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Fé LXSGM, Cipolatti EP, Pinto MCC, Branco S, Nogueira FCS, Ortiz GMD, Pinheiro ADS, Manoel EA. Enzymes in the time of COVID-19: An overview about the effects in the human body, enzyme market, and perspectives for new drugs. Med Res Rev 2022; 42:2126-2167. [PMID: 35762498 PMCID: PMC9350392 DOI: 10.1002/med.21919] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Revised: 01/27/2022] [Accepted: 06/08/2022] [Indexed: 12/11/2022]
Abstract
The rising pandemic caused by a coronavirus, resulted in a scientific quest to discover some effective treatments against its etiologic agent, the severe acute respiratory syndrome‐coronavirus 2 (SARS‐CoV‐2). This research represented a significant scientific landmark and resulted in many medical advances. However, efforts to understand the viral mechanism of action and how the human body machinery is subverted during the infection are still ongoing. Herein, we contributed to this field with this compilation of the roles of both viral and human enzymes in the context of SARS‐CoV‐2 infection. In this sense, this overview reports that proteases are vital for the infection to take place: from SARS‐CoV‐2 perspective, the main protease (Mpro) and papain‐like protease (PLpro) are highlighted; from the human body, angiotensin‐converting enzyme‐2, transmembrane serine protease‐2, and cathepsins (CatB/L) are pointed out. In addition, the influence of the virus on other enzymes is reported as the JAK/STAT pathway and the levels of lipase, enzymes from the cholesterol metabolism pathway, amylase, aspartate aminotransferase, alanine aminotransferase, lactate dehydrogenase, and glyceraldehyde 3‐phosphate dehydrogenase are also be disturbed in SARS‐CoV‐2 infection. Finally, this paper discusses the importance of detailed enzymatic studies for future treatments against SARS‐CoV‐2, and how some issues related to the syndrome treatment can create opportunities in the biotechnological market of enzymes and the development of new drugs.
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Affiliation(s)
- Luana Xavier Soares Gomes Moura Fé
- Departamento de Biotecnologia Farmacêutica, Faculdade de Farmácia, Centro de Ciências da Saúde (CCS), Universidade Federal do Rio de Janeiro (UFRJ)-Cidade Universitária, Rio de Janeiro, Rio de Janeiro, Brazil
| | - Eliane Pereira Cipolatti
- Departamento de Biotecnologia Farmacêutica, Faculdade de Farmácia, Centro de Ciências da Saúde (CCS), Universidade Federal do Rio de Janeiro (UFRJ)-Cidade Universitária, Rio de Janeiro, Rio de Janeiro, Brazil.,Departamento de Engenharia Química, Instituto de Tecnologia, Universidade Federal Rural do Rio de Janeiro (UFRRJ), Seropédica, Rio de Janeiro, Brazil
| | - Martina Costa Cerqueira Pinto
- Departamento de Bioquímica, Instituto de Química, Centro de Tecnologia (CT), Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Rio de Janeiro, Brazil.,Chemical Engineering Program, Instituto Alberto Luiz Coimbra de Pós-graduação e Pesquisa de Engenharia (COPPE), Centro de Tecnologia (CT), Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Rio de Janeiro, Brazil
| | - Suema Branco
- Biofísica Ambiental, Instituto de Biofísica Carlos Chagas Filho, Centro de Ciências da Saúde (CCS), Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Rio de Janeiro, Brazil
| | - Fábio César Sousa Nogueira
- Departamento de Bioquímica, Instituto de Química, Centro de Tecnologia (CT), Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Rio de Janeiro, Brazil
| | - Gisela Maria Dellamora Ortiz
- Departamento de Fármacos e Medicamentos, Faculdade de Farmácia, Centro de Ciências da Saúde (CCS), Universidade Federal do Rio de Janeiro (UFRJ)-Cidade Universitária, Rio de Janeiro, Rio de Janeiro, Brazil
| | - Anderson de Sá Pinheiro
- Departamento de Bioquímica, Instituto de Química, Centro de Tecnologia (CT), Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Rio de Janeiro, Brazil
| | - Evelin Andrade Manoel
- Departamento de Biotecnologia Farmacêutica, Faculdade de Farmácia, Centro de Ciências da Saúde (CCS), Universidade Federal do Rio de Janeiro (UFRJ)-Cidade Universitária, Rio de Janeiro, Rio de Janeiro, Brazil.,Departamento de Bioquímica, Instituto de Química, Centro de Tecnologia (CT), Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Rio de Janeiro, Brazil
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Dulęba J, Siódmiak T, Marszałł MP. The influence of substrate systems on the enantioselective and lipolytic activity of immobilized Amano PS from Burkholderia cepacia lipase (APS-BCL). Process Biochem 2022. [DOI: 10.1016/j.procbio.2022.06.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Cipolatti EP, Rios NS, Sousa JS, Robert JDM, da Silva AAT, Pinto MC, Simas ABC, Vilarrasa-García E, Fernandez-Lafuente R, Gonçalves LRB, Freire DMG, Manoel EA. Synthesis of lipase/silica biocatalysts through the immobilization of CALB on porous SBA-15 and their application on the resolution of pharmaceutical derivatives and on nutraceutical enrichment of natural oil. MOLECULAR CATALYSIS 2021. [DOI: 10.1016/j.mcat.2021.111529] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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4
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Production of new nanobiocatalysts via immobilization of lipase B from C. antarctica on polyurethane nanosupports for application on food and pharmaceutical industries. Int J Biol Macromol 2020; 165:2957-2963. [DOI: 10.1016/j.ijbiomac.2020.10.179] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Revised: 09/04/2020] [Accepted: 10/22/2020] [Indexed: 12/18/2022]
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Ribeiro MFP, Pais KC, de Jesus BSM, Fernandez-Lafuente R, Freire DMG, Manoel EA, Simas ABC. Lipase Regioselective O
-Acetylations of a myo
-Inositol Derivative: Efficient Desymmetrization of 1,3-Di-O
-benzyl-myo
-inositol. European J Org Chem 2018. [DOI: 10.1002/ejoc.201701417] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Marcela F. P. Ribeiro
- Departamento de Bioquímica; Instituto de Química (IQ); Universidade Federal do Rio de Janeiro (UFRJ); CT, bloco A, 5 21941-909 Rio de Janeiro Brazil
| | - Karla C. Pais
- Instituto de Pesquisas de Produtos Naturais (IPPN); Universidade Federal do Rio de Janeiro (UFRJ); CCS, bloco H 21941-902 Rio de Janeiro Brazil
| | - Barbara S. M. de Jesus
- Instituto de Pesquisas de Produtos Naturais (IPPN); Universidade Federal do Rio de Janeiro (UFRJ); CCS, bloco H 21941-902 Rio de Janeiro Brazil
| | | | - Denise M. G. Freire
- Departamento de Bioquímica; Instituto de Química (IQ); Universidade Federal do Rio de Janeiro (UFRJ); CT, bloco A, 5 21941-909 Rio de Janeiro Brazil
| | - Evelin A. Manoel
- Departamento de Bioquímica; Instituto de Química (IQ); Universidade Federal do Rio de Janeiro (UFRJ); CT, bloco A, 5 21941-909 Rio de Janeiro Brazil
- Departamento de Biotecnologia Farmacêutica; Faculdade de Farmácia; Universidade Federal do Rio de Janeiro; Rio de Janeiro Brazil
| | - Alessandro B. C. Simas
- Instituto de Pesquisas de Produtos Naturais (IPPN); Universidade Federal do Rio de Janeiro (UFRJ); CCS, bloco H 21941-902 Rio de Janeiro Brazil
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6
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Support engineering: relation between development of new supports for immobilization of lipases and their applications. ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.biori.2017.01.004] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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7
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Manoel EA, Robert JM, Pinto MCC, Machado ACO, Besteti MD, Coelho MAZ, Simas ABC, Fernandez-Lafuente R, Pinto JC, Freire DMG. Evaluation of the performance of differently immobilized recombinant lipase B from Candida antarctica preparations for the synthesis of pharmacological derivatives in organic media. RSC Adv 2016. [DOI: 10.1039/c5ra22508f] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
This paper shows the production of lipase B fromCandida antarctica(LIPB) after cloning the gene that encoded it inPichia pastorisusing PGK as a constitutive promoter. The lipase was immobilized on different home-made supports for distinct reactions.
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Affiliation(s)
- Evelin A. Manoel
- Laboratório Integrado de Pesquisas em Biotecnologia
- Departamento de Biotecnologia Farmacêutica
- Faculdade de Farmácia
- Universidade Federal do Rio de Janeiro
- Rio de Janeiro
| | - Julia M. Robert
- Laboratório de Biotecnologia Microbiana
- Departamento de Bioquímica
- Instituto de Química
- Universidade Federal do Rio de Janeiro
- Rio de Janeiro
| | - Martina C. C. Pinto
- Laboratório de Engenharia de Polímeros/EngePol
- Programa de Engenharia Química
- COPPE
- Universidade Federal do Rio de Janeiro
- Rio de Janeiro
| | - Antonio C. O. Machado
- Laboratório de Biotecnologia Microbiana
- Departamento de Bioquímica
- Instituto de Química
- Universidade Federal do Rio de Janeiro
- Rio de Janeiro
| | - Marina D. Besteti
- Laboratório de Engenharia de Polímeros/EngePol
- Programa de Engenharia Química
- COPPE
- Universidade Federal do Rio de Janeiro
- Rio de Janeiro
| | - Maria Alice Z. Coelho
- Biological System Engineering Group Laboratory
- Departamento de Engenharia Bioquímica
- Escola de Química
- Universidade Federal do Rio de Janeiro
- Rio de Janeiro
| | - Alessandro B. C. Simas
- Laboratório Roderick Barnes
- Instituto de Pesquisas e Produtos Naturais
- Universidade Federal do Rio de Janeiro
- Rio de Janeiro
- Brazil
| | | | - Jose Carlos Pinto
- Laboratório de Engenharia de Polímeros/EngePol
- Programa de Engenharia Química
- COPPE
- Universidade Federal do Rio de Janeiro
- Rio de Janeiro
| | - Denise M. G. Freire
- Laboratório de Biotecnologia Microbiana
- Departamento de Bioquímica
- Instituto de Química
- Universidade Federal do Rio de Janeiro
- Rio de Janeiro
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Manoel EA, Ribeiro MF, dos Santos JC, Coelho MAZ, Simas AB, Fernandez-Lafuente R, Freire DM. Accurel MP 1000 as a support for the immobilization of lipase from Burkholderia cepacia : Application to the kinetic resolution of myo -inositol derivatives. Process Biochem 2015. [DOI: 10.1016/j.procbio.2015.06.023] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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9
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Molecular and functional diversity of yeast and fungal lipases: Their role in biotechnology and cellular physiology. Prog Lipid Res 2015; 57:40-54. [DOI: 10.1016/j.plipres.2014.12.001] [Citation(s) in RCA: 96] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2014] [Revised: 09/30/2014] [Accepted: 12/18/2014] [Indexed: 01/12/2023]
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10
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Lee AMM, Painter GF, Compton BJ, Larsen DS. Resolution of orthogonally protected myo-inositols with novozym 435 providing an enantioconvergent pathway to Ac2PIM1. J Org Chem 2014; 79:10916-31. [PMID: 25338261 DOI: 10.1021/jo5019188] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Orthogonally protected chiral myo-inositol derivatives are important intermediates for higher order myo-inositol-containing compounds. Here, the use of the immobilized enzyme Novozym 435 to efficiently catalyze the acetylation of the 5R configured enantiomer of racemic 1,2-O-isopropylidene-myo-inositols possessing chemically and sterically diverse protecting groups at O-3 and O-6 is described. The resolutions were successful with allyl, benzyl, 4-bromo-, 4-methoxy-, 4-nitro-, and 4-(3,4-dimethoxyphenyl)benzyl, propyl, and propargyl protection at O-6 in combination with either allyl or benzyl groups at O-3. Bulky protecting groups slow the rate of acetylation. No reaction was observed for 3,6-di-O-triisopropylsilyl-1,2-O-isopropylidene-myo-inositol. The utility of this methodology was demonstrated by the first reported synthesis of an Ac2PIM1 (9), which used both enantiomers of the resolved 3-O-allyl-6-O-benzyl-1,2-O-isopropylidene-myo-inositol in a convergent synthesis.
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Affiliation(s)
- Alastair M M Lee
- Department of Chemistry, University of Otago , P.O. Box 56, Dunedin, New Zealand
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Pinto MCC, Freire DMG, Pinto JC. Influence of the morphology of core-shell supports on the immobilization of lipase B from Candida antarctica. Molecules 2014; 19:12509-30. [PMID: 25153868 PMCID: PMC6271369 DOI: 10.3390/molecules190812509] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2014] [Revised: 07/28/2014] [Accepted: 08/01/2014] [Indexed: 01/21/2023] Open
Abstract
Core-shell polymer particles with different properties were produced through combined suspension-emulsion polymerizations and employed as supports for immobilization of lipase B from Candida antarctica. In order to evaluate how the morphology of the particles affects the immobilization parameters, empirical models were developed to describe the performance of the biocatalysts as a function of the specific area, volume of pores and average pore diameter of the supports. It was observed that the average pore sizes did not affect the enzymatic activities in the analyzed range of pore sizes. It was also observed that the increase of the specific area (and of the volume of pores) led to higher enzyme loadings, also leading to an increase in the esterification activity, as expected. However, when the specific area (and volume of pores) increased, the hydrolytic activity and the retention of hydrolytic activity of the biocatalysts decreased, indicating the existence of diffusional limitations for some hydrolytic reactions, probably because of the high reaction rates.
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Affiliation(s)
- Martina C C Pinto
- Programa de Engenharia Química, COPPE, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Caixa 68502, Brazil.
| | - Denise M G Freire
- Departamento de Bioquímica, Instituto de Química, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Caixa 68502, Brazil.
| | - José Carlos Pinto
- Programa de Engenharia Química, COPPE, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Caixa 68502, Brazil.
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Anobom CD, Pinheiro AS, De-Andrade RA, Aguieiras ECG, Andrade GC, Moura MV, Almeida RV, Freire DM. From structure to catalysis: recent developments in the biotechnological applications of lipases. BIOMED RESEARCH INTERNATIONAL 2014; 2014:684506. [PMID: 24783219 PMCID: PMC3982246 DOI: 10.1155/2014/684506] [Citation(s) in RCA: 81] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 12/12/2013] [Accepted: 02/17/2014] [Indexed: 12/23/2022]
Abstract
Microbial lipases are highly appreciated as biocatalysts due to their peculiar characteristics such as the ability to utilize a wide range of substrates, high activity and stability in organic solvents, and regio- and/or enantioselectivity. These enzymes are currently being applied in a variety of biotechnological processes, including detergent preparation, cosmetics and paper production, food processing, biodiesel and biopolymer synthesis, and the biocatalytic resolution of pharmaceutical derivatives, esters, and amino acids. However, in certain segments of industry, the use of lipases is still limited by their high cost. Thus, there is a great interest in obtaining low-cost, highly active, and stable lipases that can be applied in several different industrial branches. Currently, the design of specific enzymes for each type of process has been used as an important tool to address the limitations of natural enzymes. Nowadays, it is possible to "order" a "customized" enzyme that has ideal properties for the development of the desired bioprocess. This review aims to compile recent advances in the biotechnological application of lipases focusing on various methods of enzyme improvement, such as protein engineering (directed evolution and rational design), as well as the use of structural data for rational modification of lipases in order to create higher active and selective biocatalysts.
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Affiliation(s)
- Cristiane D. Anobom
- Departamento de Bioquímica, Universidade Federal do Rio de Janeiro, Avenida Athos da Silveira Ramos, 21941-909 Rio de Janeiro, RJ, Brazil
| | - Anderson S. Pinheiro
- Departamento de Bioquímica, Universidade Federal do Rio de Janeiro, Avenida Athos da Silveira Ramos, 21941-909 Rio de Janeiro, RJ, Brazil
| | - Rafael A. De-Andrade
- Departamento de Bioquímica, Universidade Federal do Rio de Janeiro, Avenida Athos da Silveira Ramos, 21941-909 Rio de Janeiro, RJ, Brazil
| | - Erika C. G. Aguieiras
- Departamento de Bioquímica, Universidade Federal do Rio de Janeiro, Avenida Athos da Silveira Ramos, 21941-909 Rio de Janeiro, RJ, Brazil
| | - Guilherme C. Andrade
- Departamento de Bioquímica, Universidade Federal do Rio de Janeiro, Avenida Athos da Silveira Ramos, 21941-909 Rio de Janeiro, RJ, Brazil
| | - Marcelo V. Moura
- Departamento de Bioquímica, Universidade Federal do Rio de Janeiro, Avenida Athos da Silveira Ramos, 21941-909 Rio de Janeiro, RJ, Brazil
| | - Rodrigo V. Almeida
- Departamento de Bioquímica, Universidade Federal do Rio de Janeiro, Avenida Athos da Silveira Ramos, 21941-909 Rio de Janeiro, RJ, Brazil
| | - Denise M. Freire
- Departamento de Bioquímica, Universidade Federal do Rio de Janeiro, Avenida Athos da Silveira Ramos, 21941-909 Rio de Janeiro, RJ, Brazil
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Vasconcelos MG, Briggs RH, Aguiar LC, Freire DM, Simas AB. Efficient desymmetrization of 4,6-di-O-benzyl-myo-inositol by Lipozyme TL-IM. Carbohydr Res 2014; 386:7-11. [DOI: 10.1016/j.carres.2013.11.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2013] [Revised: 10/27/2013] [Accepted: 11/11/2013] [Indexed: 10/26/2022]
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Preparation of core–shell polymer supports to immobilize lipase B from Candida antarctica. ACTA ACUST UNITED AC 2014. [DOI: 10.1016/j.molcatb.2013.11.020] [Citation(s) in RCA: 65] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Manoel EA, Pais KC, Flores MC, e Miranda LSDM, Coelho MAZ, Simas AB, Freire DM, de Souza ROM. Kinetic resolution of a precursor for myo-inositol phosphates under continuous flow conditions. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/j.molcatb.2012.11.006] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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16
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Manoel EA, Pais KC, Cunha AG, Simas ABC, Coelho MAZ, Freire DMG. Kinetic Resolution of 1,3,6-Tri-O-benzyl-myo-Inositol by Novozym 435: Optimization and Enzyme Reuse. Org Process Res Dev 2012. [DOI: 10.1021/op300063f] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Evelin A. Manoel
- Departamento
de Engenharia Bioquímica, Universidade Federal do Rio de Janeiro, Ilha do Fundão, Rio
de Janeiro, RJ, Brazil, EQ
| | - Karla C. Pais
- Núcleo
de Pesquisas de Produtos Naturais (NPPN), Universidade Federal do Rio de Janeiro, Rio de Janeiro,
Brazil
| | - Aline G. Cunha
- Departamento
de Bioquímica, Programa de Pós-Graduação
em Bioquímica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Alessandro B. C. Simas
- Núcleo
de Pesquisas de Produtos Naturais (NPPN), Universidade Federal do Rio de Janeiro, Rio de Janeiro,
Brazil
| | - Maria Alice Z. Coelho
- Departamento
de Engenharia Bioquímica, Universidade Federal do Rio de Janeiro, Ilha do Fundão, Rio
de Janeiro, RJ, Brazil, EQ
| | - Denise M. G. Freire
- Departamento
de Bioquímica, Programa de Pós-Graduação
em Bioquímica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
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