Determining quality of caviar from Caspian Sea based on Raman spectroscopy and using artificial neural networks

RamanFormer: A Transformer-Based Quantification Approach for Raman Mixture Components

Raman spectroscopy is a noninvasive technique to identify materials by their unique molecular vibrational fingerprints. However, distinguishing and quantifying components in mixtures present challenges due to overlapping spectra, especially when components share similar features. This study presents "RamanFormer", a transformer-based model designed to enhance the analysis of Raman spectroscopy data. By effectively managing sequential data and integrating self-attention mechanisms, RamanFormer identifies and quantifies components in chemical mixtures with high precision, achieving a mean absolute error of 1.4% and a root mean squared error of 1.6%, significantly outperforming traditional methods such as least squares, MLP, VGG11, and ResNet50. Tested extensively on binary and ternary mixtures under varying conditions, including noise levels with a signal-to-noise ratio of up to 10 dB, RamanFormer proves to be a robust tool, improving the reliability of material identification and broadening the application of Raman spectroscopy in fields, such as material science, forensics, and biomedical diagnostics.

An integrated computational pipeline for machine learning-driven diagnosis based on Raman spectra of saliva samples

Raman Spectroscopy promises the ability to encode in spectral data the significant differences between biological samples belonging to patients affected by a disease and samples of healthy patients (controls). However, the decoding and interpretation of the Raman spectral fingerprint is still a difficult and time-consuming procedure even for domain experts. In this work, we test an end-to-end deep-learning diagnostic pipeline able to classify spectral data from saliva samples. The pipeline has been validated against the SARS-COV-2 Infection and for the screening of neurodegenerative diseases such as Parkinson's and Alzheimer's diseases. The proposed system can be used for the fast prototyping of promising non-invasive, cost and time-efficient diagnostic screening tests.

Novel aspects of Raman spectroscopy in skin research

The analytical technology of Raman spectroscopy has an almost 100‐year history. During this period, many modifications and developments happened in the method like discovery of laser, improvements in optical elements and sensitivity of spectrometer and also more advanced light detection systems. Many types of the innovative techniques appeared (e.g. Transmittance Raman spectroscopy, Coherent Raman Scattering microscopy, Surface‐Enhanced Raman scattering and Confocal Raman spectroscopy/microscopy). This review article gives a short description about these different Raman techniques and their possible applications. Then, a short statistical part is coming about the appearance of Raman spectroscopy in the scientific literature from the beginnings to these days. The third part of the paper shows the main application options of the technique (especially confocal Raman spectroscopy) in skin research, including skin composition analysis, drug penetration monitoring and analysis, diagnostic utilizations in dermatology and cosmeto‐scientific applications. At the end, the possible role of artificial intelligence in Raman data analysis and the regulatory aspect of these techniques in dermatology are briefly summarized. For the future of Raman Spectroscopy, increasing clinical relevance and in vivo applications can be predicted with spreading of non‐destructive methods and appearance with the most advanced instruments with rapid analysis time.

Rapid diagnosis of diabetes based on ResNet and Raman spectroscopy

Diabetes mellitus is a global public health problem, and the epidemic situation in China is particularly serious. The prevalence of the disease has been increasing in recent years, and the number of patients is the highest in the world. Diabetes has become another chronic non-communicable disease that seriously endangers the health of our people after cardiovascular and cerebrovascular diseases and tumors. In this study, urine sample data were collected from 37 diabetic patients and 37 healthy volunteers using Raman spectroscopy. The collected data were preprocessed using an adaptive iterative reweighted penalized least squares (airPLS) algorithm and a polynomial Savitzky-Golay smoothing algorithm. After extracting features using principal component analysis (PCA) dimensionality reduction algorithm, ResNet, support vector machine (SVM) and linear discriminant analysis (LDA) classification models were selected to classify and identify diabetic patients and healthy controls. The results show that ResNet has the best discrimination effect, and the average accuracy, recall and F1-score can reach 84.28%, 86.20% and 84.02% respectively after five cross-validations, and the area under the subject working characteristic (ROC) curve is 0.93. The experimental results show that the model established in this paper is simple to operate, highly accurate and has good reference value for rapid screening of diabetes.

Detection of Mycotoxins in Food Using Surface-Enhanced Raman Spectroscopy: A Review

Mycotoxins are toxic metabolites produced by fungi that contaminate many important crops worldwide. Humans are commonly exposed to mycotoxins through the consumption of contaminated food products. Mycotoxin contamination is unpredictable and unavoidable; it occurs at any point in the food production system under favorable conditions, and they cannot be destroyed by common heat treatments, because of their high thermal stability. Early and fast detection plays an essential role in this unique challenge to monitor the presence of these compounds in the food chain. Surface-enhanced Raman spectroscopy (SERS) is an advanced spectroscopic technique that integrates Raman spectroscopic molecular fingerprinting and enhanced sensitivity based on nanotechnology to meet the requirement of sensitivity and selectivity, but that can also be performed in a cost-effective and straightforward manner. This Review focuses on the SERS methodologies applied to date for qualitative and quantitative analysis of mycotoxins based on a variety of SERS substrates, as well as our perspectives on current limitations and future trends for applying this technique to mycotoxin analyses.

Rapid identification of cervical adenocarcinoma and cervical squamous cell carcinoma tissue based on Raman spectroscopy combined with multiple machine learning algorithms

Cervical cancer has a long latency, and early screening greatly reduces mortality. In this study, cervical adenocarcinoma and cervical squamous cell carcinoma tissue data were collected by Raman spectroscopy, and then, the adaptive iteratively reweighted penalized least squares (airPLS) algorithm and Vancouver Raman algorithm (VRA) were used to subtract the background of the collected data. The following five feature extraction algorithms were applied: partial least squares (PLS), principal component analysis (PCA), kernel principal component analysis (KPCA), isometric feature mapping (isomap) and locally linear embedding (LLE). The k-nearest neighbour (KNN), extreme learning machine (ELM), decision tree (DT), backpropagation neural network (BP), genetic optimization backpropagation neural network (GA-BP) and linear discriminant analysis (LDA) classification models were then established through the features extracted by different feature extraction algorithms. In total, 30 types of classification models were established in this experiment. This research includes eight good models, airPLS-PLS-KNN, airPLS-PLS-ELM, airPLS-PLS-GA-BP, airPLS-PLS-BP, airPLS-PLS-LDA, airPLS-PCA-KNN, airPLS-PCA-LDA, and VRA-PLS-KNN, whose diagnostic accuracy was 96.3 %, 95.56 %, 95.06 %, 94.07 %, 92.59 %, 85.19 %, 85.19 % and 85.19 %, respectively. The experimental results showed that the model established in this article is simple to operate and highly accurate and has a good reference value for the rapid screening of cervical cancer.

Fatty-acid Profiles and Fingerprints of Seven Types of Fish Roes as Determined by Chemometric Methods

The fatty acids in seven species of fish roes were determined by GC-MS in combination with principal component and cluster analyses in order to derive their fatty-acid profiles and fingerprints. Twenty-three common chromatography peaks were identified in the fatty-acid fingerprints of the seven fish roes. A total of 19 typical fatty acids were identified in the fish roes studied. The fatty acid contents of the roes were significantly different, with saturated-fatty-acid contents in the seven roes ranging from 26.69% to 41.81%, and the unsaturated-fatty-acid contents ranging from 57.65% to 72.21%, the total EPA and DHA content (37.20%) is high in E. cypselurus roe, especially. The seven roe species were clearly distinguished according to fatty-acid composition and content by principal component analysis (PCA) and divided into two groups by cluster analysis (CA). PCA of the fatty acid data yielded three significant PCs , which together account for 94% of the total variance; with PC1 contributing 54% of the total.

Comparison of Chemometric Problems in Food Analysis Using Non-Linear Methods

Food analysis is a challenging analytical problem, often addressed using sophisticated laboratory methods that produce large data sets. Linear and non-linear multivariate methods can be used to process these types of datasets and to answer questions such as whether product origin is accurately labeled or whether a product is safe to eat. In this review, we present the application of non-linear methods such as artificial neural networks, support vector machines, self-organizing maps, and multi-layer artificial neural networks in the field of chemometrics related to food analysis. We discuss criteria to determine when non-linear methods are better suited for use instead of traditional methods. The principles of algorithms are described, and examples are presented for solving the problems of exploratory analysis, classification, and prediction.

Noninvasive liver diseases detection based on serum surface enhanced Raman spectroscopy and statistical analysis

In this paper, we investigated the feasibility of using surface enhanced Raman spectroscopy (SERS) of blood serum to discriminate liver cancer and liver cirrhosis patients from normal people. Serum taken from 44 healthy people, 45 liver cancer patients, 42 post-treatment liver cancer patients and 45 liver cirrhosis patients was measured. SERS peaks from these groups were compared and the assignments and biomedical meanings were analyzed and explained. In addition, support vector machine (SVM), partial least square-discriminant analysis (PLS-DA) and artificial neural networks (ANN) was used on the obtained SERS spectra to identify its diagnostic potential for liver diseases. PLS-SVM, PLS-DA and PLS-ANN indicated 91.5%, 89.2% and 90.3% accuracy, respectively. This preliminary study demonstrates that serum SERS can be used for liver cancer screening.

Dispersive and FT-Raman spectroscopic methods in food analysis

Raman spectroscopy is a powerful technique for molecular analysis of food samples.