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Sung DB, Choi DB, Seol JH, Kang N, Kim EA, Heo SY, Heo SJ, Lee JS. Total Synthesis and Bioactivity Profile of (+)-Ieodomycins A and B and their Stereoisomers. ACS OMEGA 2024; 9:27592-27609. [PMID: 38947812 PMCID: PMC11209911 DOI: 10.1021/acsomega.4c03241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Revised: 05/27/2024] [Accepted: 06/05/2024] [Indexed: 07/02/2024]
Abstract
Herein, we report the first- and second-generation syntheses of (+)-ieodomycins A and B and their stereoisomers via the late-stage elaboration of their conjugated E-diene side chains. Key steps for successful synthesis included Keck asymmetric allylation to introduce a hydroxyl group at the C5 position, consecutive Wipf's carboalumination modification, iodination, Sharpless asymmetric dihydroxylation, one-carbon homologation via cyanation, Mukaiyama lactonization, and Stille cross-coupling to form the conjugated E-diene moiety. Further, the preliminary in vitro bioactivity profile against various disease-related molecular targets and cell lines was investigated. Results indicated that compounds 30b and 30c, diastereoisomers of (+)-ieodomycin B (2), serve as α-glucosidase inhibitors, while compounds 30b and 30d inhibit the angiotensin-converting enzyme.
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Affiliation(s)
- Dan-Bi Sung
- Marine
Natural Products Chemistry Laboratory, Korea
Institute of Ocean Science and Technology (KIOST), Busan 49111, Republic of Korea
| | - Du-Bong Choi
- Marine
Natural Products Chemistry Laboratory, Korea
Institute of Ocean Science and Technology (KIOST), Busan 49111, Republic of Korea
| | - Jae Hee Seol
- Marine
Natural Products Chemistry Laboratory, Korea
Institute of Ocean Science and Technology (KIOST), Busan 49111, Republic of Korea
| | - Nalae Kang
- Jeju
Bio Research Center, Korea Institute of
Ocean Science & Technology (KIOST), Jeju 63349, Republic of Korea
| | - Eun-A Kim
- Jeju
Bio Research Center, Korea Institute of
Ocean Science & Technology (KIOST), Jeju 63349, Republic of Korea
| | - Seong-Yeong Heo
- Jeju
Bio Research Center, Korea Institute of
Ocean Science & Technology (KIOST), Jeju 63349, Republic of Korea
| | - Soo-Jin Heo
- Jeju
Bio Research Center, Korea Institute of
Ocean Science & Technology (KIOST), Jeju 63349, Republic of Korea
- Department
of Marine Technology & Convergence Engineering, Korea University of Science and Technology, Daejeon 34113, Republic of Korea
| | - Jong Seok Lee
- Marine
Natural Products Chemistry Laboratory, Korea
Institute of Ocean Science and Technology (KIOST), Busan 49111, Republic of Korea
- Department
of Marine Technology & Convergence Engineering, Korea University of Science and Technology, Daejeon 34113, Republic of Korea
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2
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Spindler S, Wingen LM, Schönenbroicher M, Seul M, Adamek M, Essig S, Kurz M, Ziemert N, Menche D. Modular Fragment Synthesis and Bioinformatic Analysis Propose a Revised Vancoresmycin Stereoconfiguration. Org Lett 2021; 23:1175-1180. [PMID: 33356317 DOI: 10.1021/acs.orglett.0c03957] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Elaborate fragments of the proposed stereostructure of the complex polyketide antibiotic vancoresmycin have been synthesized in a stereoselective fashion based on a modular and convergent approach. Significant nuclear magnetic resonance differences in one of these subunits compared with the natural product question the proposed stereoconfiguration. Consequently, an extensive bioinformatics analysis of the biosynthetic gene cluster was carried out, leading to a revised stereoconfigurational proposal for this highly potent antibiotic.
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Affiliation(s)
- Stefanie Spindler
- Kekulé-Institut für Organische Chemie und Biochemie, Universität Bonn, Gerhard-Domagk-Str. 1, D-53121 Bonn, Germany
| | - Lukas M Wingen
- Kekulé-Institut für Organische Chemie und Biochemie, Universität Bonn, Gerhard-Domagk-Str. 1, D-53121 Bonn, Germany
| | - Max Schönenbroicher
- Kekulé-Institut für Organische Chemie und Biochemie, Universität Bonn, Gerhard-Domagk-Str. 1, D-53121 Bonn, Germany
| | - Maximilian Seul
- Kekulé-Institut für Organische Chemie und Biochemie, Universität Bonn, Gerhard-Domagk-Str. 1, D-53121 Bonn, Germany
| | - Martina Adamek
- Interfaculty Institute of Microbiology and Infection Medicine, German Centre for Infection Research (DZIF), Partnersite Tuebingen, Auf der Morgenstelle 28, D-72076 Tübingen, Germany
| | | | - Michael Kurz
- Sanofi-Aventis Deutschland GmbH, Industriepark Höchst, D-65926 Frankfurt am Main, Germany
| | - Nadine Ziemert
- Interfaculty Institute of Microbiology and Infection Medicine, German Centre for Infection Research (DZIF), Partnersite Tuebingen, Auf der Morgenstelle 28, D-72076 Tübingen, Germany
| | - Dirk Menche
- Kekulé-Institut für Organische Chemie und Biochemie, Universität Bonn, Gerhard-Domagk-Str. 1, D-53121 Bonn, Germany
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3
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Shin I, Krische MJ. Asymmetric Iridium-Catalyzed C-C Coupling of Chiral Diols via Site-Selective Redox-Triggered Carbonyl Addition. Top Curr Chem (Cham) 2016; 372:85-101. [PMID: 26187028 PMCID: PMC4716893 DOI: 10.1007/128_2015_651] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Abstract
Cyclometalated π-allyliridium C,O-benzoate complexes modified by axially chiral chelating phosphine ligands display a pronounced kinetic preference for primary alcohol dehydrogenation, enabling highly site-selective redox-triggered carbonyl additions of chiral primary-secondary 1,3-diols with exceptional levels of catalyst-directed diastereoselectivity. Unlike conventional methods for carbonyl allylation, the present redox-triggered alcohol C-H functionalizations bypass the use of protecting groups, premetalated reagents, and discrete alcohol-to-aldehyde redox reactions.
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Affiliation(s)
- Inji Shin
- Department of Chemistry, University of Texas at Austin, 1 University Station - A5300, Austin, TX, 78712-1167, USA
| | - Michael J Krische
- Department of Chemistry, University of Texas at Austin, 1 University Station - A5300, Austin, TX, 78712-1167, USA.
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4
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Lei H, Yan J, Yu J, Liu Y, Wang Z, Xu Z, Ye T. Total Synthesis and Stereochemical Reassignment of Mandelalide A. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201403542] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Honghui Lei
- Laboratory of Chemical Genomics, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Xili, Nanshan District, Shenzhen, 518055 (China)
| | - Jialei Yan
- Laboratory of Chemical Genomics, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Xili, Nanshan District, Shenzhen, 518055 (China)
| | - Jie Yu
- Laboratory of Chemical Genomics, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Xili, Nanshan District, Shenzhen, 518055 (China)
| | - Yuqing Liu
- Department of Applied Biology & Chemical Technology, The Hong Kong Polytechnic University, Kowloon, Hong Kong (China)
| | - Zhuo Wang
- Department of Applied Biology & Chemical Technology, The Hong Kong Polytechnic University, Kowloon, Hong Kong (China)
| | - Zhengshuang Xu
- Laboratory of Chemical Genomics, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Xili, Nanshan District, Shenzhen, 518055 (China)
| | - Tao Ye
- Department of Applied Biology & Chemical Technology, The Hong Kong Polytechnic University, Kowloon, Hong Kong (China)
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5
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Lei H, Yan J, Yu J, Liu Y, Wang Z, Xu Z, Ye T. Total Synthesis and Stereochemical Reassignment of Mandelalide A. Angew Chem Int Ed Engl 2014; 53:6533-7. [DOI: 10.1002/anie.201403542] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2014] [Indexed: 11/08/2022]
Affiliation(s)
- Honghui Lei
- Laboratory of Chemical Genomics, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Xili, Nanshan District, Shenzhen, 518055 (China)
| | - Jialei Yan
- Laboratory of Chemical Genomics, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Xili, Nanshan District, Shenzhen, 518055 (China)
| | - Jie Yu
- Laboratory of Chemical Genomics, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Xili, Nanshan District, Shenzhen, 518055 (China)
| | - Yuqing Liu
- Department of Applied Biology & Chemical Technology, The Hong Kong Polytechnic University, Kowloon, Hong Kong (China)
| | - Zhuo Wang
- Department of Applied Biology & Chemical Technology, The Hong Kong Polytechnic University, Kowloon, Hong Kong (China)
| | - Zhengshuang Xu
- Laboratory of Chemical Genomics, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Xili, Nanshan District, Shenzhen, 518055 (China)
| | - Tao Ye
- Department of Applied Biology & Chemical Technology, The Hong Kong Polytechnic University, Kowloon, Hong Kong (China)
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6
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Wan ZL, Zhang GL, Chen HJ, Wu Y, Li Y. A Chiral Pool and Cross Metathesis Based Synthesis of Gingerdiols. European J Org Chem 2014. [DOI: 10.1002/ejoc.201301727] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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7
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Madden KS, Mosa FA, Whiting A. Non-isoprenoid polyene natural products – structures and synthetic strategies. Org Biomol Chem 2014; 12:7877-99. [DOI: 10.1039/c4ob01337a] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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8
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Kobayashi S, Endo T, Yoshino T, Schneider U, Ueno M. Allylation reactions of aldehydes with allylboronates in aqueous media: unique reactivity and selectivity that are only observed in the presence of water. Chem Asian J 2013; 8:2033-45. [PMID: 23775867 DOI: 10.1002/asia.201300440] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2013] [Indexed: 11/07/2022]
Abstract
Zn(OH)2-catalyzed allylation reactions of aldehydes with allylboronates in aqueous media have been developed. In contrast to conventional allylboration reactions of aldehydes in organic solvents, the α-addition products were obtained exclusively. A catalytic cycle in which the allylzinc species was generated through a B-to-Zn exchange process is proposed and kinetic studies were performed. The key intermediate, an allylzinc species, was detected by HRMS (ESI) analysis and by online continuous MS (ESI) analysis. This analysis revealed that, in aqueous media, the allylzinc species competitively reacted with the aldehydes and water. An investigation of the reactivity and selectivity of the allylzinc species by using several typical allylboronates (6a-6d) clarified several important roles of water in this allylation reaction. The allylation reactions of aldehydes with allylboronic acid 2,2-dimethyl-1,3-propanediol esters proceeded smoothly in the presence of catalytic amounts of Zn(OH)2 and achiral ligand 4d in aqueous media to afford the corresponding syn-adducts in high yields with high diastereoselectivities. In all cases, the α-addition products were obtained and a wide substrate scope was tolerated. Furthermore, this reaction was applied to asymmetric catalysis by using chiral ligand 9. Based on the X-ray structure of the Zn-9 complex, several nonsymmetrical chiral ligands were also found to be effective. This reaction was further applied to catalytic asymmetric alkylallylation, chloroallylation, and alkoxyallylation processes and the synthetic utility of these reactions has been demonstrated.
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Affiliation(s)
- Shū Kobayashi
- Department of Chemistry, School of Science, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
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9
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Dechert-Schmitt AMR, Schmitt DC, Krische MJ. Protecting-Group-Free Diastereoselective CC Coupling of 1,3-Glycols and Allyl Acetate through Site-Selective Primary Alcohol Dehydrogenation. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201209863] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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10
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Dechert-Schmitt AMR, Schmitt DC, Krische MJ. Protecting-group-free diastereoselective C-C coupling of 1,3-glycols and allyl acetate through site-selective primary alcohol dehydrogenation. Angew Chem Int Ed Engl 2013; 52:3195-8. [PMID: 23364927 DOI: 10.1002/anie.201209863] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2012] [Indexed: 11/07/2022]
Affiliation(s)
- Anne-Marie R Dechert-Schmitt
- University of Texas at Austin, Department of Chemistry and Biochemistry, 1 University Station-A5300, Austin, TX 78712-1167, USA
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11
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Wang L, Menche D. Concise Synthesis of Acetal-Protectedsyn1,3-Diols by a Tandem Hemiacetal Formation/Tsuji-Trost Reaction. Angew Chem Int Ed Engl 2012; 51:9425-7. [DOI: 10.1002/anie.201203911] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2012] [Indexed: 11/06/2022]
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12
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Wang L, Menche D. Kurze Synthese von Acetal-geschützten 1,3-syn-Diolen durch einen Tandemprozess aus Halbacetalbildung und Tsuji-Trost-Reaktion. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201203911] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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13
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Dias LC, Polo EC, Ferreira MAB, Tormena CF. 1,5-Stereoinduction in Boron-Mediated Aldol Reactions of β,δ-Bisalkoxy Methylketones Containing Cyclic Protecting Groups. J Org Chem 2012; 77:3766-92. [DOI: 10.1021/jo300125d] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Luiz C. Dias
- Chemistry Institute, State University of Campinas, UNICAMP, 13083-970, P.O. Box 6154, Campinas,
SP, Brazil
| | - Ellen C. Polo
- Chemistry Institute, State University of Campinas, UNICAMP, 13083-970, P.O. Box 6154, Campinas,
SP, Brazil
| | - Marco A. B. Ferreira
- Chemistry Institute, State University of Campinas, UNICAMP, 13083-970, P.O. Box 6154, Campinas,
SP, Brazil
| | - Cláudio F. Tormena
- Chemistry Institute, State University of Campinas, UNICAMP, 13083-970, P.O. Box 6154, Campinas,
SP, Brazil
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14
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Evans PA, Grisin A, Lawler MJ. Diastereoselective Construction of syn-1,3-Dioxanes via a Bismuth-Mediated Two-Component Hemiacetal/Oxa-Conjugate Addition Reaction. J Am Chem Soc 2012; 134:2856-9. [DOI: 10.1021/ja208668u] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- P. Andrew Evans
- Department of Chemistry, The University of Liverpool, Crown Street, Liverpool
L69 7ZD, United Kingdom
| | - Aleksandr Grisin
- Department of Chemistry, The University of Liverpool, Crown Street, Liverpool
L69 7ZD, United Kingdom
| | - Michael J. Lawler
- Department
of Chemistry, Indiana University, 800 East
Kirkwood Avenue, Bloomington,
Indiana 47405, United States
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15
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Borg T, Tuzina P, Somfai P. Lewis acid-promoted addition of 1,3-bis(silyl)propenes to aldehydes: a route to 1,3-dienes. J Org Chem 2011; 76:8070-5. [PMID: 21875048 DOI: 10.1021/jo2013466] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The Lewis acid-promoted addition of 1,3-bis(silyl)propenes to aldehydes to provide the corresponding (E)-1,3-dienes in excellent stereoselectivity and good to excellent yields is reported. The procedure is mild, base-free, and operationally straightforward.
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Affiliation(s)
- Tessie Borg
- KTH Chemical Science and Engineering, Organic Chemistry Royal Institute of Technology, S-100 44 Stockholm, Sweden
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16
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Wang Y, Xing Y, Zhang Q, O'Doherty GA. De novo synthesis of natural products via the asymmetric hydration of polyenes. Chem Commun (Camb) 2011; 47:8493-505. [PMID: 21559534 PMCID: PMC5815319 DOI: 10.1039/c1cc11791b] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
For the last ten years our group has been working toward the development of an asymmetric hydration approach to polyketide natural products based on the regioselective hydration of di- and tri-enoates. Key to the success of this approach is the recognition that both high regiocontrol and asymmetric induction could be obtained by the use of a Sharpless asymmetric dihydroxylation reaction. Herein we describe the development of the method and its application to natural product total synthesis.
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Affiliation(s)
- Yanping Wang
- Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts, USA
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17
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Herndon JW. The chemistry of the carbon–transition metal double and triple bond: Annual survey covering the year 2009. Coord Chem Rev 2011. [DOI: 10.1016/j.ccr.2010.07.003] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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18
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McGowan MA, Stevenson CP, Schiffler MA, Jacobsen EN. An enantioselective total synthesis of (+)-peloruside A. Angew Chem Int Ed Engl 2010; 49:6147-50. [PMID: 20586089 PMCID: PMC2993561 DOI: 10.1002/anie.201002177] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Meredeth A. McGowan
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford St., Cambridge, MA 02138
| | - Christian P. Stevenson
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford St., Cambridge, MA 02138
| | - Matthew A. Schiffler
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford St., Cambridge, MA 02138
| | - Eric N. Jacobsen
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford St., Cambridge, MA 02138, Fax: (+1) 617-496-1880
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McGowan M, Stevenson C, Schiffler M, Jacobsen E. An Enantioselective Total Synthesis of (+)-Peloruside A. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.201002177] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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