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Tian WH, Jin Y, Liao YC, Faraj TK, Guo XY, Maharachchikumbura SSN. Phylogenetic Insights Reveal New Taxa in Thyridariaceae and Massarinaceae. J Fungi (Basel) 2024; 10:542. [PMID: 39194868 DOI: 10.3390/jof10080542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Revised: 07/29/2024] [Accepted: 07/31/2024] [Indexed: 08/29/2024] Open
Abstract
Pleosporales is a highly diverse (and the largest) order in Dothideomycetes, and it is widespread in decaying plants in various environments around the world. During a survey of fungal diversity in Sichuan Province, China, specimens of hyphomycetous and Thyridaria-like fungi were collected from dead branches of pine trees and cherry trees. These taxa were initially identified as members of Massarinaceae and Thyridariaceae through morphological examination. Phylogenetic analyses of the Thyridariaceae, combining ITS, SSU, LSU, RPB2, and TEF1 sequence data, indicated a distinct clade sister to Pseudothyridariella and Thyridariella, distinct from any genus in the family. Thus, a new genus, Vaginospora, is proposed to accommodate the type species Vaginospora sichuanensis, which is characterized by semi-immersed globose to oblong ascomata with an ostiolar neck, cylindrical to clavate asci with an ocular chamber, and hyaline to dark brown, fusiform, 3-5-transversely septate ascospores with an inconspicuous mucilaginous sheath. Based on the morphological comparisons and multi-locus phylogenetic analyses (ITS, SSU, LSU, RPB2, and TEF1) of the Massarinaceae, we have identified three collections belonging to the genus Helminthosporium, leading us to propose H. filamentosa sp. nov., H. pini sp. nov., and H. velutinum as a new host record. According to Phylogenetic analysis, H. pini formed an independent clade sister to H. austriacum and H. yunnanense, and H. filamentosa represents the closest sister clade to H. quercinum. Helminthosporium pini is distinct from H. austriacum by the shorter conidiophores and H. yunnanense by the longer and wider conidia. The H. filamentosa differs from H. quercinum in having longer conidiophores and smaller conidia. This study extends our understanding of diversity within Thyridariaceae and Helminthosporium. Our findings underscore the rich biodiversity and potential for discovering novel fungal taxa within these groups.
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Affiliation(s)
- Wen-Hui Tian
- Center for Informational Biology, College of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China
| | - Yan Jin
- Center for Informational Biology, College of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China
| | - Yue-Chi Liao
- Center for Informational Biology, College of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China
| | - Turki Kh Faraj
- Department of Soil Science, College of Food and Agriculture Sciences, King Saud University, P.O. Box 145111, Riyadh 11362, Saudi Arabia
| | - Xin-Yong Guo
- College of Life Science, Shihezi University, Shihezi 832000, China
| | - Sajeewa S N Maharachchikumbura
- Center for Informational Biology, College of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, China
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Mack J, Sproule A, Shields S, Seifert K, Smith M, Overy D. Two novel Pleosporales species isolated from the bark of Acer saccharum. Fungal Syst Evol 2024; 13:1-14. [PMID: 39135883 PMCID: PMC11317865 DOI: 10.3114/fuse.2024.13.01] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Accepted: 01/08/2024] [Indexed: 08/15/2024] Open
Abstract
During a survey of culturable microfungi from the bark of sugar maple (Acer saccharum), Atrocalyx glutinosus and Nigrograna rubescens, two novel species of Pleosporales (Dothideomycetes) were isolated from several locations in eastern Ontario, Canada. Formal species descriptions are presented based on unique colony phenotypes and micromorphological characteristics and supported using multi-locus molecular phylogenetic comparisons with similar species. Both A. glutinosus and N. rubescens produce pycnidial asexual morphs in culture. As their names imply, under specific culture conditions, A. glutinosus excretes large amounts of the glutinous polysaccharide pullulan and N. rubescens produces a dark red naphthoquinone pigment that diffuses in the culture medium. Citation: Mack JN, Sproule A, Shields SW, Seifert KA, Smith M, Overy DP (2024). Two novel Pleosporales species isolated from the bark of Acer saccharum . Fungal Systematics and Evolution 13: 1-14. doi: 10.3114/fuse.2024.13.01.
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Affiliation(s)
- J.N. Mack
- Biodiversity (Mycology and Microbiology), Agriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, Ontario K1A 0C6
- Department of Biology, Carleton University, 125 Colonel By Drive, Ottawa, ON K1S 5B6
| | - A. Sproule
- Biodiversity (Mycology and Microbiology), Agriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, Ontario K1A 0C6
| | - S.W. Shields
- Biodiversity (Mycology and Microbiology), Agriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, Ontario K1A 0C6
| | - K.A. Seifert
- Department of Biology, Carleton University, 125 Colonel By Drive, Ottawa, ON K1S 5B6
| | - M. Smith
- Department of Biology, Carleton University, 125 Colonel By Drive, Ottawa, ON K1S 5B6
| | - D.P. Overy
- Biodiversity (Mycology and Microbiology), Agriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, Ontario K1A 0C6
- Department of Biology, Carleton University, 125 Colonel By Drive, Ottawa, ON K1S 5B6
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3
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Phookamsak R, Hongsanan S, Bhat DJ, Wanasinghe DN, Promputtha I, Suwannarach N, Kumla J, Xie N, Dawoud TM, Mortimer PE, Xu J, Lumyong S. Exploring ascomycete diversity in Yunnan II: Introducing three novel species in the suborder Massarineae (Dothideomycetes, Pleosporales) from fern and grasses. MycoKeys 2024; 104:9-50. [PMID: 38665970 PMCID: PMC11040200 DOI: 10.3897/mycokeys.104.112149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Accepted: 10/09/2023] [Indexed: 04/28/2024] Open
Abstract
This article presents the results of an ongoing inventory of Ascomycota in Yunnan, China, carried out as part of the research project series "Exploring ascomycete diversity in Yunnan". From over 100 samples collected from diverse host substrates, microfungi have been isolated, identified and are currently being documented. The primary objective of this research is to promote the discovery of novel taxa and explore the ascomycete diversity in the region, utilising a morphology-phylogeny approach. This article represents the second series of species descriptions for the project and introduces three undocumented species found in the families Bambusicolaceae, Dictyosporiaceae and Periconiaceae, belonging to the suborder Massarineae (Pleosporales, Dothideomycetes). These novel taxa exhibit typical morphological characteristics of Bambusicola, Periconia and Trichobotrys, leading to their designation as Bambusicolahongheensis, Periconiakunmingensis and Trichobotryssinensis. Comprehensive multigene phylogenetic analyses were conducted to validate the novelty of these species. The results revealed well-defined clades that are clearly distinct from other related species, providing robust support for their placement within their respective families. Notably, this study unveils the phylogenetic affinity of Trichobotrys within Dictyosporiaceae for the first time. Additionally, the synanamorphism for the genus Trichobotrys is also reported for the first time. Detailed descriptions, illustrations and updated phylogenies of the novel species are provided, and thus presenting a valuable resource for researchers and mycologists interested in the diversity of ascomycetes in Yunnan. By enhancing our understanding of the Ascomycota diversity in this region, this research contributes to the broader field of fungal taxonomy and their phylogenetic understanding.
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Affiliation(s)
- Rungtiwa Phookamsak
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan Province, China
- Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe, 654400, Yunnan Province, China
| | - Sinang Hongsanan
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand
- Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China
| | - Darbhe Jayarama Bhat
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia
- Vishnugupta Vishwavidyapeetam, Ashoke, Gokarna 581326, India
| | - Dhanushka N. Wanasinghe
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan Province, China
- Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe, 654400, Yunnan Province, China
- CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming 650201, Yunnan Province, China
- Center for Mountain Futures (CMF), Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan Province, China
| | - Itthayakorn Promputtha
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Nakarin Suwannarach
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Jaturong Kumla
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Ning Xie
- Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China
| | - Turki M. Dawoud
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia
| | - Peter E. Mortimer
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan Province, China
- Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe, 654400, Yunnan Province, China
| | - Jianchu Xu
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan Province, China
- Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe, 654400, Yunnan Province, China
- CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming 650201, Yunnan Province, China
| | - Saisamorn Lumyong
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
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4
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Xu RF, Karunarathna SC, Phukhamsakda C, Dai DQ, Elgorban AM, Suwannarach N, Kumla J, Wang XY, Tibpromma S. Four new species of Dothideomycetes (Ascomycota) from Pará Rubber ( Heveabrasiliensis) in Yunnan Province, China. MycoKeys 2024; 103:71-95. [PMID: 38560534 PMCID: PMC10980880 DOI: 10.3897/mycokeys.103.117580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 01/29/2024] [Indexed: 04/04/2024] Open
Abstract
The tropical areas in southern and south-western Yunnan are rich in fungal diversity. Additionally, the diversity of seed flora in Yunnan Province is higher than in other regions in China and the abundant endemic species of woody plants provide favourable substrates for fungi. Rubber plantations in Yunnan Province are distributed over a large area, especially in Xishuangbanna. During a survey of rubber-associated fungi in Yunnan Province, China, dead rubber branches with fungal fruiting bodies were collected. Morphological characteristics and multigene phylogenetic analyses (ITS, LSU, SSU, rpb2 and tef1-α) revealed four distinct new species, described herein as Melomastiapuerensis, Nigrogranalincangensis, Pseudochaetosphaeronemalincangensis and Pseudochaetosphaeronemaxishuangbannaensis. Detailed descriptions, illustrations and phylogenetic trees are provided to show the taxonomic placements of these new species.
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Affiliation(s)
- Rui-Fang Xu
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
| | - Samantha C. Karunarathna
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China
- School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand
| | | | - Dong-Qin Dai
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China
| | | | - Nakarin Suwannarach
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Jaturong Kumla
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Xiao-Yan Wang
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai, Thailand
| | - Saowaluck Tibpromma
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China
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Hu H, He M, Wu Y, Long S, Zhang X, Liu L, Shen X, Wijayawardene NN, Meng Z, Long Q, Kang J, Li Q. Taxonomic and phylogenetic characterisations of six species of Pleosporales (in Didymosphaeriaceae, Roussoellaceae and Nigrogranaceae) from China. MycoKeys 2023; 100:123-151. [PMID: 38074622 PMCID: PMC10701915 DOI: 10.3897/mycokeys.100.109423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 10/27/2023] [Indexed: 03/19/2024] Open
Abstract
Pleosporales comprise a diverse group of fungi with a global distribution and significant ecological importance. A survey on Pleosporales (in Didymosphaeriaceae, Roussoellaceae and Nigrogranaceae) in Guizhou Province, China, was conducted. Specimens were identified, based on morphological characteristics and phylogenetic analyses using a dataset composed of ITS, LSU, SSU, tef1 and rpb2 loci. Maximum Likelihood (ML) and Bayesian analyses were performed. As a result, three new species (Neokalmusiakarka, Nigrogranaschinifolium and N.trachycarpus) have been discovered, along with two new records for China (Roussoellaneopustulans and R.doimaesalongensis) and a known species (Roussoellapseudohysterioides). Morphologically similar species and phylogenetically close taxa are compared and discussed. This study provides detailed information and descriptions of all newly-identified taxa.
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Affiliation(s)
- Hongmin Hu
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, Guizhou province, China
| | - Minghui He
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, Guizhou province, China
| | - Youpeng Wu
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, Guizhou province, China
| | - Sihan Long
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, Guizhou province, China
| | - Xu Zhang
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, Guizhou province, China
| | - Lili Liu
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, Guizhou province, China
| | - Xiangchun Shen
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, Guizhou province, China
| | - Nalin N. Wijayawardene
- The High Efficacy Application of Natural Medicinal Resources Engineering Center of Guizhou Province (The Key Laboratory of Optimal Utilization of Natural Medicine Resources), School of Pharmaceutical Sciences, Guizhou Medical University, University Town, Guian New District, Guiyang, Guizhou province, China
- Key Laboratory of Infectious Immune and Antibody Engineering of Guizhou Province, Cellular Immunotherapy Engineering Research Center of Guizhou Province, Immune Cells and Antibody Engineering Research Center of Guizhou Province, School of Biology and Engineering, Guizhou Medical University, Guiyang, Guizhou province, China
| | - Zebin Meng
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan province, China
| | - Qingde Long
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, Guizhou province, China
| | - Jichuan Kang
- Tropical Microbiology Research Foundation, 96/N/10, Meemanagoda Road, 10230 Pannipitiya, Sri Lanka
| | - Qirui Li
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, Guizhou province, China
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Fungi associated with woody tissues of Acer pseudoplatanus in forest stands with different health status concerning sooty bark disease (Cryptostroma corticale). Mycol Prog 2023. [DOI: 10.1007/s11557-022-01861-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
AbstractFrom 2018 to 2020, Germany experienced periods of exceptional weather conditions. Extremely high summer temperatures and precipitation deficits induced stress and mortality in forest trees. Acer pseudoplatanus (sycamore) was one of the affected tree species. Symptoms of sooty bark disease (SBD) and severe damage of entire stands, both caused by the fungal species Cryptostroma corticale, were reported more frequently. To explore the non-symptomatic distribution of C. corticale, wood cores from visibly healthy sycamore stems were sampled and all outgrowing fungi were identified and recorded. In total, 50 trees, aged 30–65 years, were sampled at five different forest stands, from which 91 endophytic filamentous morphotypes could be isolated. The fungal endophytic community in the woody tissue of the sycamore trees varied greatly at the different sites and between the trees. The number of isolated morphotypes at the different sites ranged from 13 to 44 and no morphotype was found at all sites. At 1.20-m stem height, 3.3 fungi could be isolated from woody tissue per tree on average. The most abundant species isolated from visibly healthy sycamore in regard to both occurrence at the studied sites and continuity was C. corticale. It was recorded at four of the studied forest stands, from 26% of all studied sycamore trees, and had a frequency of 7.85% relative to the 293 isolated filamentous strains that were isolated. The second most abundant species was Xylaria longipes followed by Lopadostoma turgidum. In this study clear evidence for the endophytic lifestyle of C. corticale is presented which thus appears to be spread further than expected based on visible SBD symptoms.
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Lu L, Karunarathna SC, Dai DQ, Jayawardena RS, Suwannarach N, Tibpromma S. Three new species of Nigrograna (Dothideomycetes, Pleosporales) associated with Arabica coffee from Yunnan Province, China. MycoKeys 2022; 94:51-71. [PMID: 36760538 PMCID: PMC9836489 DOI: 10.3897/mycokeys.94.95751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 11/17/2022] [Indexed: 12/15/2022] Open
Abstract
Coffee is one of the most important cash crops in Yunnan Province, China. Yunnan is ranked as the biggest producer of high-quality coffee in China. During surveys of microfungi from coffee plantations in Yunnan, six fungal strains that resemble Nigrogranaceae were collected. Multi-gene analyses of a combined SSU-LSU-ITS-rpb2-tef1-α sequence data matrix were used to infer the phylogenetic position of the new species in Nigrograna while morphological characteristics were used to deduce the taxonomic position of the new species. Six fungal strains isolated from decaying branches of Coffeaarabica represent three new saprobic species in Nigrograna. The three new species, N.asexualis, N.coffeae, and N.puerensis, are described with full (macro and micro characteristics) descriptions, illustrations, and a phylogenetic tree that shows the phylogenetic position of new taxa.
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Affiliation(s)
- Li Lu
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China,Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Samantha C. Karunarathna
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China
| | - Dong-qin Dai
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China
| | | | | | - Saowaluck Tibpromma
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China
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8
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Hu HM, Liu LL, Zhang X, Lin Y, Shen XC, Long SH, Kang JC, Wijayawardene NN, Li QR, Long QD. New species and records of Neomassaria, Oxydothis and Roussoella (Pezizomycotina, Ascomycota) associated with palm and bamboo from China. MycoKeys 2022; 93:165-191. [PMID: 36761913 PMCID: PMC9836516 DOI: 10.3897/mycokeys.93.89888] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Accepted: 09/25/2022] [Indexed: 11/12/2022] Open
Abstract
Several micro fungi were gathered from bamboo and palm in Guizhou Province, China. In morphology, these taxa resemble Neomassaria, Roussoella and Oxydothis. Multi-gene phylogenetic analyses based on combined ITS, LSU, SSU, rpb2 and tef1 loci confirmed that two are new geographical records for China, (viz. Roussoellasiamensis, Neomassariafabacearum), while two of them are new to science (viz. Oxydothisfortunei sp. nov. and Roussoellabambusarum sp. nov.). The stromata of Roussoellabambusarum are similar to those of R.thailandica, but its ascospores are larger. In addition, multi-gene phylogenetic analyses show that Oxydothisfortunei is closely related to O.inaequalis, but the J- ascus subapical ring as well as the ascospores of O.inaequalis are smaller. Morphological descriptions and illustrations of all species are provided.
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Affiliation(s)
- Hong Min Hu
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, China
| | - Li Li Liu
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, China
| | - Xu Zhang
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, China
| | - Yan Lin
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, China
| | - Xiang Chun Shen
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, China
| | - Si Han Long
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, China
| | - Ji Chuan Kang
- The Key Laboratory of Optimal Utilization of Natural Medicine Resources, School of Pharmaceutical Sciences, Guizhou Medical University, University Town, Guian New District, Guizhou, China
| | - Nalin N. Wijayawardene
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, China,Key Laboratory of Infectious Immune and Antibody Engineering of Guizhou Province, Cellular Immunotherapy Engineering Research Center of Guizhou Province, School of Biology and Engineering, Guizhou Medical University, Guiyang 550025, China,Immune Cells and Antibody Engineering Research Center of Guizhou Province, School of Biology and Engineering, Guizhou Medical University, Guiyang 550025, China
| | - Qi Rui Li
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, China
| | - Qing De Long
- State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang, China
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Wanasinghe DN, Mortimer PE. Taxonomic and Phylogenetic Insights into Novel Ascomycota from Forest Woody Litter. BIOLOGY 2022; 11:biology11060889. [PMID: 35741409 PMCID: PMC9220210 DOI: 10.3390/biology11060889] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Revised: 06/02/2022] [Accepted: 06/07/2022] [Indexed: 11/25/2022]
Abstract
While surveying the mycobiomes of dead woody litter in Yunnan Province, China, numerous isolates with affinity to Pleosporales (Dothideomycetes, Ascomycota) were recovered. The present work characterizes two species associated with dead woody twigs found in terrestrial habitats in the Kunming area of Yunnan. The novel taxa were recognized based on a polyphasic approach, including morphological examination and multiple gene phylogenetic analyses (non-translated loci and protein-coding regions). Neokalmusia jonahhulmei sp. nov. is introduced in Didymosphaeriaceae (Pleosporales) as a woody-based saprobic ascomycete that possesses multiloculate ascostromata immersed under a black clypeus-like structure, and three-septate, brown, fusiform, guttulate ascospores. Thyridaria jonahhulmei (Thyridariaceae) is introduced with teleomorphic and anamorphic (coelomycetous) characteristics. The teleomorph has the following characteristics: globose to subglobose ascomata with an ostiolum, a pruinose layer of yellow to reddish- or orange-brown material appearing around the top of the ostiolar necks, and brown, ellipsoid to fusoid, two-to-three-septate, euseptate, rough-walled ascospores; the anamorph features pycnidial conidiomata, phialidic, ampulliform to doliiform, conidiogenous cells, and brown, guttulate, ellipsoidal, aseptate conidia.
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Affiliation(s)
- Dhanushka N. Wanasinghe
- Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe 654400, China
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
- Correspondence: (D.N.W.); (P.E.M.)
| | - Peter E. Mortimer
- Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe 654400, China
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
- Correspondence: (D.N.W.); (P.E.M.)
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Dai DQ, Wijayawardene NN, Dayarathne MC, Kumla J, Han LS, Zhang GQ, Zhang X, Zhang TT, Chen HH. Taxonomic and Phylogenetic Characterizations Reveal Four New Species, Two New Asexual Morph Reports, and Six New Country Records of Bambusicolous Roussoella from China. J Fungi (Basel) 2022; 8:jof8050532. [PMID: 35628787 PMCID: PMC9145633 DOI: 10.3390/jof8050532] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Revised: 05/17/2022] [Accepted: 05/18/2022] [Indexed: 02/01/2023] Open
Abstract
During the ongoing investigation of bambusicolous ascomycetous fungi in Yunnan, China, 24 specimens belonging to the family Roussoellaceae were collected and identified based on morphological features and phylogenetic support. Maximum-likelihood (ML) analyses and Bayesian analyses were generated based on the combined data set of ITS, LSU, tef1, and rpb2 loci. The phylogenetic analyses revealed four novel lineages in Roussoella s. str.; thus, we introduced four new species viz., Roussoella multiloculate sp. nov., R. papillate sp. nov., R. sinensis sp. nov., and R. uniloculata sp. nov. Their morphological characters were compared with the known Roussoella taxa, which lack sequence data in the GenBank. Asexual morphs of R. kunmingensis and R. padinae were recorded from dead bamboo culms in China (from the natural substrates) for the first time. Neoroussoella bambusae, Roussoella japanensis, R. nitidula, R. padinae, R. scabrispora, and R. tuberculate were also reported as the first records from China. All new taxa are described and illustrated in detail. Plates are provided for new reports.
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Affiliation(s)
- Dong-Qin Dai
- Center for Yunnan Plateau Biological Resources Protection and Utilization, Yunnan Engineering Research Center of Fruit Wine, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China; (D.-Q.D.); (N.N.W.); (L.-S.H.); (G.-Q.Z.); (X.Z.); (T.-T.Z.)
| | - Nalin N. Wijayawardene
- Center for Yunnan Plateau Biological Resources Protection and Utilization, Yunnan Engineering Research Center of Fruit Wine, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China; (D.-Q.D.); (N.N.W.); (L.-S.H.); (G.-Q.Z.); (X.Z.); (T.-T.Z.)
- Section of Genetics, Institute for Research and Development in Health and Social Care, No: 393/3, Lily Avenue, Off Robert Gunawardane Mawatha, Battaramulla 10120, Sri Lanka
| | - Monika C. Dayarathne
- Postgraduate Institute of Agriculture (PGIA), University of Peradeniya, Peradeniya 20400, Sri Lanka;
| | - Jaturong Kumla
- Research Centre of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand;
| | - Li-Su Han
- Center for Yunnan Plateau Biological Resources Protection and Utilization, Yunnan Engineering Research Center of Fruit Wine, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China; (D.-Q.D.); (N.N.W.); (L.-S.H.); (G.-Q.Z.); (X.Z.); (T.-T.Z.)
| | - Gui-Qing Zhang
- Center for Yunnan Plateau Biological Resources Protection and Utilization, Yunnan Engineering Research Center of Fruit Wine, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China; (D.-Q.D.); (N.N.W.); (L.-S.H.); (G.-Q.Z.); (X.Z.); (T.-T.Z.)
| | - Xian Zhang
- Center for Yunnan Plateau Biological Resources Protection and Utilization, Yunnan Engineering Research Center of Fruit Wine, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China; (D.-Q.D.); (N.N.W.); (L.-S.H.); (G.-Q.Z.); (X.Z.); (T.-T.Z.)
| | - Ting-Ting Zhang
- Center for Yunnan Plateau Biological Resources Protection and Utilization, Yunnan Engineering Research Center of Fruit Wine, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China; (D.-Q.D.); (N.N.W.); (L.-S.H.); (G.-Q.Z.); (X.Z.); (T.-T.Z.)
| | - Huan-Huan Chen
- Center for Yunnan Plateau Biological Resources Protection and Utilization, Yunnan Engineering Research Center of Fruit Wine, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China; (D.-Q.D.); (N.N.W.); (L.-S.H.); (G.-Q.Z.); (X.Z.); (T.-T.Z.)
- Correspondence: ; Tel.: +86-19169361002
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11
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Taxonomy and Phylogeny of Novel and Extant Taxa in Pleosporales Associated with Mangifera indica from Yunnan, China (Series I). J Fungi (Basel) 2022; 8:jof8020152. [PMID: 35205906 PMCID: PMC8876165 DOI: 10.3390/jof8020152] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 01/27/2022] [Accepted: 01/28/2022] [Indexed: 11/17/2022] Open
Abstract
Pleosporales is the largest fungal order with a worldwide distribution in terrestrial and aquatic environments. During investigations of saprobic fungi associated with mango (Mangifera indica) in Baoshan and Honghe, Yunnan, China, fungal taxa belonging to pleosporales were collected. Morphological examinations and phylogenetic analyses of ITS, LSU, SSU, rpb2 and tef1-α loci were used to identify the fungal taxa. A new genus, Mangifericomes; four new species, namely Mangifericomes hongheensis, Neomassaria hongheensis, Paramonodictys hongheensis, and Paramonodictys yunnanensis; and six new host and country records, namely Byssosphaeria siamensis, Crassiparies quadrisporus, Paradictyoarthrinium aquatica, Phaeoseptum mali, Torula fici, and Vaginatispora amygdali, are introduced. Photoplates, full descriptions, and phylogenetic trees to show the placement of new and known taxa are provided.
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12
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Boonmee S, Wanasinghe DN, Calabon MS, Huanraluek N, Chandrasiri SKU, Jones GEB, Rossi W, Leonardi M, Singh SK, Rana S, Singh PN, Maurya DK, Lagashetti AC, Choudhary D, Dai YC, Zhao CL, Mu YH, Yuan HS, He SH, Phookamsak R, Jiang HB, Martín MP, Dueñas M, Telleria MT, Kałucka IL, Jagodziński AM, Liimatainen K, Pereira DS, Phillips AJL, Suwannarach N, Kumla J, Khuna S, Lumyong S, Potter TB, Shivas RG, Sparks AH, Vaghefi N, Abdel-Wahab MA, Abdel-Aziz FA, Li GJ, Lin WF, Singh U, Bhatt RP, Lee HB, Nguyen TTT, Kirk PM, Dutta AK, Acharya K, Sarma VV, Niranjan M, Rajeshkumar KC, Ashtekar N, Lad S, Wijayawardene NN, Bhat DJ, Xu RJ, Wijesinghe SN, Shen HW, Luo ZL, Zhang JY, Sysouphanthong P, Thongklang N, Bao DF, Aluthmuhandiram JVS, Abdollahzadeh J, Javadi A, Dovana F, Usman M, Khalid AN, Dissanayake AJ, Telagathoti A, Probst M, Peintner U, Garrido-Benavent I, Bóna L, Merényi Z, Boros L, Zoltán B, Stielow JB, Jiang N, Tian CM, Shams E, Dehghanizadeh F, Pordel A, Javan-Nikkhah M, Denchev TT, Denchev CM, Kemler M, Begerow D, Deng CY, Harrower E, Bozorov T, Kholmuradova T, Gafforov Y, Abdurazakov A, Xu JC, Mortimer PE, Ren GC, Jeewon R, Maharachchikumbura SSN, Phukhamsakda C, Mapook A, Hyde KD. Fungal diversity notes 1387-1511: taxonomic and phylogenetic contributions on genera and species of fungal taxa. FUNGAL DIVERS 2021; 111:1-335. [PMID: 34899100 PMCID: PMC8648402 DOI: 10.1007/s13225-021-00489-3] [Citation(s) in RCA: 64] [Impact Index Per Article: 21.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2021] [Accepted: 08/10/2021] [Indexed: 01/01/2023]
Abstract
This article is the 13th contribution in the Fungal Diversity Notes series, wherein 125 taxa from four phyla, ten classes, 31 orders, 69 families, 92 genera and three genera incertae sedis are treated, demonstrating worldwide and geographic distribution. Fungal taxa described and illustrated in the present study include three new genera, 69 new species, one new combination, one reference specimen and 51 new records on new hosts and new geographical distributions. Three new genera, Cylindrotorula (Torulaceae), Scolecoleotia (Leotiales genus incertae sedis) and Xenovaginatispora (Lindomycetaceae) are introduced based on distinct phylogenetic lineages and unique morphologies. Newly described species are Aspergillus lannaensis, Cercophora dulciaquae, Cladophialophora aquatica, Coprinellus punjabensis, Cortinarius alutarius, C. mammillatus, C. quercoflocculosus, Coryneum fagi, Cruentomycena uttarakhandina, Cryptocoryneum rosae, Cyathus uniperidiolus, Cylindrotorula indica, Diaporthe chamaeropicola, Didymella azollae, Diplodia alanphillipsii, Dothiora coronicola, Efibula rodriguezarmasiae, Erysiphe salicicola, Fusarium queenslandicum, Geastrum gorgonicum, G. hansagiense, Helicosporium sexualis, Helminthosporium chiangraiensis, Hongkongmyces kokensis, Hydrophilomyces hydraenae, Hygrocybe boertmannii, Hyphoderma australosetigerum, Hyphodontia yunnanensis, Khaleijomyces umikazeana, Laboulbenia divisa, Laboulbenia triarthronis, Laccaria populina, Lactarius pallidozonarius, Lepidosphaeria strobelii, Longipedicellata megafusiformis, Lophiotrema lincangensis, Marasmius benghalensis, M. jinfoshanensis, M. subtropicus, Mariannaea camelliae, Melanographium smilaxii, Microbotryum polycnemoides, Mimeomyces digitatus, Minutisphaera thailandensis, Mortierella solitaria, Mucor harpali, Nigrograna jinghongensis, Odontia huanrenensis, O. parvispina, Paraconiothyrium ajrekarii, Parafuscosporella niloticus, Phaeocytostroma yomensis, Phaeoisaria synnematicus, Phanerochaete hainanensis, Pleopunctum thailandicum, Pleurotheciella dimorphospora, Pseudochaetosphaeronema chiangraiense, Pseudodactylaria albicolonia, Rhexoacrodictys nigrospora, Russula paravioleipes, Scolecoleotia eriocamporesi, Seriascoma honghense, Synandromyces makranczyi, Thyridaria aureobrunnea, Torula lancangjiangensis, Tubeufia longihelicospora, Wicklowia fusiformispora, Xenovaginatispora phichaiensis and Xylaria apiospora. One new combination, Pseudobactrodesmium stilboideus is proposed. A reference specimen of Comoclathris permunda is designated. New host or distribution records are provided for Acrocalymma fici, Aliquandostipite khaoyaiensis, Camarosporidiella laburni, Canalisporium caribense, Chaetoscutula juniperi, Chlorophyllum demangei, C. globosum, C. hortense, Cladophialophora abundans, Dendryphion hydei, Diaporthe foeniculina, D. pseudophoenicicola, D. pyracanthae, Dictyosporium pandanicola, Dyfrolomyces distoseptatus, Ernakulamia tanakae, Eutypa flavovirens, E. lata, Favolus septatus, Fusarium atrovinosum, F. clavum, Helicosporium luteosporum, Hermatomyces nabanheensis, Hermatomyces sphaericoides, Longipedicellata aquatica, Lophiostoma caudata, L. clematidis-vitalbae, Lophiotrema hydei, L. neoarundinaria, Marasmiellus palmivorus, Megacapitula villosa, Micropsalliota globocystis, M. gracilis, Montagnula thailandica, Neohelicosporium irregulare, N. parisporum, Paradictyoarthrinium diffractum, Phaeoisaria aquatica, Poaceascoma taiwanense, Saproamanita manicata, Spegazzinia camelliae, Submersispora variabilis, Thyronectria caudata, T. mackenziei, Tubeufia chiangmaiensis, T. roseohelicospora, Vaginatispora nypae, Wicklowia submersa, Xanthagaricus necopinatus and Xylaria haemorrhoidalis. The data presented herein are based on morphological examination of fresh specimens, coupled with analysis of phylogenetic sequence data to better integrate taxa into appropriate taxonomic ranks and infer their evolutionary relationships.
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Affiliation(s)
- Saranyaphat Boonmee
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100 Thailand
| | - Dhanushka N. Wanasinghe
- CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650201 Yunnan People’s Republic of China
- CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming, 650201 Yunnan People’s Republic of China
- Honghe Center for Mountain Futures, Kunming Institute of Botany, Honghe County, Kunming, 654400 Yunnan People’s Republic of China
| | - Mark S. Calabon
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100 Thailand
| | - Naruemon Huanraluek
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
| | - Sajini K. U. Chandrasiri
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100 Thailand
| | - Gareth E. B. Jones
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451 Saudi Arabia
| | - Walter Rossi
- Section Environmental Sciences, Department MeSVA, University of L’Aquila, 67100 Coppito, AQ Italy
| | - Marco Leonardi
- Section Environmental Sciences, Department MeSVA, University of L’Aquila, 67100 Coppito, AQ Italy
| | - Sanjay K. Singh
- National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology Group, MACS Agharkar Research Institute, G.G. Agarkar Road, Pune, 411 004 India
| | - Shiwali Rana
- National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology Group, MACS Agharkar Research Institute, G.G. Agarkar Road, Pune, 411 004 India
| | - Paras N. Singh
- National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology Group, MACS Agharkar Research Institute, G.G. Agarkar Road, Pune, 411 004 India
| | - Deepak K. Maurya
- National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology Group, MACS Agharkar Research Institute, G.G. Agarkar Road, Pune, 411 004 India
| | - Ajay C. Lagashetti
- National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology Group, MACS Agharkar Research Institute, G.G. Agarkar Road, Pune, 411 004 India
| | - Deepika Choudhary
- National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology Group, MACS Agharkar Research Institute, G.G. Agarkar Road, Pune, 411 004 India
| | - Yu-Cheng Dai
- Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, 100083 People’s Republic of China
| | - Chang-Lin Zhao
- College of Biodiversity Conservation, Southwest Forestry University, Kunming, 650224 People’s Republic of China
| | - Yan-Hong Mu
- CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110164 People’s Republic of China
- University of the Chinese Academy of Sciences, Beijing, 100049 People’s Republic of China
| | - Hai-Sheng Yuan
- CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110164 People’s Republic of China
| | - Shuang-Hui He
- Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, 100083 People’s Republic of China
| | - Rungtiwa Phookamsak
- CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650201 Yunnan People’s Republic of China
- CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming, 650201 Yunnan People’s Republic of China
- Honghe Center for Mountain Futures, Kunming Institute of Botany, Honghe County, Kunming, 654400 Yunnan People’s Republic of China
- Centre for Mountain Futures (CMF), Kunming Institute of Botany, Kunming, 650201 Yunnan People’s Republic of China
| | - Hong-Bo Jiang
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650201 Yunnan People’s Republic of China
| | - María P. Martín
- Department of Mycology, Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - Margarita Dueñas
- Department of Mycology, Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - M. Teresa Telleria
- Department of Mycology, Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - Izabela L. Kałucka
- Department of Algology and Mycology, Faculty of Biology and Environmental Protection, University of Lodz, Banacha 12/16, 90-237 Łódź, Poland
| | | | - Kare Liimatainen
- Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, TW9 3DS Surrey UK
| | - Diana S. Pereira
- Faculdade de Ciências, Biosystems and Integrative Sciences Institute (BioISI), Universidade de Lisboa, Campo Grande, 1749-016 Lisbon, Portugal
| | - Alan J. L. Phillips
- Faculdade de Ciências, Biosystems and Integrative Sciences Institute (BioISI), Universidade de Lisboa, Campo Grande, 1749-016 Lisbon, Portugal
| | - Nakarin Suwannarach
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, 50200 Thailand
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai, 50200 Thailand
| | - Jaturong Kumla
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, 50200 Thailand
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai, 50200 Thailand
| | - Surapong Khuna
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, 50200 Thailand
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai, 50200 Thailand
| | - Saisamorn Lumyong
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, 50200 Thailand
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai, 50200 Thailand
- Academy of Science, The Royal Society of Thailand, 10300 Bangkok, Thailand
| | - Tarynn B. Potter
- Centre for Crop Health, University of Southern Queensland, Toowoomba, QLD 4350 Australia
| | - Roger G. Shivas
- Centre for Crop Health, University of Southern Queensland, Toowoomba, QLD 4350 Australia
- Department of Agriculture and Fisheries, Dutton Park, QLD 4102 Australia
| | - Adam H. Sparks
- Centre for Crop Health, University of Southern Queensland, Toowoomba, QLD 4350 Australia
- Department of Primary Industries and Regional Development, Bentley Delivery Centre, Locked Bag 4, Bentley, WA 6983 Australia
| | - Niloofar Vaghefi
- Centre for Crop Health, University of Southern Queensland, Toowoomba, QLD 4350 Australia
| | - Mohamed A. Abdel-Wahab
- Department of Botany and Microbiology, Faculty of Science, Sohag University, Sohag, 82524 Egypt
| | - Faten A. Abdel-Aziz
- Department of Botany and Microbiology, Faculty of Science, Sohag University, Sohag, 82524 Egypt
| | - Guo-Jie Li
- Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable, College of Horticulture, Hebei Agricultural University, No 2596 South Lekai Rd, Lianchi District, Baoding, 071001 Hebei China
| | - Wen-Fei Lin
- Institute of Edible and Medicinal Fungi, College of Life Science, Zhejiang University, 866 Yuhangtang Rd, Xihu District, Hangzhou, 310058 Zhejiang China
| | - Upendra Singh
- Department of Botany & Microbiology, HNB Garhwal University, Uttarakhand 246174 Srinagar, Garhwal, India
| | - Rajendra P. Bhatt
- Department of Botany & Microbiology, HNB Garhwal University, Uttarakhand 246174 Srinagar, Garhwal, India
| | - Hyang Burm Lee
- Environmental Microbiology Lab, Department of Agricultural Biological Chemistry, College of Agriculture & Life Sciences, Chonnam National University, Gwangju, 61186 Korea
| | - Thuong T. T. Nguyen
- Environmental Microbiology Lab, Department of Agricultural Biological Chemistry, College of Agriculture & Life Sciences, Chonnam National University, Gwangju, 61186 Korea
| | - Paul M. Kirk
- Biodiversity Informatics and Spatial Analysis, Royal Botanic Gardens Kew, Richmond, TW9 3DS Surrey UK
| | - Arun Kumar Dutta
- Department of Botany, West Bengal State University, North-24-Parganas, Barasat, West Bengal PIN- 700126 India
- Molecular and Applied Mycology and Plant Pathology Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, West Bengal 700019 India
| | - Krishnendu Acharya
- Molecular and Applied Mycology and Plant Pathology Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, West Bengal 700019 India
| | - V. Venkateswara Sarma
- Fungal Biotechnology Laboratory, Department of Biotechnology, Pondicherry University, Kalapet, Puducherry, 605014 India
| | - M. Niranjan
- Fungal Biotechnology Laboratory, Department of Biotechnology, Pondicherry University, Kalapet, Puducherry, 605014 India
- Department of Botany, Rajiv Gandhi University, Rono Hills, Doimukh, Itanagar, Arunachal Pradesh 791112 India
| | - Kunhiraman C. Rajeshkumar
- National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology Group, MACS Agharkar Research Institute, G.G. Agarkar Road, Pune, 411 004 India
| | - Nikhil Ashtekar
- National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology Group, MACS Agharkar Research Institute, G.G. Agarkar Road, Pune, 411 004 India
| | - Sneha Lad
- National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology Group, MACS Agharkar Research Institute, G.G. Agarkar Road, Pune, 411 004 India
| | - Nalin N. Wijayawardene
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, 655011 Yunnan People’s Republic of China
| | - Darbe J. Bhat
- Azad Housing Society, No. 128/1-J, Goa Velha, Curca, Goa India
| | - Rong-Ju Xu
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650201 Yunnan People’s Republic of China
| | - Subodini N. Wijesinghe
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100 Thailand
| | - Hong-Wei Shen
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- College of Agriculture and Biological Sciences, Dali University, Dali, 671003 People’s Republic of China
| | - Zong-Long Luo
- College of Agriculture and Biological Sciences, Dali University, Dali, 671003 People’s Republic of China
| | - Jing-Yi Zhang
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang, 550003 People’s Republic of China
| | - Phongeun Sysouphanthong
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- Biotechnology and Ecology Institute, Ministry of Agriculture and Forestry, P.O. Box: 811, Vientiane Capital, Lao People’s Democratic Republic
| | - Naritsada Thongklang
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100 Thailand
| | - Dan-Feng Bao
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- College of Agriculture and Biological Sciences, Dali University, Dali, 671003 People’s Republic of China
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai, 50200 Thailand
| | - Janith V. S. Aluthmuhandiram
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- Beijing Key Laboratory of Environment Friendly Management On Fruit Diseases and Pests in North China, Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097 People’s Republic of China
| | - Jafar Abdollahzadeh
- Department of Plant Protection, Agriculture Faculty, University of Kurdistan, P.O. Box 416, Sanandaj, Iran
| | - Alireza Javadi
- Department of Botany, Iranian Research Institute of Plant Protection, P.O. Box 1454, 19395 Tehran, Iran
| | | | - Muhammad Usman
- Fungal Biology and Systematics Research Laboratory, Department of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore, 54590 Pakistan
| | - Abdul Nasir Khalid
- Fungal Biology and Systematics Research Laboratory, Department of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore, 54590 Pakistan
| | - Asha J. Dissanayake
- School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 611731 People’s Republic of China
| | - Anusha Telagathoti
- Institute of Microbiology, University of Innsbruck, Technikerstrasse 25, 6020 Innsbruck, Austria
| | - Maraike Probst
- Institute of Microbiology, University of Innsbruck, Technikerstrasse 25, 6020 Innsbruck, Austria
| | - Ursula Peintner
- Institute of Microbiology, University of Innsbruck, Technikerstrasse 25, 6020 Innsbruck, Austria
| | - Isaac Garrido-Benavent
- Department of Botany and Geology (Fac. CC. Biológicas) & Institut Cavanilles de Biodiversitat I Biologia Evolutiva (ICBIBE), Universitat de València, C/ Dr. Moliner 50, Burjassot, 46100 València, Spain
| | - Lilla Bóna
- Department of Plant Physiology and Molecular Plant Biology, Eötvös Loránd University, Budapest, 1117 Hungary
| | - Zsolt Merényi
- Institute of Biochemistry, Synthetic and Systems Biology Unit, Biological Research Centre, Szeged, 6726 Hungary
| | | | - Bratek Zoltán
- Department of Plant Physiology and Molecular Plant Biology, Eötvös Loránd University, Budapest, 1117 Hungary
| | - J. Benjamin Stielow
- Centre of Expertise in Mycology of Radboud University Medical Centre/Canisius Wilhelmina Hospital, Nijmegen, The Netherlands
- Thermo Fisher Diagnostics, Specialty Diagnostics Group, Landsmeer, The Netherlands
| | - Ning Jiang
- The Key Laboratory for Silviculture and Conservation of the Ministry of Education, Beijing Forestry University, Beijing, 100083 People’s Republic of China
| | - Cheng-Ming Tian
- The Key Laboratory for Silviculture and Conservation of the Ministry of Education, Beijing Forestry University, Beijing, 100083 People’s Republic of China
| | - Esmaeil Shams
- Department of Plant Protection, College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran
| | - Farzaneh Dehghanizadeh
- Department of Agricultural Biotechnology, College of Agriculture Engineering, Isfahan University of Technology, Isfahan, Iran
| | - Adel Pordel
- Plant Protection Research Department, Baluchestan Agricultural and Natural Resources Research and Education Center, AREEO, Iranshahr, Iran
| | - Mohammad Javan-Nikkhah
- Department of Plant Protection, College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran
| | - Teodor T. Denchev
- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2 Gagarin St., 1113 Sofia, Bulgaria
| | - Cvetomir M. Denchev
- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2 Gagarin St., 1113 Sofia, Bulgaria
| | - Martin Kemler
- Evolution der Pflanzen und Pilze, Ruhr-Universität Bochum, ND 03, Universitätsstraße 150, 44801 Bochum, Germany
| | - Dominik Begerow
- Evolution der Pflanzen und Pilze, Ruhr-Universität Bochum, ND 03, Universitätsstraße 150, 44801 Bochum, Germany
| | - Chun-Ying Deng
- Guizhou Institute of Biology, Guizhou Academy of Sciences, Shanxi Road No. 1, Yunyan district, 550001 Guiyang, People’s Republic of China
| | | | - Tohir Bozorov
- Institute of Genetics and Plant Experimental Biology, Academy of Sciences of Republic of Uzbekistan, Yukori-Yuz, Kubray Ds, Tashkent, Uzbekistan 111226
| | - Tutigul Kholmuradova
- Laboratory of Mycology, Institute of Botany, Academy of Sciences of Republic of Uzbekistan, 32 Durmon Yuli Street, Tashkent, Uzbekistan 100125
| | - Yusufjon Gafforov
- Laboratory of Mycology, Institute of Botany, Academy of Sciences of Republic of Uzbekistan, 32 Durmon Yuli Street, Tashkent, Uzbekistan 100125
| | - Aziz Abdurazakov
- Laboratory of Mycology, Institute of Botany, Academy of Sciences of Republic of Uzbekistan, 32 Durmon Yuli Street, Tashkent, Uzbekistan 100125
- Department of Ecology and Botany, Faculty of Natural Sciences, Andijan State University, 12 University Street, Andijan, Uzbekistan 170100
| | - Jian-Chu Xu
- CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650201 Yunnan People’s Republic of China
- CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming, 650201 Yunnan People’s Republic of China
- Honghe Center for Mountain Futures, Kunming Institute of Botany, Honghe County, Kunming, 654400 Yunnan People’s Republic of China
- Centre for Mountain Futures (CMF), Kunming Institute of Botany, Kunming, 650201 Yunnan People’s Republic of China
| | - Peter E. Mortimer
- CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650201 Yunnan People’s Republic of China
- CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming, 650201 Yunnan People’s Republic of China
| | - Guang-Cong Ren
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- School of Science, Mae Fah Luang University, Chiang Rai, 57100 Thailand
| | - Rajesh Jeewon
- Department of Health Sciences, Faculty of Medicine and Health Sciences, University of Mauritius, Réduit, Republic of Mauritius
| | - Sajeewa S. N. Maharachchikumbura
- School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 611731 People’s Republic of China
| | - Chayanard Phukhamsakda
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, 130118 China
| | - Ausana Mapook
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
| | - Kevin D. Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand
- CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650201 Yunnan People’s Republic of China
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, 50200 Thailand
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai, 50200 Thailand
- Innovative Institute of Plant Health, Zhongkai University of Agriculture and Engineering, Haizhu District, Guangzhou, 510225 People’s Republic of China
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13
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Jiang HB, Phookamsak R, Hyde KD, Mortimer PE, Xu JC, Kakumyan P, Karunarathna SC, Kumla J. A Taxonomic Appraisal of Bambusicolous Fungi in Occultibambusaceae (Pleosporales, Dothideomycetes) with New Collections from Yunnan Province, China. Life (Basel) 2021; 11:932. [PMID: 34575081 PMCID: PMC8472670 DOI: 10.3390/life11090932] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Revised: 07/22/2021] [Accepted: 08/30/2021] [Indexed: 11/17/2022] Open
Abstract
During our ongoing studies of bambusicolous fungi in southwest China and Thailand, three saprobic pleosporalean taxa were discovered on bamboos in Yunnan Province of China. Occultibambusa hongheensis and Seriascoma bambusae spp. nov. are introduced based on morphological characteristics coupled with multi-locus phylogenetic analyses of combined LSU, SSU, TEF1-α, RPB2 and ITS sequence data. Occultibambusa kunmingensis is also reported from a terrestrial habitat for the first time. Comprehensive descriptions, color photo plates of micromorphology, and a phylogenetic tree showing the placements of these three taxa are provided. In addition, synopsis tables of Occultibambusa and Seriascoma with morphological features are also provided.
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Affiliation(s)
- Hong-Bo Jiang
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand;
- Centre for Mountain Futures (CMF), Kunming Institute of Botany, Kunming 650201, China; (R.P.); (P.E.M.); (J.-C.X.)
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand;
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand;
| | - Rungtiwa Phookamsak
- Centre for Mountain Futures (CMF), Kunming Institute of Botany, Kunming 650201, China; (R.P.); (P.E.M.); (J.-C.X.)
- CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming 650201, China
- Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe County 654400, China
- Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Kevin D. Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand;
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand;
- Innovative Institute for Plant Health, Zhongkai University of Agriculture and Engineering, Guangzhou 510000, China
| | - Peter E. Mortimer
- Centre for Mountain Futures (CMF), Kunming Institute of Botany, Kunming 650201, China; (R.P.); (P.E.M.); (J.-C.X.)
- Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe County 654400, China
- Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
| | - Jian-Chu Xu
- Centre for Mountain Futures (CMF), Kunming Institute of Botany, Kunming 650201, China; (R.P.); (P.E.M.); (J.-C.X.)
- CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming 650201, China
- Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe County 654400, China
| | - Pattana Kakumyan
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand;
| | - Samantha C. Karunarathna
- Centre for Mountain Futures (CMF), Kunming Institute of Botany, Kunming 650201, China; (R.P.); (P.E.M.); (J.-C.X.)
- CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming 650201, China
- Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe County 654400, China
- Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
| | - Jaturong Kumla
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand;
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
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14
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Valenzuela-Lopez N, Martin-Gomez MT, Los-Arcos I, Stchigel AM, Guarro J, Cano-Lira JF. A new pleosporalean fungus isolated from superficial to deep human clinical specimens. Med Mycol 2021; 59:278-288. [PMID: 32717745 DOI: 10.1093/mmy/myaa055] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2020] [Revised: 06/04/2020] [Accepted: 06/09/2020] [Indexed: 12/22/2022] Open
Abstract
Human infections by pleosporalean fungi (class Dothideomycetes, phylum Ascomycota) are rarely reported. Because their identification is challenging using morphological characterization, several phylogenetic markers must be sequenced for an accurate identification and taxonomical placement of the isolates. Three isolates of clinical origin were phenotypically characterized, but due to the absence of relevant morphological traits, D1-D2 domains of the 28S nrRNA gene (LSU), the internal transcribed spacer region (ITS) of the nrRNA, and fragments of the RNA polymerase II subunit 2 (rpb2) and translation elongation factor 1-alpha (tef1) genes were sequenced to allow a phylogenetic analysis that would solve their phylogenetic placement. That analysis revealed that these isolates did not match any previously known pleosporalean genera, and they are proposed here as the new fungal genus, Gambiomyces. Unfortunately, the isolates remained sterile, which, consequently, made the morphological description of the reproductive structures impossible. Future studies should try to understand the behaviour of this fungus in nature as well as its characteristics as an opportunistic fungal pathogen. Molecular identification is becoming an essential tool for proper identification of Dothideomycetes of clinical origin. LAY ABSTRACT We describe a new pleosporalen pathogenic fungus, Gambiomyces profunda, found in superficial to deep samples from a human patient. Because all strains remained sterile, the fungus was finally identified following a phylogenetic analysis by using four different molecular markers.
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Affiliation(s)
- Nicomedes Valenzuela-Lopez
- Universitat Rovira i Virgili, Medical School, Mycology Unit, and IISPV, C/ Sant Llorenç 21, 43201 Reus, Spain.,Unidad de Microbiología, Departamento de Tecnología Médica, Facultad de Ciencias de la Salud, Universidad de Antofagasta, Antofagasta, Chile
| | | | - Ibai Los-Arcos
- Infectious Diseases Department, Hospital Universitario Vall d'Hebron, Barcelona, Spain
| | - Alberto M Stchigel
- Universitat Rovira i Virgili, Medical School, Mycology Unit, and IISPV, C/ Sant Llorenç 21, 43201 Reus, Spain
| | - Josep Guarro
- Universitat Rovira i Virgili, Medical School, Mycology Unit, and IISPV, C/ Sant Llorenç 21, 43201 Reus, Spain
| | - José F Cano-Lira
- Universitat Rovira i Virgili, Medical School, Mycology Unit, and IISPV, C/ Sant Llorenç 21, 43201 Reus, Spain
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15
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Tennakoon DS, Kuo CH, Maharachchikumbura SSN, Thambugala KM, Gentekaki E, Phillips AJL, Bhat DJ, Wanasinghe DN, de Silva NI, Promputtha I, Hyde KD. Taxonomic and phylogenetic contributions to Celtis formosana, Ficus ampelas, F. septica, Macaranga tanarius and Morus australis leaf litter inhabiting microfungi. FUNGAL DIVERS 2021. [DOI: 10.1007/s13225-021-00474-w] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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16
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Konta S, Hyde KD, Karunarathna SC, Mapook A, Senwanna C, Dauner LAP, Nanayakkara CM, Xu J, Tibpromma S, Lumyong S. Multi-Gene Phylogeny and Morphology Reveal Haplohelminthosporium gen. nov. and Helminthosporiella gen. nov. Associated with Palms in Thailand and A Checklist for Helminthosporium Reported Worldwide. Life (Basel) 2021; 11:life11050454. [PMID: 34069619 PMCID: PMC8161214 DOI: 10.3390/life11050454] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 05/10/2021] [Accepted: 05/11/2021] [Indexed: 11/16/2022] Open
Abstract
Palms (Arecaceae) are substrates for a highly diverse range of fungi. Many species are known as saprobes and many are important plant pathogens. Over the course of our studies of micro-fungi from palms in Thailand, two new taxa were discovered. Morphological characteristics and phylogenetic analyses of combined ITS, LSU, SSU, and tef1-α sequence data revealed their taxonomic positions within Massarinaceae. There are currently ten genera identified and accepted in Massarinaceae, with the addition of the two new genera of Haplohelminthosporium and Helminthosporiella, that are introduced in this paper. Each new genus is provided with a full description and notes, and each new taxon is provided with an illustration for the holotype. A list of identified and accepted species of Helminthosporium with morphology, host information, locality, sequence data, and related references of Helminthosporium reported worldwide is provided based on records in Species Fungorum 2021. This work provides a micro-fungi database of Haplohelminthosporium, Helminthosporiella, and Helminthosporium which can be modified and validated as new data come to light.
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Affiliation(s)
- Sirinapa Konta
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; (S.K.); (K.D.H.); (S.C.K.); (L.A.P.D.); (J.X.)
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand;
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Kevin D. Hyde
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; (S.K.); (K.D.H.); (S.C.K.); (L.A.P.D.); (J.X.)
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand;
| | - Samantha C. Karunarathna
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; (S.K.); (K.D.H.); (S.C.K.); (L.A.P.D.); (J.X.)
| | - Ausana Mapook
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand;
| | - Chanokned Senwanna
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand;
| | - Lucas A. P. Dauner
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; (S.K.); (K.D.H.); (S.C.K.); (L.A.P.D.); (J.X.)
| | | | - Jianchu Xu
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; (S.K.); (K.D.H.); (S.C.K.); (L.A.P.D.); (J.X.)
| | - Saowaluck Tibpromma
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; (S.K.); (K.D.H.); (S.C.K.); (L.A.P.D.); (J.X.)
- Correspondence: (S.T.); (S.L.)
| | - Saisamorn Lumyong
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Academy of Science, The Royal Society of Thailand, Bangkok 10300, Thailand
- Correspondence: (S.T.); (S.L.)
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17
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Jiang HB, Jeewon R, Karunarathna SC, Phukhamsakda C, Doilom M, Kakumyan P, Suwannarach N, Phookamsak R, Lumyong S. Reappraisal of Immotthia in Dictyosporiaceae, Pleosporales: Introducing Immotthia bambusae sp. nov. and Pseudocyclothyriella clematidis comb. et gen. nov. Based on Morphology and Phylogeny. Front Microbiol 2021; 12:656235. [PMID: 34025611 PMCID: PMC8137994 DOI: 10.3389/fmicb.2021.656235] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Accepted: 03/22/2021] [Indexed: 11/13/2022] Open
Abstract
Immotthia is a poorly known genus, and currently, no DNA sequence data are available to ascertain its proper phylogenetic placement and evolutionary relationships with other bitunicate fungi. To date, there are only two species accepted in the genus. During our ongoing research study of bambusicolous fungi in southwest China and Thailand, a fungus associated with stromata of Hypoxylon sp. was found on dead bamboo culms in Loei Province, Thailand. Preliminary morphological identification revealed that the fungal collection belongs to Immotthia. A novel species, Immotthia bambusae, is introduced herein based on a comparison of morphological characteristics with the type specimen of I. hypoxylon (≡ Amphisphaeria hypoxylon Ellis and Everh.), a synonym of I. atrograna (Cooke and Ellis) M. E. Barr. Phylogenetic analyses of a concatenated ITS, LSU, SSU, and TEF1-α DNA sequence matrix showed that Immotthia belongs to Dictyosporiaceae, Pleosporales. Despite I. bambusae strains constituting a supported subclade, they are nested with the genus Pseudocoleophoma. Pseudocoleophoma clematidis is morphologically different from all other Pseudocoleophoma species, while its conidial characteristics are similar to Cyclothyriella. Multigene phylogenetic analyses showed that P. clematidis formed a clade basal to Immotthia, separated from Pseudocoleophoma with strong statistical support. Therefore, we introduce a monotypic genus, Pseudocyclothyriella Phukhams. and Phookamsak, gen. nov. to accommodate the single species, Pseudocyclothyriella clematidis (Phukhams. and K. D. Hyde) Phukhams. and Phookamsak, comb. nov. Detailed descriptions, color micrographs, and phylogenetic trees to show the placement of the new taxa are provided. In addition, an updated taxonomic treatment of the genera Immotthia and Pseudocyclothyriella is also provided based on the study of the type materials and phylogeny generated from DNA sequence data.
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Affiliation(s)
- Hong-Bo Jiang
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.,Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand.,School of Science, Mae Fah Luang University, Chiang Rai, Thailand
| | - Rajesh Jeewon
- Department of Health Sciences, Faculty of Medicine and Health Sciences, University of Mauritius, Réduit, Mauritius
| | - Samantha C Karunarathna
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.,Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Sciences, Chiang Mai University, Chiang Mai, Thailand.,CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming, China.,Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe, China.,Centre for Mountain Futures (CMF), Kunming Institute of Botany, Kunming, China
| | - Chayanard Phukhamsakda
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, China
| | - Mingkwan Doilom
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Sciences, Chiang Mai University, Chiang Mai, Thailand.,Innovative Institute of Plant Health, Zhongkai University of Agriculture and Engineering, Guangzhou, China
| | - Pattana Kakumyan
- School of Science, Mae Fah Luang University, Chiang Rai, Thailand
| | - Nakarin Suwannarach
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Sciences, Chiang Mai University, Chiang Mai, Thailand.,Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
| | - Rungtiwa Phookamsak
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.,Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Sciences, Chiang Mai University, Chiang Mai, Thailand.,CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming, China.,Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe, China.,Centre for Mountain Futures (CMF), Kunming Institute of Botany, Kunming, China
| | - Saisamorn Lumyong
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Sciences, Chiang Mai University, Chiang Mai, Thailand.,Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand.,Academy of Science, The Royal Society of Thailand, Bangkok, Thailand
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18
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Integrating Different Lines of Evidence to Establish a Novel Ascomycete Genus and Family ( Anastomitrabeculia, Anastomitrabeculiaceae) in Pleosporales. J Fungi (Basel) 2021; 7:jof7020094. [PMID: 33525387 PMCID: PMC7912389 DOI: 10.3390/jof7020094] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Revised: 01/20/2021] [Accepted: 01/21/2021] [Indexed: 11/17/2022] Open
Abstract
A novel genus, Anastomitrabeculia, is introduced herein for a distinct species, Anastomitrabeculia didymospora, collected as a saprobe on dead bamboo culms from a freshwater stream in Thailand. Anastomitrabeculia is distinct in its trabeculate pseudoparaphyses and ascospores with longitudinally striate wall ornamentation. A new family, Anastomitrabeculiaceae, is introduced to accommodate Anastomitrabeculia. Anastomitrabeculiaceae forms an independent lineage basal to Halojulellaceae in Pleosporales and it is closely related to Neohendersoniaceae based on phylogenetic analyses of a combined LSU, SSU and TEF1α dataset. In addition, divergence time estimates provide further support for the establishment of Anastomitrabeculiaceae. The family diverged around 84 million years ago (MYA) during the Cretaceous period, which supports the establishment of the new family. The crown and stem age of Anastomitrabeculiaceae was also compared to morphologically similar pleosporalean families.
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19
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Abstract
AbstractFreshwater Dothideomycetes are a highly diverse group of fungi, which are mostly saprobic in freshwater habitats worldwide. They are important decomposers of submerged woody debris and leaves in water. In this paper, we outline the genera of freshwater Dothideomycetes with notes and keys to species. Based on multigene analyses and morphology, we introduce nine new genera, viz. Aquimassariosphaeria, Aquatospora, Aquihelicascus, Fusiformiseptata, Neohelicascus, Neojahnula, Pseudojahnula, Purpureofaciens, Submersispora; 33 new species, viz. Acrocalymma bipolare, Aquimassariosphaeria kunmingensis, Aquatospora cylindrica, Aquihelicascus songkhlaensis, A. yunnanensis, Ascagilis submersa, A. thailandensis, Bambusicola aquatica, Caryospora submersa, Dictyocheirospora thailandica, Fusiformiseptata crocea, Helicosporium thailandense, Hongkongmyces aquaticus, Lentistoma aquaticum, Lentithecium kunmingense, Lindgomyces aquaticus, Longipedicellata aquatica, Neohelicascus submersus, Neohelicomyces dehongensis, N. thailandicus, Neohelicosporium submersum, Nigrograna aquatica, Occultibambusa kunmingensis, Parabambusicola aquatica, Pseudoasteromassaria aquatica, Pseudoastrosphaeriella aquatica, Pseudoxylomyces aquaticus, Purpureofaciens aquatica, Roussoella aquatica, Shrungabeeja aquatica, Submersispora variabilis, Tetraploa puzheheiensis, T. yunnanensis; 16 new combinations, viz. Aquimassariosphaeria typhicola, Aquihelicascus thalassioideus, Ascagilis guttulaspora, A. queenslandica, A. seychellensis, A. sunyatsenii, Ernakulamia xishuangbannaensis, Neohelicascus aquaticus, N. chiangraiensis, N. egyptiacus, N. elaterascus, N. gallicus, N. unilocularis, N. uniseptatus, Neojahnula australiensis, Pseudojahnula potamophila; 17 new geographical and habitat records, viz. Aliquandostipite khaoyaiensis, Aquastroma magniostiolata, Caryospora aquatica, C. quercus, Dendryphiella vinosa, Ernakulamia cochinensis, Fissuroma neoaggregatum, Helicotruncatum palmigenum, Jahnula rostrata, Neoroussoella bambusae, N. leucaenae, Occultibambusa pustula, Paramonodictys solitarius, Pleopunctum pseudoellipsoideum, Pseudocapulatispora longiappendiculata, Seriascoma didymosporum, Shrungabeeja vadirajensis and ten new collections from China and Thailand, viz. Amniculicola guttulata, Aquaphila albicans, Berkleasmium latisporum, Clohesyomyces aquaticus, Dictyocheirospora rotunda, Flabellascoma fusiforme, Pseudoastrosphaeriella bambusae, Pseudoxylomyces elegans, Tubeufia aquatica and T. cylindrothecia. Dendryphiella phitsanulokensis and Tubeufia roseohelicospora are synonymized with D. vinosa and T. tectonae, respectively. Six orders, 43 families and 145 genera which belong to freshwater Dothideomycetes are reviewed. Of these, 46 genera occur exclusively in freshwater habitats. A world map illustrates the distribution of freshwater Dothideomycetes.
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20
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Do mangrove habitats serve as a reservoir for Medicopsis romeroi, a clinically important fungus. Mycol Prog 2020. [DOI: 10.1007/s11557-020-01623-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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21
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Zhang JF, Liu JK(J, Thambugala KM, Yang J, Meng ZH, Liu ZY. Two new species and a new record of Nigrograna (Nigrogranaceae, Pleosporales) from China and Thailand. Mycol Prog 2020. [DOI: 10.1007/s11557-020-01633-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Das K, Lee SY, Jung HY. Morphology and Phylogeny of Two Novel Species within the Class Dothideomycetes Collected from Soil in Korea. MYCOBIOLOGY 2020; 49:15-23. [PMID: 33536809 PMCID: PMC7832580 DOI: 10.1080/12298093.2020.1838114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Revised: 10/08/2020] [Accepted: 10/13/2020] [Indexed: 06/12/2023]
Abstract
Two fungal strains (KNU-JJ-1827 and KNU-JJ-1829) belonging to the class Dothideomycetes were discovered from Jeju Island, Korea during this investigation of soil microfungi. Strain KNU-JJ-1827 showed fewer conidial septations, larger conidiogenous cells, and smaller conidia compared to the previously identified closest species of Didymocyrtis. Strain KNU-JJ-1829 revealed the similar characteristics of the nearest certain species of the genus Parathyridaria with the production of conidiogenous cells and conidia, because no asexual morphs were detected from the closest type strain Parathyridaria rosae. The novelty of the strains was also confirmed by analyzing molecular data using internal transcribed spacer regions and 28S rDNA. The molecular phylogeny also strongly support the detailed description and illustration for each proposed species as Didymocyrtis septata sp. nov. (KNU-JJ-1827) and Parathyridaria ellipsoidea sp. nov. (KNU-JJ-1829) isolated from soil in Korea.
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Affiliation(s)
- Kallol Das
- College of Agriculture and Life Sciences, Kyungpook National University, Daegu, Korea
| | - Seung-Yeol Lee
- College of Agriculture and Life Sciences, Kyungpook National University, Daegu, Korea
- Institute of Plant Medicine, Kyungpook National University, Daegu, Korea
| | - Hee-Young Jung
- College of Agriculture and Life Sciences, Kyungpook National University, Daegu, Korea
- Institute of Plant Medicine, Kyungpook National University, Daegu, Korea
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Species diversity of Pleosporalean taxa associated with Camellia sinensis (L.) Kuntze in Taiwan. Sci Rep 2020; 10:12762. [PMID: 32728102 PMCID: PMC7391694 DOI: 10.1038/s41598-020-69718-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 07/16/2020] [Indexed: 01/04/2023] Open
Abstract
Pleosporales species are important plant pathogens, saprobes, and endophytes on a wide range of economically important plant hosts. The classification of Pleosporales has undergone various modifications in recent years due to the addition of many families described from multiple habitats with a high level of morphological deviation. Numerous asexual genera have been described in Pleosporales that can be either hyphomyceteous or coelomycetous. Phoma- or coniothyrium-like species are common and have been revealed as polyphyletic in the order Pleosporales and linked with several sexual genera. A total of 31 pleosporalean strains were isolated in different regions of Taiwan between 2017 and 2018 from the leaves of Camellia sinensis plants with symptoms of leaf spot disease. These strains were evaluated morphologically and genotypically using multi-locus sequence analyses of the ITS, LSU, SSU, rpb2, tef1 and tub2 genes. The results demonstrated the affiliation of these strains with the various families in Pleosporales and revealed the presence of one new genus (Neoshiraia) and eight new species (Alloconiothyrium camelliae, Amorocoelophoma camelliae, Leucaenicola camelliae, L. taiwanensis, Neoshiraia camelliae, N. taiwanensis, Paraconiothyrium camelliae and Paraphaeosphaeria camelliae). Furthermore, to the best of our understanding, Didymella segeticola, Ectophoma pomi and Roussoella mexican were reported for the first time from C. sinensis in Taiwan.
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Wanasinghe DN, Wijayawardene NN, Xu J, Cheewangkoon R, Mortimer PE. Taxonomic novelties in Magnolia-associated pleosporalean fungi in the Kunming Botanical Gardens (Yunnan, China). PLoS One 2020; 15:e0235855. [PMID: 32658904 PMCID: PMC7357747 DOI: 10.1371/journal.pone.0235855] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Accepted: 06/22/2020] [Indexed: 11/24/2022] Open
Abstract
This paper represents the first article in a series on Yunnanese microfungi. We herein provide insights into Magnolia species associated with microfungi. All presented data are reported from the Kunming Botanical Gardens. Final conclusions were derived from the morphological examination of specimens coupled with phylogenetic sequence data to better integrate taxa into appropriate taxonomic ranks and infer their relationships. Shearia formosa, the type species of Shearia, lacks type material, and its phylogenetic position accordingly remains unresolved. A fresh collection of Shearia formosa, obtained from Magnolia denudata and M. soulangeana in China, therefore, designated a neotype for stabilizing the application of the species and/or genus name. Phylogenetic analyses of a combined DNA data matrix containing SSU, LSU, RPB2 and TEF loci of representative Pleosporales revealed that the genera Crassiperidium, Longiostiolum and Shearia are a well-defined monophylum. It is recognized as the family Longiostiolaceae and strongly supported by Bayesian and Maximum Likelihood methods. Its members are characterized by immersed to semi-immersed, globose to subglobose ascomata with a central, periphysate ostiole, a peridium composed of rectangular to polygonal cells, cylindrical to clavate asci, broadly fusiform, hyaline to pale brown ascospores, a coelomycetous asexual morph with pycnidial conidiomata, enteroblastic, annellidic, ampulliform, doliiform or cylindrical conidiogenous cells and cylindrical to fusiform, transverse and sometimes laterally distoseptate conidia without a sheath or with a basal lateral sheath. Nigrograna magnoliae sp. nov. is introduced from Magnolia denudata with both asexual and sexual morphs. We observed the asexual morph of Brunneofusispora sinensis from the culture and therefore amended the generic and species descriptions of Brunneofusispora.
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Affiliation(s)
- Dhanushka N. Wanasinghe
- CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming, Yunnan, China
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai, Thailand
- World Agroforestry, East and Central Asia, Kunming, Yunnan, China
- Center for Mountain Futures, Kunming Institute of Botany, Honghe County, Yunnan, China
| | - Nalin N. Wijayawardene
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan, China
| | - Jianchu Xu
- CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming, Yunnan, China
- World Agroforestry, East and Central Asia, Kunming, Yunnan, China
- Center for Mountain Futures, Kunming Institute of Botany, Honghe County, Yunnan, China
| | - Ratchadawan Cheewangkoon
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai, Thailand
- Innovative Agriculture Research Center, Faculty of Agriculture, Chiang Mai University, Chiang Mai, Thailand
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai, Thailand
- * E-mail: (RC); (PEM)
| | - Peter E. Mortimer
- CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming, Yunnan, China
- * E-mail: (RC); (PEM)
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25
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Phukhamsakda C, McKenzie EHC, Phillips AJL, Gareth Jones EB, Jayarama Bhat D, Stadler M, Bhunjun CS, Wanasinghe DN, Thongbai B, Camporesi E, Ertz D, Jayawardena RS, Perera RH, Ekanayake AH, Tibpromma S, Doilom M, Xu J, Hyde KD. Microfungi associated with Clematis (Ranunculaceae) with an integrated approach to delimiting species boundaries. FUNGAL DIVERS 2020. [DOI: 10.1007/s13225-020-00448-4] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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26
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Mapook A, Hyde KD, McKenzie EHC, Jones EBG, Bhat DJ, Jeewon R, Stadler M, Samarakoon MC, Malaithong M, Tanunchai B, Buscot F, Wubet T, Purahong W. Taxonomic and phylogenetic contributions to fungi associated with the invasive weed Chromolaena odorata (Siam weed). FUNGAL DIVERS 2020. [DOI: 10.1007/s13225-020-00444-8] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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27
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News from the Sea: A New Genus and Seven New Species in the Pleosporalean Families Roussoellaceae and Thyridariaceae. DIVERSITY-BASEL 2020. [DOI: 10.3390/d12040144] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Nineteen fungal strains associated with the seagrass Posidonia oceanica, with the green alga Flabellia petiolata, and the brown alga Padina pavonica were collected in the Mediterranean Sea. These strains were previously identified at the family level and hypothesised to be undescribed species. Strains were examined by deep multi-loci phylogenetic and morphological analyses. Maximum-likelihood and Bayesian phylogenies proved that Parathyridariella gen. nov. is a distinct genus in the family Thyriadriaceae. Analyses based on five genetic markers revealed seven new species: Neoroussoella lignicola sp. nov., Roussoella margidorensis sp. nov., R. mediterranea sp. nov., and R. padinae sp. nov. within the family Roussellaceae, and Parathyridaria flabelliae sp. nov., P. tyrrhenica sp. nov., and Parathyridariella dematiacea gen. nov. et sp. nov. within the family Thyridariaceae.
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Li J, Jeewon R, Mortimer PE, Doilom M, Phookamsak R, Promputtha I. Multigene phylogeny and taxonomy of Dendryphion hydei and Torula hydei spp. nov. from herbaceous litter in northern Thailand. PLoS One 2020; 15:e0228067. [PMID: 32023268 PMCID: PMC7001993 DOI: 10.1371/journal.pone.0228067] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Accepted: 01/06/2020] [Indexed: 11/19/2022] Open
Abstract
During our studies on asexual fungi colonizing herbaceous litter in northern Thailand, we discovered two new fungal species, viz. Dendryphion hydei and Torula hydei spp. nov. The latter are examined, and their morphological characters are described as well as their DNA sequences from ribosomal and protein coding genes are analysed to infer their phylogenetic relationships with extant fungi. Torula hydei is different from other similar Torula species in having tiny and catenate conidia. Dendryphion hydei can be distinguished from other similar Dendryphion species in having large conidiophores and subhyaline to pale olivaceous brown, 2-4(-5)-septate conidia. Multigene phylogenetic analyses of a combined LSU, SSU, TEF1-α, RPB2 and ITS DNA sequence dataset generated from maximum likelihood and Bayesian inference analyses indicate that T. hydei forms a distinct lineage and basal to T. fici. Dendryphion hydei forms a distinct lineage and basal to D. europaeum, D. comosum, D. aquaticum and D. fluminicola within Torulaceae (Pleosporales, Dothideomycetes).
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Affiliation(s)
- Junfu Li
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Center of Excellence in Bioresources for Agriculture, Industry and Medicine, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Key Laboratory of Biodiversity and Biogeography, Chinese Academy of Sciences, Kunming Institute of Botany, Kunming, P.R. China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
| | - Rajesh Jeewon
- Department of Health Sciences, Faculty of Science, University of Mauritius, Reduit, Mauritius
| | - Peter E. Mortimer
- Key Laboratory of Biodiversity and Biogeography, Chinese Academy of Sciences, Kunming Institute of Botany, Kunming, P.R. China
| | - Mingkwan Doilom
- Key Laboratory of Biodiversity and Biogeography, Chinese Academy of Sciences, Kunming Institute of Botany, Kunming, P.R. China
- World Agroforestry Centre, East and Central Asia, Kunming, P.R. China
| | - Rungtiwa Phookamsak
- Key Laboratory of Biodiversity and Biogeography, Chinese Academy of Sciences, Kunming Institute of Botany, Kunming, P.R. China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
- World Agroforestry Centre, East and Central Asia, Kunming, P.R. China
| | - Itthayakorn Promputtha
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Center of Excellence in Bioresources for Agriculture, Industry and Medicine, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
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29
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A new species of Alpestrisphaeria (Dothideomycetes) with monodictys-like anamorph and revision of three Monodictys species. Mycol Prog 2019. [DOI: 10.1007/s11557-019-01482-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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30
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Phookamsak R, Hyde KD, Jeewon R, Bhat DJ, Jones EBG, Maharachchikumbura SSN, Raspé O, Karunarathna SC, Wanasinghe DN, Hongsanan S, Doilom M, Tennakoon DS, Machado AR, Firmino AL, Ghosh A, Karunarathna A, Mešić A, Dutta AK, Thongbai B, Devadatha B, Norphanphoun C, Senwanna C, Wei D, Pem D, Ackah FK, Wang GN, Jiang HB, Madrid H, Lee HB, Goonasekara ID, Manawasinghe IS, Kušan I, Cano J, Gené J, Li J, Das K, Acharya K, Raj KNA, Latha KPD, Chethana KWT, He MQ, Dueñas M, Jadan M, Martín MP, Samarakoon MC, Dayarathne MC, Raza M, Park MS, Telleria MT, Chaiwan N, Matočec N, de Silva NI, Pereira OL, Singh PN, Manimohan P, Uniyal P, Shang QJ, Bhatt RP, Perera RH, Alvarenga RLM, Nogal-Prata S, Singh SK, Vadthanarat S, Oh SY, Huang SK, Rana S, Konta S, Paloi S, Jayasiri SC, Jeon SJ, Mehmood T, Gibertoni TB, Nguyen TTT, Singh U, Thiyagaraja V, Sarma VV, Dong W, Yu XD, Lu YZ, Lim YW, Chen Y, Tkalčec Z, Zhang ZF, Luo ZL, Daranagama DA, Thambugala KM, Tibpromma S, Camporesi E, Bulgakov TS, Dissanayake AJ, Senanayake IC, Dai DQ, Tang LZ, Khan S, Zhang H, Promputtha I, Cai L, Chomnunti P, Zhao RL, Lumyong S, Boonmee S, Wen TC, Mortimer PE, Xu J. Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00421-w] [Citation(s) in RCA: 62] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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31
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Jiang HB, Hyde KD, Jayawardena RS, Doilom M, Xu J, Phookamsak R. Taxonomic and phylogenetic characterizations reveal two new species and two new records of Roussoella (Roussoellaceae, Pleosporales) from Yunnan, China. Mycol Prog 2019. [DOI: 10.1007/s11557-019-01471-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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32
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Yang CL, Xu XL, Wanasinghe DN, Jeewon R, Phookamsak R, Liu YG, Liu LJ, Hyde KD. Neostagonosporellasichuanensis gen. et sp. nov. (Phaeosphaeriaceae, Pleosporales) on Phyllostachysheteroclada (Poaceae) from Sichuan Province, China. MycoKeys 2019:119-150. [PMID: 30814907 PMCID: PMC6389646 DOI: 10.3897/mycokeys.46.32458] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2019] [Accepted: 02/05/2019] [Indexed: 01/12/2023] Open
Abstract
Neostagonosporellasichuanensis sp. nov. was found on Phyllostachysheteroclada collected from Sichuan Province in China and is introduced in a new genus Neostagonosporella gen. nov. in this paper. Evidence for the placement of the new taxon in the family Phaeosphaeriaceae is supported by morphology and phylogenetic analysis of a combined LSU, SSU, ITS and TEF 1-α DNA sequence dataset. Maximum-likelihood, maximum-parsimony and Bayesian inference phylogenetic analyses support Neostagonosporella as a distinct genus within this family. The new genus is compared with related genera of Phaeosphaeriaceae and full descriptions and illustrations are provided. Neostagonosporella is characterised by its unique suite of characters, such as multiloculate ascostromata and cylindrical to fusiform, transversely multiseptate, straight or curved ascospores, which are widest at the central cells. Conidiostromata are multiloculate, fusiform to long fusiform or rhomboid, with two types conidia; macroconidia vermiform or subcylindrical to cylindrical, transversely multiseptate, sometimes curved, almost equidistant between septa and microconidia oval, ellipsoidal or long ellipsoidal, aseptate, rounded at both ends. An updated phylogeny of the Phaeosphaeriaceae based on multigene analysis is provided.
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Affiliation(s)
- Chun-Lin Yang
- College of Forestry, Sichuan Agricultural University, Wenjiang District, Huiming Road 211, Chengdu 611130, Sichuan, China Sichuan Agricultural University Chengdu China.,Forestry Research Institute, Chengdu Academy of Agricultural and Forestry Sciences, Nongke Road 200, Chengdu 611130, Sichuan, China Mae Fah Luang University Chiang Rai Thailand.,Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand Forestry Research Institute, Chengdu Academy of Agricultural and Forestry Sciences Chengdu China.,Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 649201, Yunnan, China Kunming Institute of Botany, Chinese Academy of Science Kunming China.,Department of Health Sciences, Faculty of Science, University of Mauritius, Reduit, Mauritius University of Mauritius Reduit Mauritius
| | - Xiu-Lan Xu
- College of Forestry, Sichuan Agricultural University, Wenjiang District, Huiming Road 211, Chengdu 611130, Sichuan, China Sichuan Agricultural University Chengdu China.,Forestry Research Institute, Chengdu Academy of Agricultural and Forestry Sciences, Nongke Road 200, Chengdu 611130, Sichuan, China Mae Fah Luang University Chiang Rai Thailand
| | - Dhanushka N Wanasinghe
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand Forestry Research Institute, Chengdu Academy of Agricultural and Forestry Sciences Chengdu China.,Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 649201, Yunnan, China Kunming Institute of Botany, Chinese Academy of Science Kunming China
| | - Rajesh Jeewon
- Department of Health Sciences, Faculty of Science, University of Mauritius, Reduit, Mauritius University of Mauritius Reduit Mauritius
| | - Rungtiwa Phookamsak
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand Forestry Research Institute, Chengdu Academy of Agricultural and Forestry Sciences Chengdu China.,Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 649201, Yunnan, China Kunming Institute of Botany, Chinese Academy of Science Kunming China
| | - Ying-Gao Liu
- College of Forestry, Sichuan Agricultural University, Wenjiang District, Huiming Road 211, Chengdu 611130, Sichuan, China Sichuan Agricultural University Chengdu China
| | - Li-Juan Liu
- College of Forestry, Sichuan Agricultural University, Wenjiang District, Huiming Road 211, Chengdu 611130, Sichuan, China Sichuan Agricultural University Chengdu China
| | - Kevin D Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand Forestry Research Institute, Chengdu Academy of Agricultural and Forestry Sciences Chengdu China
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33
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van de Sande W, Fahal A, Ahmed SA, Serrano JA, Bonifaz A, Zijlstra E. Closing the mycetoma knowledge gap. Med Mycol 2018; 56:153-164. [PMID: 28992217 DOI: 10.1093/mmy/myx061] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2017] [Accepted: 07/14/2017] [Indexed: 12/13/2022] Open
Abstract
On 28th May 2016, mycetoma was recognized as a neglected tropical disease by the World Health Organization. This was the result of a 4-year journey starting in February 2013 with a meeting of global mycetoma experts. Knowledge gaps were identified and included the incidence, prevalence, and mapping of mycetoma; the mode of transmission; the development of methods for early diagnosis; and better treatment. In this review, we review the road to recognition, the ISHAM working group meeting in Argentina, and we address the progress made in closing the knowledge gaps since 2013. Progress included adding another 9000 patients to the literature, which allowed us to update the prevalence map on mycetoma. Furthermore, based on molecular phylogeny, species names were corrected and four novel mycetoma causative agents were identified. By mapping mycetoma causative agents an association with Acacia trees was found. For early diagnosis, three different isothermal amplification techniques were developed, and novel antigens were discovered. To develop better treatment strategies for mycetoma patients, in vitro susceptibility tests for the coelomycete agents of black grain mycetoma were developed, and the first randomized clinical trial for eumycetoma started early 2017.
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Affiliation(s)
- Wendy van de Sande
- ErasmusMC, Department of Medical Microbiology and Infectious Diseases, Wytemaweg 80, 3015 CE, Rotterdam, The Netherlands
| | - Ahmed Fahal
- Mycetoma Research Centre, University of Khartoum, Khartoum, Sudan
| | | | | | - Alexandro Bonifaz
- General Hospital of Mexico, Department of Mycology, Dermatology Service, Mexico City, Mexico
| | - Ed Zijlstra
- Rotterdam Centre for Tropical Medicine, Rotterdam, The Netherlands
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34
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35
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Zhang SN, Hyde KD, Gareth Jones EB, Cheewangkoon R, Liu JK(J. Acuminatispora palmarum gen. et sp. nov. from mangrove habitats. Mycol Prog 2018. [DOI: 10.1007/s11557-018-1433-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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36
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Ariyawansa HA, Jaklitsch WM, Voglmayr H. Additions to Taiwan Fungal Flora 1: Neomassariaceae fam. nov. CRYPTOGAMIE MYCOL 2018. [DOI: 10.7872/crym/v39.iss3.2018.359] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Hiran A. Ariyawansa
- Department of Plant Pathology and Microbiology, College of Bio-Resources and Agriculture, National Taiwan University, Taiwan
| | - Walter M. Jaklitsch
- Department of Systematic and Evolutionary Botany, Faculty Centre of Biodiversity, University of Vienna, Rennweg 14, 1030, Wien, Austria
- Institute of Forest Entomology, Forest Pathology and Forest Protection, Dept. of Forest and Soil Sciences, BOKU-University of Natural Resources and Life Sciences, Franz Schwackhöfer Haus, Peter-Jordan-Straße 82/I, 1190 Wien, Austria
| | - Hermann Voglmayr
- Department of Systematic and Evolutionary Botany, Faculty Centre of Biodiversity, University of Vienna, Rennweg 14, 1030, Wien, Austria
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37
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Ariyawansa HA, Phillips AJL, Chuang WY, Tsai I. Tzeananiaceae, a new pleosporalean family associated with Ophiocordycepsmacroacicularis fruiting bodies in Taiwan. MycoKeys 2018:1-17. [PMID: 30100794 PMCID: PMC6072833 DOI: 10.3897/mycokeys.37.27265] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Accepted: 07/13/2018] [Indexed: 12/03/2022] Open
Abstract
The order Pleosporales comprises a miscellaneous group of fungi and is considered to be the largest order of the class Dothideomycetes. The circumscription of Pleosporales has undergone numerous changes in recent years due to the addition of large numbers of families reported from various habitats and with a large amount of morphological variation. Many asexual genera have been reported in Pleosporales and can be either hyphomycetes or coelomycetes. Phoma-like taxa are common and have been shown to be polyphyletic within the order and allied with several sexual genera. During the exploration of biodiversity of pleosporalean fungi in Taiwan, a fungal strain was isolated from mycelium growing on the fruiting body of an Ophiocordyceps species. Fruiting structures that developed on PDA were morphologically similar to Phoma and its relatives in having pycnidial conidiomata with hyaline conidia. The fungus is characterised by holoblastic, cylindrical, aseptate conidiogenous cells and cylindrical, hyaline, aseptate, guttulated, thin-walled conidia. Phylogenetic analysis based on six genes, ITS, LSU, rpb2, SSU, tef1 and tub2, produced a phylogenetic tree with the newly generated sequences grouping in a distinct clade separate from all of the known families. Therefore, a new pleosporalean family Tzeananiaceae is established to accommodate the monotypic genus Tzeanania and the species T.taiwanensis in Pleosporales, Dothideomycetes. The Ophiocordyceps species was identified as O.macroacicularis and this is a new record in Taiwan.
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Affiliation(s)
- Hiran A Ariyawansa
- Department of Plant Pathology and Microbiology, College of Bio-Resources and Agriculture, National Taiwan University, Taiwan National Taiwan University Taipei Taiwan
| | - Alan J L Phillips
- Universidade de Lisboa, Faculdade de Ciências, Biosystems and Integrative Sciences Institute (BioISI), Campo Grande, 1749-016 Lisbon, Portugal Universidade de Lisboa Lisbon Portugal
| | - Wei-Yu Chuang
- Department of Plant Pathology and Microbiology, College of Bio-Resources and Agriculture, National Taiwan University, Taiwan National Taiwan University Taipei Taiwan
| | - Ichen Tsai
- Department of Plant Pathology and Microbiology, College of Bio-Resources and Agriculture, National Taiwan University, Taiwan National Taiwan University Taipei Taiwan
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38
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Crous P, Schumacher R, Wingfield M, Akulov A, Denman S, Roux J, Braun U, Burgess T, Carnegie A, Váczy K, Guatimosim E, Schwartsburd P, Barreto R, Hernández-Restrepo M, Lombard L, Groenewald J. New and Interesting Fungi. 1. Fungal Syst Evol 2018; 1:169-216. [PMID: 32490366 PMCID: PMC7259438 DOI: 10.3114/fuse.2018.01.08] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
This study introduces two new families, one new genus, 22 new species, 10 new combinations, four epitypes, and 16 interesting new host and / or geographical records. Cylindriaceae (based on Cylindrium elongatum) is introduced as new family, with three new combinations. Xyladictyochaetaceae (based on Xyladictyochaeta lusitanica) is introduced to accommodate Xyladictyochaeta. Pseudoanungitea gen. nov. (based on P. syzygii) is described on stems of Vaccinium myrtillus (Germany). New species include: Exophiala eucalypticola on Eucalyptus obliqua leaf litter, Phyllosticta hakeicola on leaves of Hakea sp., Setophaeosphaeria citricola on leaves of Citrus australasica, and Sirastachys cyperacearum on leaves of Cyperaceae (Australia); Polyscytalum chilense on leaves of Eucalyptus urophylla (Chile); Pseudoanungitea vaccinii on Vaccinium myrtillus (Germany); Teichospora quercus on branch tissue of Quercus sp. (France); Fusiconidium lycopodiellae on stems of Lycopodiella inundata, Monochaetia junipericola on twig of Juniperus communis, Myrmecridium sorbicola on branch tissues of Sorbus aucuparia, Parathyridaria philadelphi on twigs of Philadelphus coronarius, and Wettsteinina philadelphi on twigs of Philadelphus coronarius (Germany); Zygosporium pseudogibbum on leaves of Eucalyptus pellita (Malaysia); Pseudoanungitea variabilis on dead wood (Spain); Alfaria acaciae on leaves of Acacia propinqua, Dictyochaeta mimusopis on leaves of Mimusops caffra, and Pseudocercospora breonadiae on leaves of Breonadia microcephala (South Africa); Colletotrichum kniphofiae on leaves of Kniphofia uvaria, Subplenodomus iridicola on Iris sp., and Trochila viburnicola on twig cankers on Viburnum sp. (UK); Polyscytalum neofecundissimum on Quercus robur leaf litter, and Roussoella euonymi on fallen branches of Euonymus europaeus (Ukraine). New combinations include: Cylindrium algarvense on leaves of Eucalyptus sp. (Portugal), Cylindrium purgamentum on leaf litter (USA), Cylindrium syzygii on leaves of Syzygium sp. (Australia), Microdochium musae on leaves of Musa sp. (Malaysia), Polyscytalum eucalyptigenum on Eucalyptus grandis × pellita (Malaysia), P. eucalyptorum on leaves of Eucalyptus (Australia), P. grevilleae on leaves of Grevillea (Australia), P. nullicananum on leaves of Eucalyptus (Australia), Pseudoanungitea syzygii on Syzygium cordatum leaf litter (South Africa), and Setophaeosphaeria sidae on leaves of Sida sp. (Brazil). New records include: Sphaerellopsis paraphysata on leaves of Phragmites sp., Vermiculariopsiella dichapetali on leaves of Melaleuca sp. and Eucalyptus regnans, and Xyladictyochaeta lusitanica on leaf litter of Eucalyptus sp. (Australia); Camarosporidiella mackenziei on twigs of Caragana sp. (Finland); Cyclothyriella rubronotata on twigs of Ailanthus altissima, Rhinocladiella quercus on Sorbus aucuparia branches (Germany); Cytospora viticola on stems of Vitis vinifera (Hungary); Echinocatena arthrinioides on leaves of Acacia crassicarpa (Malaysia); Varicosporellopsis aquatilis from garden soil (Netherlands); Pestalotiopsis hollandica on needles of Cupressus sempervirens (Spain), Pseudocamarosporium africanum on twigs of Erica sp. (South Africa), Pseudocamarosporium brabeji on branch of Platanus sp. (Switzerland); Neocucurbitaria cava on leaves of Quercus ilex (UK); Chaetosphaeria myriocarpa on decaying wood of Carpinus betulus, Haplograhium delicatum on decaying Carpinus betulus wood (Ukraine). Epitypes are designated for: Elsinoë mimosae on leaves of Mimosa diplotricha (Brazil), Neohendersonia kickxii on Fagus sylvatica twig bark (Italy), Caliciopsis maxima on fronds of Niphidium crassifolium (Brazil), Dictyochaeta septata on leaves of Eucalyptus grandis × urophylla (Chile), and Microdochium musae on leaves of Musa sp. (Malaysia).
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Affiliation(s)
- P.W. Crous
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
- Department of Genetics, Biochemistry and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0002, South Africa
- Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
| | | | - M.J. Wingfield
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0002, South Africa
| | - A. Akulov
- Department of Mycology and Plant Resistance, V. N. Karazin Kharkiv National University, Maidan Svobody 4, 61022 Kharkiv, Ukraine
| | - S. Denman
- Forest Research, Alice Holt Lodge, Farnham, Surrey, UK
| | - J. Roux
- Department of Genetics, Biochemistry and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0002, South Africa
| | - U. Braun
- Martin-Luther-Universität, Institut für Biologie, Bereich Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, 06099 Halle (Saale), Germany
| | - T.I. Burgess
- Centre for Phytophthora Science and Management, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - A.J. Carnegie
- Forest Health & Biosecurity, NSW Department of Primary Industries, Level 12, 10 Valentine Ave, Parramatta NSW 2150, Locked Bag 5123, Parramatta NSW 2124, Australia
| | - K.Z. Váczy
- Centre for Research and Development, Eszterházy Károly University, H-3300 Eger, Hungary
| | - E. Guatimosim
- Instituto de Ciências Biológicas, Universidade Federal do Rio Grande, CEP: 96170-000, São Lourenço do Sul, Brazil
| | - P.B. Schwartsburd
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, CEP: 36.570-900, Viçosa, Minas Gerais, Brazil
| | - R.W. Barreto
- Departamento de Fitopatologia, Universidade Federal de Viçosa, CEP: 36.570-900, Viçosa, Minas Gerais, Brazil
| | - M. Hernández-Restrepo
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - L. Lombard
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - J.Z. Groenewald
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
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Liu NG, Lin CG, Liu JK, Samarakoon MC, Hongsanan S, Bhat DJ, Hyde KD, McKenzie EHC, Jumpathong J. Lentimurisporaceae, a New Pleosporalean Family with Divergence Times Estimates. CRYPTOGAMIE MYCOL 2018. [DOI: 10.7872/crym/v39.iss2.2018.259] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Ning-Guo Liu
- Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultral Sciences, Guiyang 550006, China
- Faculty of Agriculture, Natural Resources and Envinonment, Naresuan University, Phitsanulok 65000, Thailand
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Chuan-Gen Lin
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Jian-Kui Liu
- Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultral Sciences, Guiyang 550006, China
| | - Milan C. Samarakoon
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Sinang Hongsanan
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - D. Jayarama Bhat
- Azad Housing Society, No. 128/1-J, Curca, P.O. Goa Velha 403108, India
| | - Kevin D. Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | | | - Juangjun Jumpathong
- Faculty of Agriculture, Natural Resources and Envinonment, Naresuan University, Phitsanulok 65000, Thailand
- Center for Agricultural Biotechnology, Naresuan University, Phitsanulok, 65000, Thailand
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Devadatha B, Sarma VV, Jeewon R, Wanasinghe DN, Hyde KD, Gareth Jones EB. Thyridariella, a novel marine fungal genus from India: morphological characterization and phylogeny inferred from multigene DNA sequence analyses. Mycol Prog 2018. [DOI: 10.1007/s11557-018-1387-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Su XJ, Luo ZL, Jeewon R, Bhat DJ, Bao DF, Li WL, Hao YE, Su HY, Hyde KD. Morphology and multigene phylogeny reveal new genus and species of Torulaceae from freshwater habitats in northwestern Yunnan, China. Mycol Prog 2018. [DOI: 10.1007/s11557-018-1388-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae. FUNGAL DIVERS 2018. [DOI: 10.1007/s13225-018-0395-7] [Citation(s) in RCA: 107] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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Nigrograna mackinnonii, Not Trematosphaeria grisea (syn., Madurella grisea), Is the Main Agent of Black Grain Eumycetoma in Latin America. J Clin Microbiol 2018; 56:JCM.01723-17. [PMID: 29263207 DOI: 10.1128/jcm.01723-17] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Accepted: 12/08/2017] [Indexed: 11/20/2022] Open
Abstract
Mycetoma, a chronic and mutilating subcutaneous infection recognized by the WHO as a neglected tropical disease, has been reported in >25 countries in Africa, Asia, and South America. In Latin America, Trematosphaeria grisea is assumed to be the prevalent fungal agent. Recent molecular studies have shown that this is an environmental saprobe in Europe, where it is rarely implicated in human diseases. The aim of the present paper is to establish the identity of Latin American cases ascribed to Trematosphaeria grisea Three cases analyzed were caused by Nigrograna mackinnonii Data on an additional 21 strains in the literature revealed that N. mackinnonii rather than T. grisea is responsible for most cases of black grain eumycetoma in Latin America.
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Hyde KD, Norphanphoun C, Abreu VP, Bazzicalupo A, Thilini Chethana KW, Clericuzio M, Dayarathne MC, Dissanayake AJ, Ekanayaka AH, He MQ, Hongsanan S, Huang SK, Jayasiri SC, Jayawardena RS, Karunarathna A, Konta S, Kušan I, Lee H, Li J, Lin CG, Liu NG, Lu YZ, Luo ZL, Manawasinghe IS, Mapook A, Perera RH, Phookamsak R, Phukhamsakda C, Siedlecki I, Soares AM, Tennakoon DS, Tian Q, Tibpromma S, Wanasinghe DN, Xiao YP, Yang J, Zeng XY, Abdel-Aziz FA, Li WJ, Senanayake IC, Shang QJ, Daranagama DA, de Silva NI, Thambugala KM, Abdel-Wahab MA, Bahkali AH, Berbee ML, Boonmee S, Bhat DJ, Bulgakov TS, Buyck B, Camporesi E, Castañeda-Ruiz RF, Chomnunti P, Doilom M, Dovana F, Gibertoni TB, Jadan M, Jeewon R, Jones EBG, Kang JC, Karunarathna SC, Lim YW, Liu JK, Liu ZY, Plautz HL, Lumyong S, Maharachchikumbura SSN, Matočec N, McKenzie EHC, Mešić A, Miller D, Pawłowska J, Pereira OL, Promputtha I, Romero AI, Ryvarden L, Su HY, Suetrong S, Tkalčec Z, Vizzini A, Wen TC, Wisitrassameewong K, Wrzosek M, Xu JC, Zhao Q, Zhao RL, Mortimer PE. Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species. FUNGAL DIVERS 2017. [DOI: 10.1007/s13225-017-0391-3] [Citation(s) in RCA: 112] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Jaklitsch WM, Checa J, Blanco MN, Olariaga I, Tello S, Voglmayr H. A preliminary account of the Cucurbitariaceae. Stud Mycol 2017; 90:71-118. [PMID: 29276320 PMCID: PMC5738211 DOI: 10.1016/j.simyco.2017.11.002] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
Abstract
Fresh collections, type studies and molecular phylogenetic analyses of a multigene matrix of partial nuSSU-ITS-LSU rDNA, rpb2, tef1 and tub2 sequences were used to evaluate the boundaries of Cucurbitaria in a strict sense and of several related genera of the Cucurbitariaceae. Two species are recognised in Cucurbitaria and 19 in Neocucurbitaria. The monotypic genera Astragalicola, Cucitella, Parafenestella, Protofenestella, and Seltsamia are described as new. Fenestella is here included as its generic type F. fenestrata (= F. princeps), which is lecto- and epitypified. Fenestella mackenzei and F. ostryae are combined in Parafenestella. Asexual morphs of Cucurbitariaceae, where known, are all pyrenochaeta- or phoma-like. Comparison of the phylogenetic analyses of the ITS-LSU and combined matrices demonstrate that at least rpb2 sequences should be added whenever possible to improve phylogenetic resolution of the tree backbone; in addition, the tef1 introns should be added as well to improve delimitation of closely related species.
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Affiliation(s)
- W M Jaklitsch
- Institute of Forest Entomology, Forest Pathology and Forest Protection, Department of Forest and Soil Sciences, BOKU-University of Natural Resources and Life Sciences, Peter-Jordan-Straße 82/I, 1190 Wien, Austria.,Division of Systematic and Evolutionary Botany, Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, 1030 Wien, Austria
| | - J Checa
- Dpto. de Ciencias de la Vida, Facultad de Biología, Universidad de Alcalá, Alcalá de Henares, 28805 Madrid, Spain
| | - M N Blanco
- Dpto. de Ciencias de la Vida, Facultad de Biología, Universidad de Alcalá, Alcalá de Henares, 28805 Madrid, Spain
| | - I Olariaga
- Biochemistry and Molecular Biology, Universidad del País Vasco/Euskal Herriko Unibertsitatea, Leioa, Spain
| | - S Tello
- Paseo del Obispo 7, 23150 Valdepeñas de Jaén, Jaén, Spain
| | - H Voglmayr
- Division of Systematic and Evolutionary Botany, Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, 1030 Wien, Austria
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Abstract
The taxonomy of the coelomycetes has undergone dramatic changes in recent years, but remains controversial due to the high number of taxa involved, their poor morphological differentiation, the rare occurrence of the sexual morphs, and rapid loss of fertility in vitro. In the present study, we revisited the families Cucurbitariaceae and Didymellaceae (Pleosporales, Dothideomycetes), which include numerous plant pathogens, endophytic species associated with a wide host range, and saprobes. The taxonomy of two of the most relevant genera, i.e. Phoma and Pyrenochaeta, remains ambiguous after several phylogenetic studies, and needs further revision. We have studied a total of 143 strains of coelomycetes from clinical or environmental origin, by combining the LSU, ITS, tub2 and rpb2 sequences for a multi-locus analysis and a detailed morphological comparison. The resulting phylogenetic tree revealed that some fungi previously considered as members of Cucurbitariaceae represented five different families, and four of them, Neopyrenochaetaceae, Parapyrenochaetaceae, Pseudopyrenochaetaceae and Pyrenochaetopsidaceae, are proposed here as new. Furthermore, 13 new genera, 28 new species, and 20 new combinations are proposed within the Pleosporineae. Moreover, four new typifications are introduced to stabilise the taxonomy of these fungi.
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Key Words
- Allocucurbitaria Valenzuela-Lopez, Stchigel, Guarro & Cano
- Allocucurbitaria botulispora Valenzuela-Lopez, Stchigel, Guarro & Cano
- Allophoma cylindrispora Valenzuela-Lopez, Cano, Guarro & Stchigel
- Cu. pneumoniae Valenzuela-Lopez, Stchigel, Crous, Guarro & Cano
- Cucurbitariaceae
- Cumuliphoma Valenzuela-Lopez, Stchigel, Crous, Guarro & Cano
- Cumuliphoma indica Valenzuela-Lopez, Cano, Crous, Guarro & Stchigel
- Cumuliphoma omnivirens (Aveskamp et al.) Valenzuela-Lopez, Stchigel, Crous, Guarro & Cano
- D. keratinophila Valenzuela-Lopez, Cano, Guarro & Stchigel
- Didymella brunneospora Valenzuela-Lopez, Cano, Crous, Guarro & Stchigel
- Didymellaceae
- Ec. pomi (Horne) Valenzuela-Lopez, Cano, Crous, Guarro & Stchigel
- Ectophoma Valenzuela-Lopez, Cano, Crous, Guarro & Stchigel
- Ectophoma multirostrata (P.N. Mathur et al.) Valenzuela-Lopez, Cano, Crous, Guarro & Stchigel
- Ep. keratinophilum Valenzuela-Lopez, Cano, Guarro & Stchigel
- Ep. ovisporum Valenzuela-Lopez, Stchigel, Crous, Guarro & Cano
- Ep. pneumoniae Valenzuela-Lopez, Stchigel, Guarro & Cano
- Epicoccum catenisporum Valenzuela-Lopez, Stchigel, Crous, Guarro & Cano
- Epicoccum proteae (Crous) Valenzuela-Lopez, Stchigel, Crous, Guarro & Cano
- Juxtiphoma Valenzuela-Lopez, Cano, Crous, Guarro & Stchigel
- Juxtiphoma eupyrena (Sacc.) Valenzuela-Lopez, Cano, Crous, Guarro & Stchigel
- Multigene phylogeny
- Neoa. tardicrescens Valenzuela-Lopez, Cano, Crous, Guarro & Stchigel
- Neoascochyta cylindrispora Valenzuela-Lopez, Cano, Guarro & Stchigel
- Neocu. hakeae (Crous) Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Neocu. irregularis Valenzuela-Lopez, Cano, Guarro & Stchigel
- Neocu. keratinophila (Verkley et al.) Valenzuela-Lopez, Stchigel, Guarro & Cano
- Neocucurbitaria aquatica Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Neocucurbitaria cava (Schulzer) Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Neopy. inflorescentiae (Crous et al.) Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Neopy. telephoni (Rohit Sharma et al.) Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Neopyrenochaeta Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Neopyrenochaeta acicola (Moug. & Lév.) Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Neopyrenochaeta fragariae Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Neopyrenochaetaceae Valenzuela-Lopez, Crous, Cano, Guarro & Stchigel
- Neopyrenochaetopsis Valenzuela-Lopez, Cano, Guarro & Stchigel
- Neopyrenochaetopsis hominis Valenzuela-Lopez, Cano, Guarro & Stchigel
- New taxa
- Nothophoma variabilis Valenzuela-Lopez, Cano, Guarro & Stchigel
- Paracucurbitaria Valenzuela-Lopez, Stchigel, Guarro & Cano
- Paracucurbitaria corni (Bat. & A.F. Vital) Valenzuela-Lopez, Stchigel, Guarro & Cano
- Paracucurbitaria italica Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Parapy. protearum (Crous) Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Parapyrenochaeta Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Parapyrenochaeta acaciae (Crous et al.) Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Parapyrenochaetaceae Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Phoma
- Pleosporales
- Pleosporineae
- Pseudopyrenochaeta Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Pseudopyrenochaeta lycopersici (R.W. Schneid. & Gerlach) Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Pseudopyrenochaeta terrestris Valenzuela-Lopez, Crous, Cano, Guarro & Stchigel
- Pseudopyrenochaetaceae Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Py. botulispora Valenzuela-Lopez, Cano, Guarro & Stchigel
- Py. confluens Valenzuela-Lopez, Cano, Guarro & Stchigel
- Py. globosa Valenzuela-Lopez, Cano, Guarro & Stchigel
- Py. paucisetosa Valenzuela-Lopez, Cano, Guarro & Stchigel
- Py. setosissima Valenzuela-Lopez, Cano, Crous, Guarro & Stchigel
- Py. uberiformis Valenzuela-Lopez, Cano, Guarro & Stchigel
- Pyrenochaeta
- Pyrenochaetopsidaceae Valenzuela-Lopez, Crous, Cano, Guarro & Stchigel
- Pyrenochaetopsis
- Pyrenochaetopsis americana Valenzuela-Lopez, Cano, Guarro & Stchigel
- Remotididymella Valenzuela-Lopez, Crous, Cano, Guarro & Stchigel
- Remotididymella anthropophila Valenzuela-Lopez, Cano, Guarro & Stchigel
- Remotididymella destructiva (Plowr.) Valenzuela-Lopez, Cano, Crous, Guarro & Stchigel
- Similiphoma Valenzuela-Lopez, Crous, Cano, Guarro & Stchigel
- Similiphoma crystallifera (Gruyter et al.) Valenzuela-Lopez, Crous, Cano, Guarro & Stchigel
- Taxonomy
- Vacuiphoma Valenzuela-Lopez, Cano, Crous, Guarro & Stchigel
- Vacuiphoma bulgarica (Aveskamp et al.) Valenzuela-Lopez, Cano, Crous, Guarro & Stchigel
- Vacuiphoma oculihominis Valenzuela-Lopez, Stchigel, Guarro & Cano
- Xenodidymella saxea (Aveskamp et al.) Valenzuela-Lopez, Crous, Cano, Guarro & Stchigel
- Xenopyrenochaetopsis Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
- Xenopyrenochaetopsis pratorum (P.R. Johnst. & Boerema) Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano
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Wanasinghe DN, Hyde KD, Jeewon R, Crous PW, Wijayawardene NN, Jones EBG, Bhat DJ, Phillips AJL, Groenewald JZ, Dayarathne MC, Phukhamsakda C, Thambugala KM, Bulgakov TS, Camporesi E, Gafforov YS, Mortimer PE, Karunarathna SC. Phylogenetic revision of Camarosporium ( Pleosporineae, Dothideomycetes) and allied genera. Stud Mycol 2017; 87:207-256. [PMID: 28966419 PMCID: PMC5607397 DOI: 10.1016/j.simyco.2017.08.001] [Citation(s) in RCA: 45] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
A concatenated dataset of LSU, SSU, ITS and tef1 DNA sequence data was analysed to investigate the taxonomic position and phylogenetic relationships of the genus Camarosporium in Pleosporineae (Dothideomycetes). Newly generated sequences from camarosporium-like taxa collected from Europe (Italy) and Russia form a well-supported monophyletic clade within Pleosporineae. A new genus Camarosporidiella and a new family Camarosporidiellaceae are established to accommodate these taxa. Four new species, Neocamarosporium korfii, N. lamiacearum, N. salicorniicola and N. salsolae, constitute a strongly supported clade with several known taxa for which the new family, Neocamarosporiaceae, is introduced. The genus Staurosphaeria based on S. lycii is resurrected and epitypified, and shown to accommodate the recently introduced genus Hazslinszkyomyces in Coniothyriaceae with significant statistical support. Camarosporium quaternatum, the type species of Camarosporium and Camarosporomyces flavigena cluster together in a monophyletic clade with significant statistical support and sister to the Leptosphaeriaceae. To better resolve interfamilial/intergeneric level relationships and improve taxonomic understanding within Pleosporineae, we validate Camarosporiaceae to accommodate Camarosporium and Camarosporomyces. The latter taxa along with other species are described in this study.
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Key Words
- Ca. aborescentis (Phukhams. et al.) Phukhams., Wanas. & K.D. Hyde
- Ca. arezzoensis (Tibpromma et al.) Wanas. & K.D. Hyde
- Ca. celtidis (Shear) Thambugala, Wanas. & K.D. Hyde
- Ca. clematidis (Wijayaw. et al.) Wijayaw., Wanas. & K.D. Hyde
- Ca. elongata (Fr.) Wanas., Wijayaw. & K.D. Hyde
- Ca. eufemiana Wanas., Camporesi & K.D. Hyde
- Ca. halimodendri Wanas., Bulgakov & K.D. Hyde
- Ca. italica Wanas., Camporesi & K.D. Hyde
- Ca. laburni (Pers.) Wanas., Bulgakov, Camporesi & K.D. Hyde
- Ca. laburnicola (R.H. Perera et al.) Wanas. & K.D. Hyde
- Ca. mackenziei Wanas., Bulgakov & K.D. Hyde
- Ca. melnikii Wanas., Bulgakov & K.D. Hyde
- Ca. mirabellensis Wanas., Camporesi & K.D. Hyde
- Ca. moricola (Chethana et al.) Wanas. & K.D. Hyde
- Ca. premilcurensis Wanas., Camporesi & K.D. Hyde
- Ca. robiniicola (Wijayaw. et al.) Wijayaw., Wanas. & K.D. Hyde
- Ca. schulzeri Wanas., Bulgakov & K.D. Hyde
- Ca. spartii (Trail) Wijayaw., Wanas. & K.D. Hyde
- Camarosporiaceae Wanas., K.D. Hyde & Crous
- Camarosporidiella Wanas., Wijayaw. & K.D. Hyde
- Camarosporidiella caraganicola (Phukhams. et al.) Phukhams., Wanas. & K.D. Hyde
- Camarosporidiella elaeagnicola Wanas., Bulgakov & K.D. Hyde
- Camarosporidiella: Ca.
- Camarosporidiellaceae Wanas., Wijayaw., Crous & K.D. Hyde
- Camarosporium: Cm.
- Camarosporomyces: Cs.
- Cucurbitaria: Cu
- Multigene phylogeny
- Muriformly septate
- N. lamiacearum Dayar., E.B.G. Jones & K.D. Hyde
- N. obiones (Jaap) Wanas. & K.D. Hyde
- N. salicorniicola Dayarathne, E.B.G. Jones & K.D. Hyde
- N. salsolae Wanas., Gafforov & K.D. Hyde
- Neocamarosporiaceae Wanas., Wijayaw., Crous & K.D. Hyde
- Neocamarosporium chenopodii (Ellis & Kellerm.) Wanas. & K.D. Hyde
- Neocamarosporium korfii Wanas., E.B.G. Jones & K.D. Hyde
- Pleomorphism
- Pleosporales
- Staurosphaeria aloes (Crous & M.J. Wingf.) Crous
- Staurosphaeria lycii Rabenh
- Staurosphaeria lyciicola (Crous & R.K. Schumach.) Crous, Wanas. & K.D. Hyde
- Staurosphaeria rhamnicola Wanas., Yu. Sh. Gafforov & K.D. Hyde
- Taxonomy
- Wanas. & K.D. Hyde
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Affiliation(s)
- D N Wanasinghe
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China.,World Agro Forestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, Yunnan, China.,Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - K D Hyde
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China.,World Agro Forestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, Yunnan, China.,Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - R Jeewon
- Department of Health Sciences, Faculty of Science, University of Mauritius, Reduit, Mauritius
| | - P W Crous
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands.,Department of Microbiology and Plant Pathology, Forestry & Agricultural Biotechnology Institute, University of Pretoria, Pretoria, South Africa
| | - N N Wijayawardene
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - E B G Jones
- Department of Botany and Microbiology, King Saudi University, Riyadh, Saudi Arabia
| | - D J Bhat
- No. 128/1-J, Azad Housing Society, Curca, Goa Velha, India
| | - A J L Phillips
- University of Lisbon, Faculty of Sciences, Biosystems and Integrative Sciences Institute (BioISI), Campo Grande 1749-016, Lisbon, Portugal
| | - J Z Groenewald
- Department of Health Sciences, Faculty of Science, University of Mauritius, Reduit, Mauritius
| | - M C Dayarathne
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China.,World Agro Forestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, Yunnan, China.,Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - C Phukhamsakda
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China.,World Agro Forestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, Yunnan, China.,Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - K M Thambugala
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.,School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - T S Bulgakov
- Russian Research Institute of Floriculture and Subtropical Crops, Yana Fabritsiusa Street, 2/28, Krasnodar Region, Sochi 354002, Russia
| | - E Camporesi
- Società per gli Studi Naturalistici della Romagna, C.P. 144, Bagnacavallo, RA, Italy.,A.M.B. Gruppo Micologico Forlivese "Antonio Cicognani", Via Roma 18, Forlì, Italy.,A.M.B. Circolo Micologico "Giovanni Carini", C.P. 314, Brescia, Italy
| | - Y S Gafforov
- Laboratory of Mycology, Institute of Botany and Zoology, Academy of Sciences of the Republic of Uzbekistan, 232 Bogishamol Street, Tashkent 100053, Uzbekistan
| | - P E Mortimer
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China.,World Agro Forestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, Yunnan, China
| | - S C Karunarathna
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China.,World Agro Forestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, Yunnan, China
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49
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Hashimoto A, Matsumura M, Hirayama K, Fujimoto R, Tanaka K. Pseudodidymellaceae fam. nov.: Phylogenetic affiliations of mycopappus-like genera in Dothideomycetes. Stud Mycol 2017; 87:187-206. [PMID: 28794574 PMCID: PMC5542424 DOI: 10.1016/j.simyco.2017.07.002] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
Abstract
The familial placement of four genera, Mycodidymella, Petrakia, Pseudodidymella, and Xenostigmina, was taxonomically revised based on morphological observations and phylogenetic analyses of nuclear rDNA SSU, LSU, tef1, and rpb2 sequences. ITS sequences were also provided as barcode markers. A total of 130 sequences were newly obtained from 28 isolates which are phylogenetically related to Melanommataceae (Pleosporales, Dothideomycetes) and its relatives. Phylogenetic analyses and morphological observation of sexual and asexual morphs led to the conclusion that Melanommataceae should be restricted to its type genus Melanomma, which is characterised by ascomata composed of a well-developed, carbonaceous peridium, and an aposphaeria-like coelomycetous asexual morph. Although Mycodidymella, Petrakia, Pseudodidymella, and Xenostigmina are phylogenetically related to Melanommataceae, these genera are characterised by epiphyllous, lenticular ascomata with well-developed basal stroma in their sexual morphs, and mycopappus-like propagules in their asexual morphs, which are clearly different from those of Melanomma. Pseudodidymellaceae is proposed to accommodate these four genera. Although Mycodidymella and Xenostigmina have been considered synonyms of Petrakia based on sexual morphology, we show that they are distinct genera. Based on morphological observations, these genera in Pseudodidymellaceae are easily distinguished by their synasexual morphs: sigmoid, multi-septate, thin-walled, hyaline conidia (Mycodidymella); globose to ovoid, dictyosporus, thick-walled, brown conidia with cellular appendages (Petrakia); and clavate with a short rostrum, dictyosporus, thick-walled, brown conidia (Xenostigmina). A synasexual morph of Pseudodidymella was not observed. Although Alpinaria was treated as member of Melanommataceae in a previous study, it has hyaline cells at the base of ascomata and pseudopycnidial, confluent conidiomata which is atypical features in Melanommataceae, and is treated as incertae sedis.
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Affiliation(s)
- A Hashimoto
- Faculty of Agriculture and Life Sciences, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori, 036-8561, Japan.,Research Fellow of the Japan Society for the Promotion of Science, 5-3-1 Kojimachi, Chiyoda-ku, Tokyo, 102-0083, Japan
| | - M Matsumura
- Faculty of Agriculture and Life Sciences, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori, 036-8561, Japan.,The United Graduate School of Agricultural Sciences, Iwate University, 18-8 Ueda 3 chome, Morioka, 020-8550, Japan
| | - K Hirayama
- Apple Experiment Station, Aomori Prefectural Agriculture and Forestry Research Centre, 24 Fukutami, Botandaira, Kuroishi, Aomori, 036-0332, Japan
| | - R Fujimoto
- Faculty of Agriculture and Life Sciences, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori, 036-8561, Japan
| | - K Tanaka
- Faculty of Agriculture and Life Sciences, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori, 036-8561, Japan.,The United Graduate School of Agricultural Sciences, Iwate University, 18-8 Ueda 3 chome, Morioka, 020-8550, Japan
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50
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Revision of Lophiotremataceae ( Pleosporales, Dothideomycetes): Aquasubmersaceae, Cryptocoryneaceae, and Hermatomycetaceae fam. nov. Persoonia - Molecular Phylogeny and Evolution of Fungi 2017; 39:51-73. [PMID: 29503470 PMCID: PMC5832957 DOI: 10.3767/persoonia.2017.39.03] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Accepted: 02/05/2017] [Indexed: 11/25/2022]
Abstract
The family Lophiotremataceae (Pleosporales, Dothideomycetes) is taxonomically revised on the basis of morphological observations and phylogenetic analyses of sequences of nuclear rDNA SSU, ITS, and LSU regions and tef1 and rpb2 genes. A total of 208 sequences were generated from species of Lophiotremataceae and its relatives. According to phylogenetic analyses, Lophiotremataceae encompasses the genus Lophiotrema and five new genera: Atrocalyx, Crassimassarina, Cryptoclypeus, Galeaticarpa, and Pseudocryptoclypeus. These genera are characterised by ascomata with or without a slit-like ostiole and pycnidial conidiomata. Three new families, Aquasubmersaceae, Cryptocoryneaceae, and Hermatomycetaceae, are proposed. Two genera previously recognised as members of Lophiotremataceae, namely, Aquasubmersa having ascomata with a papillate ostiolar neck and pycnidial conidiomata and Hermatomyces possessing sporodochial conidiomata and dimorphic (lenticular and cylindrical) conidia, are included in Aquasubmersaceae and Hermatomycetaceae, respectively. Cryptocoryneum, characterised by the presence of stromatic sporodochia, cheiroid conidia, and conidial arms developed downward from the cap cells, is placed in Cryptocoryneaceae. Two new genera, Antealophiotrema and Pseudolophiotrema, are established, but their familial placements remain unresolved. Antealophiotrema bears ascomata morphologically similar to those of Lophiotrema, but is differentiated from the latter by having ascomata with a well-developed peridium and a monodictys-like asexual morph. Pseudolophiotrema is also similar to Lophiotrema, but can be distinguished by ascomata with a thin peridium. A total of three new families, seven new genera, eight new species, and two new combinations are described and illustrated.
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