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Kamińska K, Mular A, Olshvang E, Nolte NM, Kozłowski H, Wojaczyńska E, Gumienna-Kontecka E. The diversity and utility of arylthiazoline and aryloxazoline siderophores: challenges of total synthesis. RSC Adv 2022; 12:25284-25322. [PMID: 36199325 PMCID: PMC9450019 DOI: 10.1039/d2ra03841b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Accepted: 08/18/2022] [Indexed: 11/21/2022] Open
Abstract
Siderophores are unique ferric ion chelators produced and secreted by some organisms like bacteria, fungi and plants under iron deficiency conditions. These molecules possess immense affinity and specificity for Fe3+ and other metal ions, which attracts great interest due to the numerous possibilities of application, including antibiotics delivery to resistant bacteria strains. Total synthesis of siderophores is a must since the compounds are present in natural sources at extremely small concentrations. These molecules are extremely diverse in terms of molecular structure and physical and chemical properties. This review is focused on achievements and developments in the total synthesis strategies of naturally occurring siderophores bearing arylthiazoline and aryloxazoline units. A review presents advances in total synthesis of thiazoline and oxazoline-bearing siderophores, unique ferric ion chelators found in some bacteria, fungi and plants.![]()
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Affiliation(s)
- Karolina Kamińska
- Faculty of Chemistry, University of Wrocław, Fryderyka Joliot-Curie 14, 50-383 Wrocław, Poland
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
| | - Andrzej Mular
- Faculty of Chemistry, University of Wrocław, Fryderyka Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Evgenia Olshvang
- Inorganic Chemistry I-Bioinorganic Chemistry, Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitaetsstrasse, 44801 Bochum, Germany
| | - Nils Metzler Nolte
- Inorganic Chemistry I-Bioinorganic Chemistry, Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitaetsstrasse, 44801 Bochum, Germany
| | - Henryk Kozłowski
- Faculty of Chemistry, University of Wrocław, Fryderyka Joliot-Curie 14, 50-383 Wrocław, Poland
- Department of Health Sciences, University of Opole, Katowicka 68, 45-060 Opole, Poland
| | - Elżbieta Wojaczyńska
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
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Chen J, Frediansyah A, Männle D, Straetener J, Brötz‐Oesterhelt H, Ziemert N, Kaysser L, Gross H. New Nocobactin Derivatives with Antimuscarinic Activity, Terpenibactins A-C, Revealed by Genome Mining of Nocardia terpenica IFM 0406. Chembiochem 2020; 21:2205-2213. [PMID: 32196864 PMCID: PMC7497119 DOI: 10.1002/cbic.202000062] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Revised: 03/07/2020] [Indexed: 12/18/2022]
Abstract
We report a genomics-guided exploration of the metabolic potential of the brasilicardin producer strain Nocardia terpenica IFM 0406. Bioinformatics analysis of the whole genome sequence revealed the presence of a biosynthetic gene cluster presumably responsible for the generation of formerly unknown nocobactin derivatives. Mass spectrometry-assisted isolation led to the identification of three new siderophores, terpenibactins A (1), B (2) and C (3), which belong to the class of nocobactins. Their structures were elucidated by employing spectroscopic techniques. Compounds 1-3 demonstrated inhibitory activity towards the muscarinic M3 receptor, while exhibiting only a low cytotoxicity.
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Affiliation(s)
- Julia Chen
- Pharmaceutical Institute, Dept. of Pharmaceutical BiologyUniversity of TübingenAuf der Morgenstelle 872076TübingenGermany
- German Center for Infection Research (DZIF) Partner site Tübingen72076TübingenGermany
| | - Andri Frediansyah
- Pharmaceutical Institute, Dept. of Pharmaceutical BiologyUniversity of TübingenAuf der Morgenstelle 872076TübingenGermany
- German Center for Infection Research (DZIF) Partner site Tübingen72076TübingenGermany
- Research Division for Natural Product Technology (BPTBA)Indonesian Institute of Sciences (LIPI)Wonosari55861Indonesia
| | - Daniel Männle
- Pharmaceutical Institute, Dept. of Pharmaceutical BiologyUniversity of TübingenAuf der Morgenstelle 872076TübingenGermany
- German Center for Infection Research (DZIF) Partner site Tübingen72076TübingenGermany
- Department of Applied Natural Products Genome Mining Interfaculty Institute of Microbiology and Infection Medicine (IMIT)University of TübingenAuf der Morgenstelle 2872076TübingenGermany
| | - Jan Straetener
- German Center for Infection Research (DZIF) Partner site Tübingen72076TübingenGermany
- Department of Microbial Bioactive Compounds Interfaculty Institute of Microbiology and Infection Medicine (IMIT)University of TübingenAuf der Morgenstelle 2872076TübingenGermany
| | - Heike Brötz‐Oesterhelt
- German Center for Infection Research (DZIF) Partner site Tübingen72076TübingenGermany
- Department of Microbial Bioactive Compounds Interfaculty Institute of Microbiology and Infection Medicine (IMIT)University of TübingenAuf der Morgenstelle 2872076TübingenGermany
| | - Nadine Ziemert
- German Center for Infection Research (DZIF) Partner site Tübingen72076TübingenGermany
- Department of Applied Natural Products Genome Mining Interfaculty Institute of Microbiology and Infection Medicine (IMIT)University of TübingenAuf der Morgenstelle 2872076TübingenGermany
| | - Leonard Kaysser
- Pharmaceutical Institute, Dept. of Pharmaceutical BiologyUniversity of TübingenAuf der Morgenstelle 872076TübingenGermany
- German Center for Infection Research (DZIF) Partner site Tübingen72076TübingenGermany
| | - Harald Gross
- Pharmaceutical Institute, Dept. of Pharmaceutical BiologyUniversity of TübingenAuf der Morgenstelle 872076TübingenGermany
- German Center for Infection Research (DZIF) Partner site Tübingen72076TübingenGermany
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Ghosh C, Pal S, Patel A, Kapur M. Total Synthesis of the Proposed Structure of Mycobactin J. Org Lett 2018; 20:6511-6515. [DOI: 10.1021/acs.orglett.8b02832] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Chiranjit Ghosh
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462066, Madhya Pradesh, India
| | - Sujit Pal
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462066, Madhya Pradesh, India
| | - Akanksha Patel
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462066, Madhya Pradesh, India
| | - Manmohan Kapur
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462066, Madhya Pradesh, India
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Burke SJ, Gamrat JM, Santhouse JR, Tomares DT, Tomsho JW. Potassium haloalkyltrifluoroborate salts: synthesis, application, and reversible ligand replacement with MIDA. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2015.08.012] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Cherkupally P, Ramesh S, Govender T, Kruger HG, de la Torre BG, Albericio F. An efficient solid-phase strategy for total synthesis of naturally occurring amphiphilic marine siderophores: amphibactin-T and moanachelin ala-B. Org Biomol Chem 2015; 13:4760-8. [PMID: 25806414 DOI: 10.1039/c5ob00100e] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Microorganisms such as bacteria, fungi and some plants secrete an abundance of suites of low molecular weight, high-affinity iron(iii)-chelating acylated siderophores. The peptide composition of a suite of amphiphilic siderophores generated by a Vibrio species, isolated from oligotrophic open ocean water, contained the same iron(iii)-scavenging polar head group and is attached to a fatty acid. In the present study, we report the first total synthesis of the naturally obtainable marine siderophores amphibactin-T and moanachelin ala-B on solid-phase using standard Fmoc-chemistry. Furthermore, we discuss the preparation of orthogonal protected Orn amino acid 'N(α)-Fmoc-N(δ)-(acetyl)-N(δ)-(benzoyloxy)-ornithine' [Fmoc-Orn(Ac,OBz)-OH], which is the most important constructive building block for amphibactin and moanachelin siderophores syntheses. The applications of this Orn unit on solid-phase have also been discussed.
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Affiliation(s)
- Prabhakar Cherkupally
- Catalysis and Peptide Research Unit, School of Health Sciences, University of Kwazulu-Natal, Durban 4001, South Africa.
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Xu X, Zavalij PY, Hu W, Doyle MP. Efficient synthesis of oxazoles by dirhodium(II)-catalyzed reactions of styryl diazoacetate with oximes. Chem Commun (Camb) 2012; 48:11522-4. [PMID: 23093131 PMCID: PMC3829718 DOI: 10.1039/c2cc36537e] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An efficient one-step synthesis of multi-functionalized oxazole derivatives is achieved in high yield by dirhodium(II)-catalyzed reactions of styryl diazoacetate with aryl oximes.
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Affiliation(s)
- Xinfang Xu
- Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, 20742, USA
- Shanghai Engineering Research Center for Molecular Therapeutics and Institute of Drug Discovery and Development, East China Normal University, 3663 Zhongshan Bei Road, Shanghai 200062 (China)
| | - Peter Y. Zavalij
- Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, 20742, USA
| | - Wenhao Hu
- Shanghai Engineering Research Center for Molecular Therapeutics and Institute of Drug Discovery and Development, East China Normal University, 3663 Zhongshan Bei Road, Shanghai 200062 (China)
| | - Michael P. Doyle
- Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, 20742, USA
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Wu C, Miller PA, Miller MJ. Syntheses and studies of amamistatin B analogs reveals that anticancer activity is relatively independent of stereochemistry, ester or amide linkage and select replacement of one of the metal chelating groups. Bioorg Med Chem Lett 2011; 21:2611-5. [PMID: 21315591 PMCID: PMC3081999 DOI: 10.1016/j.bmcl.2011.01.084] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2010] [Revised: 01/18/2011] [Accepted: 01/19/2011] [Indexed: 10/18/2022]
Abstract
A series of analogs of the amamistatin natural products was designed and synthesized to facilitate additional anticancer structure-activity relationships. The results indicate that the anticancer activity is relatively independent of stereochemistry, ester or amide linkage and replacement of the oxazoline/oxazole based iron-binding group with a catechol.
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Affiliation(s)
- Chunrui Wu
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA
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Liu Y, Jacobs HK, Gopalan AS. A new approach to cyclic hydroxamic acids: Intramolecular cyclization of N-benzyloxy carbamates with carbon nucleophiles. Tetrahedron 2011; 67:2206-2214. [PMID: 21499514 DOI: 10.1016/j.tet.2011.01.073] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
N-Alkyl-N-benzyloxy carbamates, 2, undergo facile intramolecular cyclization with a variety of carbon nucleophiles to give functionalized 5- and 6-membered protected cyclic hydroxamic acids, 3, in good to excellent yields. This method can be extended to prepare seven-membered cyclic hydroxamic acids in moderate yields. The sulfone intermediates 3 from this study can be alkylated while the corresponding phosphonates have been shown to undergo HWE reaction. The α,β-unsaturated synthon, 8, prepared by thermal elimination of sulfoxide 3m, undergoes Michael addition with secondary amines. The usefulness of this approach to prepare polydentate chelators has been demonstrated by the synthesis of bis cyclic hydroxamic acids 12, 14, and 15.
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Affiliation(s)
- Yuan Liu
- Department of Chemistry and Biochemistry, MSC 3C, New Mexico State University, Las Cruces, NM 88003-8001
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12
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Herndon JW. The chemistry of the carbon–transition metal double and triple bond: Annual survey covering the year 2009. Coord Chem Rev 2011. [DOI: 10.1016/j.ccr.2010.07.003] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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