Quantifying Tropical Plant Diversity Requires an Integrated Technological Approach

Applying image clustering to phylogenetic analysis: A trial

•Molecular phylogenetic analysis can be supplemented by image clustering analysis that uses pretrained machine learning tools.

Evaluating the impact of roads on the diversity pattern and density of trees to improve the conservation of species

Roadside trees alter biotic and abiotic factors of plants diversity in an ecosystem. Rows of plants grow along the roadside due to the interplay between the arrival of propagule and seedling establishment, which depends on the road's specifications, land pattern, and road administration and protection practices. A field study was conducted to measure the roadside tree diversity in the city of Karachi (Pakistan). A total of 180 plots, divided into three primary road groups, were surveyed. The highest quantity of tree biomass per unit area was found on wide roads, followed by medium roads. On narrow roads, the least biomass was detected. A single species or a limited number of species dominated the tree community. Conocarpus erectus was the most dominant non-native species on all types of sidewalks or roadsides, followed by Guaiacum officinale. A total of 76 species (32 non-natives and 44 natives) that were selectively spread along the roadsides of the city were studied. There was a significant difference in phylogenetic diversity (PD), phylogenetic mean pairwise distance (MPD), and phylogenetic mean nearest taxon distance (MNTD) among wide, medium, and narrow roads. Management practices have a significant positive correlation with diversity indices. Our study identified patterns of diversity in roadside trees in Karachi. It provides the basis for future planning for plant protection, such as the protection of plant species, the maintenance of plant habitats, and the coordination of plant management in Karachi.

Contribution of the Brazilian National Forest Inventory to the knowledge of Cerrado woody flora

Abstract: The National Forest Inventory (Inventário Florestal Nacional-IFN) is a large initiative that uses standardised methods to survey Brazilian forestry resources. One target of the IFN is the Cerrado, which contains one of the richest floras in the world. The aim of this study was to assess the contribution of the IFN to the knowledge of Cerrado woody flora. We analysed data from field-collected vouchers sampled by the IFN Cerrado. We restricted our analyses to IFN collections of native trees and shrubs, including palms, which were identified at the species level. Habitat of each collection was obtained by overlaying specimens’ geographic coordinates with land cover maps available in the Mapbiomas platform. Our final dataset comprised 28,602 specimens distributed in 2,779 sites (conglomerates) in Bahia, Distrito Federal, Goiás, Maranhão, Mato Grosso, Mato Grosso do Sul, Minas Gerais, Piauí, São Paulo and Tocantins. Collections were located in the following habitats: savannas (40.5%), forests (30.2%), anthropic areas (25.6%), grasslands (3.5%), and water (0.2%). We recorded 1,822 species belonging to 543 genera and 105 families, representing 34% of Cerrado woody species recorded on Flora do Brasil 2020. Fabaceae had the largest number of species, while Tapirira guianensis and Matayba guianensis were the most collected species. We highlight 60 potentially new records of occurrence for several states and 64 new records for the Cerrado, primarily in riparian forests where species from other biomes occur. In addition, 232 recorded species are Cerrado endemics, while 36 are cited in the CNCFlora’s red list as endangered. The systematic sampling carried out by the IFN enabled vegetation sampling in remote and poorly known areas, which expanded the geographic range of many woody species and contributed to the knowledge of plant diversity in the Cerrado.

Amazon tree dominance across forest strata

The forests of Amazonia are among the most biodiverse plant communities on Earth. Given the immediate threats posed by climate and land-use change, an improved understanding of how this extraordinary biodiversity is spatially organized is urgently required to develop effective conservation strategies. Most Amazonian tree species are extremely rare but a few are common across the region. Indeed, just 227 'hyperdominant' species account for >50% of all individuals >10 cm diameter at 1.3 m in height. Yet, the degree to which the phenomenon of hyperdominance is sensitive to tree size, the extent to which the composition of dominant species changes with size class and how evolutionary history constrains tree hyperdominance, all remain unknown. Here, we use a large floristic dataset to show that, while hyperdominance is a universal phenomenon across forest strata, different species dominate the forest understory, midstory and canopy. We further find that, although species belonging to a range of phylogenetically dispersed lineages have become hyperdominant in small size classes, hyperdominants in large size classes are restricted to a few lineages. Our results demonstrate that it is essential to consider all forest strata to understand regional patterns of dominance and composition in Amazonia. More generally, through the lens of 654 hyperdominant species, we outline a tractable pathway for understanding the functioning of half of Amazonian forests across vertical strata and geographical locations.

Revisiting the hyperdominance of Neotropical tree species under a taxonomic, functional and evolutionary perspective

Recent studies have leveraged large datasets from plot-inventory networks to report a phenomenon of hyperdominance in Amazonian tree communities, concluding that few species are common and many are rare. However, taxonomic hypotheses may not be consistent across these large plot networks, potentially masking cryptic diversity and threatened rare taxa. In the current study, we have reviewed one of the most abundant putatively hyperdominant taxa, Protium heptaphyllum (Aubl.) Marchand (Burseraceae), long considered to be a taxonomically difficult species complex. Using morphological, genomic, and functional data, we present evidence that P. heptaphyllum sensu lato may represent eight separately evolving lineages, each warranting species status. Most of these lineages are geographically restricted, and few if any of them could be considered hyperdominant on their own. In addition, functional trait data are consistent with the hypothesis that trees from each lineage are adapted to distinct soil and climate conditions. Moreover, some of the newly discovered species are rare, with habitats currently experiencing rapid deforestation. We highlight an urgent need to improve sampling and methods for species discovery in order to avoid oversimplified assumptions regarding diversity and rarity in the tropics and the implications for ecosystem functioning and conservation.