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1
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KISHIKAWA N, NUMATA S, UMENO T, EL-MAGHRABEY M, OHYAMA K, TANAKA M, KURODA N. Preparation and Characterization of HPLC Stationary Phases Modified with Peptide Containing Unnatural Amino Acid. BUNSEKI KAGAKU 2022. [DOI: 10.2116/bunsekikagaku.71.351] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
| | - Sho NUMATA
- Graduate School of Biomedical Sciences, Nagasaki University
| | - Tomohiro UMENO
- Current affiliation, Faculty of Pharmaceutical Sciences, Showa Pharmaceutical University
| | | | - Kaname OHYAMA
- Department of Hospital Pharmacy, Nagasaki University Hospital
| | | | - Naotaka KURODA
- Graduate School of Biomedical Sciences, Nagasaki University
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2
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Goyal B, Srivastava KR, Durani S. Examination of the Effect of N-terminal Diproline and Charged Side Chains on the Stabilization of Helical Conformation in Alanine-based Short Peptides: A Molecular Dynamics Study. ChemistrySelect 2016. [DOI: 10.1002/slct.201601381] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Bhupesh Goyal
- Department of Chemistry; Indian Institute of Technology Bombay, Powai; Mumbai-400076 India
- Department of Chemistry; School of Basic and Applied Sciences; Sri Guru Granth Sahib World University, Fatehgarh; Sahib-140406, Punjab India
| | - Kinshuk Raj Srivastava
- Department of Chemistry; Indian Institute of Technology Bombay, Powai; Mumbai-400076 India
- Life Sciences Institute; University of Michigan; Ann Arbor, MI USA 48105
| | - Susheel Durani
- Department of Chemistry; Indian Institute of Technology Bombay, Powai; Mumbai-400076 India
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3
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Demizu Y, Doi M, Yamashita H, Misawa T, Oba M, Kurihara M, Suemune H, Tanaka M. The side-chain hydroxy groups of a cyclic α,α-disubstituted α-amino acid promote oligopeptide 310 -helix packing in the crystalline state. Biopolymers 2016; 106:757-68. [PMID: 27237543 DOI: 10.1002/bip.22881] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2016] [Revised: 05/09/2016] [Accepted: 05/23/2016] [Indexed: 01/08/2023]
Abstract
A single chiral cyclic α,α-disubstituted amino acid with side-chain methoxymethyl (MOM) protecting groups, (3S,4S)-1-amino-(3,4-dimethoxymethoxy)cyclopentanecarboxylic acid [(S, S)-Ac5 c(dOMOM) ], or side-chain hydroxy groups, (3S,4S)-1-amino-(3,4-dihydroxy)cyclopentanecarboxylic acid [(S, S)-Ac5 c(dOH) ], was attached to the N-terminal or C-terminal position of α-aminoisobutyric acid (Aib) tetrapeptide segments; i.e., we designed and synthesized four pentapeptides, Cbz-[(S, S)-Ac5 c(dOMOM) ]-(Aib)4 -OEt (1), Cbz-[(S, S)-Ac5 c(dOH) ]-(Aib)4 -OEt (2), Cbz-(Aib)4 -[(S, S)-Ac5 c(dOMOM) ]-OMe (3), and Cbz-(Aib)4 -[(S, S)-Ac5 c(dOH) ]-OMe (4). We then analyzed the peptides' structures in the crystalline state. The four peptides all folded into 310 -helical structures; 1 formed a left-handed (M) 310 -helix, 2 formed a mixture of right-handed (P) and (M) 310 -helices, 3 formed a mixture of (P) and (M) 310 -helices, and 4 formed a (P) 310 -helix, respectively. In packing mode, the molecules of peptides 1 and 3, which both possessed an Ac5 c(dOMOM) residue, were connected by intermolecular hydrogen bonds along the peptide backbone (NH···O type). On the other hand, the packing of peptides 2 and 4, which both contained an Ac5 c(dOH) residue, was based on intermolecular hydrogen bonds derived from both the peptide backbone and the side-chain hydroxy groups of the amino acid Ac5 c(dOH) (OH···O type). © 2016 Wiley Periodicals, Inc. Biopolymers (Pept Sci) 106: 757-768, 2016.
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Affiliation(s)
- Yosuke Demizu
- Division of Organic Chemistry, National Institute of Health Sciences, Tokyo, 158-8501, Japan.
| | - Mitsunobu Doi
- Osaka University of Pharmaceutical Sciences, Osaka, 569-1094, Japan
| | - Hiroko Yamashita
- Division of Organic Chemistry, National Institute of Health Sciences, Tokyo, 158-8501, Japan
| | - Takashi Misawa
- Division of Organic Chemistry, National Institute of Health Sciences, Tokyo, 158-8501, Japan
| | - Makoto Oba
- Graduate School of Biomedical Sciences, Nagasaki University, 1-14 Bunkyo-Machi, Nagasaki, 852-8521, Japan
| | - Masaaki Kurihara
- Division of Organic Chemistry, National Institute of Health Sciences, Tokyo, 158-8501, Japan
| | - Hiroshi Suemune
- Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka, 812-8582, Japan
| | - Masakazu Tanaka
- Graduate School of Biomedical Sciences, Nagasaki University, 1-14 Bunkyo-Machi, Nagasaki, 852-8521, Japan
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4
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Crisma M, De Zotti M, Formaggio F, Peggion C, Moretto A, Toniolo C. Handedness preference and switching of peptide helices. Part II: Helices based on noncodedα-amino acids. J Pept Sci 2015; 21:148-77. [DOI: 10.1002/psc.2743] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2014] [Revised: 12/19/2014] [Accepted: 12/19/2014] [Indexed: 12/27/2022]
Affiliation(s)
| | - Marta De Zotti
- Department of Chemistry; University of Padova; Padova Italy
| | - Fernando Formaggio
- ICB; Padova Unit; CNR Padova Italy
- Department of Chemistry; University of Padova; Padova Italy
| | | | - Alessandro Moretto
- ICB; Padova Unit; CNR Padova Italy
- Department of Chemistry; University of Padova; Padova Italy
| | - Claudio Toniolo
- ICB; Padova Unit; CNR Padova Italy
- Department of Chemistry; University of Padova; Padova Italy
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5
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Oba M, Kawabe N, Takazaki H, Demizu Y, Doi M, Kurihara M, Suemune H, Tanaka M. Conformational studies on peptides having chiral five-membered ring amino acid with two azido or triazole functional groups within the sequence of Aib residues. Tetrahedron 2014. [DOI: 10.1016/j.tet.2014.09.086] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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6
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Yamashita H, Demizu Y, Shoda T, Sato Y, Oba M, Tanaka M, Kurihara M. Amphipathic short helix-stabilized peptides with cell-membrane penetrating ability. Bioorg Med Chem 2014; 22:2403-8. [DOI: 10.1016/j.bmc.2014.03.005] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2014] [Revised: 02/28/2014] [Accepted: 03/04/2014] [Indexed: 10/25/2022]
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7
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Demizu Y, Misawa T, Kurihara M. Development of Stabilized Short Helical Peptides and Their Functionalization. J SYN ORG CHEM JPN 2014. [DOI: 10.5059/yukigoseikyokaishi.72.1336] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Yosuke Demizu
- Division of Organic Chemistry, National Institute of Health Sciences
| | | | - Masaaki Kurihara
- Division of Organic Chemistry, National Institute of Health Sciences
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8
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Development of stapled short helical peptides capable of inhibiting vitamin D receptor (VDR)–coactivator interactions. Bioorg Med Chem Lett 2013; 23:4292-6. [DOI: 10.1016/j.bmcl.2013.06.002] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2013] [Revised: 05/27/2013] [Accepted: 06/01/2013] [Indexed: 11/19/2022]
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9
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Demizu Y, Nagoya S, Doi M, Sato Y, Tanaka M, Kurihara M. Twisted structure of a cyclic hexapeptide containing a combination of alternating L-Leu-D-Leu-Aib segments. J Org Chem 2012; 77:9361-5. [PMID: 23006337 DOI: 10.1021/jo301509c] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We designed and synthesized a C(2)-symmetric cyclic hexapeptide, cyclo(L-Leu-D-Leu-Aib)(2) (2), which contains L- and D-amino acids and achiral Aib residues. The conformation of 2 was analyzed in the crystalline state and in solution, which was a unique figure-eight-shaped conformation.
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Affiliation(s)
- Yosuke Demizu
- Division of Organic Chemistry, National Institute of Health Sciences, Tokyo 158-8501, Japan.
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10
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Demizu Y, Doi M, Sato Y, Tanaka M, Okuda H, Kurihara M. Screw-Sense Control of Helical Oligopeptides Containing Equal Amounts of L- and D-Amino Acids. Chemistry 2011; 17:11107-9. [DOI: 10.1002/chem.201101809] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2011] [Indexed: 11/09/2022]
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11
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Enantioselective epoxidation of α,β-unsaturated ketones catalyzed by stapled helical l-Leu-based peptides. Tetrahedron 2011. [DOI: 10.1016/j.tet.2011.06.075] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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12
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Demizu Y, Doi M, Sato Y, Tanaka M, Okuda H, Kurihara M. Effect of one D-Leu residue on right-handed helical -L-Leu-Aib- peptides in the crystal state. J Pept Sci 2011; 17:420-6. [DOI: 10.1002/psc.1332] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2010] [Revised: 09/15/2010] [Accepted: 10/18/2010] [Indexed: 11/11/2022]
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13
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Yamagata N, Demizu Y, Sato Y, Doi M, Tanaka M, Nagasawa K, Okuda H, Kurihara M. Design of a stabilized short helical peptide and its application to catalytic enantioselective epoxidation of (E)-chalcone. Tetrahedron Lett 2011. [DOI: 10.1016/j.tetlet.2010.12.030] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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14
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Demizu Y, Doi M, Kurihara M, Okuda H, Nagano M, Suemune H, Tanaka M. Conformational studies on peptides containing α,α-disubstituted α-amino acids: chiral cyclic α,α-disubstituted α-amino acid as an α-helical inducer. Org Biomol Chem 2011; 9:3303-12. [DOI: 10.1039/c0ob01146k] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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15
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Demizu Y, Tanaka M, Doi M, Kurihara M, Okuda H, Suemune H. Conformations of peptides containing a chiral cyclic α, α-disubstituted α-amino acid within the sequence of Aib residues. J Pept Sci 2010; 16:621-6. [DOI: 10.1002/psc.1273] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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16
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Demizu Y, Doi M, Sato Y, Tanaka M, Okuda H, Kurihara M. Three-Dimensional Structural Control of Diastereomeric Leu-Leu-Aib-Leu-Leu-Aib Sequences in the Solid State. J Org Chem 2010; 75:5234-9. [DOI: 10.1021/jo100965r] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yosuke Demizu
- Division of Organic Chemistry, National Institute of Health Sciences, Tokyo 158-8501, Japan
| | - Mitsunobu Doi
- Osaka University of Pharmaceutical Sciences, Osaka 569-1094, Japan
| | - Yukiko Sato
- Division of Organic Chemistry, National Institute of Health Sciences, Tokyo 158-8501, Japan
| | - Masakazu Tanaka
- Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki 852-8521, Japan
| | - Haruhiro Okuda
- Division of Organic Chemistry, National Institute of Health Sciences, Tokyo 158-8501, Japan
| | - Masaaki Kurihara
- Division of Organic Chemistry, National Institute of Health Sciences, Tokyo 158-8501, Japan
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