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Zhang H, Mu R. Refining heart disease prediction accuracy using hybrid machine learning techniques with novel metaheuristic algorithms. Int J Cardiol 2024; 416:132506. [PMID: 39218253 DOI: 10.1016/j.ijcard.2024.132506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/14/2024] [Revised: 08/06/2024] [Accepted: 08/29/2024] [Indexed: 09/04/2024]
Abstract
Early diagnosis of heart disease is crucial, as it's one of the leading causes of death globally. Machine learning algorithms can be a powerful tool in achieving this goal. Therefore, this article aims to increase the accuracy of predicting heart disease using machine learning algorithms. Five classification models are explored: eXtreme Gradient Boosting (XGBC), Random Forest Classifier (RFC), Decision Tree Classifier (DTC), K-Nearest Neighbors Classifier (KNNC), and Logistic Regression Classifier (LRC). Additionally, four optimizers are evaluated: Slime mold Optimization Algorithm, Forest Optimization Algorithm, Pathfinder algorithm, and Giant Armadillo Optimization. To ensure robust model selection, a feature selection technique utilizing k-fold cross-validation is employed. This method identifies the most relevant features from the data, potentially improving model performance. The top three performing models are then coupled with the optimization algorithms to potentially enhance their generalizability and accuracy in predicting heart failure. In the final stage, the shortlisted models (XGBC, RFC, and DTC) were assessed using performance metrics like accuracy, precision, recall, F1-score, and Matthews Correlation Coefficient (MCC). This rigorous evaluation identified the XGGA hybrid model as the top performer, demonstrating its effectiveness in predicting heart failure. XGGA achieved impressive metrics, with an accuracy, precision, recall, and F1-score of 0.972 in the training phase, underscoring its robustness. Notably, the model's predictions deviated by less than 5.5 % for patients classified as alive and by less than 1.2 % for those classified as deceased compared to the actual outcomes, reflecting minimal error and high predictive reliability. In contrast, the DTC base model was the least effective, with an accuracy of 0.840 and a precision of 0.847. Overall, the optimization using the GAO algorithm significantly enhanced the performance of the models, highlighting the benefits of this approach.
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Affiliation(s)
- Haifeng Zhang
- The first people's Hospital of Baiyin, Baiyin, Gansu 730900, China
| | - Rui Mu
- The second people's Hospital of Baiyin, Baiyin, Gansu 730900, China.
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2
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Wang W, Mao Q, Tian Y, Zhang Y, Xiang Z, Ren L. FMD-UNet: fine-grained feature squeeze and multiscale cascade dilated semantic aggregation dual-decoder UNet for COVID-19 lung infection segmentation from CT images. Biomed Phys Eng Express 2024; 10:055031. [PMID: 39142295 DOI: 10.1088/2057-1976/ad6f12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Accepted: 08/14/2024] [Indexed: 08/16/2024]
Abstract
With the advancement of computer-aided diagnosis, the automatic segmentation of COVID-19 infection areas holds great promise for assisting in the timely diagnosis and recovery of patients in clinical practice. Currently, methods relying on U-Net face challenges in effectively utilizing fine-grained semantic information from input images and bridging the semantic gap between the encoder and decoder. To address these issues, we propose an FMD-UNet dual-decoder U-Net network for COVID-19 infection segmentation, which integrates a Fine-grained Feature Squeezing (FGFS) decoder and a Multi-scale Dilated Semantic Aggregation (MDSA) decoder. The FGFS decoder produces fine feature maps through the compression of fine-grained features and a weighted attention mechanism, guiding the model to capture detailed semantic information. The MDSA decoder consists of three hierarchical MDSA modules designed for different stages of input information. These modules progressively fuse different scales of dilated convolutions to process the shallow and deep semantic information from the encoder, and use the extracted feature information to bridge the semantic gaps at various stages, this design captures extensive contextual information while decoding and predicting segmentation, thereby suppressing the increase in model parameters. To better validate the robustness and generalizability of the FMD-UNet, we conducted comprehensive performance evaluations and ablation experiments on three public datasets, and achieved leading Dice Similarity Coefficient (DSC) scores of 84.76, 78.56 and 61.99% in COVID-19 infection segmentation, respectively. Compared to previous methods, the FMD-UNet has fewer parameters and shorter inference time, which also demonstrates its competitiveness.
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Affiliation(s)
- Wenfeng Wang
- School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, 201620, People's Republic of China
| | - Qi Mao
- School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, 201620, People's Republic of China
| | - Yi Tian
- School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, 201620, People's Republic of China
| | - Yan Zhang
- School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, 201620, People's Republic of China
| | - Zhenwu Xiang
- School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, 201620, People's Republic of China
| | - Lijia Ren
- School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, 201620, People's Republic of China
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Esmaeilzadeh P. Challenges and strategies for wide-scale artificial intelligence (AI) deployment in healthcare practices: A perspective for healthcare organizations. Artif Intell Med 2024; 151:102861. [PMID: 38555850 DOI: 10.1016/j.artmed.2024.102861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 03/19/2024] [Accepted: 03/25/2024] [Indexed: 04/02/2024]
Abstract
Healthcare organizations have realized that Artificial intelligence (AI) can provide a competitive edge through personalized patient experiences, improved patient outcomes, early diagnosis, augmented clinician capabilities, enhanced operational efficiencies, or improved medical service accessibility. However, deploying AI-driven tools in the healthcare ecosystem could be challenging. This paper categorizes AI applications in healthcare and comprehensively examines the challenges associated with deploying AI in medical practices at scale. As AI continues to make strides in healthcare, its integration presents various challenges, including production timelines, trust generation, privacy concerns, algorithmic biases, and data scarcity. The paper highlights that flawed business models and wrong workflows in healthcare practices cannot be rectified merely by deploying AI-driven tools. Healthcare organizations should re-evaluate root problems such as misaligned financial incentives (e.g., fee-for-service models), dysfunctional medical workflows (e.g., high rates of patient readmissions), poor care coordination between different providers, fragmented electronic health records systems, and inadequate patient education and engagement models in tandem with AI adoption. This study also explores the need for a cultural shift in viewing AI not as a threat but as an enabler that can enhance healthcare delivery and create new employment opportunities while emphasizing the importance of addressing underlying operational issues. The necessity of investments beyond finance is discussed, emphasizing the importance of human capital, continuous learning, and a supportive environment for AI integration. The paper also highlights the crucial role of clear regulations in building trust, ensuring safety, and guiding the ethical use of AI, calling for coherent frameworks addressing transparency, model accuracy, data quality control, liability, and ethics. Furthermore, this paper underscores the importance of advancing AI literacy within academia to prepare future healthcare professionals for an AI-driven landscape. Through careful navigation and proactive measures addressing these challenges, the healthcare community can harness AI's transformative power responsibly and effectively, revolutionizing healthcare delivery and patient care. The paper concludes with a vision and strategic suggestions for the future of healthcare with AI, emphasizing thoughtful, responsible, and innovative engagement as the pathway to realizing its full potential to unlock immense benefits for healthcare organizations, physicians, nurses, and patients while proactively mitigating risks.
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Affiliation(s)
- Pouyan Esmaeilzadeh
- Department of Information Systems and Business Analytics, College of Business, Florida International University (FIU), Modesto A. Maidique Campus, 11200 S.W. 8th St, RB 261B, Miami, FL 33199, United States.
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4
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Yadav A, Kumar A. Artificial intelligence in rectal cancer: What is the future? Artif Intell Cancer 2023; 4:11-22. [DOI: 10.35713/aic.v4.i2.11] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/15/2023] [Revised: 09/18/2023] [Accepted: 09/25/2023] [Indexed: 12/07/2023] Open
Abstract
Colorectal cancer (CRC) is the third most prevalent cancer in both men and women, and it is the second leading cause of cancer-related deaths globally. Around 60%-70% of CRC patients are diagnosed at advanced stages, with nearly 20% having liver metastases. It is noteworthy that the 5-year survival rates decline significantly from 80%-90% for localized disease to a mere 10%-15% for patients with metastasis at the time of diagnosis. Early diagnosis, appropriate therapeutic strategy, accurate assessment of treatment response, and prognostication is essential for better outcome. There has been significant technological development in the last couple of decades to improve the outcome of rectal cancer including Artificial intelligence (AI). AI is a broad term used to describe the study of machines that mimic human intelligence, such as perceiving the environment, drawing logical conclusions from observations, and performing complex tasks. At present AI has demonstrated a promising role in early diagnosis, prognosis, and treatment outcomes for patients with rectal cancer, a limited role in surgical decision making, and had a bright future.
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Affiliation(s)
- Alka Yadav
- Department of Surgical Gastroenterology, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Lucknow 226014, UP, India
| | - Ashok Kumar
- Department of Surgical Gastroenterology, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Lucknow 226014, UP, India
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Liu F, Zhu T, Wu X, Yang B, You C, Wang C, Lu L, Liu Z, Zheng Y, Sun X, Yang Y, Clifton L, Clifton DA. A medical multimodal large language model for future pandemics. NPJ Digit Med 2023; 6:226. [PMID: 38042919 PMCID: PMC10693607 DOI: 10.1038/s41746-023-00952-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Accepted: 10/24/2023] [Indexed: 12/04/2023] Open
Abstract
Deep neural networks have been integrated into the whole clinical decision procedure which can improve the efficiency of diagnosis and alleviate the heavy workload of physicians. Since most neural networks are supervised, their performance heavily depends on the volume and quality of available labels. However, few such labels exist for rare diseases (e.g., new pandemics). Here we report a medical multimodal large language model (Med-MLLM) for radiograph representation learning, which can learn broad medical knowledge (e.g., image understanding, text semantics, and clinical phenotypes) from unlabelled data. As a result, when encountering a rare disease, our Med-MLLM can be rapidly deployed and easily adapted to them with limited labels. Furthermore, our model supports medical data across visual modality (e.g., chest X-ray and CT) and textual modality (e.g., medical report and free-text clinical note); therefore, it can be used for clinical tasks that involve both visual and textual data. We demonstrate the effectiveness of our Med-MLLM by showing how it would perform using the COVID-19 pandemic "in replay". In the retrospective setting, we test the model on the early COVID-19 datasets; and in the prospective setting, we test the model on the new variant COVID-19-Omicron. The experiments are conducted on 1) three kinds of input data; 2) three kinds of downstream tasks, including disease reporting, diagnosis, and prognosis; 3) five COVID-19 datasets; and 4) three different languages, including English, Chinese, and Spanish. All experiments show that our model can make accurate and robust COVID-19 decision-support with little labelled data.
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Affiliation(s)
- Fenglin Liu
- Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, UK.
| | - Tingting Zhu
- Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, UK
| | - Xian Wu
- Jarvis Research Center, Tencent YouTu Lab, Beijing, China
| | - Bang Yang
- School of Computer Science, Peking University, Beijing, China
| | | | - Chenyang Wang
- Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, UK
| | - Lei Lu
- Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, UK
| | - Zhangdaihong Liu
- Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, UK
- Oxford-Suzhou Centre for Advanced Research, Suzhou, China
| | - Yefeng Zheng
- Jarvis Research Center, Tencent YouTu Lab, Beijing, China
| | - Xu Sun
- School of Computer Science, Peking University, Beijing, China
| | - Yang Yang
- School of Public Health, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | - Lei Clifton
- Nuffield Department of Population Health, University of Oxford, Oxford, UK
| | - David A Clifton
- Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, UK.
- Oxford-Suzhou Centre for Advanced Research, Suzhou, China.
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Tehrani SSM, Zarvani M, Amiri P, Ghods Z, Raoufi M, Safavi-Naini SAA, Soheili A, Gharib M, Abbasi H. Visual transformer and deep CNN prediction of high-risk COVID-19 infected patients using fusion of CT images and clinical data. BMC Med Inform Decis Mak 2023; 23:265. [PMID: 37978393 PMCID: PMC10656999 DOI: 10.1186/s12911-023-02344-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2023] [Accepted: 10/16/2023] [Indexed: 11/19/2023] Open
Abstract
BACKGROUND Despite the globally reducing hospitalization rates and the much lower risks of Covid-19 mortality, accurate diagnosis of the infection stage and prediction of outcomes are clinically of interest. Advanced current technology can facilitate automating the process and help identifying those who are at higher risks of developing severe illness. This work explores and represents deep-learning-based schemes for predicting clinical outcomes in Covid-19 infected patients, using Visual Transformer and Convolutional Neural Networks (CNNs), fed with 3D data fusion of CT scan images and patients' clinical data. METHODS We report on the efficiency of Video Swin Transformers and several CNN models fed with fusion datasets and CT scans only vs. a set of conventional classifiers fed with patients' clinical data only. A relatively large clinical dataset from 380 Covid-19 diagnosed patients was used to train/test the models. RESULTS Results show that the 3D Video Swin Transformers fed with the fusion datasets of 64 sectional CT scans + 67 clinical labels outperformed all other approaches for predicting outcomes in Covid-19-infected patients amongst all techniques (i.e., TPR = 0.95, FPR = 0.40, F0.5 score = 0.82, AUC = 0.77, Kappa = 0.6). CONCLUSIONS We demonstrate how the utility of our proposed novel 3D data fusion approach through concatenating CT scan images with patients' clinical data can remarkably improve the performance of the models in predicting Covid-19 infection outcomes. SIGNIFICANCE Findings indicate possibilities of predicting the severity of outcome using patients' CT images and clinical data collected at the time of admission to hospital.
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Affiliation(s)
| | - Maral Zarvani
- Faculty of Engineering, Alzahra University, Tehran, Iran
| | - Paria Amiri
- University of Erlangen-Nuremberg, Bavaria, Germany
| | - Zahra Ghods
- Faculty of Engineering, Alzahra University, Tehran, Iran
| | - Masoomeh Raoufi
- Department of Radiology, School of Medicine, Imam Hossein Hospital, Shahid Beheshti, University of Medical Sciences, Tehran, Iran
| | - Seyed Amir Ahmad Safavi-Naini
- Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Amirali Soheili
- School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | | | - Hamid Abbasi
- Auckland Bioengineering Institute, University of Auckland, Auckland, 1010, New Zealand.
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7
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Firatoglu ZA. The effect of natural ventilation on airborne transmission of the COVID-19 virus spread by sneezing in the classroom. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 896:165113. [PMID: 37391140 PMCID: PMC10306413 DOI: 10.1016/j.scitotenv.2023.165113] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Revised: 06/21/2023] [Accepted: 06/23/2023] [Indexed: 07/02/2023]
Abstract
Since school classrooms are of vital importance due to their impact on public health in COVID-19 and similar epidemics, it is imperative to develop new ventilation strategies to reduce the risk of transmission of the virus in the classroom. To be able to develop new ventilation strategies, the effect of local flow behaviors in the classroom on the airborne transmission of the virus under the most dramatic conditions must first be determined. In this study, the effect of natural ventilation on the airborne transmission of COVID-19-like viruses in the classroom in the case of sneezing by two infected students in a reference secondary school classroom was investigated in five scenarios. Firstly, experimental measurements were carried out in the reference class to validate the computational fluid dynamics (CFD) simulation results and determine the boundary conditions. Next, the effects of local flow behaviors on the airborne transmission of the virus were evaluated for five scenarios using the Eulerian-Lagrange method, a discrete phase model, and a temporary three-dimensional CFD model. In all scenarios, immediately after sneezing, between 57 and 60.2 % of the droplets containing the virus, mostly large and medium-sized (150 μm < d < 1000 μm) settled on the infected student's desk, while small droplets continued to move in the flow field. In addition, it was determined that the effect of natural ventilation in the classroom on the travel of virus droplets in the case of Redh < 8.04 × 104 (Reynolds number, Redh=Udh/νu, dh and are fluid velocity, hydraulic diameters of the door and window sections of the class and kinematic viscosity, respectively) was negligible.
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Affiliation(s)
- Z A Firatoglu
- Department of Mechanical Engineering, University of Harran, TR-63050 Sanliurfa, Turkey.
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8
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Xu W, Nie L, Chen B, Ding W. Dual-stream EfficientNet with adversarial sample augmentation for COVID-19 computer aided diagnosis. Comput Biol Med 2023; 165:107451. [PMID: 37696184 DOI: 10.1016/j.compbiomed.2023.107451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 08/17/2023] [Accepted: 09/04/2023] [Indexed: 09/13/2023]
Abstract
Though a series of computer aided measures have been taken for the rapid and definite diagnosis of 2019 coronavirus disease (COVID-19), they generally fail to achieve high enough accuracy, including the recently popular deep learning-based methods. The main reasons are that: (a) they generally focus on improving the model structures while ignoring important information contained in the medical image itself; (b) the existing small-scale datasets have difficulty in meeting the training requirements of deep learning. In this paper, a dual-stream network based on the EfficientNet is proposed for the COVID-19 diagnosis based on CT scans. The dual-stream network takes into account the important information in both spatial and frequency domains of CT scans. Besides, Adversarial Propagation (AdvProp) technology is used to address the insufficient training data usually faced by the deep learning-based computer aided diagnosis and also the overfitting issue. Feature Pyramid Network (FPN) is utilized to fuse the dual-stream features. Experimental results on the public dataset COVIDx CT-2A demonstrate that the proposed method outperforms the existing 12 deep learning-based methods for COVID-19 diagnosis, achieving an accuracy of 0.9870 for multi-class classification, and 0.9958 for binary classification. The source code is available at https://github.com/imagecbj/covid-efficientnet.
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Affiliation(s)
- Weijie Xu
- Engineering Research Center of Digital Forensics, Ministry of Education, Nanjing University of Information Science and Technology, Nanjing, 210044, China
| | - Lina Nie
- Engineering Research Center of Digital Forensics, Ministry of Education, Nanjing University of Information Science and Technology, Nanjing, 210044, China
| | - Beijing Chen
- Engineering Research Center of Digital Forensics, Ministry of Education, Nanjing University of Information Science and Technology, Nanjing, 210044, China; Jiangsu Collaborative Innovation Center of Atmospheric Environment and Equipment Technology (CICAEET), Nanjing University of Information Science and Technology, Nanjing, 210044, China.
| | - Weiping Ding
- School of Information Science and Technology, Nantong University, Nantong, 226019, China
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9
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Haennah JHJ, Christopher CS, King GRG. Prediction of the COVID disease using lung CT images by Deep Learning algorithm: DETS-optimized Resnet 101 classifier. Front Med (Lausanne) 2023; 10:1157000. [PMID: 37746067 PMCID: PMC10513469 DOI: 10.3389/fmed.2023.1157000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Accepted: 08/18/2023] [Indexed: 09/26/2023] Open
Abstract
As a result of the COVID-19 (coronavirus) disease due to SARS-CoV2 becoming a pandemic, it has spread over the globe. It takes time to evaluate the results of the laboratory tests because of the rising number of cases each day. Therefore, there are restrictions in terms of both therapy and findings. A clinical decision-making system with predictive algorithms is needed to alleviate the pressure on healthcare systems via Deep Learning (DL) algorithms. With the use of DL and chest scans, this research intends to determine COVID-19 patients by utilizing the Transfer Learning (TL)-based Generative Adversarial Network (Pix 2 Pix-GAN). Moreover, the COVID-19 images are then classified as either positive or negative using a Duffing Equation Tuna Swarm (DETS)-optimized Resnet 101 classifier trained on synthetic and real images from the Kaggle lung CT Covid dataset. Implementation of the proposed technique is done using MATLAB simulations. Besides, is evaluated via accuracy, precision, F1-score, recall, and AUC. Experimental findings show that the proposed prediction model identifies COVID-19 patients with 97.2% accuracy, a recall of 95.9%, and a specificity of 95.5%, which suggests the proposed predictive model can be utilized to forecast COVID-19 infection by medical specialists for clinical prediction research and can be beneficial to them.
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Affiliation(s)
- J. H. Jensha Haennah
- St. Xavier’s Catholic College of Engineering, Affiliated to Anna University Chennai, Tamil Nadu, India
| | | | - G. R. Gnana King
- Sahrdaya College of Engineering and Technology, Thrissur, Kerala, India
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10
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Ahmadinejad N, Ayyoubzadeh SM, Zeinalkhani F, Delazar S, Javanmard Z, Ahmadinejad Z, Mohajeri A, Esmaeili M. Discovering associations between radiological features and COVID-19 patients' deterioration. Health Sci Rep 2023; 6:e1257. [PMID: 37711676 PMCID: PMC10497911 DOI: 10.1002/hsr2.1257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 04/17/2023] [Accepted: 04/23/2023] [Indexed: 09/16/2023] Open
Abstract
Background and Aims Data mining methods are effective and well-known tools for developing predictive models and extracting useful information from various data of patients. The present study aimed to predict the severity of patients with COVID-19 by applying the rule mining method using characteristics of medical images. Methods This retrospective study has analyzed the radiological data from 104 COVID-19 hospitalized patients diagnosed with COVID-19 in a hospital in Iran. A data set containing 75 binary features was generated. Apriori method is utilized for association rule mining on this data set. Only rules with confidence equal to one were generated. The performance of rules is calculated by support, coverage, and lift indexes. Results Ten rules were extracted with only X-ray-related features on cases referred to ICU. The Support and Coverage index of all of these rules was 0.087, and the Lift index of them was 1.58. Thirteen rules were extracted from only CT scan-related features on cases referred to ICU. The CXR_Pleural effusion feature has appeared in all the rules. The CXR_Left upper zone feature appears in 9 rules out of 10. The Support and Coverage index of all rules was 0.15, and the Lift index of all rules was 1.63. the CT_Adjacent pleura thickening feature has appeared in all rules, and the CT_Right middle lobe appeared in 9 rules out of 13. Conclusion This study could reveal the application and efficacy of CXR and CT scan imaging modalities in predicting ICU admission to a major COVID-19 infection via data mining methods. The findings of this study could help data scientists, radiologists, and clinicians in the future development and implementation of these methods in similar conditions and timely and appropriately save patients from adverse disease outcomes.
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Affiliation(s)
- Nasrin Ahmadinejad
- Advanced Diagnostic and Interventional Radiology Research Center (ADIR)Tehran University of Medical SciencesTehranIran
- Radiology Department, Cancer Institute, Imam Khomeini Hospital ComplexTehran University of Medical ScienceTehranIran
| | - Seyed Mohammad Ayyoubzadeh
- Department of Health Information Management, School of Allied Medical SciencesTehran University of Medical SciencesTehranIran
| | - Fahimeh Zeinalkhani
- Advanced Diagnostic and Interventional Radiology Research Center (ADIR)Tehran University of Medical SciencesTehranIran
- Radiology Department, Cancer Institute, Imam Khomeini Hospital ComplexTehran University of Medical ScienceTehranIran
| | - Sina Delazar
- Advanced Diagnostic and Interventional Radiology Research Center (ADIR)Tehran University of Medical SciencesTehranIran
| | - Zohreh Javanmard
- Department of Health Information Management, School of Allied Medical SciencesTehran University of Medical SciencesTehranIran
| | - Zahra Ahmadinejad
- Department of Infectious Diseases, Imam Khomeini Hospital ComplexTehran University of Medical SciencesTehranIran
| | | | - Marzieh Esmaeili
- Department of Health Information Management, School of Allied Medical SciencesTehran University of Medical SciencesTehranIran
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11
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Gu J, Qian X, Zhang Q, Zhang H, Wu F. Unsupervised domain adaptation for Covid-19 classification based on balanced slice Wasserstein distance. Comput Biol Med 2023; 164:107207. [PMID: 37480680 DOI: 10.1016/j.compbiomed.2023.107207] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 06/06/2023] [Accepted: 06/25/2023] [Indexed: 07/24/2023]
Abstract
Covid-19 has swept the world since 2020, taking millions of lives. In order to seek a rapid diagnosis of Covid-19, deep learning-based Covid-19 classification methods have been extensively developed. However, deep learning relies on many samples with high-quality labels, which is expensive. To this end, we propose a novel unsupervised domain adaptation method to process many different but related Covid-19 X-ray images. Unlike existing unsupervised domain adaptation methods that cannot handle conditional class distributions, we adopt a balanced Slice Wasserstein distance as the metric for unsupervised domain adaptation to solve this problem. Multiple standard datasets for domain adaptation and X-ray datasets of different Covid-19 are adopted to verify the effectiveness of our proposed method. Experimented by cross-adopting multiple datasets as source and target domains, respectively, our proposed method can effectively capture discriminative and domain-invariant representations with better data distribution matching.
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Affiliation(s)
- Jiawei Gu
- Affiliated Hospital of Nantong University, Nantong, 226001, China.
| | - Xuan Qian
- Affiliated Hospital of Nantong University, Nantong, 226001, China.
| | - Qian Zhang
- School of Data Science and Artificial Intelligence, Wenzhou University of Technology, Wenzhou, 325035, China.
| | - Hongliang Zhang
- College of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou, 325035, China.
| | - Fang Wu
- Department of Gastroenterology, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325035, China.
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12
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Rafique Q, Rehman A, Afghan MS, Ahmad HM, Zafar I, Fayyaz K, Ain Q, Rayan RA, Al-Aidarous KM, Rashid S, Mushtaq G, Sharma R. Reviewing methods of deep learning for diagnosing COVID-19, its variants and synergistic medicine combinations. Comput Biol Med 2023; 163:107191. [PMID: 37354819 PMCID: PMC10281043 DOI: 10.1016/j.compbiomed.2023.107191] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 05/28/2023] [Accepted: 06/19/2023] [Indexed: 06/26/2023]
Abstract
The COVID-19 pandemic has necessitated the development of reliable diagnostic methods for accurately detecting the novel coronavirus and its variants. Deep learning (DL) techniques have shown promising potential as screening tools for COVID-19 detection. In this study, we explore the realistic development of DL-driven COVID-19 detection methods and focus on the fully automatic framework using available resources, which can effectively investigate various coronavirus variants through modalities. We conducted an exploration and comparison of several diagnostic techniques that are widely used and globally validated for the detection of COVID-19. Furthermore, we explore review-based studies that provide detailed information on synergistic medicine combinations for the treatment of COVID-19. We recommend DL methods that effectively reduce time, cost, and complexity, providing valuable guidance for utilizing available synergistic combinations in clinical and research settings. This study also highlights the implication of innovative diagnostic technical and instrumental strategies, exploring public datasets, and investigating synergistic medicines using optimised DL rules. By summarizing these findings, we aim to assist future researchers in their endeavours by providing a comprehensive overview of the implication of DL techniques in COVID-19 detection and treatment. Integrating DL methods with various diagnostic approaches holds great promise in improving the accuracy and efficiency of COVID-19 diagnostics, thus contributing to effective control and management of the ongoing pandemic.
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Affiliation(s)
- Qandeel Rafique
- Department of Internal Medicine, Sahiwal Medical College, Sahiwal, 57040, Pakistan.
| | - Ali Rehman
- Department of General Medicine Govt. Eye and General Hospital Lahore, 54000, Pakistan.
| | - Muhammad Sher Afghan
- Department of Internal Medicine District Headquarter Hospital Faislaabad, 62300, Pakistan.
| | - Hafiz Muhamad Ahmad
- Department of Internal Medicine District Headquarter Hospital Bahawalnagar, 62300, Pakistan.
| | - Imran Zafar
- Department of Bioinformatics and Computational Biology, Virtual University Pakistan, 44000, Pakistan.
| | - Kompal Fayyaz
- Department of National Centre for Bioinformatics, Quaid-I-Azam University Islamabad, 45320, Pakistan.
| | - Quratul Ain
- Department of Chemistry, Government College Women University Faisalabad, 03822, Pakistan.
| | - Rehab A Rayan
- Department of Epidemiology, High Institute of Public Health, Alexandria University, 21526, Egypt.
| | - Khadija Mohammed Al-Aidarous
- Department of Computer Science, College of Science and Arts in Sharurah, Najran University, 51730, Saudi Arabia.
| | - Summya Rashid
- Department of Pharmacology & Toxicology, College of Pharmacy, Prince Sattam Bin Abdulaziz University, P.O. Box 173, Al-Kharj, 11942, Saudi Arabia.
| | - Gohar Mushtaq
- Center for Scientific Research, Faculty of Medicine, Idlib University, Idlib, Syria.
| | - Rohit Sharma
- Department of Rasashastra and Bhaishajya Kalpana, Faculty of Ayurveda, Institute of Medical Sciences, Banaras Hindu University, Varanasi, India.
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13
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Butt MJ, Malik AK, Qamar N, Yar S, Malik AJ, Rauf U. A Survey on COVID-19 Data Analysis Using AI, IoT, and Social Media. SENSORS (BASEL, SWITZERLAND) 2023; 23:5543. [PMID: 37420714 DOI: 10.3390/s23125543] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 06/04/2023] [Accepted: 06/07/2023] [Indexed: 07/09/2023]
Abstract
Coronaviruses are a well-established and deadly group of viruses that cause illness in both humans and animals. The novel type of this virus group, named COVID-19, was firstly reported in December 2019, and, with the passage of time, coronavirus has spread to almost all parts of the world. Coronavirus has been the cause of millions of deaths around the world. Furthermore, many countries are struggling with COVID-19 and have experimented with various kinds of vaccines to eliminate the deadly virus and its variants. This survey deals with COVID-19 data analysis and its impact on human social life. Data analysis and information related to coronavirus can greatly help scientists and governments in controlling the spread and symptoms of the deadly coronavirus. In this survey, we cover many areas of discussion related to COVID-19 data analysis, such as how artificial intelligence, along with machine learning, deep learning, and IoT, have worked together to fight against COVID-19. We also discuss artificial intelligence and IoT techniques used to forecast, detect, and diagnose patients of the novel coronavirus. Moreover, this survey also describes how fake news, doctored results, and conspiracy theories were spread over social media sites, such as Twitter, by applying various social network analysis and sentimental analysis techniques. A comprehensive comparative analysis of existing techniques has also been conducted. In the end, the Discussion section presents different data analysis techniques, provides future directions for research, and suggests general guidelines for handling coronavirus, as well as changing work and life conditions.
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Affiliation(s)
- Muhammad Junaid Butt
- Department of Computer Science, COMSATS University Islamabad (CUI), Islamabad 45550, Pakistan
| | - Ahmad Kamran Malik
- Department of Computer Science, COMSATS University Islamabad (CUI), Islamabad 45550, Pakistan
| | - Nafees Qamar
- School of Health and Behavioral Sciences, Bryant University, Smithfield, RI 02917, USA
| | - Samad Yar
- Department of Computer Science, COMSATS University Islamabad (CUI), Islamabad 45550, Pakistan
| | - Arif Jamal Malik
- Department of Software Engineering, Foundation University, Islamabad 44000, Pakistan
| | - Usman Rauf
- Department of Mathematics and Computer Science, Mercy College, Dobbs Ferry, NY 10522, USA
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14
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Sailunaz K, Özyer T, Rokne J, Alhajj R. A survey of machine learning-based methods for COVID-19 medical image analysis. Med Biol Eng Comput 2023; 61:1257-1297. [PMID: 36707488 PMCID: PMC9883138 DOI: 10.1007/s11517-022-02758-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Accepted: 12/22/2022] [Indexed: 01/29/2023]
Abstract
The ongoing COVID-19 pandemic caused by the SARS-CoV-2 virus has already resulted in 6.6 million deaths with more than 637 million people infected after only 30 months since the first occurrences of the disease in December 2019. Hence, rapid and accurate detection and diagnosis of the disease is the first priority all over the world. Researchers have been working on various methods for COVID-19 detection and as the disease infects lungs, lung image analysis has become a popular research area for detecting the presence of the disease. Medical images from chest X-rays (CXR), computed tomography (CT) images, and lung ultrasound images have been used by automated image analysis systems in artificial intelligence (AI)- and machine learning (ML)-based approaches. Various existing and novel ML, deep learning (DL), transfer learning (TL), and hybrid models have been applied for detecting and classifying COVID-19, segmentation of infected regions, assessing the severity, and tracking patient progress from medical images of COVID-19 patients. In this paper, a comprehensive review of some recent approaches on COVID-19-based image analyses is provided surveying the contributions of existing research efforts, the available image datasets, and the performance metrics used in recent works. The challenges and future research scopes to address the progress of the fight against COVID-19 from the AI perspective are also discussed. The main objective of this paper is therefore to provide a summary of the research works done in COVID detection and analysis from medical image datasets using ML, DL, and TL models by analyzing their novelty and efficiency while mentioning other COVID-19-based review/survey researches to deliver a brief overview on the maximum amount of information on COVID-19-based existing researches.
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Affiliation(s)
- Kashfia Sailunaz
- Department of Computer Science, University of Calgary, Calgary, AB, Canada
| | - Tansel Özyer
- Department of Computer Engineering, Ankara Medipol University, Ankara, Turkey
| | - Jon Rokne
- Department of Computer Science, University of Calgary, Calgary, AB, Canada
| | - Reda Alhajj
- Department of Computer Science, University of Calgary, Calgary, AB, Canada.
- Department of Computer Engineering, Istanbul Medipol University, Istanbul, Turkey.
- Department of Health Informatics, University of Southern Denmark, Odense, Denmark.
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15
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Cruz Neto J, Oliveira JDD, Quirino GDS, Bubadué RDM. National Policy for Comprehensive Health of Lesbians, Gays, Bisexuals,Transvestites and Transgender: image analysis. CIENCIA & SAUDE COLETIVA 2023; 28:1809-1818. [PMID: 37255157 DOI: 10.1590/1413-81232023286.14252022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Accepted: 11/08/2022] [Indexed: 06/01/2023] Open
Abstract
This article analyzes the communication of the cover image of the National Policy for Comprehensive Health of Lesbians, Gays, Bisexuals, Transvestites, and Transgender. This is a qualitative-descriptive study with image analysis conducted in the light of Judith Butler's concepts. The textual corpus included 13 texts, six pictures, and the background. The main colors used were black and blue. The human figures that perform the male gender are superimposed upon those of the female gender. The texts only situate the content of the document as public policy. The principle of knowledge disseminated was gender identity, and this term was identified more frequently. The cover of the document reinforces stereotypes by representing traditional gender performances in a fixed way and disregarding the political use of the colors of the movement it purports to represent.
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Affiliation(s)
- João Cruz Neto
- Universidade da Integração Internacional da Lusofonia Afro-Brasileira. Av. da Abolição 3, Centro. 62790-000 Redenção CE Brasil.
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16
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VJ MJ, S K. Multi-classification approach for lung nodule detection and classification with proposed texture feature in X-ray images. MULTIMEDIA TOOLS AND APPLICATIONS 2023:1-28. [PMID: 37362672 PMCID: PMC10188326 DOI: 10.1007/s11042-023-15281-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Revised: 10/22/2022] [Accepted: 04/06/2023] [Indexed: 06/28/2023]
Abstract
Lung cancer is a widespread type of cancer around the world. It is, moreover, a lethal type of tumor. Nevertheless, analysis signifies that earlier recognition of lung cancer considerably develops the possibilities of survival. By deploying X-rays and Computed Tomography (CT) scans, radiologists could identify hazardous nodules at an earlier period. However, when more citizens adopt these diagnoses, the workload rises for radiologists. Computer Assisted Diagnosis (CAD)-based detection systems can identify these nodules automatically and could assist radiologists in reducing their workloads. However, they result in lower sensitivity and a higher count of false positives. The proposed work introduces a new approach for Lung Nodule (LN) detection. At first, Histogram Equalization (HE) is done during pre-processing. As the next step, improved Balanced Iterative Reducing and Clustering using Hierarchies (BIRCH) based segmentation is done. Then, the characteristics, including "Gray Level Run-Length Matrix (GLRM), Gray Level Co-Occurrence Matrix (GLCM), and the proposed Local Vector Pattern (LVP)," are retrieved. These features are then categorized utilizing an optimized Convolutional Neural Network (CNN) and itdetectsnodule or non-nodule images. Subsequently, Long Short-Term Memory (LSTM) is deployed to categorize nodule types (benign, malignant, or normal). The CNN weights are fine-tuned by the Chaotic Population-based Beetle Swarm Algorithm (CP-BSA). Finally, the superiority of the proposed approach is confirmed across various measures. The developed approach has exhibited a high precision value of 0.9575 for the best case scenario, and high sensitivity value of 0.9646 for the mean case scenario. The superiority of the proposed approach is confirmed across various measures.
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Affiliation(s)
- Mary Jaya VJ
- Department of Computer Science, Assumption Autonomous College, Changanassery, Kerala India
| | - Krishnakumar S
- Department of Electronics, School of Technology and Applied Sciences, Mahatma Gandhi University Research Centre, Kochi, Kerala India
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17
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Rezazadeh B, Asghari P, Rahmani AM. Computer-aided methods for combating Covid-19 in prevention, detection, and service provision approaches. Neural Comput Appl 2023; 35:14739-14778. [PMID: 37274420 PMCID: PMC10162652 DOI: 10.1007/s00521-023-08612-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Accepted: 04/11/2023] [Indexed: 06/06/2023]
Abstract
The infectious disease Covid-19 has been causing severe social, economic, and human suffering across the globe since 2019. The countries have utilized different strategies in the last few years to combat Covid-19 based on their capabilities, technological infrastructure, and investments. A massive epidemic like this cannot be controlled without an intelligent and automatic health care system. The first reaction to the disease outbreak was lockdown, and researchers focused more on developing methods to diagnose the disease and recognize its behavior. However, as the new lifestyle becomes more normalized, research has shifted to utilizing computer-aided methods to monitor, track, detect, and treat individuals and provide services to citizens. Thus, the Internet of things, based on fog-cloud computing, using artificial intelligence approaches such as machine learning, and deep learning are practical concepts. This article aims to survey computer-based approaches to combat Covid-19 based on prevention, detection, and service provision. Technically and statistically, this article analyzes current methods, categorizes them, presents a technical taxonomy, and explores future and open issues.
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Affiliation(s)
- Bahareh Rezazadeh
- Computer Engineering Department, Science and Research Branch, Islamic Azad University, Tehran, Iran
| | - Parvaneh Asghari
- Department of Computer Engineering, Central Tehran Branch, Islamic Azad University, Tehran, Iran
| | - Amir Masoud Rahmani
- Future Technology Research Center, National Yunlin University of Science and Technology, 123 University Road, Section 3, Douliou, Yunlin, 64002 Taiwan
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18
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Yang J, Li X, Cheng JZ, Xue Z, Shi F, Ji Y, Wang X, Yang F. Segment aorta and localize landmarks simultaneously on noncontrast CT using a multitask learning framework for patients without severe vascular disease. Comput Biol Med 2023; 160:107002. [PMID: 37187136 DOI: 10.1016/j.compbiomed.2023.107002] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Revised: 03/29/2023] [Accepted: 05/02/2023] [Indexed: 05/17/2023]
Abstract
BACKGROUND Non-contrast chest CT is widely used for lung cancer screening, and its images carry potential information of the thoracic aorta. The morphological assessment of the thoracic aorta may have potential value in the presymptomatic detection of thoracic aortic-related diseases and the risk prediction of future adverse events. However, due to low vasculature contrast in such images, visual assessment of aortic morphology is challenging and highly depends on physicians' experience. PURPOSE The main objective of this study is to propose a novel multi-task framework based on deep learning for simultaneous aortic segmentation and localization of key landmarks on unenhanced chest CT. The secondary objective is to use the algorithm to measure quantitative features of thoracic aorta morphology. METHODS The proposed network is composed of two subnets to carry out segmentation and landmark detection, respectively. The segmentation subnet aims to demarcate the aortic sinuses of the Valsalva, aortic trunk and aortic branches, whereas the detection subnet is devised to locate five landmarks on the aorta to facilitate morphology measures. The networks share a common encoder and run decoders in parallel, taking full advantage of the synergy of the segmentation and landmark detection tasks. Furthermore, the volume of interest (VOI) module and the squeeze-and-excitation (SE) block with attention mechanisms are incorporated to further boost the capability of feature learning. RESULTS Benefiting from the multitask framework, we achieved a mean Dice score of 0.95, average symmetric surface distance of 0.53 mm, Hausdorff distance of 2.13 mm for aortic segmentation, and mean square error (MSE) of 3.23 mm for landmark localization in 40 testing cases. CONCLUSION We proposed a multitask learning framework which can perform segmentation of the thoracic aorta and localization of landmarks simultaneously and achieved good results. It can support quantitative measurement of aortic morphology for further analysis of aortic diseases, such as hypertension.
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Affiliation(s)
- Jinrong Yang
- Department of Radiology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430022, China
| | - Xiang Li
- Shanghai United Imaging Intelligence Co. Ltd., Shanghai, 201807, China
| | - Jie-Zhi Cheng
- Shanghai United Imaging Intelligence Co. Ltd., Shanghai, 201807, China
| | - Zhong Xue
- Shanghai United Imaging Intelligence Co. Ltd., Shanghai, 201807, China
| | - Feng Shi
- Shanghai United Imaging Intelligence Co. Ltd., Shanghai, 201807, China
| | - Yuqing Ji
- Shanghai United Imaging Intelligence Co. Ltd., Shanghai, 201807, China
| | - Xuechun Wang
- Shanghai United Imaging Intelligence Co. Ltd., Shanghai, 201807, China.
| | - Fan Yang
- Department of Radiology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430022, China.
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19
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Karbasi Z, Gohari SH, Sabahi A. Bibliometric analysis of the use of artificial intelligence in COVID-19 based on scientific studies. Health Sci Rep 2023; 6:e1244. [PMID: 37152228 PMCID: PMC10158785 DOI: 10.1002/hsr2.1244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 04/11/2023] [Accepted: 04/16/2023] [Indexed: 05/09/2023] Open
Abstract
Background and Aims One such strategy is citation analysis used by researchers for research planning an article referred to by another article receives a "citation." By using bibliometric analysis, the development of research areas and authors' influence can be investigated. The current study aimed to identify and analyze the characteristics of 100 highly cited articles on the use of artificial intelligence concerning COVID-19. Methods On July 27, 2022, this database was searched using the keywords "artificial intelligence" and "COVID-19" in the topic. After extensive searching, all retrieved articles were sorted by the number of citations, and 100 highly cited articles were included based on the number of citations. The following data were extracted: year of publication, type of study, name of journal, country, number of citations, language, and keywords. Results The average number of citations for 100 highly cited articles was 138.54. The top three cited articles with 745, 596, and 549 citations. The top 100 articles were all in English and were published in 2020 and 2021. China was the most prolific country with 19 articles, followed by the United States with 15 articles and India with 10 articles. Conclusion The current bibliometric analysis demonstrated the significant growth of the use of artificial intelligence for COVID-19. Using these results, research priorities are more clearly defined, and researchers can focus on hot topics.
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Affiliation(s)
- Zahra Karbasi
- Medical Informatics Research Center, Institute for Futures Studies in HealthKerman University of Medical SciencesKermanIran
- Department of Health Information Sciences, Faculty of Management and Medical Information SciencesKerman University of Medical SciencesKermanIran
| | - Sadrieh H. Gohari
- Medical Informatics Research Center, Institute for Futures Studies in HealthKerman University of Medical SciencesKermanIran
| | - Azam Sabahi
- Department of Health Information Technology, Ferdows School of Health and Allied Medical SciencesBirjand University of Medical SciencesBirjandIran
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20
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Li G, Togo R, Ogawa T, Haseyama M. Boosting automatic COVID-19 detection performance with self-supervised learning and batch knowledge ensembling. Comput Biol Med 2023; 158:106877. [PMID: 37019015 PMCID: PMC10063457 DOI: 10.1016/j.compbiomed.2023.106877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 03/15/2023] [Accepted: 03/30/2023] [Indexed: 04/03/2023]
Abstract
PROBLEM Detecting COVID-19 from chest X-ray (CXR) images has become one of the fastest and easiest methods for detecting COVID-19. However, the existing methods usually use supervised transfer learning from natural images as a pretraining process. These methods do not consider the unique features of COVID-19 and the similar features between COVID-19 and other pneumonia. AIM In this paper, we want to design a novel high-accuracy COVID-19 detection method that uses CXR images, which can consider the unique features of COVID-19 and the similar features between COVID-19 and other pneumonia. METHODS Our method consists of two phases. One is self-supervised learning-based pertaining; the other is batch knowledge ensembling-based fine-tuning. Self-supervised learning-based pretraining can learn distinguished representations from CXR images without manually annotated labels. On the other hand, batch knowledge ensembling-based fine-tuning can utilize category knowledge of images in a batch according to their visual feature similarities to improve detection performance. Unlike our previous implementation, we introduce batch knowledge ensembling into the fine-tuning phase, reducing the memory used in self-supervised learning and improving COVID-19 detection accuracy. RESULTS On two public COVID-19 CXR datasets, namely, a large dataset and an unbalanced dataset, our method exhibited promising COVID-19 detection performance. Our method maintains high detection accuracy even when annotated CXR training images are reduced significantly (e.g., using only 10% of the original dataset). In addition, our method is insensitive to changes in hyperparameters. CONCLUSION The proposed method outperforms other state-of-the-art COVID-19 detection methods in different settings. Our method can reduce the workloads of healthcare providers and radiologists.
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Affiliation(s)
- Guang Li
- Graduate School of Information Science and Technology, Hokkaido University, N-14, W-9, Kita-Ku, Sapporo, 060-0814, Japan.
| | - Ren Togo
- Faculty of Information Science and Technology, Hokkaido University, N-14, W-9, Kita-Ku, Sapporo, 060-0814, Japan.
| | - Takahiro Ogawa
- Faculty of Information Science and Technology, Hokkaido University, N-14, W-9, Kita-Ku, Sapporo, 060-0814, Japan.
| | - Miki Haseyama
- Faculty of Information Science and Technology, Hokkaido University, N-14, W-9, Kita-Ku, Sapporo, 060-0814, Japan.
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21
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Deng Y, Shang W, Zhang X, Guo J, Wang Y, Zhang Z, Hong J, Li Z, Xie L. Quantification of plasmodesmata frequency under three-dimensional view using focused ion beam-scanning electron microscopy and image analysis. Micron 2023; 166:103413. [PMID: 36657308 DOI: 10.1016/j.micron.2023.103413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 12/08/2022] [Accepted: 01/09/2023] [Indexed: 01/15/2023]
Abstract
The quantitative study of plasmodesmata (PD) frequency is routine in plant science for providing information on the potential of intercellular transportation. Here, we report quantification of plasmodesmatal frequency in virus-infected tobacco vascular tissues using serial sectioning and image analysis. The image datasets were collected by focused ion beam-scanning electron microscopy (FIB-SEM), and the measurements of plasmodesmatal frequency were performed after image analysis with commercial computational programs. With a 5-nm step size (less than half the diameter of PD) during FIB sectioning, exhaustive PD sampling was performed in regions of interest. Segmentation of cell wall (CW) and PD from the background densities was performed manually, and PD were assigned automatically to individual CW interfaces by image analysis and then quantified. The PD quantification results were used to compare the plamodesmatal frequencies among different CW interfaces of individual cells and the average frequencies among different cell types were calculated. CWs lacking PD distribution were found in several cellular types, and the PD frequency were used to determine the possible pathways of PD-based symplasmic transportation. The method enables imaging of samples of several cells containing multiple CW interfaces and minimizes PD omission during sectioning and imaging.
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Affiliation(s)
- Yinlu Deng
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China; Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insect Pests, Zhejiang University, Hangzhou 310058, China
| | - Weina Shang
- Life Sciences Institute and Innovation Center for Cell Signaling Network, Zhejiang University, Hangzhou 310058, China
| | - Xiaomin Zhang
- Analysis Center of Agrobiology and Environmental Sciences, Zhejiang University, Hangzhou 310058, China
| | - Jiansheng Guo
- Department of Biophysics, Zhejiang University School of Medicine and Center of Cryo Electron Microscopy, Zhejiang University, Hangzhou 310058, China
| | - Yaqin Wang
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Zhongkai Zhang
- Institute of Biotechnology and Genetic Resources, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan 650223, China
| | - Jian Hong
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China; Analysis Center of Agrobiology and Environmental Sciences, Zhejiang University, Hangzhou 310058, China
| | - Zhenghe Li
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China; Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insect Pests, Zhejiang University, Hangzhou 310058, China.
| | - Li Xie
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China; Analysis Center of Agrobiology and Environmental Sciences, Zhejiang University, Hangzhou 310058, China.
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22
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Jeyaraj PR, Nadar ERS. Medical image annotation and classification employing pyramidal feature specific lightweight deep convolution neural network. COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING: IMAGING & VISUALIZATION 2023. [DOI: 10.1080/21681163.2023.2179341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
Affiliation(s)
- Pandia Rajan Jeyaraj
- Department of Electrical and Electronics Engineering, Mepco Schlenk Engineering College, Sivakasi, India
| | - Edward Rajan Samuel Nadar
- Department of Electrical and Electronics Engineering, Mepco Schlenk Engineering College, Sivakasi, India
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23
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Songara A, Dhiman P, Sharma V, Kumar K. A Supervised Learning-Based Framework for Predicting COVID-19 in Patients. INTERNATIONAL JOURNAL OF DISTRIBUTED SYSTEMS AND TECHNOLOGIES 2023. [DOI: 10.4018/ijdst.317412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
Abstract
The integration of ML and loT can provide insightful details for critical decision making, automated responses, etc. Predicting future trends and detecting anomalies are some of the areas where loT and ML are being used at a rapid rate. Machine learning can help decode the hidden patterns in IoT data. It may complement or replace manual processes in critical areas with automated systems that use statistically derived behavior. In healthcare, wearable sensors used for tracking patient activity have been continuously producing a staggering amount of data. This paper proposes an IoT-based scalable architecture for detecting COVID-19-positive patients and storing and processing such massive amount of data on the cloud. The proposed architecture also employs machine learning algorithms for correct classification of patients. The proposed architecture employs gradient boosting classifier method for early detection of COVID-19 in the patient's body. In order to make the architecture scalable and faster in terms of computational power, the architecture employs cloud computing for data storage.
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Affiliation(s)
| | | | - Vipul Sharma
- Jaypee University of Information Technology, India
| | - Karan Kumar
- M.M. Engineering College, Maharishi Markandeshwar (Deemed University), Mullana, India
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24
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Atasever S, Azginoglu N, Terzi DS, Terzi R. A comprehensive survey of deep learning research on medical image analysis with focus on transfer learning. Clin Imaging 2023; 94:18-41. [PMID: 36462229 DOI: 10.1016/j.clinimag.2022.11.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 10/17/2022] [Accepted: 11/01/2022] [Indexed: 11/13/2022]
Abstract
This survey aims to identify commonly used methods, datasets, future trends, knowledge gaps, constraints, and limitations in the field to provide an overview of current solutions used in medical image analysis in parallel with the rapid developments in transfer learning (TL). Unlike previous studies, this survey grouped the last five years of current studies for the period between January 2017 and February 2021 according to different anatomical regions and detailed the modality, medical task, TL method, source data, target data, and public or private datasets used in medical imaging. Also, it provides readers with detailed information on technical challenges, opportunities, and future research trends. In this way, an overview of recent developments is provided to help researchers to select the most effective and efficient methods and access widely used and publicly available medical datasets, research gaps, and limitations of the available literature.
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Affiliation(s)
- Sema Atasever
- Computer Engineering Department, Nevsehir Hacı Bektas Veli University, Nevsehir, Turkey.
| | - Nuh Azginoglu
- Computer Engineering Department, Kayseri University, Kayseri, Turkey.
| | | | - Ramazan Terzi
- Computer Engineering Department, Amasya University, Amasya, Turkey.
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25
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Modak S, Abdel-Raheem E, Rueda L. Applications of Deep Learning in Disease Diagnosis of Chest Radiographs: A Survey on Materials and Methods. BIOMEDICAL ENGINEERING ADVANCES 2023. [DOI: 10.1016/j.bea.2023.100076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
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26
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Zeng Y, Xu X. Label Diffusion Graph Learning network for semi-supervised breast histological image recognition. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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27
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Khan A, Khan SH, Saif M, Batool A, Sohail A, Waleed Khan M. A Survey of Deep Learning Techniques for the Analysis of COVID-19 and their usability for Detecting Omicron. J EXP THEOR ARTIF IN 2023. [DOI: 10.1080/0952813x.2023.2165724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Asifullah Khan
- Pattern Recognition Lab, Department of Computer & Information Sciences, Pakistan Institute of Engineering & Applied Sciences, Nilore, Islamabad, Pakistan
- PIEAS Artificial Intelligence Center (PAIC), Pakistan Institute of Engineering & Applied Sciences, Islamabad, Pakistan
- Center for Mathematical Sciences, Pakistan Institute of Engineering & Applied Sciences, Islamabad, Pakistan
| | - Saddam Hussain Khan
- Pattern Recognition Lab, Department of Computer & Information Sciences, Pakistan Institute of Engineering & Applied Sciences, Nilore, Islamabad, Pakistan
- Department of Computer Systems Engineering, University of Engineering and Applied Sciences (UEAS), Swat, Pakistan
| | - Mahrukh Saif
- Pattern Recognition Lab, Department of Computer & Information Sciences, Pakistan Institute of Engineering & Applied Sciences, Nilore, Islamabad, Pakistan
| | - Asiya Batool
- Pattern Recognition Lab, Department of Computer & Information Sciences, Pakistan Institute of Engineering & Applied Sciences, Nilore, Islamabad, Pakistan
| | - Anabia Sohail
- Pattern Recognition Lab, Department of Computer & Information Sciences, Pakistan Institute of Engineering & Applied Sciences, Nilore, Islamabad, Pakistan
- Department of Computer Science, Faculty of Computing & Artificial Intelligence, Air University, Islamabad, Pakistan
| | - Muhammad Waleed Khan
- Pattern Recognition Lab, Department of Computer & Information Sciences, Pakistan Institute of Engineering & Applied Sciences, Nilore, Islamabad, Pakistan
- Department of Mechanical and Aerospace Engineering, Columbus, OH, USA
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Hasan MM, Islam MU, Sadeq MJ, Fung WK, Uddin J. Review on the Evaluation and Development of Artificial Intelligence for COVID-19 Containment. SENSORS (BASEL, SWITZERLAND) 2023; 23:527. [PMID: 36617124 PMCID: PMC9824505 DOI: 10.3390/s23010527] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 12/23/2022] [Accepted: 12/29/2022] [Indexed: 06/17/2023]
Abstract
Artificial intelligence has significantly enhanced the research paradigm and spectrum with a substantiated promise of continuous applicability in the real world domain. Artificial intelligence, the driving force of the current technological revolution, has been used in many frontiers, including education, security, gaming, finance, robotics, autonomous systems, entertainment, and most importantly the healthcare sector. With the rise of the COVID-19 pandemic, several prediction and detection methods using artificial intelligence have been employed to understand, forecast, handle, and curtail the ensuing threats. In this study, the most recent related publications, methodologies and medical reports were investigated with the purpose of studying artificial intelligence's role in the pandemic. This study presents a comprehensive review of artificial intelligence with specific attention to machine learning, deep learning, image processing, object detection, image segmentation, and few-shot learning studies that were utilized in several tasks related to COVID-19. In particular, genetic analysis, medical image analysis, clinical data analysis, sound analysis, biomedical data classification, socio-demographic data analysis, anomaly detection, health monitoring, personal protective equipment (PPE) observation, social control, and COVID-19 patients' mortality risk approaches were used in this study to forecast the threatening factors of COVID-19. This study demonstrates that artificial-intelligence-based algorithms integrated into Internet of Things wearable devices were quite effective and efficient in COVID-19 detection and forecasting insights which were actionable through wide usage. The results produced by the study prove that artificial intelligence is a promising arena of research that can be applied for disease prognosis, disease forecasting, drug discovery, and to the development of the healthcare sector on a global scale. We prove that artificial intelligence indeed played a significantly important role in helping to fight against COVID-19, and the insightful knowledge provided here could be extremely beneficial for practitioners and research experts in the healthcare domain to implement the artificial-intelligence-based systems in curbing the next pandemic or healthcare disaster.
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Affiliation(s)
- Md. Mahadi Hasan
- Department of Computer Science and Engineering, Asian University of Bangladesh, Ashulia 1349, Bangladesh
| | - Muhammad Usama Islam
- School of Computing and Informatics, University of Louisiana at Lafayette, Lafayette, LA 70504, USA
| | - Muhammad Jafar Sadeq
- Department of Computer Science and Engineering, Asian University of Bangladesh, Ashulia 1349, Bangladesh
| | - Wai-Keung Fung
- Department of Applied Computing and Engineering, Cardiff School of Technologies, Cardiff Metropolitan University, Cardiff CF5 2YB, UK
| | - Jasim Uddin
- Department of Applied Computing and Engineering, Cardiff School of Technologies, Cardiff Metropolitan University, Cardiff CF5 2YB, UK
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Prediction of the COVID-19 infectivity and the sustainable impact on public health under deep learning algorithm. Soft comput 2023; 27:2695-2704. [PMID: 34456617 PMCID: PMC8380005 DOI: 10.1007/s00500-021-06142-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/10/2021] [Indexed: 10/24/2022]
Abstract
The aim is to explore the development trend of COVID-19 (Corona Virus Disease 2019) and predict the infectivity of 2019-nCoV (2019 Novel Coronavirus), as well as its impact on public health. First, the existing data are analyzed through data pre-processing to extract useful feature factors. Then, the LSTM (Long-Short Term Memory) prediction model in the deep learning algorithm is used to predict the epidemic situation in Hubei Province, outside Hubei nationwide, and the whole country, respectively. Meanwhile, the impact of intervention time changes on the epidemic situation is compared. The results show that the prediction results are almost consistent with the actual values. Specifically, Hubei Province abolishes quarantine restrictions after the Spring Festival holiday, and the first COVID-19 peak is reached in late February, while the second COVID-19 peak has been reached in early March. Finally, the cumulative number of diagnoses reaches 85,000 cases, with an increase of 15,000 cases compared with the nationwide cases outside Hubei under the continuous implementation of prevention and control measures. Under the prediction of the proposed LSTM model, if the nationwide implementation of prevention and control interventions is postponed by 5 days, the epidemic will peak in early March, and the cumulative number of diagnoses will be about 200,000; and if the intervention measures are implemented five days earlier, the epidemic will peak in mid-February, with a cumulative number of diagnoses of approximately 40,000. Meanwhile, the proposed LSTM model predicts the RMSE values of the epidemic situation in Hubei Province, outside Hubei nationwide, and the whole country as 34.63, 75.42, and 50.27, respectively. Under model comparison analysis, the prediction error of the proposed LSTM model is small and has better applicability over similar algorithms. The results show that the LSTM model is effective and has high performance in infectious disease prediction, and the research results can provide scientific and effective references for subsequent related research.
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Diwan T, Anirudh G, Tembhurne JV. Object detection using YOLO: challenges, architectural successors, datasets and applications. MULTIMEDIA TOOLS AND APPLICATIONS 2023; 82:9243-9275. [PMID: 35968414 PMCID: PMC9358372 DOI: 10.1007/s11042-022-13644-y] [Citation(s) in RCA: 23] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Revised: 03/14/2022] [Accepted: 08/02/2022] [Indexed: 05/05/2023]
Abstract
Object detection is one of the predominant and challenging problems in computer vision. Over the decade, with the expeditious evolution of deep learning, researchers have extensively experimented and contributed in the performance enhancement of object detection and related tasks such as object classification, localization, and segmentation using underlying deep models. Broadly, object detectors are classified into two categories viz. two stage and single stage object detectors. Two stage detectors mainly focus on selective region proposals strategy via complex architecture; however, single stage detectors focus on all the spatial region proposals for the possible detection of objects via relatively simpler architecture in one shot. Performance of any object detector is evaluated through detection accuracy and inference time. Generally, the detection accuracy of two stage detectors outperforms single stage object detectors. However, the inference time of single stage detectors is better compared to its counterparts. Moreover, with the advent of YOLO (You Only Look Once) and its architectural successors, the detection accuracy is improving significantly and sometime it is better than two stage detectors. YOLOs are adopted in various applications majorly due to their faster inferences rather than considering detection accuracy. As an example, detection accuracies are 63.4 and 70 for YOLO and Fast-RCNN respectively, however, inference time is around 300 times faster in case of YOLO. In this paper, we present a comprehensive review of single stage object detectors specially YOLOs, regression formulation, their architecture advancements, and performance statistics. Moreover, we summarize the comparative illustration between two stage and single stage object detectors, among different versions of YOLOs, applications based on two stage detectors, and different versions of YOLOs along with the future research directions.
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Affiliation(s)
- Tausif Diwan
- Department of Computer Science & Engineering, Indian Institute of Information Technology, Nagpur, India
| | - G. Anirudh
- Department of Data science and analytics, Central University of Rajasthan, Jaipur, Rajasthan India
| | - Jitendra V. Tembhurne
- Department of Computer Science & Engineering, Indian Institute of Information Technology, Nagpur, India
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Saleem K, Saleem M, Ahmad RZ, Javed AR, Alazab M, Gadekallu TR, Suleman A. Situation-Aware BDI Reasoning to Detect Early Symptoms of Covid 19 Using Smartwatch. IEEE SENSORS JOURNAL 2023; 23:898-905. [PMID: 36913222 PMCID: PMC9983688 DOI: 10.1109/jsen.2022.3156819] [Citation(s) in RCA: 20] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 02/28/2022] [Indexed: 05/09/2023]
Abstract
Ambient intelligence plays a crucial role in healthcare situations. It provides a certain way to deal with emergencies to provide the essential resources such as nearest hospitals and emergency stations promptly to avoid deaths. Since the outbreak of Covid-19, several artificial intelligence techniques have been used. However, situation awareness is a key aspect to handling any pandemic situation. The situation-awareness approach gives patients a routine life where they are continuously monitored by caregivers through wearable sensors and alert the practitioners in case of any patient emergency. Therefore, in this paper, we propose a situation-aware mechanism to detect Covid-19 systems early and alert the user to be self-aware regarding the situation to take precautions if the situation seems unlikely to be normal. We provide Belief-Desire-Intention intelligent reasoning mechanism for the system to analyze the situation after acquiring the data from the wearable sensors and alert the user according to their environment. We use the case study for further demonstration of our proposed framework. We model the proposed system by temporal logic and map the system illustration into a simulation tool called NetLogo to determine the results of the proposed system.
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Affiliation(s)
- Kiran Saleem
- School of SoftwareDalian University of TechnologyDalian116024China
| | - Misbah Saleem
- Institute of Diet and Nutritional Science, University of LahoreLahore54590Pakistan
| | | | | | - Mamoun Alazab
- College of EngineeringIT and Environment, Charles Darwin UniversityDarwinNT0815Australia
| | | | - Ahmad Suleman
- Center of Excellence in Solid State PhysicsUniversity of PunjabLahore05422Pakistan
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Kao CL, Chien LC, Wang MC, Tang JS, Huang PC, Chuang CC, Shih CL. The development of new remote technologies in disaster medicine education: A scoping review. Front Public Health 2023; 11:1029558. [PMID: 37033011 PMCID: PMC10080133 DOI: 10.3389/fpubh.2023.1029558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2022] [Accepted: 02/27/2023] [Indexed: 04/11/2023] Open
Abstract
Background Remote teaching and online learning have significantly changed the responsiveness and accessibility after the COVID-19 pandemic. Disaster medicine (DM) has recently gained prominence as a critical issue due to the high frequency of worldwide disasters, especially in 2021. The new artificial intelligence (AI)-enhanced technologies and concepts have recently progressed in DM education. Objectives The aim of this article is to familiarize the reader with the remote technologies that have been developed and used in DM education over the past 20 years. Literature scoping reviews Mobile edge computing (MEC), unmanned aerial vehicles (UAVs)/drones, deep learning (DL), and visual reality stimulation, e.g., head-mounted display (HMD), are selected as promising and inspiring designs in DM education. Methods We performed a comprehensive review of the literature on the remote technologies applied in DM pedagogy for medical, nursing, and social work, as well as other health discipline students, e.g., paramedics. Databases including PubMed (MEDLINE), ISI Web of Science (WOS), EBSCO (EBSCO Essentials), Embase (EMB), and Scopus were used. The sourced results were recorded in a Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) flowchart and followed in accordance with the PRISMA extension Scoping Review checklist. We included peer-reviewed articles, Epubs (electronic publications such as databases), and proceedings written in English. VOSviewer for related keywords extracted from review articles presented as a tabular summary to demonstrate their occurrence and connections among these DM education articles from 2000 to 2022. Results A total of 1,080 research articles on remote technologies in DM were initially reviewed. After exclusion, 64 articles were included in our review. Emergency remote teaching/learning education, remote learning, online learning/teaching, and blended learning are the most frequently used keywords. As new remote technologies used in emergencies become more advanced, DM pedagogy is facing more complex problems. Discussions Artificial intelligence-enhanced remote technologies promote learning incentives for medical undergraduate students or graduate professionals, but the efficacy of learning quality remains uncertain. More blended AI-modulating pedagogies in DM education could be increasingly important in the future. More sophisticated evaluation and assessment are needed to implement carefully considered designs for effective DM education.
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Affiliation(s)
- Chia-Lung Kao
- Department of Emergency Medicine, National Cheng Kung University Hospital, College of Medicine, National Cheng Kung University, Tainan, Taiwan
- Regional Emergency Medical Operations Center-Tainan Branch, Ministry of Health and Welfare, Taipei City, Taiwan
| | - Li-Chien Chien
- Department of Emergency Medicine, National Cheng Kung University Hospital, College of Medicine, National Cheng Kung University, Tainan, Taiwan
- Regional Emergency Medical Operations Center-Tainan Branch, Ministry of Health and Welfare, Taipei City, Taiwan
| | - Mei-Chin Wang
- Department of Nursing, Chung Hwa University of Medical Technology, Tainan, Taiwan
| | - Jing-Shia Tang
- Department of Nursing, Chung Hwa University of Medical Technology, Tainan, Taiwan
| | - Po-Chang Huang
- Department of Emergency Medicine, National Cheng Kung University Hospital, College of Medicine, National Cheng Kung University, Tainan, Taiwan
| | - Chia-Chang Chuang
- Department of Emergency Medicine, National Cheng Kung University Hospital, College of Medicine, National Cheng Kung University, Tainan, Taiwan
- Regional Emergency Medical Operations Center-Tainan Branch, Ministry of Health and Welfare, Taipei City, Taiwan
- *Correspondence: Chia-Chang Chuang
| | - Chung-Liang Shih
- Department of Medical Affairs, Ministry of Health and Welfare, Taipei City, Taiwan
- Department of Emergency Medicine, College of Medicine, National Taiwan University, Taipei City, Taiwan
- Chung-Liang Shih
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Ali MH, Jaber MM, Abd SK, Alkhayyat A, Jasim AD. Artificial Neural Network-Based Medical Diagnostics and Therapeutics. INT J PATTERN RECOGN 2022; 36. [DOI: 10.1142/s0218001422400079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
Abstract
The advancement of healthcare technology is impossible without machine learning (ML). There have been numerous advances in ML to analyze, predict, and diagnose medical data. Integrating a centralized scheme and therapy for classifying and diagnosing illnesses and disorders is a major obstacle in modern healthcare. To standardize all medical data into a single repository, researchers have proposed using ML using the centralized artificial neural network model (ML-CANNM). Random tree, support vector machine, and gradient booster are just a few proposed ML classifiers. Artificial neural networks (ANNs) have been trained using a variety of medical datasets to predict and analyze outcomes. ML-CANNM collects patient data from various studies and uses ML and ANNs to determine the results. Three layers make up an ANN. ML is used to classify the given patients’ data in the input layer. In the hidden layer, classification data are compared to a training dataset. The output layer’s job is to identify, classify, and diagnose diseases. As a result, disease diagnosis and detection are integrated into a single healthcare database. The proposed framework has proven that ML-CANNM works with more accuracy and lesser execution time. Thus, the numerical outcome suggested ML-CANNM increased accuracy ratio of 99.2% and a prediction ratio of 97.5%. The findings further show that the execution time is enhanced by less than 2[Formula: see text]h, decision table using ML and results in an efficiency ratio of 97.5%.
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Affiliation(s)
- Mohammed Hasan Ali
- Computer Techniques Engineering Department, Faculty of Information Technology, Imam Ja’afar Al-Sadiq University, Najaf 10023, Iraq
| | - Mustafa Musa Jaber
- Department of Computer Science, Al-Turath University College, Baghdad, Iraq
- Department of Medical Instruments Engineering Techniques, Al-Farahidi University, Baghdad, Iraq
| | - Sura Khalil Abd
- Department of Computer Science, Dijlah University College, Baghdad 10021, Iraq
| | - Ahmed Alkhayyat
- Department of Computer Engineering Techniques, College of Technical Engineering, The Islamic University, Najaf, Iraq
| | - Abdali Dakhil Jasim
- English Language Department, Al-Mustaqbal University College, Hillah 51001, Iraq
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Preliminary Stages for COVID-19 Detection Using Image Processing. Diagnostics (Basel) 2022; 12:diagnostics12123171. [PMID: 36553177 PMCID: PMC9777505 DOI: 10.3390/diagnostics12123171] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Revised: 11/30/2022] [Accepted: 12/08/2022] [Indexed: 12/23/2022] Open
Abstract
COVID-19 was first discovered in December 2019 in Wuhan. There have been reports of thousands of illnesses and hundreds of deaths in almost every region of the world. Medical images, when combined with cutting-edge technology such as artificial intelligence, have the potential to improve the efficiency of the public health system and deliver faster and more reliable findings in the detection of COVID-19. The process of developing the COVID-19 diagnostic system begins with image accusation and proceeds via preprocessing, feature extraction, and classification. According to literature review, several attempts to develop taxonomies for COVID-19 detection using image processing methods have been introduced. However, most of these adhere to a standard category that exclusively considers classification methods. Therefore, in this study a new taxonomy for the early stages of COVID-19 detection is proposed. It attempts to offer a full grasp of image processing in COVID-19 while considering all phases required prior to classification. The survey concludes with a discussion of outstanding concerns and future directions.
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Lasker A, Obaidullah SM, Chakraborty C, Roy K. Application of Machine Learning and Deep Learning Techniques for COVID-19 Screening Using Radiological Imaging: A Comprehensive Review. SN COMPUTER SCIENCE 2022; 4:65. [PMID: 36467853 PMCID: PMC9702883 DOI: 10.1007/s42979-022-01464-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Accepted: 10/18/2022] [Indexed: 11/26/2022]
Abstract
Lung, being one of the most important organs in human body, is often affected by various SARS diseases, among which COVID-19 has been found to be the most fatal disease in recent times. In fact, SARS-COVID 19 led to pandemic that spreads fast among the community causing respiratory problems. Under such situation, radiological imaging-based screening [mostly chest X-ray and computer tomography (CT) modalities] has been performed for rapid screening of the disease as it is a non-invasive approach. Due to scarcity of physician/chest specialist/expert doctors, technology-enabled disease screening techniques have been developed by several researchers with the help of artificial intelligence and machine learning (AI/ML). It can be remarkably observed that the researchers have introduced several AI/ML/DL (deep learning) algorithms for computer-assisted detection of COVID-19 using chest X-ray and CT images. In this paper, a comprehensive review has been conducted to summarize the works related to applications of AI/ML/DL for diagnostic prediction of COVID-19, mainly using X-ray and CT images. Following the PRISMA guidelines, total 265 articles have been selected out of 1715 published articles till the third quarter of 2021. Furthermore, this review summarizes and compares varieties of ML/DL techniques, various datasets, and their results using X-ray and CT imaging. A detailed discussion has been made on the novelty of the published works, along with advantages and limitations.
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Affiliation(s)
- Asifuzzaman Lasker
- Department of Computer Science & Engineering, Aliah University, Kolkata, India
| | - Sk Md Obaidullah
- Department of Computer Science & Engineering, Aliah University, Kolkata, India
| | - Chandan Chakraborty
- Department of Computer Science & Engineering, National Institute of Technical Teachers’ Training & Research Kolkata, Kolkata, India
| | - Kaushik Roy
- Department of Computer Science, West Bengal State University, Barasat, India
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36
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Hassan MM, AlQahtani SA, Alelaiwi A, Papa JP. Explaining COVID-19 diagnosis with Taylor decompositions. Neural Comput Appl 2022; 35:1-14. [PMID: 36415284 PMCID: PMC9672580 DOI: 10.1007/s00521-022-08021-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2022] [Accepted: 10/26/2022] [Indexed: 11/19/2022]
Abstract
The COVID-19 pandemic has devastated the entire globe since its first appearance at the end of 2019. Although vaccines are now in production, the number of contaminations remains high, thus increasing the number of specialized personnel that can analyze clinical exams and points out the final diagnosis. Computed tomography and X-ray images are the primary sources for computer-aided COVID-19 diagnosis, but we still lack better interpretability of such automated decision-making mechanisms. This manuscript presents an insightful comparison of three approaches based on explainable artificial intelligence (XAI) to light up interpretability in the context of COVID-19 diagnosis using deep networks: Composite Layer-wise Propagation, Single Taylor Decomposition, and Deep Taylor Decomposition. Two deep networks have been used as the backbones to assess the explanation skills of the XAI approaches mentioned above: VGG11 and VGG16. We hope that such work can be used as a basis for further research on XAI and COVID-19 diagnosis for each approach figures its own positive and negative points.
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Affiliation(s)
- Mohammad Mehedi Hassan
- College of Computer and Information Sciences, King Saud University, Riyadh, 11543 Saudi Arabia
| | - Salman A. AlQahtani
- College of Computer and Information Sciences, King Saud University, Riyadh, 11543 Saudi Arabia
| | - Abdulhameed Alelaiwi
- College of Computer and Information Sciences, King Saud University, Riyadh, 11543 Saudi Arabia
| | - João P. Papa
- Department of Computing, São Paulo State University, Bauru, Brazil
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Kamnardsiri T, Charoenkwan P, Malang C, Wudhikarn R. 1D Barcode Detection: Novel Benchmark Datasets and Comprehensive Comparison of Deep Convolutional Neural Network Approaches. SENSORS (BASEL, SWITZERLAND) 2022; 22:8788. [PMID: 36433385 PMCID: PMC9696533 DOI: 10.3390/s22228788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 11/09/2022] [Accepted: 11/10/2022] [Indexed: 06/16/2023]
Abstract
Recent advancement in Deep Learning-based Convolutional Neural Networks (D-CNNs) has led research to improve the efficiency and performance of barcode recognition in Supply Chain Management (SCM). D-CNNs required real-world images embedded with ground truth data, which is often not readily available in the case of SCM barcode recognition. This study introduces two invented barcode datasets: InventBar and ParcelBar. The datasets contain labeled barcode images with 527 consumer goods and 844 post boxes in the indoor environment. To explore the influential capability of the datasets that affect recognition process, five existing D-CNN algorithms were applied and compared over a set of recently available barcode datasets. To confirm the model's performance and accuracy, runtime and Mean Average Precision (mAP) were examined based on different IoU thresholds and image transformation settings. The results show that YOLO v5 works best for the ParcelBar in terms of speed and accuracy. The situation is different for the InventBar since Faster R-CNN could allow the model to learn faster with a small drop in accuracy. It is proven that the proposed datasets can be practically utilized for the mainstream D-CNN frameworks. Both are available for developing barcode recognition models and positively affect comparative studies.
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Affiliation(s)
- Teerawat Kamnardsiri
- Department of Digital Game, College of Arts, Media and Technology, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Phasit Charoenkwan
- Department of Modern Management and Information Technology, College of Arts, Media and Technology, Chiang Mai University, Chiang Mai 50200, Thailand
- A Research Group of Modern Management and Information Technology, College of Arts, Media and Technology, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Chommaphat Malang
- Department of Digital Industry Integration, College of Arts, Media and Technology, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Ratapol Wudhikarn
- A Research Group of Modern Management and Information Technology, College of Arts, Media and Technology, Chiang Mai University, Chiang Mai 50200, Thailand
- Department of Knowledge and Innovation Management, College of Arts, Media and Technology, Chiang Mai University, Chiang Mai 50200, Thailand
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Er MB. COVID-19 detection based on pre-trained deep networks and LSTM model using X-ray images enhanced contrast with artificial bee colony algorithm. EXPERT SYSTEMS 2022; 40:e13185. [PMID: 36718212 PMCID: PMC9878115 DOI: 10.1111/exsy.13185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Revised: 09/14/2022] [Accepted: 10/20/2022] [Indexed: 06/18/2023]
Abstract
Coronavirus (COVID-19) is an infectious disease that has spread across the world within a short period of time and is causing rapid casualties. The main symptoms of this virus are shortness of breath, fever, cough, and a sore throat. The virus is detected through samples, such as throat swabs and sputum, taken from people who meet the possible case definition and the results are usually obtained within a few hours or a day. The development of test kits to detect the COVID-19 virus is still an open research topic, and automated and faster diagnostic tools are needed. Recent studies have shown that biomedical images can be used for COVID-19 testing. This study proposes the hybrid use of pre-trained deep networks and the long short-term memory (LSTM) for the classification of COVID-19 from contrast-enhanced chest X-rays. In the proposed system, a transformation function is applied to X-ray images first. Then, the artificial bee colony (ABC) algorithm is used to optimize the parameters obtained from the transformation function. The pre-trained deep network models and LSTM are preferred to extract features from the contrast-enhanced chest X-rays. At the final stage, COVID-19, normal (healthy), and pneumonia chest X-ray are classified using softmax. To evaluate the performance of the proposed method, the "COVID-19 radiography" dataset, which is widely used in the literature, is preferred. From the proposed model, 98.97% accuracy, 98.80% precision, and 98.70% sensitivity rates are obtained. Experimental results reveal that the proposed model provides efficient results compared to other methods. Thanks to the application of ABC-based image enhancement, increased classification of 2.5% has been achieved against other state-of-the-art models.
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Affiliation(s)
- Mehmet Bilal Er
- Department of Computer Engineering, Faculty of EngineeringHarran UniversityŞanlıurfaTurkey
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39
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Nallakaruppan MK, Ramalingam S, Somayaji SRK, Prathiba SB. Comparative Analysis of Deep Learning Models Used in Impact Analysis of Coronavirus Chest X-ray Imaging. Biomedicines 2022; 10:2791. [PMID: 36359310 PMCID: PMC9687278 DOI: 10.3390/biomedicines10112791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 10/19/2022] [Accepted: 10/22/2022] [Indexed: 11/06/2022] Open
Abstract
The impact analysis of deep learning models for COVID-19-infected X-ray images is an extremely challenging task. Every model has unique capabilities that can provide suitable solutions for some given problem. The prescribed work analyzes various deep learning models that are used for capturing the chest X-ray images. Their performance-defining factors, such as accuracy, f1-score, training and the validation loss, are tested with the support of the training dataset. These deep learning models are multi-layered architectures. These parameters fluctuate based on the behavior of these layers, learning rate, training efficiency, or over-fitting of models. This may in turn introduce sudden changes in the values of training accuracy, testing accuracy, loss or validation loss, f1-score, etc. Some models produce linear responses with respect to the training and testing data, such as Xception, but most of the models provide a variation of these parameters either in the accuracy or the loss functions. The prescribed work performs detailed experimental analysis of deep learning image neural network models and compares them with the above said parameters with detailed analysis of these parameters with their responses regarding accuracy and loss functions. This work also analyses the suitability of these model based on the various parameters, such as the accuracy and loss functions to various applications. This prescribed work also lists out various challenges on the implementation and experimentation of these models. Solutions are provided for enhancing the performance of these deep learning models. The deep learning models that are used in the prescribed work are Resnet, VGG16, Resnet with VGG, Inception V3, Xception with transfer learning, and CNN. The model is trained with more than 1500 images of the chest-X-ray data and tested with around 132 samples of the X-ray image dataset. The prescribed work analyzes the accuracy, f1-score, recall, and precision of these models and analyzes these parameters. It also measures parameters such as training accuracy, testing accuracy, loss, and validation loss. Each epoch of every model is recorded to measure the changes in these parameters during the experimental analysis. The prescribed work provides insight for future research through various challenges and research findings with future directions.
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Affiliation(s)
| | - Subhashini Ramalingam
- School of Information Technology and Engineering, Vellore Institute of Technology, Vellore 632014, India
| | | | - Sahaya Beni Prathiba
- School of Computer Science and Engineering, Vellore Institute of Technology, Chennai 600127, India
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Ahila T, Subhajini AC. E-GCS: Detection of COVID-19 through classification by attention bottleneck residual network. ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE 2022; 116:105398. [PMID: 36158870 PMCID: PMC9485443 DOI: 10.1016/j.engappai.2022.105398] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Revised: 06/30/2022] [Accepted: 08/26/2022] [Indexed: 06/16/2023]
Abstract
Background Recently, the coronavirus disease 2019 (COVID-19) has caused mortality of many people globally. Thus, there existed a need to detect this disease to prevent its further spread. Hence, the study aims to predict COVID-19 infected patients based on deep learning (DL) and image processing. Objectives The study intends to classify the normal and abnormal cases of COVID-19 by considering three different medical imaging modalities namely ultrasound imaging, X-ray images and CT scan images through introduced attention bottleneck residual network (AB-ResNet). It also aims to segment the abnormal infected area from normal images for localizing localising the disease infected area through the proposed edge based graph cut segmentation (E-GCS). Methodology AB-ResNet is used for classifying images whereas E-GCS segment the abnormal images. The study possess various advantages as it rely on DL and possess capability for accelerating the training speed of deep networks. It also enhance the network depth leading to minimum parameters, minimising the impact of vanishing gradient issue and attaining effective network performance with respect to better accuracy. Results/Conclusion Performance and comparative analysis is undertaken to evaluate the efficiency of the introduced system and results explores the efficiency of the proposed system in COVID-19 detection with high accuracy (99%).
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Affiliation(s)
- T Ahila
- Department of Computer Applications, Noorul Islam Centre For Higher Education, Kumaracoil, 629180, India
| | - A C Subhajini
- Department of Computer Applications, Noorul Islam Centre For Higher Education, Kumaracoil, 629180, India
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Reema G, Vijaya Babu B, Tumuluru P, Praveen SP. COVID-19 EDA analysis and prediction using SIR and SEIR models. INTERNATIONAL JOURNAL OF HEALTHCARE MANAGEMENT 2022. [DOI: 10.1080/20479700.2022.2130630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
Affiliation(s)
- Gunti Reema
- Department of Computer Science and Engineering, KoneruLakshmaiah Education Foundation, KL University, Vaddeswaram, Andhra Pradesh, India
| | - B. Vijaya Babu
- Department of Computer Science and Engineering, KoneruLakshmaiah Education Foundation, KL University, Vaddeswaram, Andhra Pradesh, India
| | - Praveen Tumuluru
- Department of Computer Science and Engineering, KoneruLakshmaiah Education Foundation, KL University, Vaddeswaram, Andhra Pradesh, India
| | - S. Phani Praveen
- Department of Computer Science and Engineering, Prasad V. Potluri Siddhartha Institute of Technology, Jawaharlal Nehru Technological University Kakinada, Kakinada, Andhra Pradesh, India
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42
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Lee W, Kim JH, Lee S, Kim K, Kang TS, Han YS. Estimation of best corrected visual acuity based on deep neural network. Sci Rep 2022; 12:17808. [PMID: 36280678 PMCID: PMC9589880 DOI: 10.1038/s41598-022-22586-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Accepted: 10/17/2022] [Indexed: 01/19/2023] Open
Abstract
In this study, we investigated a convolutional neural network (CNN)-based framework for the estimation of the best-corrected visual acuity (BCVA) from fundus images. First, we collected 53,318 fundus photographs from the Gyeongsang National University Changwon Hospital, where each fundus photograph is categorized into 11 levels by retrospective medical chart review. Then, we designed 4 BCVA estimation schemes using transfer learning with pre-trained ResNet-18 and EfficientNet-B0 models where both regression and classification-based prediction are taken into account. According to the results of the study, the predicted BCVA by CNN-based schemes is close to the actual value such that 94.37% of prediction accuracy can be achieved when 3 levels of difference can be tolerated during prediction. The mean squared error and [Formula: see text] score were measured as 0.028 and 0.654, respectively. These results indicate that the BCVA can be predicted accurately for extreme cases, i.e., the level of BCVA is close to either 0.0 or 1.0. Moreover, using the Guided Grad-CAM, we confirmed that the macula and the blood vessel surrounding the macula are mainly utilized in the prediction of BCVA, which validates the rationality of the CNN-based BCVA estimation schemes since the same area is also exploited during the retrospective medical chart review. Finally, we applied the t-distributed stochastic neighbor embedding to examine the characteristics of CNN-based BCVA estimation schemes. The developed BCVA estimation schemes can be employed to obtain the objective measurement of BVCA as well as the medical screening of people with poor access to medical care through smartphone-based fundus imaging.
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Affiliation(s)
- Woongsup Lee
- Department of Information and Communication Engineering, Gyeongsang National University, Tongyeong, Republic of Korea
| | - Jin Hyun Kim
- Department of Information and Communication Engineering, Gyeongsang National University, Tongyeong, Republic of Korea.
| | - Seongjin Lee
- Department of AI Convergence Engineering, Gyeongsang National University, Jinju, Republic of Korea
| | - Kyonghoon Kim
- School of Computer Science and Engineering, Kyungpook National University, Daegu, Republic of Korea
| | - Tae Seen Kang
- Department of Ophthalmology, Gyeongsang National University Changwon Hospital, #11 Samjeongja-ro, Seongsan-gu, Changwon, 51472, Republic of Korea
| | - Yong Seop Han
- Department of Ophthalmology, Gyeongsang National University Changwon Hospital, #11 Samjeongja-ro, Seongsan-gu, Changwon, 51472, Republic of Korea.
- Department of Ophthalmology, Gyeongsang National University College of Medicine, Institute of Health Sciences, Jinju, Republic of Korea.
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Defending against adversarial attacks on Covid-19 classifier: A denoiser-based approach. Heliyon 2022; 8:e11209. [PMID: 36311356 PMCID: PMC9595496 DOI: 10.1016/j.heliyon.2022.e11209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Revised: 08/14/2022] [Accepted: 10/18/2022] [Indexed: 11/06/2022] Open
Abstract
Covid-19 has posed a serious threat to the existence of the human race. Early detection of the virus is vital to effectively containing the virus and treating the patients. Profound testing methods such as the Real-time reverse transcription-polymerase chain reaction (RT-PCR) test and the Rapid Antigen Test (RAT) are being used for detection, but they have their limitations. The need for early detection has led researchers to explore other testing techniques. Deep Neural Network (DNN) models have shown high potential in medical image classification and various models have been built by researchers which exhibit high accuracy for the task of Covid-19 detection using chest X-ray images. However, it is proven that DNNs are inherently susceptible to adversarial inputs, which can compromise the results of the models. In this paper, the adversarial robustness of such Covid-19 classifiers is evaluated by performing common adversarial attacks, which include the Fast Gradient Sign Method (FGSM) and Projected Gradient Descent (PGD). Using these attacks, it is found that the accuracy of the models for Covid-19 samples decreases drastically. In the medical domain, adversarial training is the most widely explored technique to defend against adversarial attacks. However, using this technique requires replacing the original model and retraining it by including adversarial samples. Another defensive technique, High-Level Representation Guided Denoiser (HGD), overcomes this limitation by employing an adversarial filter which is also transferable across models. Moreover, the HGD architecture, being suitable for high-resolution images, makes it a good candidate for medical image applications. In this paper, the HGD architecture has been evaluated as a potential defensive technique for the task of medical image analysis. Experiments carried out show an increased accuracy of up to 82% in the white box setting. However, in the black box setting, the defense completely fails to defend against adversarial samples. The current methods of testing for the virus are RT-PCR and RAT. These test results may take up to 24 h. Recent studies and research have shown that lung images show the presence or damage caused by the virus using machine learning techniques. Adversarial Attack is a major security threat in the domain of machine learning. Adversarial training is the most widely explored technique to defend against adversarial attacks. High-level representation Guided Denoiser (HGD) architecture, another defensive technique, being suitable for high-resolution images, makes it a good candidate for medical image applications. HGD architecture has been evaluated as a potential defensive technique for the task of medical image analysis with a new loss function. In a White box scenario considerable increase in accuracy is seen. However, in the black box setting, the defense fails to defend against adversarial samples.
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Noh JW, Kim KB, Jang HE, Heo MH, Kim YJ, Cha J. Non-Communicable Diseases and Transitioning Health System in the Democratic People’s Republic of Korea during COVID-19 Lockdown. Healthcare (Basel) 2022; 10:healthcare10102095. [PMID: 36292542 PMCID: PMC9602564 DOI: 10.3390/healthcare10102095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 10/17/2022] [Accepted: 10/18/2022] [Indexed: 11/16/2022] Open
Abstract
While there are increasing concerns on COVID-19 situation in Democratic People’s Republic of Korea (DPRK, or North Korea), little is known about North Korea’s health system function for Non-Communicable Diseases. Given the scarcity of available evidence, a scoping review was conducted in peer review articles from MEDLINE, SCOPUS, and Web of Science, and policy literatures from Rodongshinmun, state-run media in North Korea to analyze the North Korea health system and COVID-19 pandemic. The transition to a market economy is expected to deepen the gap between the rich and the poor over access to health care, causing a new type of health inequality in North Korea. COVID-19 lockdown intensified the DPRK’s economic predicament exacerbating shortage of health financing on non-communicable diseases. The case study of mixed evidence from scoping review indicates that NCDs prevention and management are not functional in the transitioning health system under chronic economic crisis and isolation. This study indicates that NCDs prevention and management are not functional in the transitioning health system under chronic economic crisis and isolation. The destabilized markets under COVID-19 lockdown intensified the DPRK’s economic predicament and exacerbated the chronic shortage of health financing especially to NCDs.
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Affiliation(s)
- Jin-Won Noh
- Division of Health Administration, College of Software and Digital Health Care Convergence, Yonsei University, Wonju 26493, Korea
| | - Kyoung-Beom Kim
- Industry-Academic Cooperation Foundation, Yonsei University, Wonju 26493, Korea
| | - Ha-Eun Jang
- Department of Health Care Management, College of Bio Convergence, Eulji University, Seongnam 34824, Korea
| | - Min-Hee Heo
- Department of Health Administration, Yonsei University Graduate School, Wonju 26493, Korea
| | - Young-Jin Kim
- Department of Health Administration, Dankook University, Cheonan 31116, Korea
| | - Jiho Cha
- Moonsoul Graduate School of Future Strategy, KAIST, Daejeon 34141, Korea
- Correspondence: ; Tel.: +82-42-350-4040
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Zhao L, Zhou D, Jin X, Zhu W. nn-TransUNet: An Automatic Deep Learning Pipeline for Heart MRI Segmentation. Life (Basel) 2022; 12:1570. [PMID: 36295005 PMCID: PMC9604839 DOI: 10.3390/life12101570] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 09/21/2022] [Accepted: 10/07/2022] [Indexed: 11/18/2022] Open
Abstract
Cardiovascular disease (CVD) is a disease with high mortality in modern times. The segmentation task for MRI to extract the related organs for CVD is essential for diagnosis. Currently, a large number of deep learning methods are designed for medical image segmentation tasks. However, the design of segmentation algorithms tends to have more focus on deepening the network architectures and tuning the parameters and hyperparameters manually, which not only leads to a high time and effort consumption, but also causes the problem that the architectures and setting designed for a single task only performs well in a single dataset, but have low performance in other cases. In this paper, nn-TransUNet, an automatic deep learning pipeline for MRI segmentation of the heart is proposed to combine the experiment planning of nnU-net and the network architecture of TransUNet. nn-TransUNet uses vision transformers and convolution layers in the design of the encoder and takes up convolution layers as decoder. With the adaptive preprocessing and network training plan generated by the proposed automatic experiment planning pipeline, nn-TransUNet is able to fulfill the target of medical image segmentation in heart MRI tasks. nn-TransUNet achieved state-of-the-art level in heart MRI segmentation task on Automatic Cardiac Diagnosis Challenge (ACDC) Dataset. It also saves the effort and time to manually tune the parameters and hyperparameters, which can reduce the burden on researchers.
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Affiliation(s)
- Li Zhao
- School of Information Science and Engineering, Yunnan University, Kunming 650504, China
| | - Dongming Zhou
- School of Information Science and Engineering, Yunnan University, Kunming 650504, China
| | - Xin Jin
- School of Software, Yunnan University, Kunming 650504, China
| | - Weina Zhu
- School of Information Science and Engineering, Yunnan University, Kunming 650504, China
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Zhang YJ, Yu ZF, Liu JK, Huang TJ. Neural Decoding of Visual Information Across Different Neural Recording Modalities and Approaches. MACHINE INTELLIGENCE RESEARCH 2022. [PMCID: PMC9283560 DOI: 10.1007/s11633-022-1335-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Vision plays a peculiar role in intelligence. Visual information, forming a large part of the sensory information, is fed into the human brain to formulate various types of cognition and behaviours that make humans become intelligent agents. Recent advances have led to the development of brain-inspired algorithms and models for machine vision. One of the key components of these methods is the utilization of the computational principles underlying biological neurons. Additionally, advanced experimental neuroscience techniques have generated different types of neural signals that carry essential visual information. Thus, there is a high demand for mapping out functional models for reading out visual information from neural signals. Here, we briefly review recent progress on this issue with a focus on how machine learning techniques can help in the development of models for contending various types of neural signals, from fine-scale neural spikes and single-cell calcium imaging to coarse-scale electroencephalography (EEG) and functional magnetic resonance imaging recordings of brain signals.
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Mohsan SAH, Zahra QUA, Khan MA, Alsharif MH, Elhaty IA, Jahid A. Role of Drone Technology Helping in Alleviating the COVID-19 Pandemic. MICROMACHINES 2022; 13:1593. [PMID: 36295946 PMCID: PMC9612140 DOI: 10.3390/mi13101593] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/21/2022] [Revised: 09/18/2022] [Accepted: 09/22/2022] [Indexed: 06/16/2023]
Abstract
The COVID-19 pandemic, caused by a new coronavirus, has affected economic and social standards as governments and healthcare regulatory agencies throughout the world expressed worry and explored harsh preventative measures to counteract the disease's spread and intensity. Several academics and experts are primarily concerned with halting the continuous spread of the unique virus. Social separation, the closing of borders, the avoidance of big gatherings, contactless transit, and quarantine are important methods. Multiple nations employ autonomous, digital, wireless, and other promising technologies to tackle this coronary pneumonia. This research examines a number of potential technologies, including unmanned aerial vehicles (UAVs), artificial intelligence (AI), blockchain, deep learning (DL), the Internet of Things (IoT), edge computing, and virtual reality (VR), in an effort to mitigate the danger of COVID-19. Due to their ability to transport food and medical supplies to a specific location, UAVs are currently being utilized as an innovative method to combat this illness. This research intends to examine the possibilities of UAVs in the context of the COVID-19 pandemic from several angles. UAVs offer intriguing options for delivering medical supplies, spraying disinfectants, broadcasting communications, conducting surveillance, inspecting, and screening patients for infection. This article examines the use of drones in healthcare as well as the advantages and disadvantages of strict adoption. Finally, challenges, opportunities, and future work are discussed to assist in adopting drone technology to tackle COVID-19-like diseases.
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Affiliation(s)
- Syed Agha Hassnain Mohsan
- Optical Communications Laboratory, Ocean College, Zhejiang University, Zheda Road 1, Zhoushan 316021, China
| | - Qurat ul Ain Zahra
- Department of Biomedical Engineering, Biomedical Imaging Centre, University of Science and Technology of China, Hefei 230009, China
| | - Muhammad Asghar Khan
- Department of Electrical Engineering, Hamdard Institute of Engineering & Technology, Islamabad 44000, Pakistan
| | - Mohammed H. Alsharif
- Department of Electrical Engineering, College of Electronics and Information Engineering, Sejong University, Seoul 05006, Korea
| | - Ismail A. Elhaty
- Department of Nutrition and Dietetics, Faculty of Health Sciences, Istanbul Gelisim University, Istanbul P.O. Box 34310, Turkey
| | - Abu Jahid
- School of Electrical Engineering and Computer Science, University of Ottawa, 25 Templeton St., Ottawa, ON K1N 6N5, Canada
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48
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On coregionalized multivariate Gaussian Markov random fields: construction, parameterization, and Bayesian estimation and inference. TEST-SPAIN 2022. [DOI: 10.1007/s11749-022-00832-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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49
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Bhosale YH, Patnaik KS. Application of Deep Learning Techniques in Diagnosis of Covid-19 (Coronavirus): A Systematic Review. Neural Process Lett 2022; 55:1-53. [PMID: 36158520 PMCID: PMC9483290 DOI: 10.1007/s11063-022-11023-0] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/29/2022] [Indexed: 01/09/2023]
Abstract
Covid-19 is now one of the most incredibly intense and severe illnesses of the twentieth century. Covid-19 has already endangered the lives of millions of people worldwide due to its acute pulmonary effects. Image-based diagnostic techniques like X-ray, CT, and ultrasound are commonly employed to get a quick and reliable clinical condition. Covid-19 identification out of such clinical scans is exceedingly time-consuming, labor-intensive, and susceptible to silly intervention. As a result, radiography imaging approaches using Deep Learning (DL) are consistently employed to achieve great results. Various artificial intelligence-based systems have been developed for the early prediction of coronavirus using radiography pictures. Specific DL methods such as CNN and RNN noticeably extract extremely critical characteristics, primarily in diagnostic imaging. Recent coronavirus studies have used these techniques to utilize radiography image scans significantly. The disease, as well as the present pandemic, was studied using public and private data. A total of 64 pre-trained and custom DL models concerning imaging modality as taxonomies are selected from the studied articles. The constraints relevant to DL-based techniques are the sample selection, network architecture, training with minimal annotated database, and security issues. This includes evaluating causal agents, pathophysiology, immunological reactions, and epidemiological illness. DL-based Covid-19 detection systems are the key focus of this review article. Covid-19 work is intended to be accelerated as a result of this study.
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Affiliation(s)
- Yogesh H. Bhosale
- Department of Computer Science and Engineering, Birla Institute of Technology, Mesra, Ranchi 835215 India
| | - K. Sridhar Patnaik
- Department of Computer Science and Engineering, Birla Institute of Technology, Mesra, Ranchi 835215 India
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Lai G, Liu H, Deng J, Li K, Xie B. A Novel 3-Gene Signature for Identifying COVID-19 Patients Based on Bioinformatics and Machine Learning. Genes (Basel) 2022; 13:genes13091602. [PMID: 36140771 PMCID: PMC9498787 DOI: 10.3390/genes13091602] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Revised: 08/29/2022] [Accepted: 09/06/2022] [Indexed: 12/15/2022] Open
Abstract
Although many biomarkers associated with coronavirus disease 2019 (COVID-19) were found, a novel signature relevant to immune cells has not been developed. In this work, the “CIBERSORT” algorithm was used to assess the fraction of immune infiltrating cells in GSE152641 and GSE171110. Key modules associated with important immune cells were selected by the “WGCNA” package. The “GO” enrichment analysis was used to reveal the biological function associated with COVID-19. The “Boruta” algorithm was used to screen candidate genes, and the “LASSO” algorithm was used for collinearity reduction. A novel gene signature was developed based on multivariate logistic regression analysis. Subsequently, M0 macrophages (PRAUC = 0.948 in GSE152641 and PRAUC = 0.981 in GSE171110) and neutrophils (PRAUC = 0.892 in GSE152641 and PRAUC = 0.960 in GSE171110) were considered as important immune cells. Forty-three intersected genes from two modules were selected, which mainly participated in some immune-related activities. Finally, a three-gene signature comprising CLEC4D, DUSP13, and UNC5A that can accurately distinguish COVID-19 patients and healthy controls in three datasets was constructed. The ROCAUC was 0.974 in the training set, 0.946 in the internal test set, and 0.709 in the external test set. In conclusion, we constructed a three-gene signature to identify COVID-19, and CLEC4D, DUSP13, and UNC5A may be potential biomarkers for COVID-19 patients.
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