistance in transformed fecal piles. Therefore, microplastics in feces should be isolated as much as possible before insect transformation.

Human health risk assessment of bisphenol A (BPA) through meat products

Meat and meat products are often consumed in our daily diet, providing essential nutrients. Contamination by chemical hazards, including bisphenol A (BPA) in meat products, is a concern and is continuously monitored. BPA is well-known for its endocrine-disrupting properties, which may cause potential toxicological effects on reproductive, nervous, and immune systems. Dietary consumption is the main route of BPA exposure, and meat products are a major contributor. BPA exposure from meat consumption is the focus of this review. This review found that BPA has been widely detected in canned and non-canned meat products. BPA in canned meat is assumed to be predominantly from migration from can coatings. Relatively low levels are observed in non-canned products, and the source of contamination in these products has yet to be definitively identified. A recent European Food Safety Authority (EFSA) draft opinion has proposed to lower the tolerable daily intake of BPA from 4 μg kg body weight (bw)^-1 day^-1 to 0.04 ng kg body weight (bw)^-1 day^-1, therefore potential health risks need to be addressed. This review has investigated potential contamination at the farm, industrial processes, and retail levels. Data gaps in the literature are also identified to improve future food safety in the meat industry. Also, a unified risk assessment strategy has been proposed. Further understanding of BPA migration in meat products is needed as a part of the exposure assessment to reduce potential risk, and more data on the dose-response relationship will help comprehend potential adverse health effects of BPA on humans. This research will inform the public, meat producers and processing industry, and policymakers on potential exposure to BPA and risk reduction measures, thus, ensuring food safety.

Occurrence and transfer characteristics of blaCTX-M genes among Escherichia coli in anaerobic digestion systems treating swine waste

Livestock waste is a known reservoir of Escherichia coli (E. coli) carrying clinically important CTX-M-type extended-spectrum β-lactamase genes (bla_CTX-M), however, the occurrence and transfer characteristics of bla_CTX-M genes during anaerobic digestion (AD) remain unclear. Herein, four full-scale and two parallel lab-scale AD systems treating swine waste under ambient and mesophilic conditions were investigated by both molecular- and culture-based methods to reveal the occurrence and transfer behaviors of bla_CTX-M genes during AD. Real-time TaqMan polymerase chain reaction revealed 1.3 × 10⁴-6.8 × 10⁵ and 3.0 × 10⁴-7.0 × 10⁵ copies/mL of bla_CTX-M groups 1 and 9 in all feeding substrates. While AD reduced the absolute abundance of groups 1 and 9 by 0.63-2.24 and 0.08-1.30 log (P < 0.05), 5.0 × 10²-4.1 × 10³ and 1.1 × 10⁴-3.5 × 10⁴ copies/mL of groups 1 and 9 remained in the anaerobic effluent, respectively. In total, 141 bla_CTX-M-carrying E. coli isolates resistant to cefotaxime were obtained from the AD reactors. Whole-genome sequencing showed that bla_CTX-M-65 mainly carried by E. coli ST155 was the most frequently detected group 9 subtype in the feeding substrate; whereas bla_CTX-M-14 associated with the dominant clones E. coli ST6802 and ST155 became the major subtype in AD effluent. Furthermore, bla_CTX-M-14 was flanked by ΔIS26 upstream and ΔIS903B downstream. The ΔIS26-bla_CTX-M-14-ΔIS903B element was mainly located on the IncHI2 plasmid in E. coli ST48 and ST6802 and also the IncFIB plasmid in ST155 in anaerobic effluent. Conjugation assays showed that the plasmids harboring bla_CTX-M-14 could be successfully transferred at a frequency of 10^-3-10^-2 cells per recipient cell. This study revealed that bla_CTX-M genes remained in both the full-scale and lab-scale AD effluents of swine waste. Thus, additional efforts should be implemented to block the discharge and spread of antibiotic resistance genes to the environment.

Application of autothermal thermophilic aerobic digestion as a sustainable recycling process of organic liquid waste: Recent advances and prospects

Autothermal thermophilic aerobic digestion (ATAD) has been used to stabilize organic waste since the 1960s and is considered sustainable technology. ATAD has several advantages, including high biodegradation efficiency, pathogen inactivation, and ease of operation. Although ATAD research has a long history, the number of studies on ATAD is much lower than those on similar aerobic processes, particularly composting. Previous review articles addressed the origin, design, operational experiences, metabolism, and the microorganisms at the thermophilic stage of ATAD. This article reviews the digestion systems, applications, and characteristics of ATAD; compares system performance and microbial community structure of ATAD with those of other biological processes such as composting, activated sludge, and anaerobic digestion; and discusses the physicochemical properties and factors of ATAD. The challenges, opportunities, and prospects for the application of ATAD are also discussed. This review suggests that ATAD is feasible for treating organic liquid waste (1-6% total solid content) in small-sized towns and can help establish a sustainable society.

Nanoparticle Food Applications and Their Toxicity: Current Trends and Needs in Risk Assessment Strategies

ABSTRACT

Nanotechnology has developed into one of the most groundbreaking scientific fields in the last few decades because it exploits the enhanced reactivity of materials at the atomic scale. The current classification of nanoparticles (NPs) used in foods is outlined in relation to the production and physicochemical characteristics. This review aims to concisely present the most popular and widely used inorganic and organic NPs in food industries. Considering that the toxicity of NPs is often associated with chemical reactivity, a series of in vitro toxicity studies are also summarized, integrating information on the type of NP studies and reported specifications, type of cells used, exposure conditions, and assessed end points. The important role of the digestive system in the absorption and distribution of nanoformulated foods within the body and how this affects the resultant cytotoxicity. Examples of how NPs and their accumulation within different organs are presented in relation to the consumption of specific foods. Finally, the role of developing human health risk assessments to characterize both the potential impact of the hazard and the likelihood or level of human exposure is outlined. Uncertainties exist around risk and exposure assessments of NPs due to limited information on several aspects, including toxicity, behavior, and bioaccumulation. Overall, this review presents current trends and needs for future assessments in toxicity evaluation to ensure the safe application of NPs in the food industry.

HIGHLIGHTS

Quantitative microbial risk assessment associated with ready-to-eat salads following the application of farmyard manure and slurry or anaerobic digestate to arable lands

Farmyard manure and slurry (FYM&S) and anaerobic digestate are potentially valuable soil conditioners providing important nutrients for plant development and growth. However, these organic fertilisers may pose a microbial health risk to humans. A quantitative microbial risk assessment (QMRA) model was developed to investigate the potential human exposure to pathogens following the application of FYM&S and digestate to agricultural land. The farm-to-fork probabilistic model investigated the fate of microbial indicators (total coliforms and enterococci) and foodborne pathogens in the soil with potential contamination of ready-to-eat salads (RTEs) at the point of human consumption. The processes examined included pathogen inactivation during mesophilic anaerobic digestion (M-AD), post-AD pasteurisation, storage, dilution while spreading, decay in soil, post-harvest washing processes, and finally, the potential growth of the pathogen during refrigeration/storage at the retail level in the Irish context. The QMRA highlighted a very low annual probability of risk (P_annual) due to Clostridium perfringens, norovirus, and Salmonella Newport across all scenarios. Mycobacterium avium may result in a very high mean P_annual for the application of raw FYM&S, while Cryptosporidium parvum and pathogenic E. coli showed high P_annual, and Listeria monocytogenes displayed moderate P_annual for raw FYM&S application. The use of AD reduces this risk; however, pasteurisation reduces the P_annual to an even greater extent posing a very low risk. An overall sensitivity analysis revealed that mesophilic-AD's inactivation effect is the most sensitive parameter of the QMRA, followed by storage and the decay on the field (all negatively correlated to risk estimate). The information generated from this model can help to inform guidelines for policymakers on the maximum permissible indicator or pathogen contamination levels in the digestate. The QMRA can also provide the AD industry with a safety assessment of pathogenic organisms resulting from the digestion of FYM&S.

Olive Mill Waste-Based Anaerobic Digestion as a Source of Local Renewable Energy and Nutrients

This study focused on what combination of anaerobic digestion (AD) temperature (ambient, mesophilic, and thermophilic) and olive mill waste (OMW) to dairy manure (DM) ratio mixture delivers the desired renewable energy and digestate qualities when using AD as olive mill waste treatment. OMW is widespread in the local environment in the North Sinai region, Egypt, which causes many environmental hazards if left without proper treatment. Three different mixtures consisting of OMW, dairy manure (DM), and inoculum (IN) were incubated under ambient, mesophilic, and thermophilic conditions for 45 days. The results showed that mixture B (2:1:2, OMW:DM:IN) at 55 °C produced more methane than at 35 °C and ambient temperature by 40% and 252%, respectively. Another aim of this study was to investigate the effects of the different concentrations of the digestate taken from each mixture on faba bean growth. The results showed that the maximum fresh weight values of the shoot system were observed at 10% and 15% for mixture B at ambient temperature. The best concentration value for the highest root elongation rate is a 5% addition of digestate mixture A at 55 °C, compared with other treatments.

Risk factors and assessment strategies for the evaluation of human or environmental risk from metal(loid)s - A focus on Ireland

Elevated human exposure to metals and metalloids (metal(loid)s) may lead to acute sickness and pose a severe threat to human health. The human body is exposed to metal(loid)s principally through food, water, supplements, and (occasionally) air. There are inherent background levels of many metal(loid)s in regional soils as a consequence of geological sources. Baseline levels coupled with anthropogenic sources such as regional application of biosolids may lead to increased levels of certain metal(loid)s in soil, leading to potential transfer to water sources and potential uptake by plants. The latter could potentially transfer into the feed-to-food chain, viz. grazing animals, and bio-transfer to food products resulting in human exposure. This study addresses health concerns due to excessive intake of metal(loid)s by conducting a traditional review of peer-reviewed journals between 2015 and 2019, secondary references and relevant websites. The review identified the most researched metal(loid)s as Cu, Zn, Pb, Cd, Ni, Cr, As, Hg, Mn, Fe in the environment. The potential uptake of metal(loid)s by plants (phytoavailability) is a function of the mobility/retainability of metal(loid)s in the soil, influenced by soil geochemistry. The most critical parameters (including soil pH, soil organic matter, clay content, cation exchange capacity, the capability of decomposition of organic matter by microbes, redox potential, ionic strength) influencing metal(loid)s in soil are reviewed and used as a foundation to build a framework model for ranking metal(loid)s of concern. A robust quantitative risk assessment model is recommended for evaluating risk from individual metal(loid)s based on health-based indices (Daily Dietary Index (DDI), No Observed Adverse Effect Level (NOAEL), and Lowest Observed Adverse Effect Level (LOAEL)). This research proposes a risk assessment framework for potentially harmful metal(loid)s in the environment and highlights where regulation and intervention may be required.

A GIS study to rank Irish agricultural lands with background and anthropogenic concentrations of metal(loid)s in soil

Heavy metal pollution may cause a serious threat to human health and is a global problem. The bio-availability of metals and metalloids (metal (loid)s) in the soil is a dominating parameter for metal (loid) uptake by plants, and which may subsequently be ingested by individuals through the food pathway. This study aimed to develop a novel approach based on a semi-quantitative probability-impact (P-I) matrix with the help of a GIS mapping tool. ArcGIS was used for data analysis, classification, and reclassification of parameters of the model. Nine influencing parameters were selected for a semi-quantitative risk ranking. These are soil pH, soil organic carbon (SOC), soil texture class, slope, field/soil drainage class, Integrated Risk Quotient (IRQ), proximity to mines, urban activity, and potential biosolids application areas. The results revealed that certain areas (including Co. Louth, Co. Wicklow, Co. Wexford) along the East coast of Ireland pose a higher relative risk. Therefore, in-depth quantitative human health risk assessment is proposed considering the potential bioaccumulation of metal (loid)s if the crops are grown on land with elevated levels of metal (loid)s. Furthermore, this work reveals the usefulness of the GIS mapping techniques in risk assessment to rank areas of elevated levels of potential pollutants.

Evaluation of pathogen concentration in anaerobic digestate using a predictive modelling approach (ADRISK)

Farmyard manure and slurry (FYM&S) is a valuable feedstock for anaerobic digestion (AD) plants. However, FYM&S may contain high concentrations of pathogens, and complete inactivation through the AD process is unlikely. Thus, following land application of digestate, pathogens may contaminate a range of environmental media posing a potential threat to public health. The present study aimed to combine primary laboratory data with literature-based secondary data to develop an Excel-based exposure assessment model (ADRISK) using a gamma generalised linear model to predict the final microorganism count in the digestate. This research examines the behaviour of a suite of pathogens (Cryptosporidium parvum, norovirus, Mycobacterium spp., Salmonella spp., Listeria monocytogenes, Clostridium spp., and pathogenic Escherichia coli) and indicators (total coliforms, E. coli, and enterococci) during mesophilic anaerobic digestion (M-AD) at 37 °C, pre/post-AD pasteurisation, and after a period of storage (with/without lime) for different feedstock proportions (slurry:food waste: 0:1, 1:3, 2:1, and 3:1). ADRISK tool simulations of faecal indicator bacteria levels across all scenarios show that the digestate can meet the EU standard without pasteurisation if the AD runs at 37 °C or a higher temperature with a higher C:N ratio (recipe 3) and a hydraulic retention time ≥ 7 days. The storage of digestate also reduced levels of microorganisms in the digestate. The Irish pasteurisation process (60 °C for 4 days), although more energy-intensive, is more effective than the EU pasteurisation (70 °C for 1 h) specification. Pre-AD pasteurisation was more effective for C. parvum, norovirus, Mycobacterium thermoresistibile. However, post-AD literature-based pasteurisation is most likely to assure the safety of the digestate. The information generated from this model can inform policy-makers regarding the optimal M-AD process parameters necessary to maximise the inactivation of microorganisms, ensuring adverse environmental impact is minimised, and public health is protected.

Quantitative microbial human exposure model for faecal indicator bacteria and risk assessment of pathogenic Escherichia coli in surface runoff following application of dairy cattle slurry and co-digestate to grassland

Animal waste contains high numbers of microorganisms and therefore can present a potential biological threat to human health. During episodic rainfall events resulting in runoff, microorganisms in the waste and soil may migrate into surface runoff, contaminating surface water resources. A probabilistic human exposure (HE) model was created to determine exposure to faecal indicator bacteria (FIB): total coliforms (TC), E. coli and enterococci following application of bio-based fertiliser (dairy cattle slurry, digestate) to grassland; using a combination of experimental field results and literature-based data. This step was followed by a quantitative microbial risk assessment (QMRA) model for pathogenic E. coli based on a literature-based dose-response model. The results showed that the maximum daily HE (HE_daily) is associated with E. coli for unprocessed slurry (treatment T1) on day 1, the worst-case scenario where the simulated mean HE_daily was calculated as 2.84 CFU day ^-1. The results indicate that the overall annual probability of risk (P_annual) of illness from E. coli is very low or low based on the WHO safe-limit of P_annual as 10 ^-6. In the worst-case scenario, a moderate risk was estimated with simulated mean P_annual as 1.0 × 10 ^-5. Unpasteurised digestate application showed low risk on day 1 and 2 (1.651 × 10 ^-6, 1.167 × 10 ^-6, respectively). Pasteurised digestate showed very low risk in all scenarios. These results support the restriction imposed on applying bio-based fertiliser if there is any rain forecast within 48 h from the application time. This study proposes a future extension of the probabilistic model to include time, intensity, discharge, and distance-dependant dilution factor. The information generated from this model can help policymakers ensure the safety of surface water sources through the quality monitoring of FIB levels in bio-based fertiliser.

Effect of temperature on the persistence of fecal bacteria in ambient anaerobic digestion systems treating swine manure

This study aimed to explore the effect of temperature on the persistence of fecal bacteria by multiple approaches in ambient anaerobic digestion systems treating swine manure. Both lab-scale (15 °C, 20 °C, and 25 °C) and field (26 °C on average) studies were conducted by high-throughput sequencing and culture-based methods. A community-wide Bayesian SourceTracker method was used to identify and estimate the fecal bacterial proportion in anaerobic effluent. High proportional contributions of fecal bacteria were observed in effluent at 15 °C (73%) and 20 °C (75%), while less was found at 25 °C (19%). This was further verified by a field study (23%) and an anaerobic reactor study at 37 °C (0.01%). To explore the potential reasons for differences in fecal bacterial proportions, bacterial taxa were divided into "lost" and "survivor" taxa in manure waste by LEfSe. The "survivor" taxa abundance was positively correlated with SourceTracker proportion (r = 0.913, P = 0.001), but negatively correlated with temperature (r = -0.826, P = 0.006). In addition, biomarkers in effluent were divided into "enriched" and "de novo" taxa. "Enriched" taxa, including acidogenic and acetogenic bacteria, were found at all temperatures, whereas taxa related to organic degradation were multiplied "de novo" at 25 °C. Variation partition analysis showed that temperature could explain 30% of variations in effluent bacterial community. Moreover, coliforms isolated from the manure and effluents at 15 °C and 20 °C were also phylogenetically related. This study provided comprehensive insight into the impact of temperature on the persistence of fecal bacteria in anaerobic effluent, with temperatures over 25 °C recommended to reduce fecal pollution.

Risk assessment of Escherichia coli in bioaerosols generated following land application of farmyard slurry

Transfer of Escherichia coli in bioaerosols to humans during and shortly after the land application of farmyard slurry may pose human health hazards, but it has not been extensively explored to date. The present study developed a quantitative risk assessment model for E. coli through the air exposure route. The probabilistic model assessed the predicted number of microorganisms in the air (PN_air) to which humans may be exposed. A Gaussian air dispersion model was used to calculate the concentration of E. coli transmitted through aerosols. Human exposure (HE) to E. coli was estimated using a Monte Carlo simulation approach. This research predicted the mean HE as 26 CFU day^-1 (95th percentile 263 CFU day^-1) and suggests the importance of keeping a distance of at least 100 m for the residential population from land spreading activities. However, the simulated mean daily or annual (once a year application) risk of 2.65 × 10^-7 person^-1 year^-1 due to land application of slurry indicates very low occupational risk for farmworkers not equipped with the personal protective equipment (PPE), who are potentially exposed to E. coli indirectly. The model found that the decay constant of E. coli in air, duration of decay, and bio-aerosolisation efficiency factor (top three) could influence HE to airborne E. coli. Furthermore, this research recommends an average time lag of at least 2.5 h following the application of farmyard slurry to the field before humans access the field again without PPE, allowing the airborne pathogen to decay, thereby ensuring occupational safety. The model suggested that the bio-aerosolisation efficiency factor (E) for other pathogens requires further investigation. The information generated from this model can help to assess likely exposure from bioaerosols triggered by land application of farmyard slurry.

Influence of operating conditions on the persistence of E. coli, enterococci, Clostridium perfringens and Clostridioides difficile in semi-continuous mesophilic anaerobic reactors

This study examined the combined effect of hydraulic retention time (HRT), organic loading rate (OLR) and heat pretreatment of manure (70 °C, 1 h) on the fate of E. coli, enterococci, C. perfringens, C. difficile, and on chemical parameters (volatile fatty acids and ammonia) that may inactivate pathogens. Semi-continuous mesophilic anaerobic reactors were fed with pig manure and horse feed. The operating conditions were 2, 3, 4 COD.L^-1.d^-1 (OLR), 24, 35, 46 days (HRT) and use or not of a thermal pretreatment. The levels of the chemical parameters did not reach concentrations capable of inactivating the four bacteria. Anaerobic digestion led to a Log₁₀ removal > 3 (E. coli), 0.9-2.1 (enterococci), 0.1-0.6 (C. perfringens) and 0-1 (C. difficile). Increasing HRT only reduced the concentration of E. coli in the digestate. Increasing OLR reduced the Log₁₀ removal of enterococci and C. difficile. The heat pretreatment led to non-detection of E. coli in the digestate, reduced the concentration of C. perfringens by 0.8-1.3 Log₁₀ and increased the concentration of C. difficile by 0.04-0.7 Log₁₀. Enterococci, not detected in the heated manure, were present in the digestate. The distribution of genes encoding virulence factors of C. difficile (tcdA and tcdB) and C. perfringens (cpa, cpb2 and cpb) was not impacted by anaerobic digestion or by the heat pretreatment. Enterococci, C. perfringens, C. difficile were present in the digestate at relatively stable concentrations regardless of the operating conditions, indicating that even with heat pretreatment, the biosafety of digestate cannot be guaranteed in mesophilic conditions.

A Bayesian inference approach to quantify average pathogen loads in farmyard manure and slurry using open-source Irish datasets

Farm-to-fork quantitative microbial risk assessments (QMRA) typically start with a preliminary estimate of initial concentration (C_initial) of microorganism loading at farm level, consisting of an initial estimate of prevalence (P) and the resulting pathogen levels in animal faeces. An average estimation of the initial concentration of pathogens can be achieved by combining P estimates in animal populations and the levels of pathogens in colonised animals' faeces and resulting cumulative levels in herd farmyard manure and slurry (FYM&S). In the present study, 14 years of data were collated and assessed using a Bayesian inference loop to assess the likely P of pathogens. In this regard, historical and current survey data exists on P estimates for a number of pathogens, including Cryptosporidium parvum, Mycobacterium avium subspecies paratuberculosis (MAP), Salmonella spp., Clostridium spp., Campylobacter spp., pathogenic E. coli, and Listeria monocytogenes in several species (cattle, pigs, and sheep) in Ireland. The results revealed that Cryptosporidium spp. has potentially the highest mean P (P_mean) (25.93%), followed by MAP (15.68%) and Campylobacter spp. (8.80%) for cattle. The P_mean of E. coli is highest (7.42%) in pigs, while the P_mean of Clostridium spp. in sheep was estimated to be 7.94%. C_initial for Cryptosporidium spp., MAP., Salmonella spp., Clostridium spp., and Campylobacter spp. in cattle faeces were derived with an average of 2.69, 4.38, 4.24, 3.46, and 3.84 log₁₀ MPN g ^-1, respectively. Average C_initial of Cryptosporidium spp., Salmonella spp., Clostridium spp., and E. coli in pig slurry was estimated as 1.27, 3.12, 3.02, and 4.48 log₁₀ MPN g ^-1, respectively. It was only possible to calculate the average C_initial of Listeria monocytogenes in sheep manure as 1.86 log₁₀ MPN g ^-1. This study creates a basis for future farm-to-fork risk assessment models to base initial pathogen loading values for animal faeces and enhance risk assessment efforts.

On-Farm Anaerobic Digestion of Dairy Manure Reduces the Abundance of Antibiotic Resistance-Associated Gene Targets and the Potential for Plasmid Transfer

The present study investigated the impact of on-farm anaerobic digestion on the abundance of enteric bacteria, antibiotic resistance-associated gene targets, and the horizontal transfer potential of extended-spectrum β-lactamase (ESBL) genes. Samples of raw and digested manure were obtained from six commercial dairy farms in Ontario, Canada. Digestion significantly abated populations of viable coliforms in all six farms. Conjugative transfer of plasmids carrying β-lactamase genes from manure bacteria enriched overnight with buffered peptone containing 4 mg/liter cefotaxime into a β-lactam-sensitive green fluorescent protein (GFP)-labeled Escherichia coli recipient strain was evaluated in patch matings. Digestion significantly decreased the frequency of the horizontal transfer of ESBL genes. Twenty-five transconjugants were sequenced, revealing six distinct plasmids, ranging in size from 40 to 180 kb. A variety of ESBL genes were identified: bla_CTX-M-1, bla_CTX-M-14, bla_CTX-M-15, bla_CTX-M-27, bla_CTX-M-55, and bla_PER-1. bla_CTX-M-15 was the most prevalent ESBL gene detected on plasmids harbored by transconjugants. Various mobile genetic elements were found located proximal to resistance genes. Ten gene targets, including sul1, str(A), str(B), erm(B), erm(F), intI1, aadA, incW, bla_PSE, and bla_OXA-20, were quantified by quantitative PCR on a subset of 18 raw and 18 digested samples. Most targets were significantly more abundant in raw manure; however, erm(B) and erm(F) targets were more abundant in digested samples. Overall, on-farm digestion of dairy manure abated coliform bacteria, a number of antibiotic resistance-associated gene targets, and the potential for in vitro conjugation of plasmids conferring resistance to extended-spectrum β-lactams and other classes of antibiotics into E. coli CV601. IMPORTANCE Using livestock manure for fertilization can entrain antibiotic-resistant bacteria into soil. Manure on some dairy farms is anaerobically digested before being land applied. Recommending the widespread implementation of the practice should be founded on understanding the impact of this treatment on various endpoints of human health concern. Although lab-scale anaerobic treatments have shown potential for reducing the abundance of antibiotic resistance genes, there are very few data from commercial farms. Anaerobic digestion of manure on six dairy farms efficiently abated coliform bacteria, E. coli, and a majority of antibiotic resistance-associated gene targets. In addition, the conjugation potential of plasmids carrying ESBL genes into introduced E. coli strain CV601 was reduced. Overall, anaerobic digestion abated coliform bacteria, the genes that they carry, and the potential for ESBL-carrying plasmid transfer.

Effect of Digestate and Straw Combined Application on Maintaining Rice Production and Paddy Environment

Few studies have focused on the combined application of digestate and straw and its feasibility in rice production. Therefore, we conducted a two-year field experiment, including six treatments: without nutrients and straw (Control), digestate (D), digestate + fertilizer (DF), digestate + straw (DS), digestate + fertilizer + straw (DFS) and conventional fertilizer + straw (CS), to clarify the responses of rice growth and paddy soil nutrients to different straw and fertilizer combinations. Our results showed that digestate and straw combined application (i.e., treatment DFS) increased rice yield by 2.71 t ha⁻¹ compared with the Control, and digestate combined with straw addition could distribute more nitrogen (N) to rice grains. Our results also showed that the straw decomposition rate at 0 cm depth under DS was 5% to 102% higher than that under CS. Activities of catalase, urease, sucrase and phosphatase at maturity under DS were all higher than that under both Control and CS. In addition, soil organic matter (SOM) and total nitrogen (TN) under DS and DFS were 20~26% and 11~12% higher than that under B and DF respectively, suggesting straw addition could benefit paddy soil quality. Moreover, coupling straw and digestate would contribute to decrease the N content in soil surface water. Overall, our results demonstrated that digestate and straw combined application could maintain rice production and have potential positive paddy environmental effects.

Biogas production, waste stabilization efficiency, and hygienization potential of a mesophilic anaerobic plug flow reactor processing swine manure and corn stover

Swine manure and corn stover are abundant agricultural wastes which contribute to greenhouse gas (GHG) emissions, nutrient runoff leading to eutrophication, and a biosafety risk with respect to improper swine manure handling. Anaerobic co-digestion (AcoD) of swine manure and corn stover can mitigate these negative impacts while producing biogas as a renewable energy source. Semi-continuous mesophilic plug flow reactor (PFR operation) was studied during a step-wise increase in organic loading rate (OLR) over the range of 0.25-4.7 kg volatile solids added (VS) m^-3 d^-1, which corresponded to total solids content (TS) of 1.5-9.0%. Process stability was observed at all OLR, with the highest total biogas yield and methane content of 0.674 ± 0.06 m^-3 kg^-1 and 62%, respectively, at 0.25 kg m^-3 d^-1. As OLR and TS increased, VS reduction decreased and volatile fatty acids (VFA) increased due to shorter hydraulic retention times (HRT). Hygienization potential was assayed using fecal indicator bacteria (FIB), with some groups being reduced (E. coli, fecal coliforms) and others not (Clostridia spp., fecal enterococci). Lignocellulolytic enzyme activity trended upward as OLR was increased, highlighting changes in microbial activity in response to feeding rate.

Maximising resource recovery from wastewater grown microalgae and primary sludge in an anaerobic membrane co-digestion pilot plant coupled to a composting process

A pilot-scale microalgae (Chlorella spp.) and primary sludge anaerobic co-digestion (ACoD) plant was run for one year in an anaerobic membrane bioreactor (AnMBR) at 35 °C, 70 d solids retention time and 30 d hydraulic retention time, showing high stability in terms of pH and VFA concentration. The plant achieved a high degree of microalgae and primary sludge substrate degradation, resulting in a methane yield of 370 mLCH₄·gVS_inf^-1. Nutrient-rich effluent streams (685 mgN·L^-1 and 145 mgP·L^-1 in digestate and 395 mgNH₄-N·L^-1 and 37 mgPO₄-P·L^-1 in permeate) were obtained, allowing posterior nutrient recovery. Ammonium was recovered from the permeate as ammonia sulphate through a hydrophobic polypropylene hollow fibre membrane contactor, achieving 99% nitrogen recovery efficiency. However, phosphorus recovery through processes such as struvite precipitation was not applied since only 26% of the phosphate was available in the effluent. Composting process of the digestate coming from the ACoD pilot plant was assessed on laboratory-scale Dewar reactors, as was the conventional sludge compost from an industrial WWTP digestion process, obtaining similar values from both. Sanitised (free of Escherichia coli and Salmonella spp.) and stable compost (respirometric index at 37 °C below 0.5 mgO ₂ g organic matter^-1·h^-1) was obtained from both sludges.

Use of biochar/persulfate for accelerating the stabilization process and improving nitrogen stability of animal waste digestate

In China, the growing amount of digestate from anaerobic digestion produced by animal husbandry is an emerging challenge. A common treatment used to eliminate this digestate is long-term stabilization ponds. However, this process can lead to a shortage of digestate storage space and loss of nitrogen nutrients within the digestate. To alleviate those shortcomings, this study developed an efficient stabilization pond using biochar and persulfate (BC/PS treatment). Using this treatment, the germination index (GI) of the digestate increased from 56% to 85% and the stabilization efficiency increased nearly 2.7 times. In addition, the dehydrogenase activity (DHA) in the BC/PS treatment remained between 0.47 and 0.91 μg/(g·h) across the 40 days, which indicated that BC/PS had a positive effect on microbial inactivation. In the traditional stabilization process (CK treatment), dissolved organic nitrogen (DON) decreased from 47.77 mg/L to 0.81 mg/L and ammonium nitrogen almost disappeared. The BC/PS treatment led to the promotion of nitrogen nutrient composition. Particulate total nitrogen (21.49% of total nitrogen) decomposed into dissolved total nitrogen and the DON increased from 47.77 to 58.89 mg/L. The BC/PS treatment showed a faster stabilization time, good microbial inactivation, lower toxicity, and stable nitrogen nutrient composition of the digestate compared to traditional methods.

Horticulture and Orchards as New Markets for Manure Valorisation with Less Environmental Impacts

Animal manure management is a real challenge to minimize environmental impacts and ensure that this valuable material is efficiently used in a circular economy context. One of the main limitations for larger use of animal manure as fertilizer is the availability of land to receive it in an area close to the farm. Indeed, animal manure is traditionally used for cereals and animal feed growth, but the soil area occupied with these crops might not be enough to receive all the manure produced and/or part of this soil might have nutrient contents, namely phosphorous, that do not permit further application of manure. Hence, extra land used for other agricultural activities might be an option. The main objective of the present review was to analyse the constraints and solutions to increase the use of manure in horticulture and orchards. Emphasis was given to the legal framework for manure utilization in the EU that might stimulate or restrain such a solution. The main characteristics of manure that might limit or stimulate manure reuse were also described, and the potential of some treatments to valorise manure was analysed. Several examples of alternative uses of manure in horticulture and orchards were examined, and the society and farmers’ acceptance of the proposed solution was addressed.

Quantitative microbial risk assessment of occupational and public risks associated with bioaerosols generated during the application of dairy cattle wastewater as biofertilizer

The reuse or recycling of wastewater provides environmental and economic benefits, representing a sustainable and circular alternative for the management of liquid waste. However, the application of effluents to agricultural crops via spraying creates a potentially dangerous situation for individuals exposed to airborne pathogens. This study used Quantitative Microbial Risk Assessment (QMRA) tools to quantitatively assess the microbial risks of occupational and public exposures to bioaerosols in fertigation scenarios by spraying untreated and treated dairy cattle wastewater. Analyses of Escherichia coli (EC) and spores of Clostridium perfringens (CpSP) in raw and treated effluents as well as pathogen / indicator ratios from the literature were used to estimate the concentrations of Escherichia coli O157:H7 (EC O157:H7) and Cryptospodirium spp. (Crypto) in the air, and the results were applied to an atmospheric microbiological dispersion model. From the concentrations of pathogens in the air, infectious risks for downwind receptors were calculated. The risks of infection by EC O157:H7 to workers at 10 m and 50 m away from the emission source ranged between 3.81 × 10 1 and 2.68 × 10 3 pppy (per person per year), whereas to residents at 100 m and 500 m ranged from 4.59 × 10 1 to 1.51 × 10 4 pppy. Peak values (95th percentile) of occupational and public risks associated with the exposure to Crypto were 3.41 × 10 3 and 6.84 × 10 4 pppy at 10 m and 50 m from the source, respectively, and were lower than 1.48 × 10 6 pppy regarding exposures to CpSP. Anaerobic digestion reduced risks by approximately one order of magnitude. The distance from the source was inversely proportional to the risk of exposure. It is recommended that wastewater is treated prior to its reuse and the adoption of application methods with low aerosolization potential. In addition, the need for workers to use personal protective equipment (PPE) is highlighted.

Landspreading with co-digested cattle slurry, with or without pasteurisation, as a mitigation strategy against pathogen, nutrient and metal contamination associated with untreated slurry

North Atlantic European grassland systems have a low nutrient use efficiency and high rainfall. This grassland is typically amended with unprocessed slurry, which counteracts soil organic matter depletion and provides essential plant micronutrients but can be mobilised during rainfall events thereby contributing to pathogen, nutrient and metal incidental losses. Co-digesting slurry with waste from food processing mitigates agriculture-associated environmental impacts but may alter microbial, nutrient and metal profiles and their transmission to watercourses, and/or soil persistence, grass yield and uptake. The impact of EU and alternative pasteurisation regimes on transmission potential of these various pollutants is not clearly understood, particularly in pasture-based agricultural systems. This study utilized simulated rainfall (Amsterdam drip-type) at a high intensity indicative of a worst-case scenario of ~11 mm hr^-1 applied to plots 1, 2, 15 and 30 days after grassland application of slurry, unpasteurised digestate, pasteurised digestate (two conditions) and untreated controls. Runoff and soil samples were collected and analysed for a suite of potential pollutants including bacteria, nutrients and metals following rainfall simulation. Grass samples were collected for three months following application to assess yield as well as nutrient and metal uptake. For each environmental parameter tested: microbial, nutrient and metal runoff losses; accumulation in soil and uptake in grass, digestate from anaerobic co-digestion of slurry with food processing waste resulted in lower pollution potential than traditional landspreading of slurry without treatment. Reduced microbial runoff from digestate was the most prominent advantage of digestate application. Pasteurisation of the digestate further augmented those environmental benefits, without impacting grass output. Anaerobic co-digestion of slurry is therefore a multi-beneficial circular approach to reducing impacts of livestock production on the environment.

Effect of Pasteurisation on Methane Yield from Food Waste and Other Substrates in Anaerobic Digestion

The effect of pasteurisation and co-pasteurisation on biochemical methane potential values in anaerobic digestion (AD) was studied. Pasteurisation prior to digestion in a biogas plant is a common hygienisation method for organic materials which contain or have been in contact with animal by-products. Tests were carried out on food waste, slaughterhouse waste, animal blood, cattle slurry, potato waste, card packaging and the organic fraction of municipal solid waste (OFMSW); pasteurisation at 70 °C for 1 h was applied. Pasteurisation had increased the methane yields of blood (+15%) and potato waste (+12%) only, which both had a low content of structural carbohydrates (hemi-cellulose and cellulose) but a particularly high content of either non-structural carbohydrates such as starch (potato waste) or proteins (blood). With food waste, card packaging and cattle slurry, pasteurisation had no observable impact on the methane yield. Slaughterhouse waste and OFMSW yielded less methane after pasteurisation in the experiments (but statistical significance of the difference between pasteurised and unpasteurised slaughterhouse waste or OFMSW was not confirmed in this work). It is concluded that pasteurisation can positively impact the methane yield of some specific substrates, such as potato waste, where heat-treatment may induce gelatinisation with release of the starch molecules. For most substrates, however, pasteurisation at 70 °C is unlikely to increase the methane yield. It is unlikely to improve biodegradability of lignified materials, and it may reduce the methane yield from substrates which contain high contents of volatile components. Furthermore, in this experimental study, the obtained methane yield was unaffected by whether the substrates were pasteurised individually and then co-digested or co-pasteurised as a mixture before batch digestion.

Anaerobic co-digestion of sewage sludge with cellulose, protein, and lipids: Role of rheology and digestibility

Rheology is known to have an impact on the performance of digesters, but the effect of additional substrates (co-digestion) is poorly understood. The main objective of this study was to investigate the effects of the addition of cellulose, protein and lipids to substrates on the rheological behaviour and biogas production of the mixture of primary sludge (PS) and waste-activated sludge (WAS) in a batch system. A mixture of PS and WAS to form the main substrate was anaerobically co-digested with different types of organic matter (cellulose, protein and lipids) as co-substrates at different co-substrate to main substrate ratios of 2-8 (wt%) under mesophilic conditions and below ammonia inhibition levels. Yield stress (τ_y) and the flow consistency index (k) of the combined feed in the case of cellulose and protein were significantly dependent on the amount of co-substrate added, while there was an insignificant impact on these properties when lipids were added. Cellulose significantly increased τ_y and k in the feed, which resulted in poor fluidity and the improper homogenisation of the digester content, and consequently decreased the biogas yield. In contrast, the biogas yield was improved through the addition of 2% to 6% protein despite an increase in τ_y and k of the feed, but the methane yield decreased at 7% and 8% levels of protein concentration. This observation indicates that the threshold for τ_y and k of the digester media depends on the organic nature and digestibility of the substrate. There was no significant impact on the flow properties of the initial mixture when lipids were added, and their addition increased the biogas yield. A first-order kinetic reaction model was used for predicting the yield of methane from these digesters. The rate constant values revealed an increasing trend, with the highest for protein then lipids then cellulose.

Characterization of Clostridium Perfringens Isolates Collected from Three Agricultural Biogas Plants over a One-Year Period

Digestate produced by agricultural biogas plants (BGPs) may contain pathogenic bacteria. Among them, Clostridium perfringens deserves particular attention due to its ability to grow under anaerobic conditions and persist in amended soil. The aim of this study was to examine the potential pathogenicity and the antimicrobial resistance of C. perfringens in manure and digestate collected from three agricultural biogas plants (BGPs). A total of 157 isolates (92 from manure, 65 from digestate) were screened for genes encoding seven toxins (cpa, cpb, etx, iapcpe, netB, and cpb2). The 138 cpa positive isolates were then screened for tetA(P), tetB(P), tet(M), and erm(Q) genes and tested for antimicrobial susceptibility. The toxinotypes identified in both manure and digestate were type A (78.3% of the isolates), type G (16.7%), type C (3.6%), and type D (1.4%), whereas none of the isolates were type F. Moreover, half of the isolates carried the cpb2 gene. The overall prevalence of tetA(P) gene alone, tetA(P)-tetB(P) genes, and erm(Q) gene was 31.9, 34.8, and 6.5%, respectively. None of the isolates harbored the tet(M) gene. Multiple antimicrobial resistant isolates were found in samples that were collected from all the manure and digestates. Among them, 12.3% were highly resistant to some of the antibiotics tested, especially to clindamycin (MIC ≥ 16 µg/mL) and tilmicosin (MIC > 64 µg/mL). Some isolates were highly resistant to antibiotics used in human medicine, including vancomycin (MIC > 8 µg/mL) and imipenem (MIC > 64 µg/mL). These results suggest that digestate may be a carrier of the virulent and multidrug resistant C. perfringens.

Stochasticity in microbiology: managing unpredictability to reach the Sustainable Development Goals

Pure (single) cultures of microorganisms and mixed microbial communities (microbiomes) have been important for centuries in providing renewable energy, clean water and food products to human society and will continue to play a crucial role to pursue the Sustainable Development Goals. To use microorganisms effectively, microbial engineered processes require adequate control. Microbial communities are shaped by manageable deterministic processes, but also by stochastic processes, which can promote unforeseeable variations and adaptations. Here, we highlight the impact of stochasticity in single culture and microbiome engineering. First, we discuss the concepts and mechanisms of stochasticity in relation to microbial ecology of single cultures and microbiomes. Second, we discuss the consequences of stochasticity in relation to process performance and human health, which are reflected in key disadvantages and important opportunities. Third, we propose a suitable decision tool to deal with stochasticity in which monitoring of stochasticity and setting the boundaries of stochasticity by regulators are central aspects. Stochasticity may give rise to some risks, such as the presence of pathogens in microbiomes. We argue here that by taking the necessary precautions and through clever monitoring and interpretation, these risks can be mitigated.

Different micro-aeration rates facilitate production of different end-products from source-diverted blackwater

The effects of micro-aeration on the performance of anaerobic sequencing batch reactors (ASBR) for blackwater treatment were investigated in this study. Different micro-aeration rates, 0, 5, 10, 50, and 150 mg O₂/L-reactor/cycle, and their effect on the hydrolysis, acidogenesis, and methanogenesis of blackwater were evaluated and compared at ambient temperature. Source-diverted blackwater (toilet water) contains high organic contents which can be recovered as biogas. Previous studies have found that anaerobic digestion of blackwater without micro-aeration can only recover upwards of less than 40% of chemical oxygen demand (COD) to methane at room temperature due to the low hydrolysis rate of biomass content in blackwater. This study achieved increases in blackwater hydrolysis (from 34.7% to 48.7%) and methane production (from 39.6% to 50.7%) with controlled micro-aeration (5 mg O₂/L-reactor/cycle). The microbial analysis results showed that hydrolytic/fermentative bacteria and acetoclastic methanogens (e.g. Methanosaeta) were in higher abundances in low-dose micro-aeration reactors (5 and 10 mg O₂/L-reactor/cycle), which facilitated syntrophic interactions between microorganisms. The relative abundance of oxygen-tolerant methanogen such as Methanosarcina greatly increased (from 1.5% to 11.4%) after oxygen injection. High oxygen dosages (50 and 150 mg O₂/L-reactor/cycle) led to reduced methane production and higher accumulation of volatile fatty acids, largely due to the oxygen inhibition on methanogens and degradation of organic matters by aerobic growth and respiration, as indicated by the predicted metagenome functions. By combining reactor performance results and microbial community analyses, this study demonstrated that low-dose micro-aeration improves blackwater biomethane recovery by enhancing hydrolysis efficiency and promoting the development of a functional microbial population, while medium to high-dose micro-aeration reduced the activities of certain anaerobes. It was also observed that medium-dose micro-aeration maximizes VFA accumulation, which may be used in two-stage anaerobic digesters.

Ranking hazards pertaining to human health concerns from land application of anaerobic digestate

Anaerobic digestion (AD) has been identified as one of the cleanest producers of green energy. AD typically uses organic materials as feedstock and, through a series of biological processes, produces methane. Farmyard manure and slurry (FYM&S) are important AD feedstock and are typically mixed with agricultural waste, grass and/or food wastes. The feedstock may contain many different pathogens which can survive the AD process and hence also possibly be present in the final digestate. In this study, a semi-quantitative screening tool was developed to rank pathogens of potential health concern emerging from AD digestate. A scoring system was used to categorise likely inactivation during AD, hazard pathways and finally, severity as determined from reported human mortality rates, number of global human-deaths and infections per 100,000 populations. Five different conditions including mesophilic and thermophilic AD and three different pasteurisation conditions were assessed in terms of specific pathogen inactivation. In addition, a number of scenarios were assessed to consider foodborne incidence data from Ireland and Europe and to investigate the impact of raw FYM&S application (without AD and pasteurisation). A sensitivity analysis revealed that the score for the mortality rate (S3) was the most sensitive parameter (rank coefficient 0.49) to influence the final score S; followed by thermal inactivation score (S1, 0.25) and potential contamination pathways (S2, 0.16). Across all the scenarios considered, the screening tool prioritised Cryptosporidium parvum, Salmonella spp., norovirus, Streptococcus pyogenes, enteropathogenic E. coli (EPEC), Mycobacterium spp., Salmonella typhi (followed by S. paratyphi), Clostridium spp., Listeria monocytogenes and Campylobacter coli as the highest-ranking pathogens of human health concern resulting from AD digestate in Ireland. This tool prioritises potentially harmful pathogens which can emerge from AD digestate and highlights where regulation and intervention may be required.

The significance of biomass in a circular economy

A circular economy relies on the value of resources being maximised indefinitely, requiring that virtually no unrecoverable waste occurs. Biomass is highly significant in a circular economy in terms of material products and the provision of energy. To establish a circular bioeconomy, the practical implications of biomass use need to be appreciated by stakeholders throughout the value chain, from product design to waste management. This review addresses sustainable biomass production and its function as a feedstock from a European perspective. Anaerobic digestion of food waste is used as a case study to represent appropriate waste treatments. Crucial challenges are (1) Uncoupling the petrochemical industry and biomass production with renewable fertilisers; (2) Providing plentiful biomass for bio-based products by prioritising other renewable sources of energy; (3) Waste arising from food and agriculture must be minimised and returned to the economy; (4) Enhancing stakeholder cooperation across value chains.

Cyclic and safety utilisation of Cu polluted biogas residue in saline-alkali soil

The proper disposal of copper (Cu) polluted plant residues after phytoremediation has attracted extensive attention. In this study, the Cu-polluted biogas residue produced through anaerobic digestion was applied directly. Wheat, soybean and pakchoi were grown in pots for four seasons over two years. The application dosage of Cu-polluted biogas residue was evaluated by measuring growth conditions of crops, Cu content in edible parts, and amelioration of saline-alkali soil. The results showed that the biomass of the crops, the content of soil organic matter, total N and available P and microbial diversity can be improved, and the Cu concentration of the edible parts was all lower than limit standard. Amendment with 2% biogas residue enhanced the growth of beneficial bacteria and fungi, and decreased the relative abundances of potentially pathogenic fungi in the saline-alkali soil. The results of this study provide a basis for the safe utilisation of copper-polluted plant residues.