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For: Rymarquis LA, Kastenmayer JP, Hüttenhofer AG, Green PJ. Diamonds in the rough: mRNA-like non-coding RNAs. Trends Plant Sci 2008;13:329-34. [PMID: 18448381 DOI: 10.1016/j.tplants.2008.02.009] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2008] [Revised: 02/19/2008] [Accepted: 02/21/2008] [Indexed: 05/20/2023]
Number Cited by Other Article(s)
1
Hazra S, Moulick D, Mukherjee A, Sahib S, Chowardhara B, Majumdar A, Upadhyay MK, Yadav P, Roy P, Santra SC, Mandal S, Nandy S, Dey A. Evaluation of efficacy of non-coding RNA in abiotic stress management of field crops: Current status and future prospective. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023;203:107940. [PMID: 37738864 DOI: 10.1016/j.plaphy.2023.107940] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 07/23/2023] [Accepted: 08/04/2023] [Indexed: 09/24/2023]
2
Li W, Zhao P, Sun J, Yu X, Zou L, Li S, Di R, Ruan M, Peng M. Biological function research of Fusarium oxysporum f. sp. cubense inducible banana long noncoding RNA Malnc2310 in Arabidopsis. PLANT MOLECULAR BIOLOGY 2023:10.1007/s11103-023-01360-6. [PMID: 37507516 DOI: 10.1007/s11103-023-01360-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 05/20/2023] [Indexed: 07/30/2023]
3
Palos K, Yu L, Railey CE, Nelson Dittrich AC, Nelson ADL. Linking discoveries, mechanisms, and technologies to develop a clearer perspective on plant long noncoding RNAs. THE PLANT CELL 2023;35:1762-1786. [PMID: 36738093 PMCID: PMC10226578 DOI: 10.1093/plcell/koad027] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Revised: 12/19/2022] [Accepted: 12/22/2022] [Indexed: 05/30/2023]
4
Amiri F, Moghadam A, Tahmasebi A, Niazi A. Identification of key genes involved in secondary metabolite biosynthesis in Digitalis purpurea. PLoS One 2023;18:e0277293. [PMID: 36893121 PMCID: PMC9997893 DOI: 10.1371/journal.pone.0277293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Accepted: 10/25/2022] [Indexed: 03/10/2023]  Open
5
Genome-wide identification and characterization of long noncoding RNAs during peach (Prunus persica) fruit development and ripening. Sci Rep 2022;12:11044. [PMID: 35773470 PMCID: PMC9247041 DOI: 10.1038/s41598-022-15330-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Accepted: 06/22/2022] [Indexed: 11/17/2022]  Open
6
Identification of Long Non-Coding RNAs Associated with Tomato Fruit Expansion and Ripening by Strand-Specific Paired-End RNA Sequencing. HORTICULTURAE 2021. [DOI: 10.3390/horticulturae7120522] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
7
Li C, Wang M, Qiu X, Zhou H, Lu S. Noncoding RNAs in Medicinal Plants and their Regulatory Roles in Bioactive Compound Production. Curr Pharm Biotechnol 2021;22:341-359. [PMID: 32469697 DOI: 10.2174/1389201021666200529101942] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2019] [Revised: 02/14/2020] [Accepted: 03/30/2020] [Indexed: 11/22/2022]
8
Fukuda M, Fujiwara T, Nishida S. Roles of Non-Coding RNAs in Response to Nitrogen Availability in Plants. Int J Mol Sci 2020;21:ijms21228508. [PMID: 33198163 PMCID: PMC7696010 DOI: 10.3390/ijms21228508] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Revised: 11/06/2020] [Accepted: 11/10/2020] [Indexed: 01/06/2023]  Open
9
Leng Y, Sun J, Wang J, Liu H, Zheng H, Zhang M, Zhao H, Zou D. Genome-wide lncRNAs identification and association analysis for cold-responsive genes at the booting stage in rice (Oryza sativa L.). THE PLANT GENOME 2020;13:e20020. [PMID: 33016612 DOI: 10.1002/tpg2.20020] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 03/03/2020] [Accepted: 03/28/2020] [Indexed: 05/26/2023]
10
Yu F, Tan Z, Fang T, Tang K, Liang K, Qiu F. A Comprehensive Transcriptomics Analysis Reveals Long Non-Coding RNA to be Involved in the Key Metabolic Pathway in Response to Waterlogging Stress in Maize. Genes (Basel) 2020;11:genes11030267. [PMID: 32121334 PMCID: PMC7140884 DOI: 10.3390/genes11030267] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Revised: 02/24/2020] [Accepted: 02/27/2020] [Indexed: 12/17/2022]  Open
11
Fan H, Quan S, Qi S, Xu N, Wang Y. Novel Aspects of Nitrate Regulation in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2020;11:574246. [PMID: 33362808 PMCID: PMC7758431 DOI: 10.3389/fpls.2020.574246] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Accepted: 11/18/2020] [Indexed: 05/04/2023]
12
Liu F, Xu Y, Chang K, Li S, Liu Z, Qi S, Jia J, Zhang M, Crawford NM, Wang Y. The long noncoding RNA T5120 regulates nitrate response and assimilation in Arabidopsis. THE NEW PHYTOLOGIST 2019;224:117-131. [PMID: 31264223 DOI: 10.1111/nph.16038] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Accepted: 06/20/2019] [Indexed: 05/19/2023]
13
Datta R, Paul S. Long non-coding RNAs: Fine-tuning the developmental responses in plants. J Biosci 2019. [DOI: 10.1007/s12038-019-9910-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
14
Tang Z, Xu M, Cai J, Ma X, Qin J, Meng Y. Transcriptome-wide identification and functional investigation of the RDR2- and DCL3-dependent small RNAs encoded by long non-coding RNAs in Arabidopsis thaliana. PLANT SIGNALING & BEHAVIOR 2019;14:1616518. [PMID: 31081714 PMCID: PMC6619916 DOI: 10.1080/15592324.2019.1616518] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Revised: 04/29/2019] [Accepted: 05/02/2019] [Indexed: 06/09/2023]
15
Bai Y, Dai X, Li Y, Wang L, Li W, Liu Y, Cheng Y, Qin Y. Identification and characterization of pineapple leaf lncRNAs in crassulacean acid metabolism (CAM) photosynthesis pathway. Sci Rep 2019;9:6658. [PMID: 31040312 PMCID: PMC6491598 DOI: 10.1038/s41598-019-43088-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2018] [Accepted: 04/11/2019] [Indexed: 01/08/2023]  Open
16
Wang HLV, Chekanova JA. An Overview of Methodologies in Studying lncRNAs in the High-Throughput Era: When Acronyms ATTACK! Methods Mol Biol 2019;1933:1-30. [PMID: 30945176 PMCID: PMC6684206 DOI: 10.1007/978-1-4939-9045-0_1] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
17
Huang L, Dong H, Zhou D, Li M, Liu Y, Zhang F, Feng Y, Yu D, Lin S, Cao J. Systematic identification of long non-coding RNAs during pollen development and fertilization in Brassica rapa. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018;96:203-222. [PMID: 29975432 DOI: 10.1111/tpj.14016] [Citation(s) in RCA: 72] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2018] [Revised: 06/18/2018] [Accepted: 06/26/2018] [Indexed: 05/21/2023]
18
Deng F, Zhang X, Wang W, Yuan R, Shen F. Identification of Gossypium hirsutum long non-coding RNAs (lncRNAs) under salt stress. BMC PLANT BIOLOGY 2018;18:23. [PMID: 29370759 PMCID: PMC5785843 DOI: 10.1186/s12870-018-1238-0] [Citation(s) in RCA: 89] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2017] [Accepted: 01/17/2018] [Indexed: 05/22/2023]
19
Shumayla, Sharma S, Taneja M, Tyagi S, Singh K, Upadhyay SK. Survey of High Throughput RNA-Seq Data Reveals Potential Roles for lncRNAs during Development and Stress Response in Bread Wheat. FRONTIERS IN PLANT SCIENCE 2017;8:1019. [PMID: 28649263 PMCID: PMC5465302 DOI: 10.3389/fpls.2017.01019] [Citation(s) in RCA: 64] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2017] [Accepted: 05/29/2017] [Indexed: 09/01/2023]
20
Yamada M. Functions of long intergenic non-coding (linc) RNAs in plants. JOURNAL OF PLANT RESEARCH 2017;130:67-73. [PMID: 27999969 DOI: 10.1007/s10265-016-0894-0] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2016] [Accepted: 11/28/2016] [Indexed: 05/08/2023]
21
Gao R, Liu P, Irwanto N, Loh DR, Wong SM. Upregulation of LINC-AP2 is negatively correlated with AP2 gene expression with Turnip crinkle virus infection in Arabidopsis thaliana. PLANT CELL REPORTS 2016;35:2257-2267. [PMID: 27473526 DOI: 10.1007/s00299-016-2032-9] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2016] [Accepted: 07/25/2016] [Indexed: 05/23/2023]
22
Zhang G, Duan A, Zhang J, He C. Genome-wide analysis of long non-coding RNAs at the mature stage of sea buckthorn (Hippophae rhamnoides Linn) fruit. Gene 2016;596:130-136. [PMID: 27751814 DOI: 10.1016/j.gene.2016.10.017] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2016] [Revised: 10/03/2016] [Accepted: 10/13/2016] [Indexed: 01/05/2023]
23
Genome-Wide Identification and Characterization of Long Non-Coding RNAs from Mulberry (Morus notabilis) RNA-seq Data. Genes (Basel) 2016;7:genes7030011. [PMID: 26938562 PMCID: PMC4808792 DOI: 10.3390/genes7030011] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2015] [Revised: 02/19/2016] [Accepted: 02/22/2016] [Indexed: 01/08/2023]  Open
24
Wang J, Yu W, Yang Y, Li X, Chen T, Liu T, Ma N, Yang X, Liu R, Zhang B. Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection. Sci Rep 2015;5:16946. [PMID: 26679690 PMCID: PMC4683531 DOI: 10.1038/srep16946] [Citation(s) in RCA: 132] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2015] [Accepted: 10/22/2015] [Indexed: 12/19/2022]  Open
25
PLNlncRbase: A resource for experimentally identified lncRNAs in plants. Gene 2015. [DOI: 10.1016/j.gene.2015.07.069] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
26
Zhu B, Yang Y, Li R, Fu D, Wen L, Luo Y, Zhu H. RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening. JOURNAL OF EXPERIMENTAL BOTANY 2015;66:4483-95. [PMID: 25948705 PMCID: PMC4507755 DOI: 10.1093/jxb/erv203] [Citation(s) in RCA: 140] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
27
Li D, Shao F, Lu S. Identification and characterization of mRNA-like noncoding RNAs in Salvia miltiorrhiza. PLANTA 2015;241:1131-43. [PMID: 25601000 DOI: 10.1007/s00425-015-2246-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2014] [Accepted: 01/09/2015] [Indexed: 05/20/2023]
28
Liu J, Wang H, Chua NH. Long noncoding RNA transcriptome of plants. PLANT BIOTECHNOLOGY JOURNAL 2015;13:319-28. [PMID: 25615265 DOI: 10.1111/pbi.12336] [Citation(s) in RCA: 169] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2014] [Revised: 12/09/2014] [Accepted: 12/16/2014] [Indexed: 05/20/2023]
29
Wang M, Wu B, Chen C, Lu S. Identification of mRNA-like non-coding RNAs and validation of a mighty one named MAR in Panax ginseng. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2015;57:256-70. [PMID: 25040236 DOI: 10.1111/jipb.12239] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2014] [Accepted: 07/03/2014] [Indexed: 05/11/2023]
30
Inoue H, Yoshimura J, Iwabuchi K. Gene expression of protein-coding and non-coding RNAs related to polyembryogenesis in the parasitic wasp, Copidosoma floridanum. PLoS One 2014;9:e114372. [PMID: 25469914 PMCID: PMC4255003 DOI: 10.1371/journal.pone.0114372] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2014] [Accepted: 11/06/2014] [Indexed: 11/18/2022]  Open
31
tasiRNA-ARF pathway moderates floral architecture in Arabidopsis plants subjected to drought stress. BIOMED RESEARCH INTERNATIONAL 2014;2014:303451. [PMID: 25243128 PMCID: PMC4160631 DOI: 10.1155/2014/303451] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/22/2014] [Revised: 07/11/2014] [Accepted: 07/14/2014] [Indexed: 11/17/2022]
32
Li J, Wu B, Xu J, Liu C. Genome-wide identification and characterization of long intergenic non-coding RNAs in Ganoderma lucidum. PLoS One 2014;9:e99442. [PMID: 24932683 PMCID: PMC4059649 DOI: 10.1371/journal.pone.0099442] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2014] [Accepted: 05/14/2014] [Indexed: 12/26/2022]  Open
33
Zhang W, Han Z, Guo Q, Liu Y, Zheng Y, Wu F, Jin W. Identification of maize long non-coding RNAs responsive to drought stress. PLoS One 2014;9:e98958. [PMID: 24892290 PMCID: PMC4044008 DOI: 10.1371/journal.pone.0098958] [Citation(s) in RCA: 107] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2014] [Accepted: 05/09/2014] [Indexed: 01/20/2023]  Open
34
Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MMS, Scanlon MJ, Yu J, Schnable PS, Timmermans MCP, Springer NM, Muehlbauer GJ. Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biol 2014;15:R40. [PMID: 24576388 PMCID: PMC4053991 DOI: 10.1186/gb-2014-15-2-r40] [Citation(s) in RCA: 319] [Impact Index Per Article: 31.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2013] [Accepted: 02/27/2014] [Indexed: 11/10/2022]  Open
35
Arabidopsis non-coding RNA regulation in abiotic stress responses. Int J Mol Sci 2013;14:22642-54. [PMID: 24252906 PMCID: PMC3856082 DOI: 10.3390/ijms141122642] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2013] [Revised: 10/31/2013] [Accepted: 10/31/2013] [Indexed: 12/31/2022]  Open
36
Jin J, Liu J, Wang H, Wong L, Chua NH. PLncDB: plant long non-coding RNA database. Bioinformatics 2013;29:1068-71. [PMID: 23476021 DOI: 10.1093/bioinformatics/btt107] [Citation(s) in RCA: 119] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
37
Chen C, Retzel EF. Analyzing the meiotic transcriptome using isolated meiocytes of Arabidopsis thaliana. Methods Mol Biol 2013;990:203-13. [PMID: 23559216 DOI: 10.1007/978-1-62703-333-6_20] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
38
Qu Z, Adelson DL. Evolutionary conservation and functional roles of ncRNA. Front Genet 2012;3:205. [PMID: 23087702 PMCID: PMC3466565 DOI: 10.3389/fgene.2012.00205] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2012] [Accepted: 09/24/2012] [Indexed: 11/24/2022]  Open
39
Banks IR, Zhang Y, Wiggins BE, Heck GR, Ivashuta S. RNA decoys: an emerging component of plant regulatory networks? PLANT SIGNALING & BEHAVIOR 2012;7:1188-93. [PMID: 22899065 PMCID: PMC3489658 DOI: 10.4161/psb.21299] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
40
Gómez G, Pallas V. Studies on subcellular compartmentalization of plant pathogenic noncoding RNAs give new insights into the intracellular RNA-traffic mechanisms. PLANT PHYSIOLOGY 2012;159:558-64. [PMID: 22474218 PMCID: PMC3375924 DOI: 10.1104/pp.112.195214] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2012] [Accepted: 04/02/2012] [Indexed: 05/22/2023]
41
Niazi F, Valadkhan S. Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs. RNA (NEW YORK, N.Y.) 2012;18:825-43. [PMID: 22361292 PMCID: PMC3312569 DOI: 10.1261/rna.029520.111] [Citation(s) in RCA: 115] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
42
Molecular Functions of Long Non-Coding RNAs in Plants. Genes (Basel) 2012;3:176-90. [PMID: 24704849 PMCID: PMC3899965 DOI: 10.3390/genes3010176] [Citation(s) in RCA: 101] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2012] [Revised: 02/28/2012] [Accepted: 02/29/2012] [Indexed: 11/16/2022]  Open
43
Wu B, Li Y, Yan H, Ma Y, Luo H, Yuan L, Chen S, Lu S. Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea. BMC Genomics 2012;13:15. [PMID: 22233149 PMCID: PMC3269984 DOI: 10.1186/1471-2164-13-15] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2011] [Accepted: 01/10/2012] [Indexed: 11/10/2022]  Open
44
Guleria P, Mahajan M, Bhardwaj J, Yadav SK. Plant small RNAs: biogenesis, mode of action and their roles in abiotic stresses. GENOMICS, PROTEOMICS & BIOINFORMATICS 2011;9:183-99. [PMID: 22289475 PMCID: PMC5054152 DOI: 10.1016/s1672-0229(11)60022-3] [Citation(s) in RCA: 94] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/07/2011] [Accepted: 10/21/2011] [Indexed: 01/01/2023]
45
Lee YCG, Reinhardt JA. Widespread polymorphism in the positions of stop codons in Drosophila melanogaster. Genome Biol Evol 2011;4:533-49. [PMID: 22051795 PMCID: PMC3342867 DOI: 10.1093/gbe/evr113] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/28/2011] [Indexed: 12/19/2022]  Open
46
Jackowiak P, Nowacka M, Strozycki PM, Figlerowicz M. RNA degradome--its biogenesis and functions. Nucleic Acids Res 2011;39:7361-70. [PMID: 21653558 PMCID: PMC3177198 DOI: 10.1093/nar/gkr450] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
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Martínez G, Forment J, Llave C, Pallás V, Gómez G. High-throughput sequencing, characterization and detection of new and conserved cucumber miRNAs. PLoS One 2011;6:e19523. [PMID: 21603611 PMCID: PMC3095615 DOI: 10.1371/journal.pone.0019523] [Citation(s) in RCA: 82] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2011] [Accepted: 03/31/2011] [Indexed: 11/21/2022]  Open
48
Chen CJ, Zhou H, Chen YQ, Qu LH, Gautheret D. Plant noncoding RNA gene discovery by "single-genome comparative genomics". RNA (NEW YORK, N.Y.) 2011;17:390-400. [PMID: 21220549 PMCID: PMC3039139 DOI: 10.1261/rna.2426511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
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Gómez G, Pallás V. Can the import of mRNA into chloroplasts be mediated by a secondary structure of a small non-coding RNA? PLANT SIGNALING & BEHAVIOR 2010;5. [PMID: 21057208 PMCID: PMC3115271 DOI: 10.4161/psb.5.11.13711] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
50
Gómez G, Pallás V. Can the import of mRNA into chloroplasts be mediated by a secondary structure of a small non-coding RNA? PLANT SIGNALING & BEHAVIOR 2010;5:1517-9. [PMID: 21057208 PMCID: PMC3115271 DOI: 10.1371/journal.pone.0012269] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2010] [Accepted: 09/21/2010] [Indexed: 04/24/2023]
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