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Householder JE, Wittmann F, Schöngart J, Piedade MTF, Junk WJ, Latrubesse EM, Quaresma AC, Demarchi LO, de S Lobo G, Aguiar DPPD, Assis RL, Lopes A, Parolin P, Leão do Amaral I, Coelho LDS, de Almeida Matos FD, Lima Filho DDA, Salomão RP, Castilho CV, Guevara-Andino JE, Carim MDJV, Phillips OL, Cárdenas López D, Magnusson WE, Sabatier D, Revilla JDC, Molino JF, Irume MV, Martins MP, Guimarães JRDS, Ramos JF, Rodrigues DDJ, Bánki OS, Peres CA, Pitman NCA, Hawes JE, Almeida EJ, Barbosa LF, Cavalheiro L, Dos Santos MCV, Luize BG, Novo EMMDL, Núñez Vargas P, Silva TSF, Venticinque EM, Manzatto AG, Reis NFC, Terborgh J, Casula KR, Costa FRC, Honorio Coronado EN, Monteagudo Mendoza A, Montero JC, Feldpausch TR, Aymard C GA, Baraloto C, Castaño Arboleda N, Engel J, Petronelli P, Zartman CE, Killeen TJ, Rincón LM, Marimon BS, Marimon-Junior BH, Schietti J, Sousa TR, Vasquez R, Mostacedo B, Dantas do Amaral D, Castellanos H, Medeiros MBD, Simon MF, Andrade A, Camargo JL, Laurance WF, Laurance SGW, Farias EDS, Lopes MA, Magalhães JLL, Mendonça Nascimento HE, Queiroz HLD, Brienen R, Stevenson PR, Araujo-Murakami A, Baker TR, Cintra BBL, Feitosa YO, Mogollón HF, Noronha JC, Barbosa FR, de Sá Carpanedo R, Duivenvoorden JF, Silman MR, Ferreira LV, Levis C, Lozada JR, Comiskey JA, Draper FC, Toledo JJD, Damasco G, Dávila N, García-Villacorta R, Vicentini A, Cornejo Valverde F, Alonso A, Arroyo L, Dallmeier F, Gomes VHF, Jimenez EM, Neill D, Peñuela Mora MC, Carvalho FA, Coelho de Souza F, Feeley KJ, Gribel R, Pansonato MP, Ríos Paredes M, Barlow J, Berenguer E, Dexter KG, Ferreira J, Fine PVA, Guedes MC, Huamantupa-Chuquimaco I, Licona JC, Pennington T, Villa Zegarra BE, Vos VA, Cerón C, Fonty É, Henkel TW, Maas P, Pos E, Silveira M, Stropp J, Thomas R, Daly D, Milliken W, Pardo Molina G, Vieira ICG, Albuquerque BW, Campelo W, Emilio T, Fuentes A, Klitgaard B, Marcelo Pena JL, Souza PF, Tello JS, Vriesendorp C, Chave J, Di Fiore A, Hilário RR, Pereira LDO, Phillips JF, Rivas-Torres G, van Andel TR, von Hildebrand P, Balee W, Barbosa EM, Bonates LCDM, Doza HPD, Gómez RZ, Gonzales T, Gonzales GPG, Hoffman B, Junqueira AB, Malhi Y, Miranda IPDA, Mozombite-Pinto LF, Prieto A, Rudas A, Ruschel AR, Silva N, Vela CIA, Zent S, Zent EL, Cano A, Carrero Márquez YA, Correa DF, Costa JBP, Flores BM, Galbraith D, Holmgren M, Kalamandeen M, Nascimento MT, Oliveira AA, Ramirez-Angulo H, Rocha M, Scudeller VV, Sierra R, Tirado M, Umaña MN, van der Heijden G, Vilanova Torre E, Ahuite Reategui MA, Baider C, Balslev H, Cárdenas S, Casas LF, Farfan-Rios W, Ferreira C, Linares-Palomino R, Mendoza C, Mesones I, Parada GA, Torres-Lezama A, Urrego Giraldo LE, Villarroel D, Zagt R, Alexiades MN, de Oliveira EA, Garcia-Cabrera K, Hernandez L, Palacios Cuenca W, Pansini S, Pauletto D, Ramirez Arevalo F, Sampaio AF, Valderrama Sandoval EH, Valenzuela Gamarra L, Ter Steege H. One sixth of Amazonian tree diversity is dependent on river floodplains. Nat Ecol Evol 2024; 8:901-911. [PMID: 38467713 DOI: 10.1038/s41559-024-02364-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Accepted: 02/09/2024] [Indexed: 03/13/2024]
Abstract
Amazonia's floodplain system is the largest and most biodiverse on Earth. Although forests are crucial to the ecological integrity of floodplains, our understanding of their species composition and how this may differ from surrounding forest types is still far too limited, particularly as changing inundation regimes begin to reshape floodplain tree communities and the critical ecosystem functions they underpin. Here we address this gap by taking a spatially explicit look at Amazonia-wide patterns of tree-species turnover and ecological specialization of the region's floodplain forests. We show that the majority of Amazonian tree species can inhabit floodplains, and about a sixth of Amazonian tree diversity is ecologically specialized on floodplains. The degree of specialization in floodplain communities is driven by regional flood patterns, with the most compositionally differentiated floodplain forests located centrally within the fluvial network and contingent on the most extraordinary flood magnitudes regionally. Our results provide a spatially explicit view of ecological specialization of floodplain forest communities and expose the need for whole-basin hydrological integrity to protect the Amazon's tree diversity and its function.
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Affiliation(s)
- John Ethan Householder
- Wetland Department, Institute of Geography and Geoecology, Karlsruhe Institute of Technology, Rastatt, Germany.
| | - Florian Wittmann
- Wetland Department, Institute of Geography and Geoecology, Karlsruhe Institute of Technology, Rastatt, Germany.
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil.
| | - Jochen Schöngart
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | - Wolfgang J Junk
- National Institute for Science and Technology of Wetlands, Federal University of Mato Grosso, Cuiabá, Brazil
| | | | - Adriano Costa Quaresma
- Wetland Department, Institute of Geography and Geoecology, Karlsruhe Institute of Technology, Rastatt, Germany
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Layon O Demarchi
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Guilherme de S Lobo
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Daniel P P de Aguiar
- Procuradoria-Geral de Justiça, Ministério Público do Estado do Amazonas, Manaus, Brazil
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Rafael L Assis
- Biodiversity and Ecosystem Services, Instituto Tecnológico Vale, Belém, Brazil
| | - Aline Lopes
- Department of Ecology, Institute of Biological Sciences, University of Brasilia, Brasilia, Brazil
| | - Pia Parolin
- Biocentre Klein Flottbek and Botanical Gardens, University of Hamburg, Hamburg, Germany
| | - Iêda Leão do Amaral
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Luiz de Souza Coelho
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | | | - Rafael P Salomão
- Programa Professor Visitante Nacional Sênior na Amazônia-CAPES, Universidade Federal Rural da Amazônia, Belém, Brazil
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Belém, Brazil
| | - Carolina V Castilho
- Centro de Pesquisa Agroflorestal de Roraima, Embrapa Roraima, Boa Vista, Brazil
| | - Juan Ernesto Guevara-Andino
- Grupo de Investigación en Ecología y Evolución en los Trópicos, Universidad de las Américas, Quito, Ecuador
- Keller Science Action Center, the Field Museum, Chicago, IL, USA
| | | | | | | | - William E Magnusson
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Daniel Sabatier
- AMAP, IRD, Cirad, CNRS, INRAE, Université de Montpellier, Montpellier, France
| | | | | | - Mariana Victória Irume
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Maria Pires Martins
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | - José Ferreira Ramos
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | | | - Carlos A Peres
- School of Environmental Sciences, University of East Anglia, Norwich, UK
| | | | - Joseph E Hawes
- Institute of Science and Environment, University of Cumbria, Ambleside, UK
| | | | | | | | | | - Bruno Garcia Luize
- Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil
| | | | - Percy Núñez Vargas
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Cusco, Peru
| | | | | | | | - Neidiane Farias Costa Reis
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Porto Velho, Brazil
| | - John Terborgh
- Department of Biology and Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, Australia
| | - Katia Regina Casula
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Porto Velho, Brazil
| | - Flávia R C Costa
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Euridice N Honorio Coronado
- Instituto de Investigaciones de la Amazonía Peruana, Iquitos, Peru
- School of Geography and Sustainable Development, University of St Andrews, St Andrews, UK
| | - Abel Monteagudo Mendoza
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Cusco, Peru
- Jardín Botánico de Missouri, Oxapampa, Peru
| | - Juan Carlos Montero
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
- Instituto Boliviano de Investigacion Forestal, Santa Cruz, Bolivia
| | - Ted R Feldpausch
- School of Geography, University of Leeds, Leeds, UK
- Geography, College of Life and Environmental Sciences, University of Exeter, Exeter, UK
| | - Gerardo A Aymard C
- Programa de Ciencias del Agro y el Mar, Herbario Universitario (PORT), UNELLEZ-Guanare, Guanare, Venezuela
| | - Chris Baraloto
- International Center for Tropical Botany Department of Biological Sciences, Florida International University, Miami, FL, USA
| | | | - Julien Engel
- AMAP, IRD, Cirad, CNRS, INRAE, Université de Montpellier, Montpellier, France
- International Center for Tropical Botany Department of Biological Sciences, Florida International University, Miami, FL, USA
| | - Pascal Petronelli
- Cirad UMR Ecofog, AgrosParisTech, CNRS, INRAE, Université de Guyane, Kourou, France
| | - Charles Eugene Zartman
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | | | - Beatriz S Marimon
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil
| | - Ben Hur Marimon-Junior
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil
| | - Juliana Schietti
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Thaiane R Sousa
- Programa de Pós-Graduação em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | - Bonifacio Mostacedo
- Facultad de Ciencias Agrícolas, Universidad Autónoma Gabriel René Moreno, Santa Cruz, Bolivia
| | | | - Hernán Castellanos
- Centro de Investigaciones Ecológicas de Guayana, Universidad Nacional Experimental de Guayana, Bolivar, Venezuela
| | - Marcelo Brilhante de Medeiros
- Embrapa Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Prédio da Botânica e Ecologia, Brasilia, Brazil
| | - Marcelo Fragomeni Simon
- Embrapa Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Prédio da Botânica e Ecologia, Brasilia, Brazil
| | - Ana Andrade
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - José Luís Camargo
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - William F Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, Australia
| | - Susan G W Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, Australia
| | - Emanuelle de Sousa Farias
- Laboratório de Ecologia de Doenças Transmissíveis da Amazônia, Instituto Leônidas e Maria Deane, Fiocruz, Manaus, Brazil
- Programa de Pós-graduação em Biodiversidade e Saúde, Instituto Oswaldo Cruz, Rio de Janeiro, Brazil
| | | | - José Leonardo Lima Magalhães
- Programa de Pós-Graduação em Ecologia, Universidade Federal do Pará, Belém, Brazil
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amazônia Oriental, Belém, Brazil
| | | | - Helder Lima de Queiroz
- Diretoria Técnico-Científica, Instituto de Desenvolvimento Sustentável Mamirauá, Tefé, Brazil
| | - Roel Brienen
- School of Geography, University of Leeds, Leeds, UK
| | - Pablo R Stevenson
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
| | - Alejandro Araujo-Murakami
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Bolivia
| | - Tim R Baker
- School of Geography, University of Leeds, Leeds, UK
| | | | - Yuri Oliveira Feitosa
- Programa de Pós-Graduação em Biologia (Botânica), Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | | | | | | | - Joost F Duivenvoorden
- Institute of Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, the Netherlands
| | - Miles R Silman
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, Winston Salem, NC, USA
| | | | - Carolina Levis
- Graduate Program in Ecology, Federal University of Santa Catarina, Florianópolis, Brazil
| | - José Rafael Lozada
- Facultad de Ciencias Forestales y Ambientales, Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Mérida, Venezuela
| | - James A Comiskey
- Inventory and Monitoring Program, National Park Service, Fredericksburg, VA, USA
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, Washington, DC, USA
| | - Freddie C Draper
- Department of Geography and Planning, University of Liverpool, Liverpool, UK
| | | | - Gabriel Damasco
- Gothenburg Global Biodiversity Centre, University of Gothenburg, Gothenburg, Sweden
| | - Nállarett Dávila
- Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil
| | - Roosevelt García-Villacorta
- Programa Restauración de Ecosistemas, Centro de Innovación Científica Amazónica, Tambopata, Peru
- Peruvian Center for Biodiversity and Conservation, Iquitos, Peru
| | - Alberto Vicentini
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | - Alfonso Alonso
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, Washington, DC, USA
| | - Luzmila Arroyo
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Bolivia
| | - Francisco Dallmeier
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, Washington, DC, USA
| | - Vitor H F Gomes
- Escola de Negócios Tecnologia e Inovação, Centro Universitário do Pará, Belém, Brazil
- Environmental Science Program, Geosciences Department, Universidade Federal do Pará, Belém, Brazil
| | - Eliana M Jimenez
- Grupo de Ecología y Conservación de Fauna y Flora Silvestre, Instituto Amazónico de Investigaciones Imani, Universidad Nacional de Colombia sede Amazonia, Leticia, Colombia
| | - David Neill
- Universidad Estatal Amazónica, Puyo, Ecuador
| | | | - Fernanda Antunes Carvalho
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
- Instituto de Ciências Biológicas, Departamento de Genética, Ecologia e Evolução, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil
| | - Fernanda Coelho de Souza
- School of Geography, University of Leeds, Leeds, UK
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Kenneth J Feeley
- Department of Biology, University of Miami, Coral Gables, FL, USA
- Fairchild Tropical Botanic Garden, Coral Gables, FL, USA
| | - Rogerio Gribel
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Marcelo Petratti Pansonato
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
- Instituto de Biociências, Departamento de Ecologia, Universidade de Sao Paulo, São Paulo, Brazil
| | | | - Jos Barlow
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
| | - Erika Berenguer
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
- Environmental Change Institute, University of Oxford, Oxford, UK
| | - Kyle G Dexter
- School of Geosciences, University of Edinburgh, Edinburgh, UK
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, Edinburgh, UK
| | - Joice Ferreira
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amazônia Oriental, Belém, Brazil
| | - Paul V A Fine
- Department of Integrative Biology, University of California, Berkeley, Berkeley, CA, USA
| | | | | | | | - Toby Pennington
- Geography, College of Life and Environmental Sciences, University of Exeter, Exeter, UK
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, Edinburgh, UK
| | | | - Vincent Antoine Vos
- Instituto de Investigaciones Forestales de la Amazonía, Universidad Autónoma del Beni José Ballivián, Riberalta, Bolivia
| | - Carlos Cerón
- Escuela de Biología Herbario Alfredo Paredes, Universidad Central, Quito, Ecuador
| | - Émile Fonty
- AMAP, IRD, Cirad, CNRS, INRAE, Université de Montpellier, Montpellier, France
- Office national des forêts, Direction régionale de la Guyane, Cayenne, French Guiana
| | - Terry W Henkel
- Department of Biological Sciences, California State Polytechnic University, Arcata, CA, USA
| | - Paul Maas
- Naturalis Biodiversity Center, Leiden, the Netherlands
| | - Edwin Pos
- Quantitative Biodiversity Dynamics, Utrecht University, Utrecht, the Netherlands
- Utrecht University Botanic Gardens, Utrecht, the Netherlands
| | - Marcos Silveira
- Centro de Ciências Biológicas e da Natureza, Universidade Federal do Acre, Rio Branco, Brazil
| | - Juliana Stropp
- Biogeography Department, Trier University, Trier, Germany
| | - Raquel Thomas
- Iwokrama International Centre for Rain Forest Conservation and Development, Georgetown, Guyana
| | - Doug Daly
- New York Botanical Garden, Bronx, New York, NY, USA
| | - William Milliken
- Department for Ecosystem Stewardship, Royal Botanic Gardens, Kew, Richmond, UK
| | - Guido Pardo Molina
- Instituto de Investigaciones Forestales de la Amazonía, Universidad Autónoma del Beni José Ballivián, Riberalta, Bolivia
| | | | - Bianca Weiss Albuquerque
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Wegliane Campelo
- Ciências Ambientais, Universidade Federal do Amapá, Macapá, Brazil
| | - Thaise Emilio
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
- Department for Ecosystem Stewardship, Royal Botanic Gardens, Kew, Richmond, UK
| | - Alfredo Fuentes
- Herbario Nacional de Bolivia, Universitario UMSA, La Paz, Bolivia
- Center for Conservation and Sustainable Development, Missouri Botanical Garden, St. Louis, MO, USA
| | - Bente Klitgaard
- Department for Accelerated Taxonomy, Royal Botanic Gardens, Kew, Richmond, UK
| | | | - Priscila F Souza
- Programa de Pós-Graduação em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - J Sebastián Tello
- Center for Conservation and Sustainable Development, Missouri Botanical Garden, St. Louis, MO, USA
| | | | - Jerome Chave
- Laboratoire Evolution et Diversité Biologique, CNRS and Université Paul Sabatier, UMR 5174 EDB, Toulouse, France
| | - Anthony Di Fiore
- Department of Anthropology, University of Texas at Austin, Austin, TX, USA
- Estación de Biodiversidad Tiputini, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, Quito, Ecuador
| | | | | | | | - Gonzalo Rivas-Torres
- Estación de Biodiversidad Tiputini, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, Quito, Ecuador
- Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, FL, USA
| | - Tinde R van Andel
- Naturalis Biodiversity Center, Leiden, the Netherlands
- Biosystematics Group, Wageningen University, Wageningen, the Netherlands
| | | | - William Balee
- Department of Anthropology, Tulane University, New Orleans, LA, USA
| | | | | | | | | | | | | | | | - André Braga Junqueira
- Institut de Ciència i Tecnologia Ambientals, Universitat Autònoma de Barcelona, Barcelona, Spain
| | - Yadvinder Malhi
- Environmental Change Institute, Oxford University Centre for the Environment, Oxford, UK
| | | | | | - Adriana Prieto
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Bogotá, Colombia
| | - Agustín Rudas
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Bogotá, Colombia
| | - Ademir R Ruschel
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amazônia Oriental, Belém, Brazil
| | - Natalino Silva
- Instituto de Ciência Agrárias, Universidade Federal Rural da Amazônia, Belém, Brazil
| | - César I A Vela
- Escuela Profesional de Ingeniería Forestal, Universidad Nacional de San Antonio Abad del Cusco, Puerto Maldonado, Peru
| | - Stanford Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas, Caracas, Venezuela
| | - Egleé L Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas, Caracas, Venezuela
| | - Angela Cano
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
- Cambridge University Botanic Garden, Cambridge University, Cambridge, UK
| | | | - Diego F Correa
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
- Centre for Biodiversity and Conservation Science, University of Queensland, Brisbane, Queensland, Australia
| | | | | | | | - Milena Holmgren
- Resource Ecology Group, Wageningen University & Research, Wageningen, the Netherlands
| | - Michelle Kalamandeen
- School of Earth, Environment and Society, McMaster University, Hamilton, Ontario, Canada
| | - Marcelo Trindade Nascimento
- Laboratório de Ciências Ambientais, Universidade Estadual do Norte Fluminense, Campos dos Goytacazes, Brazil
| | - Alexandre A Oliveira
- Instituto de Biociências, Departamento de Ecologia, Universidade de Sao Paulo, São Paulo, Brazil
| | - Hirma Ramirez-Angulo
- Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Mérida, Venezuela
| | - Maira Rocha
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Veridiana Vizoni Scudeller
- Departamento de Biologia, Instituto de Ciências Biológicas, Universidade Federal do Amazonas, Manaus, Brazil
| | | | | | - Maria Natalia Umaña
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA
| | | | - Emilio Vilanova Torre
- Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Mérida, Venezuela
- Wildlife Conservation Society, New York, NY, USA
| | | | - Cláudia Baider
- Instituto de Biociências, Departamento de Ecologia, Universidade de Sao Paulo, São Paulo, Brazil
- Mauritius Herbarium, Agricultural Services, Ministry of Agro-Industry and Food Security, Moka, Mauritius
| | - Henrik Balslev
- Department of Biology, Aarhus University, Aarhus, Denmark
| | - Sasha Cárdenas
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
| | - Luisa Fernanda Casas
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
| | - William Farfan-Rios
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Cusco, Peru
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, Winston Salem, NC, USA
| | - Cid Ferreira
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Reynaldo Linares-Palomino
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, Washington, DC, USA
| | - Casimiro Mendoza
- Escuela de Ciencias Forestales, Universidad Mayor de San Simon, Cochabamba, Bolivia
- FOMABO, Manejo Forestal en las Tierras Tropicales de Bolivia, Cochabamba, Bolivia
| | - Italo Mesones
- Department of Integrative Biology, University of California, Berkeley, Berkeley, CA, USA
| | - Germaine Alexander Parada
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Bolivia
| | - Armando Torres-Lezama
- Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Mérida, Venezuela
| | | | - Daniel Villarroel
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Bolivia
- Fundación Amigos de la Naturaleza, Santa Cruz, Bolivia
| | | | - Miguel N Alexiades
- School of Anthropology and Conservation, University of Kent, Canterbury, UK
| | - Edmar Almeida de Oliveira
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil
| | - Karina Garcia-Cabrera
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, Winston Salem, NC, USA
| | - Lionel Hernandez
- Centro de Investigaciones Ecológicas de Guayana, Universidad Nacional Experimental de Guayana, Bolivar, Venezuela
| | | | - Susamar Pansini
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Porto Velho, Brazil
| | - Daniela Pauletto
- Instituto de Biodiversidade e Florestas, Universidade Federal do Oeste do Pará, Santarém, Brazil
| | | | - Adeilza Felipe Sampaio
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Porto Velho, Brazil
| | - Elvis H Valderrama Sandoval
- Facultad de Biologia, Universidad Nacional de la Amazonia Peruana, Iquitos, Peru
- Department of Biology, University of Missouri, St. Louis, MO, USA
| | | | - Hans Ter Steege
- Naturalis Biodiversity Center, Leiden, the Netherlands.
- Quantitative Biodiversity Dynamics, Utrecht University, Utrecht, the Netherlands.
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Householder JE, Wittmann F, Schöngart J, Piedade MTF, Junk WJ, Latrubesse EM, Quaresma AC, Demarchi LO, de S Lobo G, Aguiar DPPD, Assis RL, Lopes A, Parolin P, Leão do Amaral I, Coelho LDS, de Almeida Matos FD, Lima Filho DDA, Salomão RP, Castilho CV, Guevara-Andino JE, Carim MDJV, Phillips OL, Cárdenas López D, Magnusson WE, Sabatier D, Revilla JDC, Molino JF, Irume MV, Martins MP, Guimarães JRDS, Ramos JF, Rodrigues DDJ, Bánki OS, Peres CA, Pitman NCA, Hawes JE, Almeida EJ, Barbosa LF, Cavalheiro L, Dos Santos MCV, Luize BG, Novo EMMDL, Núñez Vargas P, Silva TSF, Venticinque EM, Manzatto AG, Reis NFC, Terborgh J, Casula KR, Costa FRC, Honorio Coronado EN, Monteagudo Mendoza A, Montero JC, Feldpausch TR, Aymard C GA, Baraloto C, Castaño Arboleda N, Engel J, Petronelli P, Zartman CE, Killeen TJ, Rincón LM, Marimon BS, Marimon-Junior BH, Schietti J, Sousa TR, Vasquez R, Mostacedo B, Dantas do Amaral D, Castellanos H, Medeiros MBD, Simon MF, Andrade A, Camargo JL, Laurance WF, Laurance SGW, Farias EDS, Lopes MA, Magalhães JLL, Mendonça Nascimento HE, Queiroz HLD, Brienen R, Stevenson PR, Araujo-Murakami A, Baker TR, Cintra BBL, Feitosa YO, Mogollón HF, Noronha JC, Barbosa FR, de Sá Carpanedo R, Duivenvoorden JF, Silman MR, Ferreira LV, Levis C, Lozada JR, Comiskey JA, Draper FC, Toledo JJD, Damasco G, Dávila N, García-Villacorta R, Vicentini A, Cornejo Valverde F, Alonso A, Arroyo L, Dallmeier F, Gomes VHF, Jimenez EM, Neill D, Peñuela Mora MC, Carvalho FA, Coelho de Souza F, Feeley KJ, Gribel R, Pansonato MP, Ríos Paredes M, Barlow J, Berenguer E, Dexter KG, Ferreira J, Fine PVA, Guedes MC, Huamantupa-Chuquimaco I, Licona JC, Pennington T, Villa Zegarra BE, Vos VA, Cerón C, Fonty É, Henkel TW, Maas P, Pos E, Silveira M, Stropp J, Thomas R, Daly D, Milliken W, Pardo Molina G, Vieira ICG, Albuquerque BW, Campelo W, Emilio T, Fuentes A, Klitgaard B, Marcelo Pena JL, Souza PF, Tello JS, Vriesendorp C, Chave J, Di Fiore A, Hilário RR, Pereira LDO, Phillips JF, Rivas-Torres G, van Andel TR, von Hildebrand P, Balee W, Barbosa EM, Bonates LCDM, Doza HPD, Gómez RZ, Gonzales T, Gonzales GPG, Hoffman B, Junqueira AB, Malhi Y, Miranda IPDA, Mozombite-Pinto LF, Prieto A, Rudas A, Ruschel AR, Silva N, Vela CIA, Zent S, Zent EL, Cano A, Carrero Márquez YA, Correa DF, Costa JBP, Flores BM, Galbraith D, Holmgren M, Kalamandeen M, Nascimento MT, Oliveira AA, Ramirez-Angulo H, Rocha M, Scudeller VV, Sierra R, Tirado M, Umaña MN, van der Heijden G, Vilanova Torre E, Ahuite Reategui MA, Baider C, Balslev H, Cárdenas S, Casas LF, Farfan-Rios W, Ferreira C, Linares-Palomino R, Mendoza C, Mesones I, Parada GA, Torres-Lezama A, Urrego Giraldo LE, Villarroel D, Zagt R, Alexiades MN, de Oliveira EA, Garcia-Cabrera K, Hernandez L, Palacios Cuenca W, Pansini S, Pauletto D, Ramirez Arevalo F, Sampaio AF, Valderrama Sandoval EH, Valenzuela Gamarra L, Ter Steege H. Author Correction: One sixth of Amazonian tree diversity is dependent on river floodplains. Nat Ecol Evol 2024; 8:1046-1047. [PMID: 38565681 DOI: 10.1038/s41559-024-02400-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Affiliation(s)
- John Ethan Householder
- Wetland Department, Institute of Geography and Geoecology, Karlsruhe Institute of Technology, Rastatt, Germany.
| | - Florian Wittmann
- Wetland Department, Institute of Geography and Geoecology, Karlsruhe Institute of Technology, Rastatt, Germany.
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil.
| | - Jochen Schöngart
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | - Wolfgang J Junk
- National Institute for Science and Technology of Wetlands, Federal University of Mato Grosso, Cuiabá, Brazil
| | | | - Adriano Costa Quaresma
- Wetland Department, Institute of Geography and Geoecology, Karlsruhe Institute of Technology, Rastatt, Germany
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Layon O Demarchi
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Guilherme de S Lobo
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Daniel P P de Aguiar
- Procuradoria-Geral de Justiça, Ministério Público do Estado do Amazonas, Manaus, Brazil
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Rafael L Assis
- Biodiversity and Ecosystem Services, Instituto Tecnológico Vale, Belém, Brazil
| | - Aline Lopes
- Department of Ecology, Institute of Biological Sciences, University of Brasilia, Brasilia, Brazil
| | - Pia Parolin
- Biocentre Klein Flottbek and Botanical Gardens, University of Hamburg, Hamburg, Germany
| | - Iêda Leão do Amaral
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Luiz de Souza Coelho
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | | | - Rafael P Salomão
- Programa Professor Visitante Nacional Sênior na Amazônia-CAPES, Universidade Federal Rural da Amazônia, Belém, Brazil
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Belém, Brazil
| | - Carolina V Castilho
- Centro de Pesquisa Agroflorestal de Roraima, Embrapa Roraima, Boa Vista, Brazil
| | - Juan Ernesto Guevara-Andino
- Grupo de Investigación en Ecología y Evolución en los Trópicos, Universidad de las Américas, Quito, Ecuador
- Keller Science Action Center, the Field Museum, Chicago, IL, USA
| | | | | | | | - William E Magnusson
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Daniel Sabatier
- AMAP, IRD, Cirad, CNRS, INRAE, Université de Montpellier, Montpellier, France
| | | | | | - Mariana Victória Irume
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Maria Pires Martins
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | - José Ferreira Ramos
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | | | - Carlos A Peres
- School of Environmental Sciences, University of East Anglia, Norwich, UK
| | | | - Joseph E Hawes
- Institute of Science and Environment, University of Cumbria, Ambleside, UK
| | | | | | | | | | - Bruno Garcia Luize
- Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil
| | | | - Percy Núñez Vargas
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Cusco, Peru
| | | | | | | | - Neidiane Farias Costa Reis
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Porto Velho, Brazil
| | - John Terborgh
- Department of Biology and Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, Australia
| | - Katia Regina Casula
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Porto Velho, Brazil
| | - Flávia R C Costa
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Euridice N Honorio Coronado
- Instituto de Investigaciones de la Amazonía Peruana, Iquitos, Peru
- School of Geography and Sustainable Development, University of St Andrews, St Andrews, UK
| | - Abel Monteagudo Mendoza
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Cusco, Peru
- Jardín Botánico de Missouri, Oxapampa, Peru
| | - Juan Carlos Montero
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
- Instituto Boliviano de Investigacion Forestal, Santa Cruz, Bolivia
| | - Ted R Feldpausch
- School of Geography, University of Leeds, Leeds, UK
- Geography, College of Life and Environmental Sciences, University of Exeter, Exeter, UK
| | - Gerardo A Aymard C
- Programa de Ciencias del Agro y el Mar, Herbario Universitario (PORT), UNELLEZ-Guanare, Guanare, Venezuela
| | - Chris Baraloto
- International Center for Tropical Botany Department of Biological Sciences, Florida International University, Miami, FL, USA
| | | | - Julien Engel
- AMAP, IRD, Cirad, CNRS, INRAE, Université de Montpellier, Montpellier, France
- International Center for Tropical Botany Department of Biological Sciences, Florida International University, Miami, FL, USA
| | - Pascal Petronelli
- Cirad UMR Ecofog, AgrosParisTech, CNRS, INRAE, Université de Guyane, Kourou, France
| | - Charles Eugene Zartman
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | | | - Beatriz S Marimon
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil
| | - Ben Hur Marimon-Junior
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil
| | - Juliana Schietti
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Thaiane R Sousa
- Programa de Pós-Graduação em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | - Bonifacio Mostacedo
- Facultad de Ciencias Agrícolas, Universidad Autónoma Gabriel René Moreno, Santa Cruz, Bolivia
| | | | - Hernán Castellanos
- Centro de Investigaciones Ecológicas de Guayana, Universidad Nacional Experimental de Guayana, Bolivar, Venezuela
| | - Marcelo Brilhante de Medeiros
- Embrapa Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Prédio da Botânica e Ecologia, Brasilia, Brazil
| | - Marcelo Fragomeni Simon
- Embrapa Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Prédio da Botânica e Ecologia, Brasilia, Brazil
| | - Ana Andrade
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - José Luís Camargo
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - William F Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, Australia
| | - Susan G W Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, Australia
| | - Emanuelle de Sousa Farias
- Laboratório de Ecologia de Doenças Transmissíveis da Amazônia, Instituto Leônidas e Maria Deane, Fiocruz, Manaus, Brazil
- Programa de Pós-graduação em Biodiversidade e Saúde, Instituto Oswaldo Cruz, Rio de Janeiro, Brazil
| | | | - José Leonardo Lima Magalhães
- Programa de Pós-Graduação em Ecologia, Universidade Federal do Pará, Belém, Brazil
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amazônia Oriental, Belém, Brazil
| | | | - Helder Lima de Queiroz
- Diretoria Técnico-Científica, Instituto de Desenvolvimento Sustentável Mamirauá, Tefé, Brazil
| | - Roel Brienen
- School of Geography, University of Leeds, Leeds, UK
| | - Pablo R Stevenson
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
| | - Alejandro Araujo-Murakami
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Bolivia
| | - Tim R Baker
- School of Geography, University of Leeds, Leeds, UK
| | | | - Yuri Oliveira Feitosa
- Programa de Pós-Graduação em Biologia (Botânica), Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | | | | | | | - Joost F Duivenvoorden
- Institute of Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, the Netherlands
| | - Miles R Silman
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, Winston Salem, NC, USA
| | | | - Carolina Levis
- Graduate Program in Ecology, Federal University of Santa Catarina, Florianópolis, Brazil
| | - José Rafael Lozada
- Facultad de Ciencias Forestales y Ambientales, Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Mérida, Venezuela
| | - James A Comiskey
- Inventory and Monitoring Program, National Park Service, Fredericksburg, VA, USA
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, Washington, DC, USA
| | - Freddie C Draper
- Department of Geography and Planning, University of Liverpool, Liverpool, UK
| | | | - Gabriel Damasco
- Gothenburg Global Biodiversity Centre, University of Gothenburg, Gothenburg, Sweden
| | - Nállarett Dávila
- Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil
| | - Roosevelt García-Villacorta
- Programa Restauración de Ecosistemas, Centro de Innovación Científica Amazónica, Tambopata, Peru
- Peruvian Center for Biodiversity and Conservation, Iquitos, Peru
| | - Alberto Vicentini
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | | | - Alfonso Alonso
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, Washington, DC, USA
| | - Luzmila Arroyo
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Bolivia
| | - Francisco Dallmeier
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, Washington, DC, USA
| | - Vitor H F Gomes
- Escola de Negócios Tecnologia e Inovação, Centro Universitário do Pará, Belém, Brazil
- Environmental Science Program, Geosciences Department, Universidade Federal do Pará, Belém, Brazil
| | - Eliana M Jimenez
- Grupo de Ecología y Conservación de Fauna y Flora Silvestre, Instituto Amazónico de Investigaciones Imani, Universidad Nacional de Colombia sede Amazonia, Leticia, Colombia
| | - David Neill
- Universidad Estatal Amazónica, Puyo, Ecuador
| | | | - Fernanda Antunes Carvalho
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
- Instituto de Ciências Biológicas, Departamento de Genética, Ecologia e Evolução, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil
| | - Fernanda Coelho de Souza
- School of Geography, University of Leeds, Leeds, UK
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Kenneth J Feeley
- Department of Biology, University of Miami, Coral Gables, FL, USA
- Fairchild Tropical Botanic Garden, Coral Gables, FL, USA
| | - Rogerio Gribel
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Marcelo Petratti Pansonato
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
- Instituto de Biociências, Departamento de Ecologia, Universidade de Sao Paulo, São Paulo, Brazil
| | | | - Jos Barlow
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
| | - Erika Berenguer
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
- Environmental Change Institute, University of Oxford, Oxford, UK
| | - Kyle G Dexter
- School of Geosciences, University of Edinburgh, Edinburgh, UK
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, Edinburgh, UK
| | - Joice Ferreira
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amazônia Oriental, Belém, Brazil
| | - Paul V A Fine
- Department of Integrative Biology, University of California, Berkeley, Berkeley, CA, USA
| | | | | | | | - Toby Pennington
- Geography, College of Life and Environmental Sciences, University of Exeter, Exeter, UK
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, Edinburgh, UK
| | | | - Vincent Antoine Vos
- Instituto de Investigaciones Forestales de la Amazonía, Universidad Autónoma del Beni José Ballivián, Riberalta, Bolivia
| | - Carlos Cerón
- Escuela de Biología Herbario Alfredo Paredes, Universidad Central, Quito, Ecuador
| | - Émile Fonty
- AMAP, IRD, Cirad, CNRS, INRAE, Université de Montpellier, Montpellier, France
- Office national des forêts, Direction régionale de la Guyane, Cayenne, French Guiana
| | - Terry W Henkel
- Department of Biological Sciences, California State Polytechnic University, Arcata, CA, USA
| | - Paul Maas
- Naturalis Biodiversity Center, Leiden, the Netherlands
| | - Edwin Pos
- Quantitative Biodiversity Dynamics, Utrecht University, Utrecht, the Netherlands
- Utrecht University Botanic Gardens, Utrecht, the Netherlands
| | - Marcos Silveira
- Centro de Ciências Biológicas e da Natureza, Universidade Federal do Acre, Rio Branco, Brazil
| | - Juliana Stropp
- Biogeography Department, Trier University, Trier, Germany
| | - Raquel Thomas
- Iwokrama International Centre for Rain Forest Conservation and Development, Georgetown, Guyana
| | - Doug Daly
- New York Botanical Garden, Bronx, New York, NY, USA
| | - William Milliken
- Department for Ecosystem Stewardship, Royal Botanic Gardens, Kew, Richmond, UK
| | - Guido Pardo Molina
- Instituto de Investigaciones Forestales de la Amazonía, Universidad Autónoma del Beni José Ballivián, Riberalta, Bolivia
| | | | - Bianca Weiss Albuquerque
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Wegliane Campelo
- Ciências Ambientais, Universidade Federal do Amapá, Macapá, Brazil
| | - Thaise Emilio
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
- Department for Ecosystem Stewardship, Royal Botanic Gardens, Kew, Richmond, UK
| | - Alfredo Fuentes
- Herbario Nacional de Bolivia, Universitario UMSA, La Paz, Bolivia
- Center for Conservation and Sustainable Development, Missouri Botanical Garden, St. Louis, MO, USA
| | - Bente Klitgaard
- Department for Accelerated Taxonomy, Royal Botanic Gardens, Kew, Richmond, UK
| | | | - Priscila F Souza
- Programa de Pós-Graduação em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - J Sebastián Tello
- Center for Conservation and Sustainable Development, Missouri Botanical Garden, St. Louis, MO, USA
| | | | - Jerome Chave
- Laboratoire Evolution et Diversité Biologique, CNRS and Université Paul Sabatier, UMR 5174 EDB, Toulouse, France
| | - Anthony Di Fiore
- Department of Anthropology, University of Texas at Austin, Austin, TX, USA
- Estación de Biodiversidad Tiputini, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, Quito, Ecuador
| | | | | | | | - Gonzalo Rivas-Torres
- Estación de Biodiversidad Tiputini, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, Quito, Ecuador
- Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, FL, USA
| | - Tinde R van Andel
- Naturalis Biodiversity Center, Leiden, the Netherlands
- Biosystematics Group, Wageningen University, Wageningen, the Netherlands
| | | | - William Balee
- Department of Anthropology, Tulane University, New Orleans, LA, USA
| | | | | | | | | | | | | | | | - André Braga Junqueira
- Institut de Ciència i Tecnologia Ambientals, Universitat Autònoma de Barcelona, Barcelona, Spain
| | - Yadvinder Malhi
- Environmental Change Institute, Oxford University Centre for the Environment, Oxford, UK
| | | | | | - Adriana Prieto
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Bogotá, Colombia
| | - Agustín Rudas
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Bogotá, Colombia
| | - Ademir R Ruschel
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amazônia Oriental, Belém, Brazil
| | - Natalino Silva
- Instituto de Ciência Agrárias, Universidade Federal Rural da Amazônia, Belém, Brazil
| | - César I A Vela
- Escuela Profesional de Ingeniería Forestal, Universidad Nacional de San Antonio Abad del Cusco, Puerto Maldonado, Peru
| | - Stanford Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas, Caracas, Venezuela
| | - Egleé L Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas, Caracas, Venezuela
| | - Angela Cano
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
- Cambridge University Botanic Garden, Cambridge University, Cambridge, UK
| | | | - Diego F Correa
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
- Centre for Biodiversity and Conservation Science, University of Queensland, Brisbane, Queensland, Australia
| | | | | | | | - Milena Holmgren
- Resource Ecology Group, Wageningen University & Research, Wageningen, the Netherlands
| | - Michelle Kalamandeen
- School of Earth, Environment and Society, McMaster University, Hamilton, Ontario, Canada
| | - Marcelo Trindade Nascimento
- Laboratório de Ciências Ambientais, Universidade Estadual do Norte Fluminense, Campos dos Goytacazes, Brazil
| | - Alexandre A Oliveira
- Instituto de Biociências, Departamento de Ecologia, Universidade de Sao Paulo, São Paulo, Brazil
| | - Hirma Ramirez-Angulo
- Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Mérida, Venezuela
| | - Maira Rocha
- Ecology, Monitoring and Sustainable Use of Wetlands, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Veridiana Vizoni Scudeller
- Departamento de Biologia, Instituto de Ciências Biológicas, Universidade Federal do Amazonas, Manaus, Brazil
| | | | | | - Maria Natalia Umaña
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA
| | | | - Emilio Vilanova Torre
- Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Mérida, Venezuela
- Wildlife Conservation Society, New York, NY, USA
| | | | - Cláudia Baider
- Instituto de Biociências, Departamento de Ecologia, Universidade de Sao Paulo, São Paulo, Brazil
- Mauritius Herbarium, Agricultural Services, Ministry of Agro-Industry and Food Security, Moka, Mauritius
| | - Henrik Balslev
- Department of Biology, Aarhus University, Aarhus, Denmark
| | - Sasha Cárdenas
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
| | - Luisa Fernanda Casas
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
| | - William Farfan-Rios
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Cusco, Peru
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, Winston Salem, NC, USA
| | - Cid Ferreira
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Reynaldo Linares-Palomino
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, Washington, DC, USA
| | - Casimiro Mendoza
- Escuela de Ciencias Forestales, Universidad Mayor de San Simon, Cochabamba, Bolivia
- FOMABO, Manejo Forestal en las Tierras Tropicales de Bolivia, Cochabamba, Bolivia
| | - Italo Mesones
- Department of Integrative Biology, University of California, Berkeley, Berkeley, CA, USA
| | - Germaine Alexander Parada
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Bolivia
| | - Armando Torres-Lezama
- Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Mérida, Venezuela
| | | | - Daniel Villarroel
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Bolivia
- Fundación Amigos de la Naturaleza, Santa Cruz, Bolivia
| | | | - Miguel N Alexiades
- School of Anthropology and Conservation, University of Kent, Canterbury, UK
| | - Edmar Almeida de Oliveira
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil
| | - Karina Garcia-Cabrera
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, Winston Salem, NC, USA
| | - Lionel Hernandez
- Centro de Investigaciones Ecológicas de Guayana, Universidad Nacional Experimental de Guayana, Bolivar, Venezuela
| | | | - Susamar Pansini
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Porto Velho, Brazil
| | - Daniela Pauletto
- Instituto de Biodiversidade e Florestas, Universidade Federal do Oeste do Pará, Santarém, Brazil
| | | | - Adeilza Felipe Sampaio
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Porto Velho, Brazil
| | - Elvis H Valderrama Sandoval
- Facultad de Biologia, Universidad Nacional de la Amazonia Peruana, Iquitos, Peru
- Department of Biology, University of Missouri, St. Louis, MO, USA
| | | | - Hans Ter Steege
- Naturalis Biodiversity Center, Leiden, the Netherlands.
- Quantitative Biodiversity Dynamics, Utrecht University, Utrecht, the Netherlands.
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Cooper DLM, Lewis SL, Sullivan MJP, Prado PI, Ter Steege H, Barbier N, Slik F, Sonké B, Ewango CEN, Adu-Bredu S, Affum-Baffoe K, de Aguiar DPP, Ahuite Reategui MA, Aiba SI, Albuquerque BW, de Almeida Matos FD, Alonso A, Amani CA, do Amaral DD, do Amaral IL, Andrade A, de Andrade Miranda IP, Angoboy IB, Araujo-Murakami A, Arboleda NC, Arroyo L, Ashton P, Aymard C GA, Baider C, Baker TR, Balinga MPB, Balslev H, Banin LF, Bánki OS, Baraloto C, Barbosa EM, Barbosa FR, Barlow J, Bastin JF, Beeckman H, Begne S, Bengone NN, Berenguer E, Berry N, Bitariho R, Boeckx P, Bogaert J, Bonyoma B, Boundja P, Bourland N, Boyemba Bosela F, Brambach F, Brienen R, Burslem DFRP, Camargo JL, Campelo W, Cano A, Cárdenas S, Cárdenas López D, de Sá Carpanedo R, Carrero Márquez YA, Carvalho FA, Casas LF, Castellanos H, Castilho CV, Cerón C, Chapman CA, Chave J, Chhang P, Chutipong W, Chuyong GB, Cintra BBL, Clark CJ, Coelho de Souza F, Comiskey JA, Coomes DA, Cornejo Valverde F, Correa DF, Costa FRC, Costa JBP, Couteron P, Culmsee H, Cuni-Sanchez A, Dallmeier F, Damasco G, Dauby G, Dávila N, Dávila Doza HP, De Alban JDT, de Assis RL, De Canniere C, De Haulleville T, de Jesus Veiga Carim M, Demarchi LO, Dexter KG, Di Fiore A, Din HHM, Disney MI, Djiofack BY, Djuikouo MNK, Do TV, Doucet JL, Draper FC, Droissart V, Duivenvoorden JF, Engel J, Estienne V, Farfan-Rios W, Fauset S, Feeley KJ, Feitosa YO, Feldpausch TR, Ferreira C, Ferreira J, Ferreira LV, Fletcher CD, Flores BM, Fofanah A, Foli EG, Fonty É, Fredriksson GM, Fuentes A, Galbraith D, Gallardo Gonzales GP, Garcia-Cabrera K, García-Villacorta R, Gomes VHF, Gómez RZ, Gonzales T, Gribel R, Guedes MC, Guevara JE, Hakeem KR, Hall JS, Hamer KC, Hamilton AC, Harris DJ, Harrison RD, Hart TB, Hector A, Henkel TW, Herbohn J, Hockemba MBN, Hoffman B, Holmgren M, Honorio Coronado EN, Huamantupa-Chuquimaco I, Hubau W, Imai N, Irume MV, Jansen PA, Jeffery KJ, Jimenez EM, Jucker T, Junqueira AB, Kalamandeen M, Kamdem NG, Kartawinata K, Kasongo Yakusu E, Katembo JM, Kearsley E, Kenfack D, Kessler M, Khaing TT, Killeen TJ, Kitayama K, Klitgaard B, Labrière N, Laumonier Y, Laurance SGW, Laurance WF, Laurent F, Le TC, Le TT, Leal ME, Leão de Moraes Novo EM, Levesley A, Libalah MB, Licona JC, Lima Filho DDA, Lindsell JA, Lopes A, Lopes MA, Lovett JC, Lowe R, Lozada JR, Lu X, Luambua NK, Luize BG, Maas P, Magalhães JLL, Magnusson WE, Mahayani NPD, Makana JR, Malhi Y, Maniguaje Rincón L, Mansor A, Manzatto AG, Marimon BS, Marimon-Junior BH, Marshall AR, Martins MP, Mbayu FM, de Medeiros MB, Mesones I, Metali F, Mihindou V, Millet J, Milliken W, Mogollón HF, Molino JF, Mohd Said MN, Monteagudo Mendoza A, Montero JC, Moore S, Mostacedo B, Mozombite Pinto LF, Mukul SA, Munishi PKT, Nagamasu H, Nascimento HEM, Nascimento MT, Neill D, Nilus R, Noronha JC, Nsenga L, Núñez Vargas P, Ojo L, Oliveira AA, de Oliveira EA, Ondo FE, Palacios Cuenca W, Pansini S, Pansonato MP, Paredes MR, Paudel E, Pauletto D, Pearson RG, Pena JLM, Pennington RT, Peres CA, Permana A, Petronelli P, Peñuela Mora MC, Phillips JF, Phillips OL, Pickavance G, Piedade MTF, Pitman NCA, Ploton P, Popelier A, Poulsen JR, Prieto A, Primack RB, Priyadi H, Qie L, Quaresma AC, de Queiroz HL, Ramirez-Angulo H, Ramos JF, Reis NFC, Reitsma J, Revilla JDC, Riutta T, Rivas-Torres G, Robiansyah I, Rocha M, Rodrigues DDJ, Rodriguez-Ronderos ME, Rovero F, Rozak AH, Rudas A, Rutishauser E, Sabatier D, Sagang LB, Sampaio AF, Samsoedin I, Satdichanh M, Schietti J, Schöngart J, Scudeller VV, Seuaturien N, Sheil D, Sierra R, Silman MR, Silva TSF, da Silva Guimarães JR, Simo-Droissart M, Simon MF, Sist P, Sousa TR, de Sousa Farias E, de Souza Coelho L, Spracklen DV, Stas SM, Steinmetz R, Stevenson PR, Stropp J, Sukri RS, Sunderland TCH, Suzuki E, Swaine MD, Tang J, Taplin J, Taylor DM, Tello JS, Terborgh J, Texier N, Theilade I, Thomas DW, Thomas R, Thomas SC, Tirado M, Toirambe B, de Toledo JJ, Tomlinson KW, Torres-Lezama A, Tran HD, Tshibamba Mukendi J, Tumaneng RD, Umaña MN, Umunay PM, Urrego Giraldo LE, Valderrama Sandoval EH, Valenzuela Gamarra L, Van Andel TR, van de Bult M, van de Pol J, van der Heijden G, Vasquez R, Vela CIA, Venticinque EM, Verbeeck H, Veridiano RKA, Vicentini A, Vieira ICG, Vilanova Torre E, Villarroel D, Villa Zegarra BE, Vleminckx J, von Hildebrand P, Vos VA, Vriesendorp C, Webb EL, White LJT, Wich S, Wittmann F, Zagt R, Zang R, Zartman CE, Zemagho L, Zent EL, Zent S. Consistent patterns of common species across tropical tree communities. Nature 2024; 625:728-734. [PMID: 38200314 PMCID: PMC10808064 DOI: 10.1038/s41586-023-06820-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2022] [Accepted: 11/01/2023] [Indexed: 01/12/2024]
Abstract
Trees structure the Earth's most biodiverse ecosystem, tropical forests. The vast number of tree species presents a formidable challenge to understanding these forests, including their response to environmental change, as very little is known about most tropical tree species. A focus on the common species may circumvent this challenge. Here we investigate abundance patterns of common tree species using inventory data on 1,003,805 trees with trunk diameters of at least 10 cm across 1,568 locations1-6 in closed-canopy, structurally intact old-growth tropical forests in Africa, Amazonia and Southeast Asia. We estimate that 2.2%, 2.2% and 2.3% of species comprise 50% of the tropical trees in these regions, respectively. Extrapolating across all closed-canopy tropical forests, we estimate that just 1,053 species comprise half of Earth's 800 billion tropical trees with trunk diameters of at least 10 cm. Despite differing biogeographic, climatic and anthropogenic histories7, we find notably consistent patterns of common species and species abundance distributions across the continents. This suggests that fundamental mechanisms of tree community assembly may apply to all tropical forests. Resampling analyses show that the most common species are likely to belong to a manageable list of known species, enabling targeted efforts to understand their ecology. Although they do not detract from the importance of rare species, our results open new opportunities to understand the world's most diverse forests, including modelling their response to environmental change, by focusing on the common species that constitute the majority of their trees.
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Affiliation(s)
- Declan L M Cooper
- Department of Geography, University College London, London, UK.
- Centre for Biodiversity and Environment Research, Department of Genetics, Evolution and Environment, University College London, London, UK.
| | - Simon L Lewis
- Department of Geography, University College London, London, UK.
- School of Geography, University of Leeds, Leeds, UK.
| | - Martin J P Sullivan
- School of Geography, University of Leeds, Leeds, UK
- Department of Natural Sciences, Manchester Metropolitan University, Manchester, UK
| | - Paulo I Prado
- Instituto de Biociências, Departamento de Ecologia, Universidade de Sao Paulo (USP), São Paulo, Brazil
| | - Hans Ter Steege
- Naturalis Biodiversity Center, Leiden, The Netherlands
- Quantitative Biodiversity Dynamics, Department of Biology, Utrecht University, Utrecht, The Netherlands
| | - Nicolas Barbier
- AMAP, Université de Montpellier, IRD, Cirad, CNRS, INRAE, Montpellier, France
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
| | - Ferry Slik
- Environmental and Life Sciences, Faculty of Science, Universiti Brunei Darussalam, Gadong, Brunei Darussalam
| | - Bonaventure Sonké
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
- Plant Systematics and Ecology Laboratory, Higher Teachers' Training College, University of Yaoundé I, Yaoundé, Cameroon
| | - Corneille E N Ewango
- Faculty of Renewable Natural Resources Management and Faculty of Sciences, University of Kisangani, Kisangani, Democratic Republic of the Congo
| | | | | | - Daniel P P de Aguiar
- Procuradoria-Geral de Justiça, Ministério Público do Estado do Amazonas, Manaus, Brazil
- Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | - Shin-Ichiro Aiba
- Faculty of Environmental Earth Science, Hokkaido University, Sapporo, Japan
| | - Bianca Weiss Albuquerque
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | - Alfonso Alonso
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, Washington, DC, USA
| | - Christian A Amani
- Center for International Forestry Research (CIFOR), Bogor, Indonesia
- Université Officielle de Bukavu, Bukavu, Democratic Republic of the Congo
| | | | - Iêda Leão do Amaral
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Ana Andrade
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | - Ilondea B Angoboy
- Institut National pour l'Etude et la Recherche Agronomiques, Bukavu, Democratic Republic of the Congo
| | - Alejandro Araujo-Murakami
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Santa Cruz, Bolivia
| | | | - Luzmila Arroyo
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Santa Cruz, Bolivia
| | - Peter Ashton
- Bullard Emeritus Professor of Forestry, Harvard University, Cambridge, MA, USA
| | - Gerardo A Aymard C
- Programa de Ciencias del Agro y el Mar, Herbario Universitario (PORT), UNELLEZ-Guanare, Guanare, Venezuela
| | - Cláudia Baider
- The Mauritius Herbarium, Agricultural Services, Ministry of Agro-Industry and Food Security, Reduit, Mauritius
- Instituto de Biociências, Departamento de Ecologia, Universidade de São Paulo (USP), São Paulo, Brazil
| | | | | | - Henrik Balslev
- Department of Biology, Aarhus University, Aarhus C, Aarhus, Denmark
| | | | - Olaf S Bánki
- Naturalis Biodiversity Center, Leiden, The Netherlands
| | - Chris Baraloto
- International Center for Tropical Botany, Department of Biological Sciences, Florida International University, Miami, FL, USA
| | | | | | - Jos Barlow
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
| | - Jean-Francois Bastin
- TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, University of Liege, Gembloux, Belgium
| | - Hans Beeckman
- Service of Wood Biology, Royal Museum for Central Africa, Tervuren, Belgium
| | - Serge Begne
- School of Geography, University of Leeds, Leeds, UK
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
- Plant Systematics and Ecology Laboratory, Higher Teachers' Training College, University of Yaoundé I, Yaoundé, Cameroon
| | | | - Erika Berenguer
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
- Environmental Change Institute, School of Geography and the Environment, University of Oxford, Oxford, UK
| | | | - Robert Bitariho
- Institute of Tropical Forest Conservation, Mbarara University of Science and Technology (MUST), Mbarara, Uganda
| | - Pascal Boeckx
- Isotope Bioscience Laboratory (ISOFYS), Ghent University, Ghent, Belgium
| | - Jan Bogaert
- Biodiversity and Landscape Unit, Gembloux Agro-Bio Tech, Université de Liege, Liège, Belgium
| | - Bernard Bonyoma
- Section de la Foresterie, Institut National pour l'Etude et la Recherche Agronomique Yangambi, Yangambi, Democratic Republic of the Congo
| | - Patrick Boundja
- Center for International Forestry Research (CIFOR), Bogor, Indonesia
- Congo Programme, Wildlife Conservation Society, Brazzaville, Republic of Congo
| | - Nils Bourland
- Service of Wood Biology, Royal Museum for Central Africa, Tervuren, Belgium
- CIFOR, Bogor, Indonesia
- Forest Resources Management, Gembloux Agro-Bio Tech, University of Liège, Liège, Belgium
- Resources and Synergies Development, Singapore, Singapore
| | - Faustin Boyemba Bosela
- Laboratory of Ecology and Forest Management, Faculty of Sciences, University of Kisangani, Kisangani, Democratic Republic of the Congo
| | - Fabian Brambach
- Biodiversity, Macroecology and Biogeography, University of Göttingen, Göttingen, Germany
| | - Roel Brienen
- School of Geography, University of Leeds, Leeds, UK
| | | | - José Luís Camargo
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Wegliane Campelo
- Universidade Federal do Amapá, Ciências Ambientais, Macapá, Brazil
| | - Angela Cano
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
- Cambridge University Botanic Garden, Cambridge, UK
| | - Sasha Cárdenas
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
| | | | | | | | - Fernanda Antunes Carvalho
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
- Departamento de Genética, Ecologia e Evolução, Instituto de Ciências Biológicas, Belo Horizonte, Brazil
| | - Luisa Fernanda Casas
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
| | - Hernán Castellanos
- Centro de Investigaciones Ecológicas de Guayana, Universidad Nacional Experimental de Guayana, Puerto Ordaz, Venezuela
| | - Carolina V Castilho
- Centro de Pesquisa Agroflorestal de Roraima, Embrapa Roraima, Boa Vista, Brazil
| | - Carlos Cerón
- Escuela de Biología Herbario Alfredo Paredes, Universidad Central, Quito, Ecuador
| | - Colin A Chapman
- Biology Department, Vancouver Island University, Nanaimo, British Columbia, Canada
- Shaanxi Key Laboratory for Animal Conservation, Northwest University, Xi'an, China
- School of Life Sciences, University of KwaZulu-Natal, Scottsville, South Africa
| | - Jerome Chave
- Laboratoire Évolution et Diversité Biologique, CNRS and Université Paul Sabatier, Toulouse, France
| | - Phourin Chhang
- Institute of Forest and Wildlife Research and Development (IRD), Phnom Penh, Cambodia
| | - Wanlop Chutipong
- Conservation Ecology Program, King Mongkut's University of Technology Thonburi, Bangkok, Thailand
| | - George B Chuyong
- Faculty of Science, Department of Plant Science, University of Buea, Buea, Cameroon
| | | | - Connie J Clark
- Nicholas School of the Environment, Duke University, Durham, NC, USA
| | - Fernanda Coelho de Souza
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
- University of Leeds, Leeds, UK
- BeZero, London, UK
| | - James A Comiskey
- Inventory and Monitoring Program, National Park Service, Fredericksburg, VA, USA
- Smithsonian Conservation Biology Institute, Washington, DC, USA
| | - David A Coomes
- Department of Plant Sciences and Conservation Research Institute, University of Cambridge, Cambridge, UK
| | | | - Diego F Correa
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
- The University of Queensland, Brisbane, Queensland, Australia
| | - Flávia R C Costa
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | - Pierre Couteron
- AMAP, Université de Montpellier, IRD, Cirad, CNRS, INRAE, Montpellier, France
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
| | - Heike Culmsee
- State Agency for Environment, Nature Conservation and Geology, Güstrow, Germany
| | - Aida Cuni-Sanchez
- Department of Environment and Geography, University of York, York, UK
- Department of International Environmental and Development Studies (NORAGRIC), Norwegian University of Life Sciences, Ås, Norway
| | - Francisco Dallmeier
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, Washington, DC, USA
| | - Gabriel Damasco
- Gothenburg Global Biodiversity Centre, University of Gothenburg, Gothenburg, Sweden
| | - Gilles Dauby
- AMAP, Université de Montpellier, IRD, Cirad, CNRS, INRAE, Montpellier, France
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
| | - Nállarett Dávila
- Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas, Brazil
| | | | - Jose Don T De Alban
- Centre for Nature-Based Climate Solutions, Department of Biological Sciences, National University of Singapore, Singapore, Singapore
- Phillipines Programme, Fauna and Flora International, Cambridge, UK
| | - Rafael L de Assis
- Biodiversity and Ecosystem Services, Instituto Tecnológico Vale, Belém, Brazil
| | - Charles De Canniere
- Landscape Ecology and Vegetal Production Systems Unit, Universite Libre de Bruxelles, Brussels, Belgium
| | | | | | - Layon O Demarchi
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Kyle G Dexter
- School of Geosciences, University of Edinburgh, Edinburgh, UK
- Royal Botanic Garden Edinburgh, Edinburgh, UK
| | - Anthony Di Fiore
- Department of Anthropology, University of Texas at Austin, Austin, TX, USA
- Estación de Biodiversidad Tiputini, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito (USFQ), Quito, Ecuador
| | - Hazimah Haji Mohammad Din
- Institute for Biodiversity and Environmental Research, Universiti Brunei Darussalam, Bandar Seri Begawan, Brunei Darussalam
| | | | - Brice Yannick Djiofack
- Service of Wood Biology, Royal Museum for Central Africa, Tervuren, Belgium
- Institut National pour l'Etude et la Recherche Agronomiques (INERA), Wood Laboratory of Yangambi, Yangambi, Democratic Republic of the Congo
- UGent-Woodlab, Laboratory of Wood Technology, Department of Environment, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Marie-Noël K Djuikouo
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
- Faculty of Science, Department of Plant Science, University of Buea, Buea, Cameroon
| | - Tran Van Do
- Silviculture Research Institute, Vietnamese Academy of Forest Sciences, Hanoi, Vietnam
| | - Jean-Louis Doucet
- Forest Is Life, TERRA, Gembloux Agro-Bio Tech, Liège University, Liège, Belgium
| | - Freddie C Draper
- Department of Geography and Planning, University of Liverpool, Liverpool, UK
| | - Vincent Droissart
- AMAP, Université de Montpellier, IRD, Cirad, CNRS, INRAE, Montpellier, France
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
| | - Joost F Duivenvoorden
- Institute of Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Julien Engel
- AMAP, Université de Montpellier, IRD, Cirad, CNRS, INRAE, Montpellier, France
- Florida International University, Miami, FL, USA
| | - Vittoria Estienne
- Congo Programme, Wildlife Conservation Society, Brazzaville, Republic of Congo
| | - William Farfan-Rios
- Living Earth Collaborative, Washington University in Saint Louis, St Louis, MO, USA
- Missouri Botanical Garden, St Louis, MO, USA
| | - Sophie Fauset
- School of Geography, Earth and Environmental Sciences, University of Plymouth, Plymouth, UK
| | - Kenneth J Feeley
- Department of Biology, University of Miami, Coral Gables, FL, USA
- Fairchild Tropical Botanic Garden, Coral Gables, FL, USA
| | - Yuri Oliveira Feitosa
- Programa de Pós-Graduação em Biologia (Botânica), Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Ted R Feldpausch
- University of Leeds, Leeds, UK
- Department of Geography, College of Life and Environmental Sciences, University of Exeter, Exeter, UK
| | - Cid Ferreira
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Joice Ferreira
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amazônia Oriental, Belém, Brazil
| | | | | | | | | | - Ernest G Foli
- Forestry Research Institute of Ghana (FORIG), Kumasi, Ghana
| | - Émile Fonty
- Direction Régionale de la Guyane, Office National des Forêts, Cayenne, French Guiana
- Université de Montpellier, Montpellier, France
| | | | - Alfredo Fuentes
- Missouri Botanical Garden, St Louis, MO, USA
- Herbario Nacional de Bolivia, Instituto de Ecología, Carrera de Biología, Universidad Mayor de San Andrés, La Paz, Bolivia
| | | | | | - Karina Garcia-Cabrera
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, Winston Salem, NC, USA
| | - Roosevelt García-Villacorta
- Programa Restauración de Ecosistemas (PRE), Centro de Innovación Científica Amazónica (CINCIA), Tambopata, Peru
- Peruvian Center for Biodiversity and Conservation (PCBC), Iquitos, Peru
| | - Vitor H F Gomes
- Escola de Negócios Tecnologia e Inovação, Centro Universitário do Pará, Belém, Brazil
- Universidade Federal do Pará, Belém, Brazil
| | - Ricardo Zárate Gómez
- PROTERRA, Instituto de Investigaciones de la Amazonía Peruana (IIAP), Iquitos, Peru
| | | | - Rogerio Gribel
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | - Juan Ernesto Guevara
- Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud-BIOMAS, Universidad de las Américas, Quito, Ecuador
- The Field Museum, Chicago, IL, USA
| | - Khalid Rehman Hakeem
- Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Jefferson S Hall
- Forest Global Earth Observatory (ForestGEO), Smithsonian Tropical Research Institute, Washington, DC, USA
| | | | - Alan C Hamilton
- Honorary Professor, Kunming Institute of Botany, Chinese Academy of Science, Kunming, China
| | | | | | - Terese B Hart
- Lukuru Wildlife Research Foundation, Kinshasa, Democratic Republic of the Congo
- Division of Vertebrate Zoology, Yale Peabody Museum of Natural History, New Haven, CT, USA
| | - Andy Hector
- Department of Plant Sciences, University of Oxford, Oxford, UK
| | - Terry W Henkel
- Department of Biological Sciences, California State Polytechnic University, Humboldt, Arcata, CA, USA
| | - John Herbohn
- Tropical Forests and People Research Centre, University of the Sunshine Coast, Maroochydore DC, Queensland, Australia
| | | | | | - Milena Holmgren
- Resource Ecology Group, Wageningen University and Research, Wageningen, The Netherlands
| | - Euridice N Honorio Coronado
- Instituto de Investigaciones de la Amazonía Peruana (IIAP), Iquitos, Peru
- University of St Andrews, St Andrews, UK
| | | | - Wannes Hubau
- School of Geography, University of Leeds, Leeds, UK
- Service of Wood Biology, Royal Museum for Central Africa, Tervuren, Belgium
- Department of Environment, Laboratory of Wood Technology (Woodlab), Ghent University, Ghent, Belgium
| | - Nobuo Imai
- Department of Forest Science, Tokyo University of Agriculture, Tokyo, Japan
| | - Mariana Victória Irume
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Patrick A Jansen
- Smithsonian Tropical Research Institute, Ancon, Panama
- Department of Environmental Sciences, Wageningen University and Research, Wageningen, The Netherlands
| | - Kathryn J Jeffery
- Department of Biological and Environmental Sciences, University of Stirling, Stirling, UK
| | - Eliana M Jimenez
- Grupo de Ecología y Conservación de Fauna y Flora Silvestre, Instituto Amazónico de Investigaciones Imani, Universidad Nacional de Colombia sede Amazonia, Leticia, Colombia
| | - Tommaso Jucker
- School of Biological Sciences, University of Bristol, Bristol, UK
| | - André Braga Junqueira
- Institut de Ciència i Tecnologia Ambientals, Universitat Autònoma de Barcelona, Barcelona, Spain
| | - Michelle Kalamandeen
- School of Earth, Environment and Society, McMaster University, Hamilton, Ontario, Canada
| | - Narcisse G Kamdem
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
- Plant Systematics and Ecology Laboratory, Higher Teachers' Training College, University of Yaoundé I, Yaoundé, Cameroon
| | - Kuswata Kartawinata
- Integrative Research Center, The Field Museum of Natural History, Chicago, IL, USA
| | - Emmanuel Kasongo Yakusu
- Service of Wood Biology, Royal Museum for Central Africa, Tervuren, Belgium
- UGent-Woodlab, Laboratory of Wood Technology, Department of Environment, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
- Faculté de Gestion de Ressources Naturelles Renouvelables, Université de Kisangani, Kisangani, Democratic Republic of the Congo
| | - John M Katembo
- Laboratory of Ecology and Forest Management, Faculty of Sciences, University of Kisangani, Kisangani, Democratic Republic of the Congo
| | - Elizabeth Kearsley
- Computational and Applied Vegetation Ecology (CAVElab), Department of Environment, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - David Kenfack
- Forest Global Earth Observatory (ForestGEO), Smithsonian Tropical Research Institute, Washington, DC, USA
| | - Michael Kessler
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
| | - Thiri Toe Khaing
- Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, China
- University of the Chinese Academy of Sciences, Beijing, China
| | | | | | - Bente Klitgaard
- Department for Accelerated Taxonomy, Royal Botanic Gardens, Richmond, UK
| | - Nicolas Labrière
- Laboratoire Évolution et Diversité Biologique, CNRS and Université Paul Sabatier, Toulouse, France
| | - Yves Laumonier
- Forest and Environment Program, Center for International Forestry Research (CIFOR), Bogor, Indonesia
| | - Susan G W Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, Australia
| | - William F Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, Australia
| | - Félix Laurent
- Service of Wood Biology, Royal Museum for Central Africa, Tervuren, Belgium
- Institut National pour l'Etude et la Recherche Agronomiques (INERA), Wood Laboratory of Yangambi, Yangambi, Democratic Republic of the Congo
- UGent-Woodlab, Laboratory of Wood Technology, Department of Environment, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Tinh Cong Le
- Viet Nature Conservation Centre, Hanoi, Viet Nam
| | | | - Miguel E Leal
- Uganda Programme, Wildlife Conservation Society, Kampala, Uganda
| | | | | | - Moses B Libalah
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
- Plant Systematics and Ecology Laboratory, Higher Teachers' Training College, University of Yaoundé I, Yaoundé, Cameroon
- Department of Plant Biology, Faculty of Science, University of Yaoundé I, Yaoundé, Cameroon
| | - Juan Carlos Licona
- Instituto Boliviano de Investigacion Forestal, Santa Cruz, Santa Cruz, Bolivia
| | | | | | - Aline Lopes
- Department of Ecology, Institute of Biological Sciences, University of Brasilia, Brasilia, Brazil
| | | | - Jon C Lovett
- School of Geography, University of Leeds, Leeds, UK
- Herbarium, Royal Botanic Gardens Kew, Richmond, UK
| | - Richard Lowe
- Botany Department, University of Ibadan, Ibadan, Nigeria
| | - José Rafael Lozada
- Facultad de Ciencias Forestales y Ambientales, Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Mérida, Mérida, Venezuela
| | - Xinghui Lu
- Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing, China
| | - Nestor K Luambua
- Service of Wood Biology, Royal Museum for Central Africa, Tervuren, Belgium
- Institut National pour l'Etude et la Recherche Agronomiques (INERA), Wood Laboratory of Yangambi, Yangambi, Democratic Republic of the Congo
- Faculty of Renewable Natural Resources Management, University of Kisangani, Kisangani, Democratic Republic of the Congo
- Faculté des sciences Agronomiques, Université Officielle de Mbujimayi, Mbujimayi, Democratic Republic of the Congo
| | - Bruno Garcia Luize
- Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas, Brazil
| | - Paul Maas
- Naturalis Biodiversity Center, Leiden, The Netherlands
| | - José Leonardo Lima Magalhães
- Programa de Pós-Graduação em Ecologia, Universidade Federal do Pará, Belém, Brazil
- Embrapa Amazônia Oriental, Belém, Brazil
| | - William E Magnusson
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | - Jean-Remy Makana
- Faculté des Sciences, Laboratoire d'Écologie et Aménagement Forestier, Université de Kisangani, Kisangani, Democratic Republic of the Congo
| | - Yadvinder Malhi
- Environmental Change Institute, School of Geography and the Environment, University of Oxford, Oxford, UK
| | - Lorena Maniguaje Rincón
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Asyraf Mansor
- School of Biological Sciences, Universiti Sains Malaysia, George Town, Malaysia
- Centre for Marine and Coastal Studies, Universiti Sains Malaysia, George Town, Malaysia
| | | | - Beatriz S Marimon
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil
| | - Ben Hur Marimon-Junior
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil
| | - Andrew R Marshall
- Department of Environment and Geography, University of York, York, UK
- Flamingo Land, Kirby Misperton, UK
- Forest Research Institute, University of the Sunshine Coast, Sippy Downs, Queensland, Australia
| | - Maria Pires Martins
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | | | - Italo Mesones
- Department of Integrative Biology, University of California, Berkeley, CA, USA
| | - Faizah Metali
- Environmental and Life Sciences Programme, Faculty of Science, Universiti Brunei Darussalam, Bandar Seri Begawan, Brunei Darussalam
| | - Vianet Mihindou
- Agence Nationale des Parcs Nationaux, Libreville, Gabon
- Ministère de la Forêt, de la Mer, de l'Environnement, Chargé du Plan Climat, Libreville, Gabon
| | - Jerome Millet
- Office français de la biodiversité, Vincennes, France
| | - William Milliken
- Department for Ecosystem Stewardship, Royal Botanic Gardens, Richmond, UK
| | | | - Jean-François Molino
- AMAP, Université de Montpellier, IRD, Cirad, CNRS, INRAE, Montpellier, France
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
| | | | - Abel Monteagudo Mendoza
- Jardín Botánico de Missouri, Oxapampa, Peru
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Cuzco, Peru
| | - Juan Carlos Montero
- Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
- Instituto Boliviano de Investigacion Forestal, Santa Cruz, Santa Cruz, Bolivia
| | - Sam Moore
- Environmental Change Institute, School of Geography and the Environment, University of Oxford, Oxford, UK
| | - Bonifacio Mostacedo
- Facultad de Ciencias Agrícolas, Universidad Autónoma Gabriel René Moreno, Santa Cruz, Santa Cruz, Bolivia
| | | | - Sharif Ahmed Mukul
- Tropical Forests and People Research Centre, University of the Sunshine Coast, Maroochydore DC, Queensland, Australia
- Department of Environment and Development Studies, United International University, Dhaka, Bangladesh
| | - Pantaleo K T Munishi
- Department of Ecosystems and Conservation, Sokoine University of Agriculture, Morogoro, Tanzania
| | | | | | - Marcelo Trindade Nascimento
- Laboratório de Ciências Ambientais, Universidade Estadual do Norte Fluminense, Campos dos Goyatacazes, Brazil
| | - David Neill
- Universidad Estatal Amazónica, Puyo, Ecuador
| | | | | | - Laurent Nsenga
- Service of Wood Biology, Royal Museum for Central Africa, Tervuren, Belgium
| | - Percy Núñez Vargas
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Cuzco, Peru
| | - Lucas Ojo
- University of Abeokuta, Abeokuta, Nigeria
| | - Alexandre A Oliveira
- Instituto de Biociências, Departamento de Ecologia, Universidade de Sao Paulo (USP), São Paulo, Brazil
| | - Edmar Almeida de Oliveira
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil
| | | | | | - Susamar Pansini
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia PPG-Bionorte, Universidade Federal de Rondônia, Porto Velho, Brazil
| | - Marcelo Petratti Pansonato
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
- Instituto de Biociências, Departamento de Ecologia, Universidade de São Paulo (USP), São Paulo, Brazil
| | | | - Ekananda Paudel
- Centre for Mountain Ecosystem Studies, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
| | - Daniela Pauletto
- Instituto de Biodiversidade e Florestas, Universidade Federal do Oeste do Pará, Santarém, Brazil
| | - Richard G Pearson
- Centre for Biodiversity and Environment Research, Department of Genetics, Evolution and Environment, University College London, London, UK
| | | | - R Toby Pennington
- Royal Botanic Garden Edinburgh, Edinburgh, UK
- Department of Geography, College of Life and Environmental Sciences, University of Exeter, Exeter, UK
| | - Carlos A Peres
- School of Environmental Sciences, University of East Anglia, Norwich, UK
| | | | - Pascal Petronelli
- Cirad UMR Ecofog, AgrosParisTech, CNRS, INRAE, Université Guyane, Kourou Cedex, France
| | | | | | | | | | - Maria Teresa Fernandez Piedade
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | - Pierre Ploton
- AMAP, Université de Montpellier, IRD, Cirad, CNRS, INRAE, Montpellier, France
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
| | - Andreas Popelier
- Service of Wood Biology, Royal Museum for Central Africa, Tervuren, Belgium
- UGent-Woodlab, Laboratory of Wood Technology, Department of Environment, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
- Faculté de Gestion de Ressources Naturelles Renouvelables, Université de Kisangani, Kisangani, Democratic Republic of the Congo
| | - John R Poulsen
- Nicholas School of the Environment, Duke University, Durham, NC, USA
- The Nature Conservancy, Boulder, CO, USA
| | - Adriana Prieto
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Bogotá, Colombia
| | | | - Hari Priyadi
- Department of Resource and Environmental Economics (ESL), IPB University, Bogor, Indonesia
| | - Lan Qie
- School of Geography, University of Leeds, Leeds, UK
- School of Life Sciences, University of Lincoln, Lincoln, UK
| | - Adriano Costa Quaresma
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
- Wetland Department, Institute of Geography and Geoecology, Karlsruhe Institute of Technology (KIT), Rastatt, Germany
| | - Helder Lima de Queiroz
- Diretoria Técnico-Científica, Instituto de Desenvolvimento Sustentável Mamirauá, Tefé, Brazil
| | - Hirma Ramirez-Angulo
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Mérida, Mérida, Venezuela
| | - José Ferreira Ramos
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Neidiane Farias Costa Reis
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia PPG-Bionorte, Universidade Federal de Rondônia, Porto Velho, Brazil
| | - Jan Reitsma
- Waardenburg Ecology, Culemborg, The Netherlands
| | | | - Terhi Riutta
- Environmental Change Institute, School of Geography and the Environment, University of Oxford, Oxford, UK
- College of Life Sciences, University of Exeter, Exeter, UK
| | - Gonzalo Rivas-Torres
- Estación de Biodiversidad Tiputini, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito (USFQ), Quito, Ecuador
- University of Florida, Gainesville, FL, USA
| | - Iyan Robiansyah
- Department of Biological Sciences, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia
- Center for Plant Conservation Bogor Botanic Gardens, Indonesian Institute of Science, Bogor, Indonesia
| | - Maira Rocha
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | - M Elizabeth Rodriguez-Ronderos
- Centre for Nature-Based Climate Solutions, Department of Biological Sciences, National University of Singapore, Singapore, Singapore
- Department of Geography, National University of Singapore, Singapore, Singapore
| | - Francesco Rovero
- Deparment of Biology, University of Florence, Sesto Fiorentino, Italy
- Tropical Biodiversity Section, Museo delle Scienze (MUSE), Trento, Italy
| | - Andes H Rozak
- Research Center for Plant Conservation, Botanic Gardens and Forestry, National Research and Innovation Agency (BRIN), Bogor, Indonesia
| | - Agustín Rudas
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Bogotá, Colombia
| | | | - Daniel Sabatier
- AMAP, Université de Montpellier, IRD, Cirad, CNRS, INRAE, Montpellier, France
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
| | - Le Bienfaiteur Sagang
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
- Plant Systematics and Ecology Laboratory, Higher Teachers' Training College, University of Yaoundé I, Yaoundé, Cameroon
- Institute of the Environment and Sustainability, University of California, Los Angeles, CA, USA
| | - Adeilza Felipe Sampaio
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia PPG-Bionorte, Universidade Federal de Rondônia, Porto Velho, Brazil
| | - Ismayadi Samsoedin
- Forest Research and Development Center, Research, Development and Innovation Agency, Ministry of Environment and Forestry, Bogor, Indonesia
| | - Manichanh Satdichanh
- Centre for Mountain Ecosystem Studies, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
| | - Juliana Schietti
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Jochen Schöngart
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Veridiana Vizoni Scudeller
- Departamento de Biologia, Universidade Federal do Amazonas (UFAM)-Instituto de Ciências Biológicas (ICB1), Manaus, Brazil
| | | | - Douglas Sheil
- Forest Ecology and Forest Management Group, Wageningen University and Research, Wageningen, The Netherlands
| | | | - Miles R Silman
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, Winston Salem, NC, USA
| | | | | | - Murielle Simo-Droissart
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
- Plant Systematics and Ecology Laboratory, Higher Teachers' Training College, University of Yaoundé I, Yaoundé, Cameroon
| | | | - Plinio Sist
- Cirad-ES, Campus International de Baillarguet, TA C-105/D, Montpellier, France
| | - Thaiane R Sousa
- Programa de Pós-Graduação em Ecologia, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Emanuelle de Sousa Farias
- Laboratório de Ecologia de Doenças Transmissíveis da Amazônia (EDTA), Instituto Leônidas e Maria Deane, Fiocruz, Manaus, Brazil
- Instituto Oswaldo Cruz (IOC/FIOCRUZ), Rio de Janeiro, Brazil
| | - Luiz de Souza Coelho
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | - Suzanne M Stas
- School of Earth and Environment, University of Leeds, Leeds, UK
| | | | - Pablo R Stevenson
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Bogotá, Colombia
| | - Juliana Stropp
- Biogeography Department, Trier University, Trier, Germany
| | - Rahayu S Sukri
- Institute for Biodiversity and Environmental Research, Universiti Brunei Darussalam, Bandar Seri Begawan, Brunei Darussalam
| | - Terry C H Sunderland
- Center for International Forestry Research (CIFOR), Bogor, Indonesia
- Faculty of Forestry, University of British Columbia, Vancouver, British Columbia, Canada
| | - Eizi Suzuki
- Research Center for the Pacific Islands, Kagoshima University, Kagoshima, Japan
| | - Michael D Swaine
- Department of Plant and Soil Science, School of Biological Sciences, University of Aberdeen, Aberdeen, UK
| | - Jianwei Tang
- Key Laboratory of Tropical Plant Resources and Sustainable Use, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, China
| | - James Taplin
- UK Research and Innovation, Innovate UK, London, UK
| | - David M Taylor
- Department of Geography, National University of Singapore, Singapore, Singapore
| | - J Sebastián Tello
- Center for Conservation and Sustainable Development, Missouri Botanical Garden, St Louis, MO, USA
| | - John Terborgh
- Department of Biology and Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- James Cook University, Cairns, Queensland, Australia
| | | | - Ida Theilade
- Department of Food and Resource Economics, University of Copenhagen, Copenhagen, Denmark
| | - Duncan W Thomas
- School of Biological Sciences, Washington State University, Vancouver, WA, USA
| | - Raquel Thomas
- Iwokrama International Centre for Rain Forest Conservation and Development, Georgetown, Guyana
| | - Sean C Thomas
- Institute of Forestry and Conservation, University of Toronto, Toronto, Ontario, Canada
| | | | - Benjamin Toirambe
- Service of Wood Biology, Royal Museum for Central Africa, Tervuren, Belgium
- Ministère de l'Environnement et Développement Durable, Kinshasa, Democratic Republic of the Congo
| | | | - Kyle W Tomlinson
- Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, China
- Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Menglun, China
| | - Armando Torres-Lezama
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Mérida, Mérida, Venezuela
| | | | - John Tshibamba Mukendi
- Service of Wood Biology, Royal Museum for Central Africa, Tervuren, Belgium
- Faculté de Gestion de Ressources Naturelles Renouvelables, Université de Kisangani, Kisangani, Democratic Republic of the Congo
- Faculté des Sciences Appliquées, Université de Mbujimayi, Mbujimayi, Democratic Republic of the Congo
| | - Roven D Tumaneng
- Phillipines Programme, Fauna and Flora International, Cambridge, UK
- Emerging Technology Development Division, Department of Science and Technology Philippine Council for Industry, Energy and Emerging Technology Research and Development (DOST-PCIEERD), Taguig City, Philippines
| | - Maria Natalia Umaña
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA
| | - Peter M Umunay
- Wildlife Conservation Society, New York, NY, USA
- Yale School of Forestry and Environmental Studies, Yale University, New Haven, CT, USA
| | | | - Elvis H Valderrama Sandoval
- Department of Biology, University of Missouri, St Louis, MO, USA
- Universidad Nacional de la Amazonia Peruana, Iquitos, Peru
| | | | - Tinde R Van Andel
- Naturalis Biodiversity Center, Leiden, The Netherlands
- Wageningen University, Wageningen, The Netherlands
| | - Martin van de Bult
- Doi Tung Development Project, Social Development Department, Chiang Rai, Thailand
| | | | | | | | - César I A Vela
- Escuela Profesional de Ingeniería Forestal, Universidad Nacional de San Antonio Abad del Cusco, Puerto Maldonado, Peru
| | | | - Hans Verbeeck
- CAVElab-Computational and Applied Vegetation Ecology, Department of Environment, Ghent University, Ghent, Belgium
| | | | - Alberto Vicentini
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | - Emilio Vilanova Torre
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Mérida, Mérida, Venezuela
- Wildlife Conservation Society, New York, NY, USA
| | - Daniel Villarroel
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Santa Cruz, Bolivia
- Fundación Amigos de la Naturaleza (FAN), Santa Cruz, Bolivia
| | | | - Jason Vleminckx
- International Center for Tropical Botany, Department of Biological Sciences, Florida International University, Miami, FL, USA
- Faculté des Sciences, Service d'Évolution Biologique et Écologie, Université Libre de Bruxelles, Brussels, Belgium
| | | | - Vincent Antoine Vos
- Instituto de Investigaciones Forestales de la Amazonía, Universidad Autónoma del Beni José Ballivián, Riberalta, Beni, Bolivia
| | | | - Edward L Webb
- Viikki Tropical Resources Institute, Department of Forest Sciences, University of Helsinki, Helsinki, Finland
- Helsinki Institute of Sustainability Science (HELSUS), Helsinki, Finland
| | - Lee J T White
- Ministry of Forests, Seas, Environment and Climate, Libreville, Gabon
- Department of Biological and Environmental Sciences, University of Stirling, Stirling, UK
- Institut de Recherche en Écologie Tropicale, Libreville, Gabon
| | - Serge Wich
- School of Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, UK
| | - Florian Wittmann
- Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
- Wetland Department, Institute of Geography and Geoecology, Karlsruhe Institute of Technology (KIT), Rastatt, Germany
| | | | - Runguo Zang
- Key Laboratory of Forest Ecology and Environment of State Forestry Administration, Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing, China
| | - Charles Eugene Zartman
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Lise Zemagho
- International Joint Laboratory DYCOFAC, IRD-UYI-IRGM, Yaoundé, Cameroon
- Plant Systematics and Ecology Laboratory, Higher Teachers' Training College, University of Yaoundé I, Yaoundé, Cameroon
| | - Egleé L Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas (IVIC), Caracas, Venezuela
| | - Stanford Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas (IVIC), Caracas, Venezuela
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Ter Steege H, Pitman NCA, do Amaral IL, de Souza Coelho L, de Almeida Matos FD, de Andrade Lima Filho D, Salomão RP, Wittmann F, Castilho CV, Guevara JE, Veiga Carim MDJ, Phillips OL, Magnusson WE, Sabatier D, Revilla JDC, Molino JF, Irume MV, Martins MP, da Silva Guimarães JR, Ramos JF, Bánki OS, Piedade MTF, Cárdenas López D, Rodrigues DDJ, Demarchi LO, Schöngart J, Almeida EJ, Barbosa LF, Cavalheiro L, Dos Santos MCV, Luize BG, de Leão Novo EMM, Vargas PN, Silva TSF, Venticinque EM, Manzatto AG, Reis NFC, Terborgh J, Casula KR, Honorio Coronado EN, Monteagudo Mendoza A, Montero JC, Costa FRC, Feldpausch TR, Quaresma AC, Castaño Arboleda N, Zartman CE, Killeen TJ, Marimon BS, Marimon-Junior BH, Vasquez R, Mostacedo B, Assis RL, Baraloto C, do Amaral DD, Engel J, Petronelli P, Castellanos H, de Medeiros MB, Simon MF, Andrade A, Camargo JL, Laurance WF, Laurance SGW, Maniguaje Rincón L, Schietti J, Sousa TR, de Sousa Farias E, Lopes MA, Magalhães JLL, Nascimento HEM, de Queiroz HL, Aymard C GA, Brienen R, Stevenson PR, Araujo-Murakami A, Baker TR, Cintra BBL, Feitosa YO, Mogollón HF, Duivenvoorden JF, Peres CA, Silman MR, Ferreira LV, Lozada JR, Comiskey JA, Draper FC, de Toledo JJ, Damasco G, García-Villacorta R, Lopes A, Vicentini A, Cornejo Valverde F, Alonso A, Arroyo L, Dallmeier F, Gomes VHF, Jimenez EM, Neill D, Peñuela Mora MC, Noronha JC, de Aguiar DPP, Barbosa FR, Bredin YK, de Sá Carpanedo R, Carvalho FA, de Souza FC, Feeley KJ, Gribel R, Haugaasen T, Hawes JE, Pansonato MP, Ríos Paredes M, Barlow J, Berenguer E, da Silva IB, Ferreira MJ, Ferreira J, Fine PVA, Guedes MC, Levis C, Licona JC, Villa Zegarra BE, Vos VA, Cerón C, Durgante FM, Fonty É, Henkel TW, Householder JE, Huamantupa-Chuquimaco I, Pos E, Silveira M, Stropp J, Thomas R, Daly D, Dexter KG, Milliken W, Molina GP, Pennington T, Vieira ICG, Weiss Albuquerque B, Campelo W, Fuentes A, Klitgaard B, Pena JLM, Tello JS, Vriesendorp C, Chave J, Di Fiore A, Hilário RR, de Oliveira Pereira L, Phillips JF, Rivas-Torres G, van Andel TR, von Hildebrand P, Balee W, Barbosa EM, de Matos Bonates LC, Dávila Doza HP, Zárate Gómez R, Gonzales T, Gallardo Gonzales GP, Hoffman B, Junqueira AB, Malhi Y, de Andrade Miranda IP, Pinto LFM, Prieto A, Rudas A, Ruschel AR, Silva N, Vela CIA, Zent EL, Zent S, Cano A, Carrero Márquez YA, Correa DF, Costa JBP, Flores BM, Galbraith D, Holmgren M, Kalamandeen M, Lobo G, Torres Montenegro L, Nascimento MT, Oliveira AA, Pombo MM, Ramirez-Angulo H, Rocha M, Scudeller VV, Sierra R, Tirado M, Umaña MN, van der Heijden G, Vilanova Torre E, Reategui MAA, Baider C, Balslev H, Cárdenas S, Casas LF, Endara MJ, Farfan-Rios W, Ferreira C, Linares-Palomino R, Mendoza C, Mesones I, Parada GA, Torres-Lezama A, Urrego Giraldo LE, Villarroel D, Zagt R, Alexiades MN, de Oliveira EA, Garcia-Cabrera K, Hernandez L, Cuenca WP, Pansini S, Pauletto D, Ramirez Arevalo F, Sampaio AF, Valderrama Sandoval EH, Gamarra LV, Levesley A, Pickavance G, Melgaço K. Mapping density, diversity and species-richness of the Amazon tree flora. Commun Biol 2023; 6:1130. [PMID: 37938615 PMCID: PMC10632362 DOI: 10.1038/s42003-023-05514-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 10/26/2023] [Indexed: 11/09/2023] Open
Abstract
Using 2.046 botanically-inventoried tree plots across the largest tropical forest on Earth, we mapped tree species-diversity and tree species-richness at 0.1-degree resolution, and investigated drivers for diversity and richness. Using only location, stratified by forest type, as predictor, our spatial model, to the best of our knowledge, provides the most accurate map of tree diversity in Amazonia to date, explaining approximately 70% of the tree diversity and species-richness. Large soil-forest combinations determine a significant percentage of the variation in tree species-richness and tree alpha-diversity in Amazonian forest-plots. We suggest that the size and fragmentation of these systems drive their large-scale diversity patterns and hence local diversity. A model not using location but cumulative water deficit, tree density, and temperature seasonality explains 47% of the tree species-richness in the terra-firme forest in Amazonia. Over large areas across Amazonia, residuals of this relationship are small and poorly spatially structured, suggesting that much of the residual variation may be local. The Guyana Shield area has consistently negative residuals, showing that this area has lower tree species-richness than expected by our models. We provide extensive plot meta-data, including tree density, tree alpha-diversity and tree species-richness results and gridded maps at 0.1-degree resolution.
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Affiliation(s)
- Hans Ter Steege
- Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands.
- Quantitative Biodiversity Dynamics, Utrecht University, Padualaan 8, Utrecht, 3584 CH, The Netherlands.
| | - Nigel C A Pitman
- Science and Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL, 60605-2496, USA
| | - Iêda Leão do Amaral
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Luiz de Souza Coelho
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Francisca Dionízia de Almeida Matos
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Diógenes de Andrade Lima Filho
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Rafael P Salomão
- Programa Professor Visitante Nacional Sênior na Amazônia - CAPES, Universidade Federal Rural da Amazônia, Av. Perimetral, s/n, Belém, PA, Brazil
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040, Brazil
| | - Florian Wittmann
- Wetland Department, Institute of Geography and Geoecology, Karlsruhe Institute of Technology - KIT, Josefstr.1, Rastatt, D-76437, Germany
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Carolina V Castilho
- Centro de Pesquisa Agroflorestal de Roraima, Embrapa Roraima, BR 174, km 8 - Distrito Industrial, Boa Vista, RR, 69301-970, Brazil
| | - Juan Ernesto Guevara
- Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud-BIOMAS, Universidad de las Américas, Campus Queri, Quito, Ecuador
- Keller Science Action Center, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL, 60605-2496, USA
| | - Marcelo de Jesus Veiga Carim
- Departamento de Botânica, Instituto de Pesquisas Científicas e Tecnológicas do Amapá - IEPA, Rodovia JK, Km 10, Campus do IEPA da Fazendinha, Macapá, AP, 68901-025, Brazil
| | - Oliver L Phillips
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - William E Magnusson
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Daniel Sabatier
- AMAP, IRD, Cirad, CNRS, INRAE, Université de Montpellier, Montpellier, F-34398, France
| | - Juan David Cardenas Revilla
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Jean-François Molino
- AMAP, IRD, Cirad, CNRS, INRAE, Université de Montpellier, Montpellier, F-34398, France
| | - Mariana Victória Irume
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Maria Pires Martins
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | - José Ferreira Ramos
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Olaf S Bánki
- Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands
| | - Maria Teresa Fernandez Piedade
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Dairon Cárdenas López
- Herbario Amazónico Colombiano, Instituto SINCHI, Calle 20 No 5-44, Bogotá, DC, Colombia
| | - Domingos de Jesus Rodrigues
- ICNHS, Federal University of Mato Grosso, Av. Alexandre Ferronato 1200, Setor Industrial, Sinop, MT, 78.557-267, Brazil
| | - Layon O Demarchi
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Jochen Schöngart
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Everton José Almeida
- ICNHS, Universidade Federal de Mato Grosso, Av. Alexandre Ferronato, 1200, Sinop, MT, 78557-267, Brazil
| | - Luciane Ferreira Barbosa
- ICNHS, Universidade Federal de Mato Grosso, Av. Alexandre Ferronato, 1200, Sinop, MT, 78557-267, Brazil
| | - Larissa Cavalheiro
- ICNHS, Universidade Federal de Mato Grosso, Av. Alexandre Ferronato, 1200, Sinop, MT, 78557-267, Brazil
| | | | - Bruno Garcia Luize
- Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas - UNICAMP, CP 6109, Campinas, SP, 13083-970, Brazil
| | - Evlyn Márcia Moraes de Leão Novo
- Divisao de Sensoriamento Remoto - DSR, Instituto Nacional de Pesquisas Espaciais - INPE, Av. dos Astronautas, 1758, Jardim da Granja, São José dos Campos, SP, 12227-010, Brazil
| | - Percy Núñez Vargas
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Avenida de la Cultura, Nro 733, Cusco, Cuzco, Peru
| | | | - Eduardo Martins Venticinque
- Centro de Biociências, Departamento de Ecologia, Universidade Federal do Rio Grande do Norte, Av. Senador Salgado Filho, 3000, Natal, RN, 59072-970, Brazil
| | - Angelo Gilberto Manzatto
- Departamento de Biologia, Universidade Federal de Rondônia, Rodovia BR 364 s/n Km 9,5 - Sentido Acre, Unir, Porto Velho, RO, 76.824-027, Brazil
| | - Neidiane Farias Costa Reis
- Programa de Pós- Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Campus Porto Velho Km 9,5 bairro Rural, Porto Velho, RO, 76.824-027, Brazil
| | - John Terborgh
- Department of Biology and Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, 4870, Australia
| | - Katia Regina Casula
- Programa de Pós- Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Campus Porto Velho Km 9,5 bairro Rural, Porto Velho, RO, 76.824-027, Brazil
| | - Euridice N Honorio Coronado
- Instituto de Investigaciones de la Amazonía Peruana (IIAP), Av. A. Quiñones km 2,5, Iquitos, Loreto, 784, Peru
- School of Geography and Sustainable Development, University of St Andrews, Irvine Building, St Andrews, KY16 9AL, UK
| | - Abel Monteagudo Mendoza
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Avenida de la Cultura, Nro 733, Cusco, Cuzco, Peru
- Jardín Botánico de Missouri, Oxapampa, Pasco, Peru
| | - Juan Carlos Montero
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
- Instituto Boliviano de Investigacion Forestal, Av. 6 de agosto #28, Km. 14, Doble via La Guardia, Casilla, Santa Cruz, 6204, Santa Cruz, Bolivia
| | - Flávia R C Costa
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Ted R Feldpausch
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
- Geography, College of Life and Environmental Sciences, University of Exeter, Rennes Drive, Exeter, EX4 4RJ, UK
| | - Adriano Costa Quaresma
- Wetland Department, Institute of Geography and Geoecology, Karlsruhe Institute of Technology - KIT, Josefstr.1, Rastatt, D-76437, Germany
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | - Charles Eugene Zartman
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | - Beatriz S Marimon
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, MT, Brazil
| | - Ben Hur Marimon-Junior
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, MT, Brazil
| | | | - Bonifacio Mostacedo
- Facultad de Ciencias Agrícolas, Universidad Autónoma Gabriel René Moreno, Santa Cruz, Santa Cruz, Bolivia
| | - Rafael L Assis
- Biodiversity and Ecosystem Services, Instituto Tecnológico Vale, Belém, Pará, Brazil
| | - Chris Baraloto
- International Center for Tropical Botany (ICTB) Department of Biological Sciences, Florida International University, 11200 SW 8th Street, OE 243, Miami, FL, 33199, USA
| | - Dário Dantas do Amaral
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040, Brazil
| | - Julien Engel
- AMAP, IRD, Cirad, CNRS, INRAE, Université de Montpellier, Montpellier, F-34398, France
- International Center for Tropical Botany (ICTB) Department of Biological Sciences, Florida International University, 11200 SW 8th Street, OE 243, Miami, FL, 33199, USA
| | - Pascal Petronelli
- Cirad UMR Ecofog, AgrosParisTech, CNRS, INRAE, Univ Guyane, Campus agronomique, Kourou Cedex, 97379, France
| | - Hernán Castellanos
- Centro de Investigaciones Ecológicas de Guayana, Universidad Nacional Experimental de Guayana, Calle Chile, urbaniz Chilemex, Puerto Ordaz, Bolivar, Venezuela
| | - Marcelo Brilhante de Medeiros
- Embrapa Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Prédio da Botânica e Ecologia, Brasilia, DF, 70770-917, Brazil
| | - Marcelo Fragomeni Simon
- Embrapa Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Prédio da Botânica e Ecologia, Brasilia, DF, 70770-917, Brazil
| | - Ana Andrade
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - José Luís Camargo
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - William F Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, 4870, Australia
| | - Susan G W Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, 4870, Australia
| | - Lorena Maniguaje Rincón
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Juliana Schietti
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Thaiane R Sousa
- Programa de Pós-Graduação em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Emanuelle de Sousa Farias
- Laboratório de Ecologia de Doenças Transmissíveis da Amazônia (EDTA), Instituto Leônidas e Maria Deane, Fiocruz, Rua Terezina, 476, Adrianópolis, Manaus, AM, 69060-001, Brazil
- Programa de Pós-graduação em Biodiversidade e Saúde, Instituto Oswaldo Cruz - IOC/FIOCRUZ, Pav. Arthur Neiva - Térreo, Av. Brasil, 4365 - Manguinhos, Rio de Janeiro, RJ, 21040-360, Brazil
| | - Maria Aparecida Lopes
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Av. Augusto Corrêa 01, Belém, PA, 66075, Brazil
| | - José Leonardo Lima Magalhães
- Programa de Pós-Graduação em Ecologia, Universidade Federal do Pará, Av. Augusto Corrêa 01, Belém, PA, 66075-110, Brazil
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amazônia Oriental, Trav. Dr. Enéas Pinheiro s/n°, Belém, PA, 66095-903, Brazil
| | - Henrique Eduardo Mendonça Nascimento
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Helder Lima de Queiroz
- Diretoria Técnico-Científica, Instituto de Desenvolvimento Sustentável Mamirauá, Estrada do Bexiga, 2584, Tefé, AM, 69470-000, Brazil
| | - Gerardo A Aymard C
- Programa de Ciencias del Agro y el Mar, Herbario Universitario (PORT), UNELLEZ-Guanare, Guanare, Portuguesa, 3350, Venezuela
| | - Roel Brienen
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Pablo R Stevenson
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
| | - Alejandro Araujo-Murakami
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Avenida Irala 565 Casilla Post al 2489, Santa Cruz, Santa Cruz, Bolivia
| | - Tim R Baker
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | | | - Yuri Oliveira Feitosa
- Programa de Pós-Graduação em Biologia (Botânica), Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, 69067, Brazil
| | - Hugo F Mogollón
- Endangered Species Coalition, 8530 Geren Rd., Silver Spring, MD, 20901, USA
| | - Joost F Duivenvoorden
- Institute of Biodiversity and Ecosystem Dynamics, University of Amsterdam, Sciencepark 904, Amsterdam, 1098 XH, The Netherlands
| | - Carlos A Peres
- School of Environmental Sciences, University of East Anglia, Norwich, NR4 7TJ, UK
| | - Miles R Silman
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, 1834 Wake Forest Rd, Winston Salem, NC, 27106, USA
| | - Leandro Valle Ferreira
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040, Brazil
| | - José Rafael Lozada
- Facultad de Ciencias Forestales y Ambientales, Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Via Chorros de Milla, 5101, Mérida, Mérida, Venezuela
| | - James A Comiskey
- Inventory and Monitoring Program, National Park Service, 120 Chatham Lane, Fredericksburg, VA, 22405, USA
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - Freddie C Draper
- Department of Geography and Planning, University of Liverpool, Liverpool, L69 3BX, UK
| | - José Julio de Toledo
- Universidade Federal do Amapá, Ciências Ambientais, Rod. Juscelino Kubitschek km2, Macapá, AP, 68902-280, Brazil
| | - Gabriel Damasco
- Gothenburg Global Biodiversity Centre, University of Gothenburg, Carl Skottbergs gata 22b, Gothenburg, 413 19, Sweden
| | - Roosevelt García-Villacorta
- Programa Restauración de Ecosistemas (PRE), Centro de Innovación Científica Amazónica (CINCIA), Jr. Cajamarca Cdra. 1 s/n, Tambopata, Madre de Dios, Peru
- Peruvian Center for Biodiversity and Conservation (PCBC), Iquitos, Loreto, Peru
| | - Aline Lopes
- Department of Ecology, Institute of Biological Sciences, University of Brasilia, Brasilia, DF, 70904-970, Brazil
| | - Alberto Vicentini
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | - Alfonso Alonso
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - Luzmila Arroyo
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Avenida Irala 565 Casilla Post al 2489, Santa Cruz, Santa Cruz, Bolivia
| | - Francisco Dallmeier
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - Vitor H F Gomes
- Escola de Negócios Tecnologia e Inovação, Centro Universitário do Pará, Belém, PA, Brazil
- Environmental Science Program, Geosciences Department, Universidade Federal do Pará, Rua Augusto Corrêa 01, Belém, PA, 66075-110, Brazil
| | - Eliana M Jimenez
- Grupo de Ecología y Conservación de Fauna y Flora Silvestre, Instituto Amazónico de Investigaciones Imani, Universidad Nacional de Colombia sede Amazonia, Leticia, Amazonas, Colombia
| | - David Neill
- Universidad Estatal Amazónica, Puyo, Pastaza, Ecuador
| | | | - Janaína Costa Noronha
- ICNHS, Federal University of Mato Grosso, Av. Alexandre Ferronato 1200, Setor Industrial, Sinop, MT, 78.557-267, Brazil
| | - Daniel P P de Aguiar
- Procuradoria-Geral de Justiça, Ministério Público do Estado do Amazonas, Av. Coronel Teixeira, 7995, Manaus, AM, 69037-473, Brazil
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Flávia Rodrigues Barbosa
- ICNHS, Federal University of Mato Grosso, Av. Alexandre Ferronato 1200, Setor Industrial, Sinop, MT, 78.557-267, Brazil
| | - Yennie K Bredin
- Norwegian University of Life Sciences (NMBU), Faculty of Environmental Sciences and Natural Resource Management, P.O. Box 5003 NMBU, Aas, 1432, Aas, Norway
- Norwegian Institute for Nature Research (NINA), Sognsveien 68, Oslo, 0855, Oslo, Norway
| | - Rainiellen de Sá Carpanedo
- ICNHS, Federal University of Mato Grosso, Av. Alexandre Ferronato 1200, Setor Industrial, Sinop, MT, 78.557-267, Brazil
| | - Fernanda Antunes Carvalho
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
- Universidade Federal de Minas Gerais, Instituto de Ciências Biológicas, Departamento de Genética, Ecologia e Evolução, Av. Antônio Carlos, 6627 Pampulha, Belo Horizonte, MG, 31270-901, Brazil
| | - Fernanda Coelho de Souza
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Kenneth J Feeley
- Department of Biology, University of Miami, Coral Gables, FL, 33146, USA
- Fairchild Tropical Botanic Garden, Coral Gables, FL, 33156, USA
| | - Rogerio Gribel
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Torbjørn Haugaasen
- Norwegian University of Life Sciences (NMBU), Faculty of Environmental Sciences and Natural Resource Management, P.O. Box 5003 NMBU, Aas, 1432, Aas, Norway
| | - Joseph E Hawes
- Institute of Science and Environment, University of Cumbria, Ambleside, Cumbria, LA22 9BB, UK
| | - Marcelo Petratti Pansonato
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
- Instituto de Biociências - Dept. Ecologia, Universidade de Sao Paulo - USP, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP, 05508-090, Brazil
| | - Marcos Ríos Paredes
- Servicios de Biodiversidad EIRL, Jr. Independencia 405, Iquitos, Loreto, 784, Peru
| | - Jos Barlow
- Lancaster Environment Centre, Lancaster University, Lancaster, Lancashire, LA1 4YQ, UK
| | - Erika Berenguer
- Lancaster Environment Centre, Lancaster University, Lancaster, Lancashire, LA1 4YQ, UK
- Environmental Change Institute, University of Oxford, Oxford, Oxfordshire, OX1 3QY, UK
| | - Izaias Brasil da Silva
- Postgraduate program in Biodiversity and Biotechnology - Bionorte, Federal University of Acre, Rodovia 364, km 4.5, Distrito industrial, Rio Branco, AC, 69900-000, Brazil
| | - Maria Julia Ferreira
- Postgraduate program in Ethnobiology and Nature Conservation, Federal Rural University of Pernambuco (UFRPE), Rua Dom Manuel de Medeiros, s/n, Dois Irmãos, Pernambuco, PB, 52171-900, Brazil
| | - Joice Ferreira
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amazônia Oriental, Trav. Dr. Enéas Pinheiro s/n°, Belém, PA, 66095-903, Brazil
| | - Paul V A Fine
- Department of Integrative Biology, University of California, Berkeley, CA, 94720-3140, USA
| | - Marcelino Carneiro Guedes
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amapá, Rod. Juscelino Kubitschek km 5, Macapá, AP, 68903-419, Brazil
| | - Carolina Levis
- Graduate Program in Ecology, Federal University of Santa Catarina (UFSC), Campus Universitário - Córrego Grande, Florianópolis, SC, 88040-900, Brazil
| | - Juan Carlos Licona
- Instituto Boliviano de Investigacion Forestal, Av. 6 de agosto #28, Km. 14, Doble via La Guardia, Casilla, Santa Cruz, 6204, Santa Cruz, Bolivia
| | | | - Vincent Antoine Vos
- Instituto de Investigaciones Forestales de la Amazonía, Universidad Autónoma del Beni José Ballivián, Campus Universitario Final, Av. Ejercito, Riberalta, Beni, Bolivia
| | - Carlos Cerón
- Escuela de Biología Herbario Alfredo Paredes, Universidad Central, Ap. Postal, 17.01.2177, Quito, Pichincha, Ecuador
| | - Flávia Machado Durgante
- Wetland Department, Institute of Geography and Geoecology, Karlsruhe Institute of Technology - KIT, Josefstr.1, Rastatt, D-76437, Germany
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Émile Fonty
- AMAP, IRD, Cirad, CNRS, INRAE, Université de Montpellier, Montpellier, F-34398, France
- Direction régionale de la Guyane, Office national des forêts, Cayenne, 97300, French Guiana
| | - Terry W Henkel
- Department of Biological Sciences, California State Polytechnic University, 1 Harpst Street, Arcata, CA, 95521, USA
| | - John Ethan Householder
- Wetland Department, Institute of Geography and Geoecology, Karlsruhe Institute of Technology - KIT, Josefstr.1, Rastatt, D-76437, Germany
| | - Isau Huamantupa-Chuquimaco
- Herbario HAG, Universidad Nacional Amazónica de Madre de Dios (UNAMAD), Av. Jorge Chávez, 1160, Puerto Maldonado, Madre de Dios, Peru
| | - Edwin Pos
- Quantitative Biodiversity Dynamics, Utrecht University, Padualaan 8, Utrecht, 3584 CH, The Netherlands
- Utrecht University Botanic Gardens, P.O. Box 80162, Utrecht, 3508 TD, The Netherlands
| | - Marcos Silveira
- Centro de Ciências Biológicas e da Natureza, Universidade Federal do Acre, Rodovia BR 364, Km 4, s/n, Distrito Industrial, Rio Branco, AC, 69915-559, Brazil
| | - Juliana Stropp
- Museo Nacional de Ciencias Naturales (MNCN-CSIC), C. de José Gutiérrez Abascal 2, Madrid, 28006, Spain
| | - Raquel Thomas
- Iwokrama International Centre for Rain Forest Conservation and Development, Georgetown, Guyana
| | - Doug Daly
- New York Botanical Garden, 2900 Southern Blvd, Bronx, New York, NY, 10458-5126, USA
| | - Kyle G Dexter
- School of Geosciences, University of Edinburgh, 201 Crew Building, King's Buildings, Edinburgh, EH9 3JN, UK
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, 20a Inverleith Row, Edinburgh, Scotland, EH3 5LR, UK
| | - William Milliken
- Department for Ecosystem Stewardship, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AE, UK
| | - Guido Pardo Molina
- Instituto de Investigaciones Forestales de la Amazonía, Universidad Autónoma del Beni José Ballivián, Campus Universitario Final, Av. Ejercito, Riberalta, Beni, Bolivia
| | - Toby Pennington
- Geography, College of Life and Environmental Sciences, University of Exeter, Rennes Drive, Exeter, EX4 4RJ, UK
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, 20a Inverleith Row, Edinburgh, Scotland, EH3 5LR, UK
| | - Ima Célia Guimarães Vieira
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040, Brazil
| | - Bianca Weiss Albuquerque
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Wegliane Campelo
- Universidade Federal do Amapá, Ciências Ambientais, Rod. Juscelino Kubitschek km2, Macapá, AP, 68902-280, Brazil
| | - Alfredo Fuentes
- Herbario Nacional de Bolivia, Universitario UMSA, Casilla 10077 Correo Central, La Paz, La Paz, Bolivia
- Center for Conservation and Sustainable Development, Missouri Botanical Garden, P.O. Box 299, St. Louis, MO, 63166-0299, USA
| | - Bente Klitgaard
- Department for Accelerated Taxonomy, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AE, UK
| | - José Luis Marcelo Pena
- Universidad Nacional de Jaén, Carretera Jaén San Ignacio Km 23, Jaén, Cajamarca, 06801, Peru
| | - J Sebastián Tello
- Center for Conservation and Sustainable Development, Missouri Botanical Garden, P.O. Box 299, St. Louis, MO, 63166-0299, USA
| | - Corine Vriesendorp
- Science and Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL, 60605-2496, USA
| | - Jerome Chave
- Laboratoire Evolution et Diversité Biologique, CNRS and Université Paul Sabatier, UMR 5174 EDB, Toulouse, 31000, France
| | - Anthony Di Fiore
- Department of Anthropology, University of Texas at Austin, SAC 5.150, 2201 Speedway Stop C3200, Austin, TX, 78712, USA
- Estación de Biodiversidad Tiputini, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito-USFQ, Quito, Pichincha, Ecuador
| | - Renato Richard Hilário
- Universidade Federal do Amapá, Ciências Ambientais, Rod. Juscelino Kubitschek km2, Macapá, AP, 68902-280, Brazil
| | - Luciana de Oliveira Pereira
- Geography, College of Life and Environmental Sciences, University of Exeter, Rennes Drive, Exeter, EX4 4RJ, UK
| | | | - Gonzalo Rivas-Torres
- Estación de Biodiversidad Tiputini, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito-USFQ, Quito, Pichincha, Ecuador
- Department of Wildlife Ecology and Conservation, University of Florida, 110 Newins-Ziegler Hall, Gainesville, FL, 32611, USA
| | - Tinde R van Andel
- Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands
- Biosystematics group, Wageningen University, Droevendaalsesteeg 1, Wageningen, 6708 PB, The Netherlands
| | | | - William Balee
- Department of Anthropology, Tulane University, 101 Dinwiddie Hall, 6823 St. Charles Avenue, New Orleans, LA, 70118, USA
| | - Edelcilio Marques Barbosa
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Luiz Carlos de Matos Bonates
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | - Ricardo Zárate Gómez
- PROTERRA, Instituto de Investigaciones de la Amazonía Peruana (IIAP), Av. A. Quiñones km 2,5, Iquitos, Loreto, 784, Peru
| | - Therany Gonzales
- ACEER Foundation, Jirón Cusco N° 370, Puerto Maldonado, Madre de Dios, Peru
| | | | - Bruce Hoffman
- Amazon Conservation Team, 4211 North Fairfax Drive, Arlington, VA, 22203, USA
| | - André Braga Junqueira
- Institut de Ciència i Tecnologia Ambientals, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, 08193, Spain
| | - Yadvinder Malhi
- Environmental Change Institute, Oxford University Centre for the Environment, Dyson Perrins Building, South Parks Road, Oxford, England, OX1 3QY, UK
| | - Ires Paula de Andrade Miranda
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | - Adriana Prieto
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Apartado, 7945, Bogotá, DC, Colombia
| | - Agustín Rudas
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Apartado, 7945, Bogotá, DC, Colombia
| | - Ademir R Ruschel
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amazônia Oriental, Trav. Dr. Enéas Pinheiro s/n°, Belém, PA, 66095-903, Brazil
| | - Natalino Silva
- Instituto de Ciência Agrárias, Universidade Federal Rural da Amazônia, Av. Presidente Tancredo Neves 2501, Belém, PA, 66.077-830, Brazil
| | - César I A Vela
- Escuela Profesional de Ingeniería Forestal, Universidad Nacional de San Antonio Abad del Cusco, Jirón San Martín 451, Puerto Maldonado, Madre de Dios, Peru
| | - Egleé L Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas - IVIC, Ado 20632, Caracas, DC, 1020A, Venezuela
| | - Stanford Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas - IVIC, Ado 20632, Caracas, DC, 1020A, Venezuela
| | - Angela Cano
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
- Cambridge University Botanic Garden, Cambridge University, 1 Brookside, Cambridge, CB2 1JE, UK
| | | | - Diego F Correa
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
- Centre for Biodiversity and Conservation Science CBCS, The University of Queensland, Brisbane, QLD, 4072, Australia
| | - Janaina Barbosa Pedrosa Costa
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amapá, Rod. Juscelino Kubitschek km 5, Macapá, AP, 68903-419, Brazil
| | - Bernardo Monteiro Flores
- Graduate Program in Ecology, Federal University of Santa Catarina (UFSC), Campus Universitário - Córrego Grande, Florianópolis, SC, 88040-900, Brazil
| | - David Galbraith
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Milena Holmgren
- Resource Ecology Group, Wageningen University & Research, Droevendaalsesteeg 3a, Lumen, building number 100, Wageningen, Gelderland, 6708 PB, The Netherlands
| | - Michelle Kalamandeen
- School of Earth, Environment and Society, McMaster University, 1280 Main Street West, Hamilton, Ontario, L8S 4K1, Canada
| | - Guilherme Lobo
- Núcleo de Estudos e Pesquisas Ambientais, Universidade Estadual de Campinas - UNICAMP, CP 6109, Campinas, SP, 13083-867, Brazil
| | - Luis Torres Montenegro
- Herbarium Amazonense (AMAZ), Universidad Nacional de la Amazonia Peruana, Calle Pebas/Nanay, Iquitos, Loreto, Peru
| | - Marcelo Trindade Nascimento
- Laboratório de Ciências Ambientais, Universidade Estadual do Norte Fluminense, Av. Alberto Lamego 2000, Campos dos Goytacazes, RJ, 28013-620, Brazil
| | - Alexandre A Oliveira
- Instituto de Biociências - Dept. Ecologia, Universidade de Sao Paulo - USP, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP, 05508-090, Brazil
| | - Maihyra Marina Pombo
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Hirma Ramirez-Angulo
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Conjunto Forestal, 5101, Mérida, Mérida, Venezuela
| | - Maira Rocha
- Ecology, Monitoring and Sustainable Use of Wetlands (MAUA), Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Veridiana Vizoni Scudeller
- Departamento de Biologia, Universidade Federal do Amazonas - UFAM - Instituto de Ciências Biológicas - ICB1, Av General Rodrigo Octavio 6200, Manaus, AM, 69080-900, Brazil
| | - Rodrigo Sierra
- GeoIS, El Día 369y El Telégrafo, 3° Piso, Quito, Pichincha, Ecuador
| | - Milton Tirado
- GeoIS, El Día 369y El Telégrafo, 3° Piso, Quito, Pichincha, Ecuador
| | - Maria Natalia Umaña
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Geertje van der Heijden
- Faculty of Social Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD, UK
| | - Emilio Vilanova Torre
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Conjunto Forestal, 5101, Mérida, Mérida, Venezuela
- Wildlife Conservation Society (WCS), 2300 Southern Boulevard, Bronx, New York, NY, 10460, USA
| | | | - Cláudia Baider
- Instituto de Biociências - Dept. Ecologia, Universidade de Sao Paulo - USP, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP, 05508-090, Brazil
- The Mauritius Herbarium, Agricultural Services, Ministry of Agro-Industry and Food Security, Reduit, 80835, Mauritius
| | - Henrik Balslev
- Department of Biology, Aarhus University, Building 1540, Aarhus C, Aarhus, 8000, Denmark
| | - Sasha Cárdenas
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
| | - Luisa Fernanda Casas
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
| | - María José Endara
- Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud-BIOMAS, Universidad de las Américas, Campus Queri, Quito, Ecuador
| | - William Farfan-Rios
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Avenida de la Cultura, Nro 733, Cusco, Cuzco, Peru
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, 1834 Wake Forest Rd, Winston Salem, NC, 27106, USA
| | - Cid Ferreira
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Reynaldo Linares-Palomino
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - Casimiro Mendoza
- Escuela de Ciencias Forestales (ESFOR), Universidad Mayor de San Simon (UMSS), Sacta, Cochabamba, Bolivia
- FOMABO, Manejo Forestal en las Tierras Tropicales de Bolivia, Sacta, Cochabamba, Bolivia
| | - Italo Mesones
- Department of Integrative Biology, University of California, Berkeley, CA, 94720-3140, USA
| | - Germaine Alexander Parada
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Avenida Irala 565 Casilla Post al 2489, Santa Cruz, Santa Cruz, Bolivia
| | - Armando Torres-Lezama
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Conjunto Forestal, 5101, Mérida, Mérida, Venezuela
| | - Ligia Estela Urrego Giraldo
- Departamento de Ciencias Forestales, Universidad Nacional de Colombia, Calle 64 x Cra 65, Medellín, Antioquia, 1027, Colombia
| | - Daniel Villarroel
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Avenida Irala 565 Casilla Post al 2489, Santa Cruz, Santa Cruz, Bolivia
- Fundación Amigos de la Naturaleza (FAN), Km. 7 1/2 Doble Vía La Guardia, Santa Cruz, Bolivia
| | - Roderick Zagt
- Tropenbos International, Horaplantsoen 12, Ede, 6717 LT, The Netherlands
| | - Miguel N Alexiades
- School of Anthropology and Conservation, University of Kent, Marlowe Building, Canterbury, Kent, CT2 7NR, UK
| | - Edmar Almeida de Oliveira
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, MT, Brazil
| | - Karina Garcia-Cabrera
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, 1834 Wake Forest Rd, Winston Salem, NC, 27106, USA
| | - Lionel Hernandez
- Centro de Investigaciones Ecológicas de Guayana, Universidad Nacional Experimental de Guayana, Calle Chile, urbaniz Chilemex, Puerto Ordaz, Bolivar, Venezuela
| | | | - Susamar Pansini
- Programa de Pós- Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Campus Porto Velho Km 9,5 bairro Rural, Porto Velho, RO, 76.824-027, Brazil
| | - Daniela Pauletto
- Instituto de Biodiversidade e Florestas, Universidade Federal do Oeste do Pará, Rua Vera Paz, Campus Tapajós, Santarém, PA, 68015-110, Brazil
| | - Freddy Ramirez Arevalo
- Facultad de Biologia, Universidad Nacional de la Amazonia Peruana, Pevas 5ta cdra, Iquitos, Loreto, Peru
| | - Adeilza Felipe Sampaio
- Programa de Pós- Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Campus Porto Velho Km 9,5 bairro Rural, Porto Velho, RO, 76.824-027, Brazil
| | - Elvis H Valderrama Sandoval
- Facultad de Biologia, Universidad Nacional de la Amazonia Peruana, Pevas 5ta cdra, Iquitos, Loreto, Peru
- Department of Biology, University of Missouri, St. Louis, MO, 63121, USA
| | | | - Aurora Levesley
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Georgia Pickavance
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Karina Melgaço
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
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Sanchez-Martinez P, Mencuccini M, García-Valdés R, Hammond WM, Serra-Diaz JM, Guo WY, Segovia RA, Dexter KG, Svenning JC, Allen C, Martínez-Vilalta J. Increased hydraulic risk in assemblages of woody plant species predicts spatial patterns of drought-induced mortality. Nat Ecol Evol 2023; 7:1620-1632. [PMID: 37640766 PMCID: PMC10555820 DOI: 10.1038/s41559-023-02180-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Accepted: 07/26/2023] [Indexed: 08/31/2023]
Abstract
Predicting drought-induced mortality (DIM) of woody plants remains a key research challenge under climate change. Here, we integrate information on the edaphoclimatic niches, phylogeny and hydraulic traits of species to model the hydraulic risk of woody plants globally. We combine these models with species distribution records to estimate the hydraulic risk faced by local woody plant species assemblages. Thus, we produce global maps of hydraulic risk and test for its relationship with observed DIM. Our results show that local assemblages modelled as having higher hydraulic risk present a higher probability of DIM. Metrics characterizing this hydraulic risk improve DIM predictions globally, relative to models accounting only for edaphoclimatic predictors or broad functional groupings. The methodology we present here allows mapping of functional trait distributions and elucidation of global macro-evolutionary and biogeographical patterns, improving our ability to predict potential global change impacts on vegetation.
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Affiliation(s)
- Pablo Sanchez-Martinez
- Universitat Autònoma de Barcelona, Cerdanyola del Valles, Barcelona, Spain.
- CREAF, Cerdanyola del Valles, Barcelona, Spain.
- School of GeoSciences, University of Edinburgh, Edinburgh, UK.
| | | | - Raúl García-Valdés
- CREAF, Cerdanyola del Valles, Barcelona, Spain
- Department of Biology and Geology, Physics and Inorganic Chemistry, Rey Juan Carlos University, Móstoles, Madrid, Spain
| | | | - Josep M Serra-Diaz
- Université de Lorraine, AgroParisTech, INRAE, Nancy, France
- Eversource Energy Center, University of Connecticut, Storrs, CT, USA
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA
| | - Wen-Yong Guo
- Research Center for Global Change and Complex Ecosystems & Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, P. R. China
- Department of Biology, Center for Ecological Dynamics in a Novel Biosphere (ECONOVO) & Center for Biodiversity Dynamics in a Changing World (BIOCHANGE), Aarhus University, Aarhus C, Denmark
| | - Ricardo A Segovia
- Institute of Ecology and Biodiversity (IEB), Santiago, Chile
- Departamento de Botánica, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción, Chile
| | - Kyle G Dexter
- School of GeoSciences, University of Edinburgh, Edinburgh, UK
- Royal Botanic Garden Edinburgh, Edinburgh, UK
| | - Jens-Christian Svenning
- Department of Biology, Center for Ecological Dynamics in a Novel Biosphere (ECONOVO) & Center for Biodiversity Dynamics in a Changing World (BIOCHANGE), Aarhus University, Aarhus C, Denmark
| | - Craig Allen
- Department of Geography and Environmental Studies, University of New Mexico, Albuquerque, NM, USA
| | - Jordi Martínez-Vilalta
- Universitat Autònoma de Barcelona, Cerdanyola del Valles, Barcelona, Spain
- CREAF, Cerdanyola del Valles, Barcelona, Spain
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6
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Gopal A, Bharti DK, Page N, Dexter KG, Krishnamani R, Kumar A, Joshi J. Range restricted old and young lineages show the southern Western Ghats to be both a museum and a cradle of diversity for woody plants. Proc Biol Sci 2023; 290:20222513. [PMID: 37122248 PMCID: PMC10130714 DOI: 10.1098/rspb.2022.2513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2023] Open
Abstract
The Western Ghats (WG) mountain chain is a global biodiversity hotspot with high diversity and endemicity of woody plants. The latitudinal breadth of the WG offers an opportunity to determine the evolutionary drivers of latitudinal diversity patterns. We examined the spatial patterns of evolutionary diversity using complementary phylogenetic diversity and endemism measures. To examine if different regions of the WG serve as a museum or cradle of evolutionary diversity, we examined the distribution of 470 species based on distribution modelling and occurrence locations across the entire region. In accordance with the expectation, we found that the southern WG is both a museum and cradle of woody plant evolutionary diversity, as a higher proportion of both old and young evolutionary lineages are restricted to the southern WG. The diversity gradient is likely driven by high geo-climatic stability in the south and phylogenetic niche conservatism for moist and aseasonal sites. This is corroborated by persistent lineage nestedness at almost all evolutionary depths (10-135 million years), and a strong correlation of evolutionary diversity with drought seasonality, precipitation and topographic heterogeneity. Our results highlight the global value of the WG, demonstrating, in particular, the importance of protecting the southern WG-an engine of plant diversification and persistence.
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Affiliation(s)
- Abhishek Gopal
- CSIR-Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| | - D K Bharti
- CSIR-Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad, India
| | | | - Kyle G Dexter
- School of GeoSciences, University of Edinburgh, Edinburgh, UK
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, Edinburgh, UK
| | | | - Ajith Kumar
- Centre for Wildlife Studies, Bangalore, Karnataka, India
| | - Jahnavi Joshi
- CSIR-Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
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7
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Ringelberg JJ, Koenen EJ, Sauter B, Aebli A, Rando JG, Iganci JR, de Queiroz LP, Murphy DJ, Gaudeul M, Bruneau A, Luckow M, Lewis GP, Miller JT, Simon MF, Jordão LS, Morales M, Bailey CD, Nageswara-Rao M, Nicholls JA, Loiseau O, Pennington RT, Dexter KG, Zimmermann NE, Hughes CE. Precipitation is the main axis of tropical plant phylogenetic turnover across space and time. Sci Adv 2023; 9:eade4954. [PMID: 36800419 PMCID: PMC10957106 DOI: 10.1126/sciadv.ade4954] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Accepted: 01/17/2023] [Indexed: 06/18/2023]
Abstract
Early natural historians-Comte de Buffon, von Humboldt, and De Candolle-established environment and geography as two principal axes determining the distribution of groups of organisms, laying the foundations for biogeography over the subsequent 200 years, yet the relative importance of these two axes remains unresolved. Leveraging phylogenomic and global species distribution data for Mimosoid legumes, a pantropical plant clade of c. 3500 species, we show that the water availability gradient from deserts to rain forests dictates turnover of lineages within continents across the tropics. We demonstrate that 95% of speciation occurs within a precipitation niche, showing profound phylogenetic niche conservatism, and that lineage turnover boundaries coincide with isohyets of precipitation. We reveal similar patterns on different continents, implying that evolution and dispersal follow universal processes.
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Affiliation(s)
- Jens J. Ringelberg
- Department of Systematic and Evolutionary Botany, University of Zurich, Zollikerstrasse 107, CH 8008 Zurich, Switzerland
| | - Erik J. M. Koenen
- Department of Systematic and Evolutionary Botany, University of Zurich, Zollikerstrasse 107, CH 8008 Zurich, Switzerland
| | - Benjamin Sauter
- Department of Systematic and Evolutionary Botany, University of Zurich, Zollikerstrasse 107, CH 8008 Zurich, Switzerland
| | - Anahita Aebli
- Department of Systematic and Evolutionary Botany, University of Zurich, Zollikerstrasse 107, CH 8008 Zurich, Switzerland
| | - Juliana G. Rando
- Programa de Pós Graduação em Ciências Ambientais, Centro das Ciências Biológicas e da Saúde, Universidade Federal do Oeste da Bahia, Rua Prof. José Seabra de Lemos, 316, Bairro Recanto dos Pássaros, 47808-021 Barreiras-BA, Brazil
| | - João R. Iganci
- Instituto de Biologia, Universidade Federal de Pelotas, Campus Universitário Capão do Leão, Travessa André Dreyfus s/n, 96010-900 Capão do Leão-RS, Brazil
- Programa de Pós-Graduação em Botânica, Universidade Federal do Rio Grande do Sul, Avenida Bento Gonçalves, 9500, 91501-970 Porto Alegre-RS, Brazil
| | - Luciano P. de Queiroz
- Departamento Ciências Biológicas, Universidade Estadual de Feira de Santana, Avenida Transnordestina s/n, Novo Horizonte, 44036-900 Feira de Santana-BA, Brazil
| | - Daniel J. Murphy
- Royal Botanic Gardens Victoria, Birdwood Ave., Melbourne, VIC 3004, Australia
- School of Biological, Earth and Environmental Sciences, Faculty of Science, University of New South Wales, Sydney, NSW 2052, Australia
- School of BioSciences, University of Melbourne, Melbourne, VIC 3010, Australia
| | - Myriam Gaudeul
- Institut de Systématique, Evolution, Biodiversité (ISYEB), MNHN-CNRS-SU-EPHE-UA, 57 rue Cuvier, CP 39, 75231 Paris, Cedex 05, France
| | - Anne Bruneau
- Institut de Recherche en Biologie Végétale and Département de Sciences Biologiques, Université de Montréal, 4101 Sherbrooke St E, Montreal, QC H1X 2B2, Canada
| | - Melissa Luckow
- School of Integrative Plant Science, Plant Biology Section, Cornell University, 215 Garden Avenue, Roberts Hall 260, Ithaca, NY 14853, USA
| | - Gwilym P. Lewis
- Accelerated Taxonomy Department, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK
| | - Joseph T. Miller
- Global Biodiversity Information Facility, Universitetsparken 15, DK-2100 Copenhagen Ø, Denmark
| | - Marcelo F. Simon
- Embrapa Recursos Genéticos e Biotecnologia, 70770-901 Brasília-DF, Brazil
| | - Lucas S. B. Jordão
- Programa de Pós-Graduação em Botânica, Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, 22460-030 Rua Pacheco Leão-RJ, Brazil
| | - Matías Morales
- Instituto de Recursos Biológicos, CIRN-CNIA, Instituto Nacional de Tecnología Agropecuaria (INTA), Hurlingham 1686, Buenos Aires, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), C1425FQB Ciudad Autónoma de Buenos Aires, Argentina
- Facultad de Agronomía y Ciencias Agroalimentarias, Universidad de Morón, B1708JPD Morón, Buenos Aires, Argentina
| | - C. Donovan Bailey
- Department of Biology, New Mexico State University, Las Cruces, NM 88001, USA
| | - Madhugiri Nageswara-Rao
- United States Department of Agriculture - Agricultural Research Service, Subtropical Horticulture Research Station, 13601 Old Cutler Road, Miami, FL 33158, USA
| | - James A. Nicholls
- Australian National Insect Collection, CSIRO, Clunies Ross Street, Acton, ACT 2601, Australia
| | - Oriane Loiseau
- School of Geosciences, University of Edinburgh, Old College, South Bridge, Edinburgh EH8 9YL, UK
| | - R. Toby Pennington
- Department of Geography, University of Exeter, Laver Building, North Park Road, Exeter EX4 4QE, UK
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, Edinburgh EH3 5LR, UK
| | - Kyle G. Dexter
- School of Geosciences, University of Edinburgh, Old College, South Bridge, Edinburgh EH8 9YL, UK
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, Edinburgh EH3 5LR, UK
| | - Niklaus E. Zimmermann
- Department of Environmental System Science, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Colin E. Hughes
- Department of Systematic and Evolutionary Botany, University of Zurich, Zollikerstrasse 107, CH 8008 Zurich, Switzerland
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8
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Forrister DL, Endara MJ, Soule AJ, Younkin GC, Mills AG, Lokvam J, Dexter KG, Pennington RT, Kidner CA, Nicholls JA, Loiseau O, Kursar TA, Coley PD. Diversity and divergence: evolution of secondary metabolism in the tropical tree genus Inga. New Phytol 2023; 237:631-642. [PMID: 36263711 DOI: 10.1111/nph.18554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Accepted: 09/29/2022] [Indexed: 06/16/2023]
Abstract
Plants are widely recognized as chemical factories, with each species producing dozens to hundreds of unique secondary metabolites. These compounds shape the interactions between plants and their natural enemies. We explore the evolutionary patterns and processes by which plants generate chemical diversity, from evolving novel compounds to unique chemical profiles. We characterized the chemical profile of one-third of the species of tropical rainforest trees in the genus Inga (c. 100, Fabaceae) using ultraperformance liquid chromatography-mass spectrometry-based metabolomics and applied phylogenetic comparative methods to understand the mode of chemical evolution. We show: each Inga species contain structurally unrelated compounds and high levels of phytochemical diversity; closely related species have divergent chemical profiles, with individual compounds, compound classes, and chemical profiles showing little-to-no phylogenetic signal; at the evolutionary time scale, a species' chemical profile shows a signature of divergent adaptation. At the ecological time scale, sympatric species were the most divergent, implying it is also advantageous to maintain a unique chemical profile from community members; finally, we integrate these patterns with a model for how chemical diversity evolves. Taken together, these results show that phytochemical diversity and divergence are fundamental to the ecology and evolution of plants.
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Affiliation(s)
- Dale L Forrister
- School of Biological Sciences, University of Utah, Aline W. Skaggs Biology Building, 257 S 1400 E, Salt Lake City, UT, 84112-0840, USA
| | - María-José Endara
- School of Biological Sciences, University of Utah, Aline W. Skaggs Biology Building, 257 S 1400 E, Salt Lake City, UT, 84112-0840, USA
- Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud-BIOMAS - Universidad de las Américas, 170513, Quito, Ecuador
| | - Abrianna J Soule
- School of Biological Sciences, University of Utah, Aline W. Skaggs Biology Building, 257 S 1400 E, Salt Lake City, UT, 84112-0840, USA
| | - Gordon C Younkin
- Boyce Thompson Institute, Ithaca, NY, 14853, USA
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA
| | - Anthony G Mills
- School of Biological Sciences, University of Utah, Aline W. Skaggs Biology Building, 257 S 1400 E, Salt Lake City, UT, 84112-0840, USA
| | - John Lokvam
- School of Biological Sciences, University of Utah, Aline W. Skaggs Biology Building, 257 S 1400 E, Salt Lake City, UT, 84112-0840, USA
| | - Kyle G Dexter
- School of Geosciences, University of Edinburgh, Old College, South Bridge, Edinburgh, EH8 9YL, UK
| | - R Toby Pennington
- Department of Geography, University of Exeter, Laver Building, North Park Road, Exeter, EX4 4QE, UK
| | - Catherine A Kidner
- School of Biological Sciences, University of Edinburgh, King's Buildings, Mayfield Road, Edinburgh, EH9 3JW, UK
- Royal Botanic Gardens Edinburgh, 20a Inverleith Row, Edinburgh, EH3 5LR, UK
| | - James A Nicholls
- The Commonwealth Scientific and Industrial Research Organisation (CSIRO), Australian National Insect Collection (ANIC), Building 101, Clunies Ross Street, Black Mountain, ACT, 2601, Australia
| | - Oriane Loiseau
- School of Geosciences, University of Edinburgh, Old College, South Bridge, Edinburgh, EH8 9YL, UK
| | - Thomas A Kursar
- School of Biological Sciences, University of Utah, Aline W. Skaggs Biology Building, 257 S 1400 E, Salt Lake City, UT, 84112-0840, USA
| | - Phyllis D Coley
- School of Biological Sciences, University of Utah, Aline W. Skaggs Biology Building, 257 S 1400 E, Salt Lake City, UT, 84112-0840, USA
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9
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Gorel AP, Hardy OJ, Dauby G, Dexter KG, Segovia RA, Steppe K, Fayolle A. Climatic niche lability but growth form conservatism in the African woody flora. Ecol Lett 2022; 25:1164-1176. [PMID: 35229970 DOI: 10.1111/ele.13985] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 12/16/2021] [Accepted: 02/03/2022] [Indexed: 11/30/2022]
Abstract
Climatic niche evolution during the diversification of tropical plants has received little attention in Africa. To address this, we characterised the climatic niche of >4000 tropical African woody species, distinguishing two broad bioclimatic groups (forest vs. savanna) and six subgroups. We quantified niche conservatism versus lability at the genus level and for higher clades, using a molecular phylogeny of >800 genera. Although niche stasis at speciation is prevalent, numerous clades individually cover vast climatic spaces suggesting a general ease in transcending ecological limits, especially across bioclimatic subgroups. The forest biome was the main source of diversity, providing many lineages to savanna, but reverse shifts also occurred. We identified clades that diversified in savanna after shifts from forest. The forest-savanna transition was not consistently associated with a growth form change, though we found evolutionarily labile clades whose presence in forest or savanna is associated respectively with climbing or shrubby species diversification.
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Affiliation(s)
- Anaïs-Pasiphaé Gorel
- Laboratory of Plant Ecology, Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Olivier J Hardy
- Evolutionary Biology and Ecology, Faculté Des Sciences, Université Libre de Bruxelles, Brussels, Belgium
| | - Gilles Dauby
- AMAP, Univ. Montpellier, IRD, CNRS, CIRAD, INRAE, Montpellier University, Montpellier, France
| | - Kyle G Dexter
- Tropical School of GeoSciences, University of Edinburgh, Edinburgh, UK.,Tropical Diversity Section, Royal Botanic Garden Edinburgh, Edinburgh, UK
| | - Ricardo A Segovia
- Instituto de Ecologia y Biodiversidad (IEB), Santiago, Chile.,Facultad de Ciencias, Instituto de Ciencias Ambientales y Evolutivas, Kat, Valdivia, Chile
| | - Kathy Steppe
- Laboratory of Plant Ecology, Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Adeline Fayolle
- Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
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10
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Godlee JL, Ryan CM, Bauman D, Bowers SJ, Carreiras JMB, Chisingui AV, Cromsigt JPGM, Druce DJ, Finckh M, Gonçalves FM, Holdo RM, Makungwa S, McNicol IM, Mitchard ETA, Muchawona A, Revermann R, Ribeiro NS, Siampale A, Syampungani S, Tchamba JJ, Tripathi HG, Wallenfang J, Te Beest M, Williams M, Dexter KG. Structural diversity and tree density drives variation in the biodiversity-ecosystem function relationship of woodlands and savannas. New Phytol 2021; 232:579-594. [PMID: 34292602 DOI: 10.1111/nph.17639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Accepted: 07/01/2021] [Indexed: 06/13/2023]
Abstract
Positive biodiversity-ecosystem function relationships (BEFRs) have been widely documented, but it is unclear if BEFRs should be expected in disturbance-driven systems. Disturbance may limit competition and niche differentiation, which are frequently posited to underlie BEFRs. We provide the first exploration of the relationship between tree species diversity and biomass, one measure of ecosystem function, across southern African woodlands and savannas, an ecological system rife with disturbance from fire, herbivores and humans. We used > 1000 vegetation plots distributed across 10 southern African countries and structural equation modelling to determine the relationship between tree species diversity and above-ground woody biomass, accounting for interacting effects of resource availability, disturbance by fire, tree stem density and vegetation type. We found positive effects of tree species diversity on above-ground biomass, operating via increased structural diversity. The observed BEFR was highly dependent on organismal density, with a minimum threshold of c. 180 mature stems ha-1 . We found that water availability mainly affects biomass indirectly, via increasing species diversity. The study underlines the close association between tree diversity, ecosystem structure, environment and function in highly disturbed savannas and woodlands. We suggest that tree diversity is an under-appreciated determinant of wooded ecosystem structure and function.
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Affiliation(s)
- John L Godlee
- School of GeoSciences, University of Edinburgh, Edinburgh, EH9 3FF, UK
| | - Casey M Ryan
- School of GeoSciences, University of Edinburgh, Edinburgh, EH9 3FF, UK
| | - David Bauman
- Environmental Change Institute, School of Geography and the Environment, University of Oxford, Oxford, OX1 3QY, UK
- Laboratoire d'Écologie Végétale et Biogéochimie, CP 244, Université Libre de Bruxelles, Brussels, B-1050, Belgium
| | - Samuel J Bowers
- School of GeoSciences, University of Edinburgh, Edinburgh, EH9 3FF, UK
| | - Joao M B Carreiras
- National Centre for Earth Observation (NCEO), University of Sheffield, Hicks Building, Hounsfield Road, Sheffield, S3 7RH, UK
| | | | - Joris P G M Cromsigt
- Department of Wildlife, Fish and Environmental Studies, Swedish University of Agricultural Sciences, Umeå, SE-907 36, Sweden
- Department of Zoology, Centre for African Conservation Ecology, Nelson Mandela University, Port Elizabeth, 6031, South Africa
- Copernicus Institute of Sustainable Development, Utrecht University, Utrecht, 3584CS, the Netherlands
| | - Dave J Druce
- Ecological Advice, Ezemvelo KZN Wildlife, Hluhluwe-iMfolozi Park, 3202, South Africa
- School of Life Sciences, University of KwaZulu-Natal, Pietermaritzburg, 3209, South Africa
| | - Manfred Finckh
- Biodiversity, Evolution and Ecology of Plants, Institute of Plant Sciences and Microbiology, University of Hamburg, Ohnhorststr. 18, Hamburg, 22609, Germany
| | | | - Ricardo M Holdo
- Odum School of Ecology, University of Georgia, 140 E. Green St., Athens, GA, 30602, USA
| | - Steve Makungwa
- Lilongwe University of Agriculture and Natural Resources (LUANAR), Lilongwe, Malawi
| | - Iain M McNicol
- School of GeoSciences, University of Edinburgh, Edinburgh, EH9 3FF, UK
| | | | | | - Rasmus Revermann
- Biodiversity, Evolution and Ecology of Plants, Institute of Plant Sciences and Microbiology, University of Hamburg, Ohnhorststr. 18, Hamburg, 22609, Germany
- Faculty of Natural Resources and Spatial Sciences, Namibia University of Science and Technology, Windhoek, 10005, Namibia
| | - Natasha Sofia Ribeiro
- Department of Forest Engineering, Faculty of Agronomy and Forest Engineering, Universidade Eduardo Mondlane, Av. Julius Nyerere, 3453, Campus Universitario, Maputo, Mozambique
| | - Abel Siampale
- Ministry of Lands and Natural Resources, Cairo Road, Lusaka, Zambia
| | | | - José João Tchamba
- Herbarium of Lubango, ISCED Huíla, Sarmento Rodrigues Str. No. 2, CP 230, Lubango, Angola
| | - Hemant G Tripathi
- Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Johannes Wallenfang
- Biodiversity, Evolution and Ecology of Plants, Institute of Plant Sciences and Microbiology, University of Hamburg, Ohnhorststr. 18, Hamburg, 22609, Germany
| | - Mariska Te Beest
- Copernicus Institute of Sustainable Development, Utrecht University, Utrecht, 3508, the Netherlands
- Centre for African Conservation Ecology, Nelson Mandela University, Port Elizabeth, 6031, South Africa
- South African Environmental Observation Network, Grasslands-Forests-Wetlands Node, Montrose, 3201, South Africa
| | - Mathew Williams
- School of GeoSciences, University of Edinburgh, Edinburgh, EH9 3FF, UK
| | - Kyle G Dexter
- School of GeoSciences, University of Edinburgh, Edinburgh, EH9 3FF, UK
- Royal Botanic Garden Edinburgh, Edinburgh, EH3 5LR, UK
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11
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Griffiths AR, Silman MR, Farfan-Rios W, Feeley KJ, Cabrera KG, Meir P, Salinas N, Segovia RA, Dexter KG. Evolutionary Diversity Peaks at Mid-Elevations Along an Amazon-to-Andes Elevation Gradient. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.680041] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
Elevation gradients present enigmatic diversity patterns, with trends often dependent on the dimension of diversity considered. However, focus is often on patterns of taxonomic diversity and interactions between diversity gradients and evolutionary factors, such as lineage age, are poorly understood. We combine forest census data with a genus level phylogeny representing tree ferns, gymnosperms, angiosperms, and an evolutionary depth of 382 million years, to investigate taxonomic and evolutionary diversity patterns across a long tropical montane forest elevation gradient on the Amazonian flank of the Peruvian Andes. We find that evolutionary diversity peaks at mid-elevations and contrasts with taxonomic richness, which is invariant from low to mid-elevation, but then decreases with elevation. We suggest that this trend interacts with variation in the evolutionary ages of lineages across elevation, with contrasting distribution trends between younger and older lineages. For example, while 53% of young lineages (originated by 10 million years ago) occur only below ∼1,750 m asl, just 13% of old lineages (originated by 110 million years ago) are restricted to below ∼1,750 m asl. Overall our results support an Environmental Crossroads hypothesis, whereby a mid-gradient mingling of distinct floras creates an evolutionary diversity in mid-elevation Andean forests that rivals that of the Amazonian lowlands.
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12
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Pezzini FF, Dexter KG, De Carvalho-Sobrinho JG, Kidner CA, Nicholls JA, De Queiroz LP, Pennington RT. Phylogeny and biogeography of Ceiba Mill. (Malvaceae, Bombacoideae). Frontiers of Biogeography 2021. [DOI: 10.21425/f5fbg49226] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
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13
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Draper FC, Costa FRC, Arellano G, Phillips OL, Duque A, Macía MJ, Ter Steege H, Asner GP, Berenguer E, Schietti J, Socolar JB, de Souza FC, Dexter KG, Jørgensen PM, Tello JS, Magnusson WE, Baker TR, Castilho CV, Monteagudo-Mendoza A, Fine PVA, Ruokolainen K, Coronado ENH, Aymard G, Dávila N, Sáenz MS, Paredes MAR, Engel J, Fortunel C, Paine CET, Goret JY, Dourdain A, Petronelli P, Allie E, Andino JEG, Brienen RJW, Pérez LC, Manzatto ÂG, Zambrana NYP, Molino JF, Sabatier D, Chave J, Fauset S, Villacorta RG, Réjou-Méchain M, Berry PE, Melgaço K, Feldpausch TR, Sandoval EV, Martinez RV, Mesones I, Junqueira AB, Roucoux KH, de Toledo JJ, Andrade AC, Camargo JL, Del Aguila Pasquel J, Santana FD, Laurance WF, Laurance SG, Lovejoy TE, Comiskey JA, Galbraith DR, Kalamandeen M, Aguilar GEN, Arenas JV, Guerra CAA, Flores M, Llampazo GF, Montenegro LAT, Gomez RZ, Pansonato MP, Moscoso VC, Vleminckx J, Barrantes OJV, Duivenvoorden JF, de Sousa SA, Arroyo L, Perdiz RO, Cravo JS, Marimon BS, Junior BHM, Carvalho FA, Damasco G, Disney M, Vital MS, Diaz PRS, Vicentini A, Nascimento H, Higuchi N, Van Andel T, Malhi Y, Ribeiro SC, Terborgh JW, Thomas RS, Dallmeier F, Prieto A, Hilário RR, Salomão RP, Silva RDC, Casas LF, Vieira ICG, Araujo-Murakami A, Arevalo FR, Ramírez-Angulo H, Torre EV, Peñuela MC, Killeen TJ, Pardo G, Jimenez-Rojas E, Castro W, Cabrera DG, Pipoly J, de Sousa TR, Silvera M, Vos V, Neill D, Vargas PN, Vela DM, Aragão LEOC, Umetsu RK, Sierra R, Wang O, Young KR, Prestes NCCS, Massi KG, Huaymacari JR, Gutierrez GAP, Aldana AM, Alexiades MN, Baccaro F, Céron C, Muelbert AE, Rios JMG, Lima AS, Lloyd JL, Pitman NCA, Gamarra LV, Oroche CJC, Fuentes AF, Palacios W, Patiño S, Torres-Lezama A, Baraloto C. Amazon tree dominance across forest strata. Nat Ecol Evol 2021; 5:757-767. [PMID: 33795854 DOI: 10.1038/s41559-021-01418-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Accepted: 02/18/2021] [Indexed: 02/01/2023]
Abstract
The forests of Amazonia are among the most biodiverse plant communities on Earth. Given the immediate threats posed by climate and land-use change, an improved understanding of how this extraordinary biodiversity is spatially organized is urgently required to develop effective conservation strategies. Most Amazonian tree species are extremely rare but a few are common across the region. Indeed, just 227 'hyperdominant' species account for >50% of all individuals >10 cm diameter at 1.3 m in height. Yet, the degree to which the phenomenon of hyperdominance is sensitive to tree size, the extent to which the composition of dominant species changes with size class and how evolutionary history constrains tree hyperdominance, all remain unknown. Here, we use a large floristic dataset to show that, while hyperdominance is a universal phenomenon across forest strata, different species dominate the forest understory, midstory and canopy. We further find that, although species belonging to a range of phylogenetically dispersed lineages have become hyperdominant in small size classes, hyperdominants in large size classes are restricted to a few lineages. Our results demonstrate that it is essential to consider all forest strata to understand regional patterns of dominance and composition in Amazonia. More generally, through the lens of 654 hyperdominant species, we outline a tractable pathway for understanding the functioning of half of Amazonian forests across vertical strata and geographical locations.
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Affiliation(s)
- Frederick C Draper
- Institute of Environment, Department of Biological Sciences, Florida International University, Miami, FL, USA. .,School of Geography, University of Leeds, Leeds, UK. .,Center for Global Discovery and Conservation Science, Arizona State University, Tempe, AZ, USA.
| | - Flavia R C Costa
- Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Gabriel Arellano
- Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA
| | | | - Alvaro Duque
- Departamento de Ciencias Forestales, Universidad Nacional de Colombia, Medellín, Colombia
| | - Manuel J Macía
- Departamento de Biología, Universidad Autónoma de Madrid, Madrid, Spain.,Centro de Investigación en Biodiversidad y Cambio Global (CIBC-UAM), Universidad Autónoma de Madrid, Madrid, Spain
| | - Hans Ter Steege
- Naturalis Biodiversity Center, Leiden, The Netherlands.,Systems Ecology, Vrije Universiteit, Amsterdam, The Netherlands
| | - Gregory P Asner
- Center for Global Discovery and Conservation Science, Arizona State University, Tempe, AZ, USA
| | - Erika Berenguer
- Lancaster Environment Centre, Lancaster University, Lancaster, UK.,Environmental Change Institute, University of Oxford, Oxford, UK
| | - Juliana Schietti
- Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - Jacob B Socolar
- Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences, Ås, Norway
| | | | - Kyle G Dexter
- School of Geosciences, University of Edinburgh, Edinburgh, UK
| | | | | | | | | | | | | | - Paul V A Fine
- Department of Intergrative Biology, University of California Berkeley, Berkeley, CA, USA
| | | | | | - Gerardo Aymard
- UNELLEZ-Guanare, Programa de Ciencias del Agro y el Mar, Herbario Universitario (PORT), Mesa de Cavacas, Venezuela.,Compensation International Progress S. A.-Ciprogress Greenlife, Bogotá, Colombia
| | - Nállarett Dávila
- Instituto de Investigaciones de la Amazonía Peruana, Iquitos, Peru
| | - Mauricio Sánchez Sáenz
- Departamento de Ciencias Forestales, Universidad Nacional de Colombia, Medellín, Colombia
| | | | - Julien Engel
- AMAP, Université de Montpellier, CIRAD, CNRS, INRAE, IRD, Montpellier, France
| | - Claire Fortunel
- AMAP, Université de Montpellier, CIRAD, CNRS, INRAE, IRD, Montpellier, France
| | - C E Timothy Paine
- Environmental and Rural Science, University of New England, Armidale, New South Wales, Australia
| | - Jean-Yves Goret
- INRA, UMR EcoFoG, AgroParisTech, CNRS, CIRAD, Université des Antilles, Université de Guyane, Kourou, French Guiana
| | | | | | - Elodie Allie
- INRA, UMR EcoFoG, AgroParisTech, CNRS, CIRAD, Université des Antilles, Université de Guyane, Kourou, French Guiana
| | | | | | | | - Ângelo G Manzatto
- Departamento de Biologia, Universidade Federal de Rondônia, Porto Velho, Brazil
| | | | | | - Daniel Sabatier
- AMAP, Université de Montpellier, CIRAD, CNRS, INRAE, IRD, Montpellier, France
| | - Jerôme Chave
- Laboratoire Evolution et Diversité Biologique (EDB) CNRS/UPS, Toulouse, France
| | - Sophie Fauset
- School of Geography, Earth and Environmental Sciences, University of Plymouth, Plymouth, UK
| | | | | | - Paul E Berry
- Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA
| | - Karina Melgaço
- Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | | | | | - Italo Mesones
- Department of Intergrative Biology, University of California Berkeley, Berkeley, CA, USA
| | - André B Junqueira
- Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil.,Institut de Ciència i Tecnologia Ambientals, Universitat Autònoma de Barcelona, Barcelona, Spain
| | - Katherine H Roucoux
- School of Geography & Sustainable Development, University of St Andrews, St Andrews, UK
| | - José J de Toledo
- Department of Environment and Development, Federal University of Amapá, Macapa, Brazil
| | - Ana C Andrade
- Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | | | - Flávia D Santana
- Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | - William F Laurance
- Centre for Tropical Environmental and Sustainability Science (TESS) and College of Marine and Environmental Sciences, James Cook University, Cairns, Queensland, Australia
| | - Susan G Laurance
- Centre for Tropical Environmental and Sustainability Science (TESS) and College of Marine and Environmental Sciences, James Cook University, Cairns, Queensland, Australia
| | - Thomas E Lovejoy
- Department of Environmental Science and Policy, George Mason University, Fairfax, VA, USA
| | - James A Comiskey
- Inventory and Monitoring Program, National Park Service, Fredericksburg, VA, USA.,Smithsonian Institution, Washington DC, USA
| | | | - Michelle Kalamandeen
- Department of Plant Sciences, University of Cambridge, Cambridge, UK.,Living with Lakes Centre, Laurentian University, Greater Sudbury, Ontario, Canada
| | | | - Jim Vega Arenas
- Facultad de Ciencias Biológicas, Universidad Nacional de la Amazonía Peruana, Iquito, Peru
| | | | - Manuel Flores
- Facultad de Ciencias Biológicas, Universidad Nacional de la Amazonía Peruana, Iquito, Peru
| | | | | | | | | | - Victor Chama Moscoso
- Universidad Nacional de San Antonio Abad del Cusco, Cusco, Peru.,Estación Biológica del Jardín Botánico de Missouri, Oxapampa, Peru
| | - Jason Vleminckx
- Center for Global Discovery and Conservation Science, Arizona State University, Tempe, AZ, USA
| | | | - Joost F Duivenvoorden
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | | | - Luzmila Arroyo
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Bolivia
| | - Ricardo O Perdiz
- Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | - Beatriz S Marimon
- Faculdade de Ciências Agrárias, Biológicas e Sociais Aplicadas, Universidad do Estado de Mato Grosso, Nova Xavantina, Brazil
| | - Ben Hur Marimon Junior
- Faculdade de Ciências Agrárias, Biológicas e Sociais Aplicadas, Universidad do Estado de Mato Grosso, Nova Xavantina, Brazil
| | | | - Gabriel Damasco
- Department of Ecology, Evolution and Behaviour, University of Minnesota, Minneapolis, MN, USA
| | - Mathias Disney
- Department of Geography, University College London, London, UK
| | - Marcos Salgado Vital
- Centro de Estudos da Biodiversidade, Universidade Federal de Roraima, Boa Vista, Brazil
| | - Pablo R Stevenson Diaz
- Departamento de Ciencias Biológicas, Universidad de Los Andes (Colombia), Bogotá, Colombia
| | | | | | - Niro Higuchi
- Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil
| | | | - Yadvinder Malhi
- Environmental Change Institute, University of Oxford, Oxford, UK
| | - Sabina Cerruto Ribeiro
- Centro de Ciências Biológicas e da Natureza, Universidade Federal do Acre, Rio Branco, Brazil
| | - John W Terborgh
- Nicholas School of the Environment, Duke University, Durham, NC, USA
| | - Raquel S Thomas
- Iwokrama International Centre for Rainforest Conservation and Development, Georgetown, Guyana
| | - Francisco Dallmeier
- Smithsonian's National Zoo & Conservation Biology Institute, Washington DC, USA
| | - Adriana Prieto
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Bogotá, Colombia
| | - Renato R Hilário
- Department of Environment and Development, Federal University of Amapá, Macapa, Brazil
| | - Rafael P Salomão
- Universidade Federal Rural da Amazônia-UFRA/CAPES, Belém, Brazil.,Museu Paraense Emílio Goeldi, Belém, Brasil
| | | | - Luisa F Casas
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Fundación Natura Colombia, Universidad de Los Andes, Bogotá, Colombia
| | | | - Alejandro Araujo-Murakami
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Bolivia
| | | | - Hirma Ramírez-Angulo
- Institute of Research for Forestry Development, Universidad de los Andes, Merida, Venezuela
| | - Emilio Vilanova Torre
- Institute of Research for Forestry Development, Universidad de los Andes, Merida, Venezuela.,School of Environmental and Forest Sciences (SEFS), University of Washington, Seattle, WA, USA
| | | | | | - Guido Pardo
- Universidad Autónoma del Beni, Riberalta, Bolivia
| | - Eliana Jimenez-Rojas
- Instituto Amazónico de Investigaciones (IMANI), Universidad Nacional de Colombia, Sede Amazonia, Brazil
| | - Wenderson Castro
- Centro de Ciências Biológicas e da Natureza, Universidade Federal do Acre, Rio Branco, Brazil
| | | | - John Pipoly
- Broward County Parks and Recreation, Miami, FL, USA.,Biological Sciences, Florida Atlantic University-Davie, Miami, FL, USA
| | | | - Marcos Silvera
- Museu Universitário, Universidade Federal do Acre, Rio Branco, Brazil
| | - Vincent Vos
- Universidad Autónoma del Beni, Riberalta, Bolivia
| | - David Neill
- Facultad de Ingeniería Ambiental, Universidad Estatal Amazónica, Puyo, Ecuador
| | | | - Dilys M Vela
- Department of Biology, Washington University in St Louis, St Louis, MO, USA
| | - Luiz E O C Aragão
- National Institute for Space Research (INPE), São José dos Campos, Brazil
| | - Ricardo Keichi Umetsu
- Faculdade de Ciências Agrárias, Biológicas e Sociais Aplicadas, Universidad do Estado de Mato Grosso, Nova Xavantina, Brazil
| | | | - Ophelia Wang
- School of Earth Sciences and Environmental Sustainability, Northern Arizona University, Flagstaff, AZ, USA
| | - Kenneth R Young
- Department of Geography and the Environment, University of Texas at Austin, Austin, TX, USA
| | - Nayane C C S Prestes
- Faculdade de Ciências Agrárias, Biológicas e Sociais Aplicadas, Universidad do Estado de Mato Grosso, Nova Xavantina, Brazil
| | - Klécia G Massi
- Instituto de Ciência e Tecnologia, São Paulo State University (UNESP), São José dos Campos, Brazil
| | | | - Germaine A Parada Gutierrez
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Santa Cruz, Bolivia
| | - Ana M Aldana
- Departamento de Ciencias Biológicas, Universidad de Los Andes (Colombia), Bogotá, Colombia
| | - Miguel N Alexiades
- School of Anthropology and Conservation, University of Kent, Canterbury, UK
| | | | - Carlos Céron
- Herbario Alfredo Paredes (QAP), Universidad Central del Ecuador, Quito, Ecuador
| | | | | | | | - Jonathan L Lloyd
- Department of Life Sciences, Imperial College London, London, UK
| | | | | | | | - Alfredo F Fuentes
- Instituto de Ecología, Herbario Nacional de Bolivia, La Paz, Bolivia
| | - Walter Palacios
- Universidad Tecnica del Norte, Herbario Nacional del Ecuador, Quito, Ecuador
| | - Sandra Patiño
- Research Institute Alexander von Humboldt, Bogotá, Colombia
| | - Armando Torres-Lezama
- Institute of Research for Forestry Development, Universidad de los Andes, Merida, Venezuela
| | - Christopher Baraloto
- Institute of Environment, Department of Biological Sciences, Florida International University, Miami, FL, USA
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14
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Loiseau O, Mota Machado T, Paris M, Koubínová D, Dexter KG, Versieux LM, Lexer C, Salamin N. Genome Skimming Reveals Widespread Hybridization in a Neotropical Flowering Plant Radiation. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.668281] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
The tropics hold at least an order of magnitude greater plant diversity than the temperate zone, yet the reasons for this difference are still subject to debate. Much of tropical plant diversity is in highly speciose genera and understanding the drivers of such high species richness will help solve the tropical diversity enigma. Hybridization has recently been shown to underlie many adaptive radiations, but its role in the evolution of speciose tropical plant genera has received little attention. Here, we address this topic in the hyperdiverse Bromeliaceae genus Vriesea using genome skimming data covering the three genomic compartments. We find evidence for hybridization in ca. 11% of the species in our dataset, both within the genus and between Vriesea and other genera, which is commensurate with hybridization underlying the hyperdiversity of Vriesea, and potentially other genera in Tillandsioideae. While additional genomic research will be needed to further clarify the contribution of hybridization to the rapid diversification of Vriesea, our study provides an important first data point suggesting its importance to the evolution of tropical plant diversity.
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15
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Tripp EA, Dexter KG, Stone HB. Reproductive character displacement and potential underlying drivers in a species-rich and florally diverse lineage of tropical angiosperms ( Ruellia; Acanthaceae). Ecol Evol 2021; 11:4719-4730. [PMID: 33976842 PMCID: PMC8093712 DOI: 10.1002/ece3.7371] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Revised: 12/05/2020] [Accepted: 12/10/2020] [Indexed: 11/08/2022] Open
Abstract
Reproductive character displacement is a pattern whereby sympatric lineages diverge more in reproductive character morphology than allopatric lineages. This pattern has been observed in many plant species, but comparably few have sought to disentangle underlying mechanisms. Here, in a diverse lineage of Neotropical plants (Ruellia; Acanthaceae), we present evidence of reproductive character displacement in a macroevolutionary framework (i.e., among species) and document mechanistic underpinnings. In a series of interspecific hand pollinations in a controlled glasshouse environment, we found that crosses between species that differed more in overall flower size, particularly in style length, were significantly less likely to produce viable seeds. Further, species pairs that failed to set seed were more likely to have sympatric distributions in nature. Competition for pollinators and reinforcement to avoid costly interspecific mating could both result in these patterns and are not mutually exclusive processes. Our results add to growing evidence that reproductive character displacement contributes to exceptional floral diversity of angiosperms.
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Affiliation(s)
- Erin A. Tripp
- Department of Ecology and Evolutionary BiologyUniversity of ColoradoBoulderCOUSA
- Museum of Natural HistoryUniversity of ColoradoBoulderCOUSA
| | - Kyle G. Dexter
- School of GeoSciencesUniversity of EdinburghEdinburghUK
- Royal Botanic Garden EdinburghEdinburghUK
| | - Heather B. Stone
- Department of Ecology and Evolutionary BiologyUniversity of ColoradoBoulderCOUSA
- Museum of Natural HistoryUniversity of ColoradoBoulderCOUSA
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16
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Affiliation(s)
- Ary T. Oliveira‐Filho
- Institute of Biological Sciences Federal University of Minas Gerais Belo Horizonte Brazil
| | - Kyle G. Dexter
- School of GeoSciences University of Edinburgh Edinburgh UK
- Department of Tropical Diversity Royal Botanic Garden Edinburgh Edinburgh UK
| | - R. Toby Pennington
- Department of Tropical Diversity Royal Botanic Garden Edinburgh Edinburgh UK
- Department of Geography College of Life and Environmental Sciences University of Exeter Exeter UK
| | | | - Marcelo L. Bueno
- Unidade Universitária de Mundo Novo Universidade Estadual de Mato Grosso do Sul Mundo Novo Brazil
| | - Danilo M. Neves
- Institute of Biological Sciences Federal University of Minas Gerais Belo Horizonte Brazil
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17
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Griffiths AR, Silman MR, Farfán Rios W, Feeley KJ, García Cabrera K, Meir P, Salinas N, Dexter KG. Evolutionary heritage shapes tree distributions along an Amazon‐to‐Andes elevation gradient. Biotropica 2020. [DOI: 10.1111/btp.12843] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
| | - Miles R. Silman
- Biology Department and Center for Energy, Environment and Sustainability Wake Forest University Winston‐Salem NC USA
| | - William Farfán Rios
- Living Earth Collaborative Washington University in Saint Louis St. Louis MO USA
- Center for Conservation and Sustainable Development Missouri Botanical Garden St. Louis MO USA
- Herbario Vargas (CUZ), Escuela Profesional de Biología Universidad Nacional de San Antonio Abad del Cusco Cusco Peru
| | - Kenneth J. Feeley
- Department of Biology University of Miami Coral Gables FL USA
- Fairchild Tropical Botanic Garden Coral Gables FL USA
| | - Karina García Cabrera
- Biology Department and Center for Energy, Environment and Sustainability Wake Forest University Winston‐Salem NC USA
| | - Patrick Meir
- School of Geosciences University of Edinburgh Edinburgh UK
- Research School of Biology Australian National University Canberra ACT Australia
| | - Norma Salinas
- Instituto de Ciencias de la Naturaleza, Territorio y Energías Renovables Pontificia Universidad Católica del Peru Lima Peru
| | - Kyle G. Dexter
- School of Geosciences University of Edinburgh Edinburgh UK
- Royal Botanic Garden Edinburgh Edinburgh UK
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18
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Sanchez-Martinez P, Martínez-Vilalta J, Dexter KG, Segovia RA, Mencuccini M. Adaptation and coordinated evolution of plant hydraulic traits. Ecol Lett 2020; 23:1599-1610. [PMID: 32808458 DOI: 10.1111/ele.13584] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Revised: 04/21/2020] [Accepted: 07/07/2020] [Indexed: 12/30/2022]
Abstract
Hydraulic properties control plant responses to climate and are likely to be under strong selective pressure, but their macro-evolutionary history remains poorly characterised. To fill this gap, we compiled a global dataset of hydraulic traits describing xylem conductivity (Ks ), xylem resistance to embolism (P50), sapwood allocation relative to leaf area (Hv) and drought exposure (ψmin ), and matched it with global seed plant phylogenies. Individually, these traits present medium to high levels of phylogenetic signal, partly related to environmental selective pressures shaping lineage evolution. Most of these traits evolved independently of each other, being co-selected by the same environmental pressures. However, the evolutionary correlations between P50 and ψmin and between Ks and Hv show signs of deeper evolutionary integration because of functional, developmental or genetic constraints, conforming to evolutionary modules. We do not detect evolutionary integration between conductivity and resistance to embolism, rejecting a hardwired trade-off for this pair of traits.
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Affiliation(s)
- Pablo Sanchez-Martinez
- CREAF, Cerdanyola del Valles, Barcelona, 08193, Spain.,Universitat Autònoma de Barcelona, Cerdanyola del Valles, Barcelona, 08193, Spain
| | - Jordi Martínez-Vilalta
- CREAF, Cerdanyola del Valles, Barcelona, 08193, Spain.,Universitat Autònoma de Barcelona, Cerdanyola del Valles, Barcelona, 08193, Spain
| | - Kyle G Dexter
- School of GeoSciences, University of Edinburgh, Edinburgh, UK.,Royal Botanic Garden Edinburgh, Edinburgh, UK
| | - Ricardo A Segovia
- School of GeoSciences, University of Edinburgh, Edinburgh, UK.,Instituto de Ecología y Biodiversidad, Santiago, Chile
| | - Maurizio Mencuccini
- CREAF, Cerdanyola del Valles, Barcelona, 08193, Spain.,ICREA, Pg. Lluís Companys 23, Barcelona, 08010, Spain
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19
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Ter Steege H, Prado PI, Lima RAFD, Pos E, de Souza Coelho L, de Andrade Lima Filho D, Salomão RP, Amaral IL, de Almeida Matos FD, Castilho CV, Phillips OL, Guevara JE, de Jesus Veiga Carim M, Cárdenas López D, Magnusson WE, Wittmann F, Martins MP, Sabatier D, Irume MV, da Silva Guimarães JR, Molino JF, Bánki OS, Piedade MTF, Pitman NCA, Ramos JF, Monteagudo Mendoza A, Venticinque EM, Luize BG, Núñez Vargas P, Silva TSF, de Leão Novo EMM, Reis NFC, Terborgh J, Manzatto AG, Casula KR, Honorio Coronado EN, Montero JC, Duque A, Costa FRC, Castaño Arboleda N, Schöngart J, Zartman CE, Killeen TJ, Marimon BS, Marimon-Junior BH, Vasquez R, Mostacedo B, Demarchi LO, Feldpausch TR, Engel J, Petronelli P, Baraloto C, Assis RL, Castellanos H, Simon MF, de Medeiros MB, Quaresma A, Laurance SGW, Rincón LM, Andrade A, Sousa TR, Camargo JL, Schietti J, Laurance WF, de Queiroz HL, Nascimento HEM, Lopes MA, de Sousa Farias E, Magalhães JLL, Brienen R, Aymard C GA, Revilla JDC, Vieira ICG, Cintra BBL, Stevenson PR, Feitosa YO, Duivenvoorden JF, Mogollón HF, Araujo-Murakami A, Ferreira LV, Lozada JR, Comiskey JA, de Toledo JJ, Damasco G, Dávila N, Lopes A, García-Villacorta R, Draper F, Vicentini A, Cornejo Valverde F, Lloyd J, Gomes VHF, Neill D, Alonso A, Dallmeier F, de Souza FC, Gribel R, Arroyo L, Carvalho FA, de Aguiar DPP, do Amaral DD, Pansonato MP, Feeley KJ, Berenguer E, Fine PVA, Guedes MC, Barlow J, Ferreira J, Villa B, Peñuela Mora MC, Jimenez EM, Licona JC, Cerón C, Thomas R, Maas P, Silveira M, Henkel TW, Stropp J, Paredes MR, Dexter KG, Daly D, Baker TR, Huamantupa-Chuquimaco I, Milliken W, Pennington T, Tello JS, Pena JLM, Peres CA, Klitgaard B, Fuentes A, Silman MR, Di Fiore A, von Hildebrand P, Chave J, van Andel TR, Hilário RR, Phillips JF, Rivas-Torres G, Noronha JC, Prieto A, Gonzales T, de Sá Carpanedo R, Gonzales GPG, Gómez RZ, de Jesus Rodrigues D, Zent EL, Ruschel AR, Vos VA, Fonty É, Junqueira AB, Doza HPD, Hoffman B, Zent S, Barbosa EM, Malhi Y, de Matos Bonates LC, de Andrade Miranda IP, Silva N, Barbosa FR, Vela CIA, Pinto LFM, Rudas A, Albuquerque BW, Umaña MN, Carrero Márquez YA, van der Heijden G, Young KR, Tirado M, Correa DF, Sierra R, Costa JBP, Rocha M, Vilanova Torre E, Wang O, Oliveira AA, Kalamandeen M, Vriesendorp C, Ramirez-Angulo H, Holmgren M, Nascimento MT, Galbraith D, Flores BM, Scudeller VV, Cano A, Ahuite Reategui MA, Mesones I, Baider C, Mendoza C, Zagt R, Urrego Giraldo LE, Ferreira C, Villarroel D, Linares-Palomino R, Farfan-Rios W, Farfan-Rios W, Casas LF, Cárdenas S, Balslev H, Torres-Lezama A, Alexiades MN, Garcia-Cabrera K, Valenzuela Gamarra L, Valderrama Sandoval EH, Ramirez Arevalo F, Hernandez L, Sampaio AF, Pansini S, Palacios Cuenca W, de Oliveira EA, Pauletto D, Levesley A, Melgaço K, Pickavance G. Biased-corrected richness estimates for the Amazonian tree flora. Sci Rep 2020; 10:10130. [PMID: 32576943 PMCID: PMC7311553 DOI: 10.1038/s41598-020-66686-3] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Accepted: 05/19/2020] [Indexed: 11/09/2022] Open
Abstract
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia is best approximated by a logseries with aggregated individuals, where aggregation increases with rarity. By averaging several methods to estimate total richness, we confirm that over 15,000 tree species are expected to occur in Amazonia. We also show that using ten times the number of plots would result in an increase to just ~50% of those 15,000 estimated species. To get a more complete sample of all tree species, rigorous field campaigns may be needed but the number of trees in Amazonia will remain an estimate for years to come.
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Affiliation(s)
- Hans Ter Steege
- Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands.
- Systems Ecology, Vrije Universiteit Amsterdam, De Boelelaan 1087, Amsterdam, 1081 HV, The Netherlands.
| | - Paulo I Prado
- Instituto de Biociências - Dept. Ecologia, Universidade de Sao Paulo - USP, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP, 05508-090, Brazil.
| | - Renato A F de Lima
- Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands
- Instituto de Biociências - Dept. Ecologia, Universidade de Sao Paulo - USP, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP, 05508-090, Brazil
| | - Edwin Pos
- Ecology & Biodiversity Group, Utrecht University, Padualaan 8, Utrecht, 3584 CH, The Netherlands
| | - Luiz de Souza Coelho
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Diogenes de Andrade Lima Filho
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Rafael P Salomão
- Programa Professor Visitante Nacional Sênior na Amazônia - CAPES, Universidade Federal Rural da Amazônia, Av. Perimetral, s/n, Belém, PA, Brazil
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040-170, Brazil
| | - Iêda Leão Amaral
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Francisca Dionízia de Almeida Matos
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Carolina V Castilho
- EMBRAPA - Centro de Pesquisa Agroflorestal de Roraima, BR 174, km 8 - Distrito Industrial, Boa Vista, RR, 69301-970, Brazil
| | - Oliver L Phillips
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Juan Ernesto Guevara
- Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud-BIOMAS, Universidad de las Américas, Campus Queri, Quito, Ecuador
- Keller Science Action Center, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL, 60605-2496, USA
| | - Marcelo de Jesus Veiga Carim
- Departamento de Botânica, Instituto de Pesquisas Científicas e Tecnológicas do Amapá - IEPA, Rodovia JK, Km 10, Campus do IEPA da Fazendinha, Amapá, 68901-025, Brazil
| | - Dairon Cárdenas López
- Herbario Amazónico Colombiano, Instituto SINCHI, Calle 20 No 5-44, Bogotá, DC, Colombia
| | - William E Magnusson
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Florian Wittmann
- Dep. of Wetland Ecology, Institute of Geography and Geoecology, Karlsruhe Institute of Technology - KIT, Josefstr.1, Rastatt, D-76437, Germany
- Biogeochemistry, Max Planck Institute for Chemistry, Hahn-Meitner Weg 1, Mainz, 55128, Germany
| | - Maria Pires Martins
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Daniel Sabatier
- AMAP, IRD, Cirad, CNRS, INRA, Université de Montpellier, Montpellier, F-34398, France
| | - Mariana Victória Irume
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - José Renan da Silva Guimarães
- Departamento de Botânica, Instituto de Pesquisas Científicas e Tecnológicas do Amapá - IEPA, Rodovia JK, Km 10, Campus do IEPA da Fazendinha, Amapá, 68901-025, Brazil
| | - Jean-François Molino
- AMAP, IRD, Cirad, CNRS, INRA, Université de Montpellier, Montpellier, F-34398, France
| | - Olaf S Bánki
- Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands
| | - Maria Teresa Fernandez Piedade
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Nigel C A Pitman
- Science and Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL, 60605-2496, USA
| | - José Ferreira Ramos
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | - Eduardo Martins Venticinque
- Centro de Biociências, Departamento de Ecologia, Universidade Federal do Rio Grande do Norte, Av. Senador Salgado Filho, 3000, Natal, RN, 59072-970, Brazil
| | - Bruno Garcia Luize
- Departamento de Ecologia, Universidade Estadual Paulista - UNESP - Instituto de Biociências - IB, Av. 24 A, 1515, Bela Vista, Rio Claro, SP, 13506-900, Brazil
| | - Percy Núñez Vargas
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Avenida de la Cultura, Nro 733, Cusco, Cuzco, Peru
| | | | - Evlyn Márcia Moraes de Leão Novo
- Divisao de Sensoriamento Remoto - DSR, Instituto Nacional de Pesquisas Espaciais - INPE, Av. dos Astronautas, 1758, Jardim da Granja, São José dos Campos, SP, 12227-010, Brazil
| | - Neidiane Farias Costa Reis
- Programa de Pós- Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Campus Porto Velho Km 9,5 bairro Rural, Porto Velho, RO, 76.824-027, Brazil
| | - John Terborgh
- Department of Biology and Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, 4870, Australia
| | - Angelo Gilberto Manzatto
- Departamento de Biologia, Universidade Federal de Rondônia, Rodovia BR 364 s/n Km 9,5 - Sentido Acre, Unir, Porto Velho, RO, 76.824-027, Brazil
| | - Katia Regina Casula
- Programa de Pós- Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Campus Porto Velho Km 9,5 bairro Rural, Porto Velho, RO, 76.824-027, Brazil
| | - Euridice N Honorio Coronado
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
- Instituto de Investigaciones de la Amazonía Peruana (IIAP), Av. A. Quiñones km 2,5, Iquitos, Loreto, 784, Peru
| | - Juan Carlos Montero
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
- Instituto Boliviano de Investigacion Forestal, Av. 6 de agosto #28, Km. 14, Doble via La Guardia, Casilla 6204, Santa Cruz, Santa Cruz, Bolivia
| | - Alvaro Duque
- Departamento de Ciencias Forestales, Universidad Nacional de Colombia, Calle 64 x Cra 65, Medellín, Antioquia, 1027, Colombia
| | - Flávia R C Costa
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | - Jochen Schöngart
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Charles Eugene Zartman
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | - Beatriz S Marimon
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, MT, Brazil
| | - Ben Hur Marimon-Junior
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, MT, Brazil
| | | | - Bonifacio Mostacedo
- Facultad de Ciencias Agrícolas, Universidad Autónoma Gabriel René Moreno, Santa Cruz, Santa Cruz, Bolivia
| | - Layon O Demarchi
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Ted R Feldpausch
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
- Geography, College of Life and Environmental Sciences, University of Exeter, Rennes Drive, Exeter, EX4 4RJ, UK
| | - Julien Engel
- AMAP, IRD, Cirad, CNRS, INRA, Université de Montpellier, Montpellier, F-34398, France
- International Center for Tropical Botany (ICTB) Department of Biological Sciences, Florida International University, 11200 SW 8th Street, OE 243, Miami, FL, 33199, USA
| | - Pascal Petronelli
- Cirad UMR Ecofog, AgrosParisTech,CNRS,INRA,Univ Guyane, Campus agronomique, Kourou Cedex, 97379, France
| | - Chris Baraloto
- International Center for Tropical Botany (ICTB) Department of Biological Sciences, Florida International University, 11200 SW 8th Street, OE 243, Miami, FL, 33199, USA
| | - Rafael L Assis
- Natural History Museum, University of Oslo, Postboks 1172, Oslo, 0318, Norway
| | - Hernán Castellanos
- Centro de Investigaciones Ecológicas de Guayana, Universidad Nacional Experimental de Guayana, Calle Chile, urbaniz Chilemex, Puerto Ordaz, Bolivar, Venezuela
| | - Marcelo Fragomeni Simon
- Prédio da Botânica e Ecologia, Embrapa Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Av. W5 Norte, Brasilia, DF, 70770-917, Brazil
| | - Marcelo Brilhante de Medeiros
- Prédio da Botânica e Ecologia, Embrapa Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Av. W5 Norte, Brasilia, DF, 70770-917, Brazil
| | - Adriano Quaresma
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Susan G W Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, 4870, Australia
| | - Lorena M Rincón
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Ana Andrade
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Thaiane R Sousa
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - José Luís Camargo
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Juliana Schietti
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - William F Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, 4870, Australia
| | - Helder Lima de Queiroz
- Diretoria Técnico-Científica, Instituto de Desenvolvimento Sustentável Mamirauá, Estrada do Bexiga, 2584, Tefé, AM, 69470-000, Brazil
| | - Henrique Eduardo Mendonça Nascimento
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Maria Aparecida Lopes
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Av. Augusto Corrêa 01, Belém, PA, 66075-110, Brazil
| | - Emanuelle de Sousa Farias
- Laboratório de Ecologia de Doenças Transmissíveis da Amazônia (EDTA), Instituto Leônidas e Maria Deane, Fiocruz, Rua Terezina, 476, Adrianópolis, Manaus, AM, 69060-001, Brazil
- Programa de Pós-graduação em Biodiversidade e Saúde, Instituto Oswaldo Cruz - IOC/FIOCRUZ, Pav. Arthur Neiva - Térreo, Av. Brasil, 4365 - Manguinhos, Rio de Janeiro, RJ, 21040-360, Brazil
| | - José Leonardo Lima Magalhães
- Programa de Pós-Graduação em Ecologia, Universidade Federal do Pará, Av. Augusto Corrêa 01, Belém, PA, 66075-110, Brazil
- Embrapa Amazônia Oriental, Trav. Dr. Enéas Pinheiro s/n°, Belém, PA, 66095-100, Brazil
| | - Roel Brienen
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Gerardo A Aymard C
- Programa de Ciencias del Agro y el Mar, Herbario Universitario (PORT), UNELLEZ-Guanare, Guanare, Portuguesa, 3350, Venezuela
| | - Juan David Cardenas Revilla
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Ima Célia Guimarães Vieira
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040-170, Brazil
| | - Bruno Barçante Ladvocat Cintra
- Instituto de Biociências - Dept. Botanica, Universidade de Sao Paulo - USP, Rua do Matão 277, Cidade Universitária, São Paulo, SP, 05508-090, Brazil
| | - Pablo R Stevenson
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
| | - Yuri Oliveira Feitosa
- Programa de Pós-Graduação em Biologia (Botânica), Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Joost F Duivenvoorden
- Institute of Biodiversity and Ecosystem Dynamics, University of Amsterdam, Sciencepark 904, Amsterdam, 1098 XH, The Netherlands
| | - Hugo F Mogollón
- Endangered Species Coalition, 8530 Geren Rd., Silver Spring, MD, 20901, USA
| | - Alejandro Araujo-Murakami
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Avenida Irala 565 Casilla Post al 2489, Santa Cruz, Santa Cruz, Bolivia
| | - Leandro Valle Ferreira
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040-170, Brazil
| | - José Rafael Lozada
- Facultad de Ciencias Forestales y Ambientales, Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Via Chorros de Milla, 5101, Mérida, Mérida, Venezuela
| | - James A Comiskey
- Inventory and Monitoring Program, National Park Service, 120 Chatham Lane, Fredericksburg, VA, 22405, USA
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - José Julio de Toledo
- Universidade Federal do Amapá, Ciências Ambientais, Rod. Juscelino Kubitschek km2, Macapá, AP, 68902-280, Brazil
| | - Gabriel Damasco
- Department of Integrative Biology, University of California, Berkeley, CA, 94720-3140, USA
| | - Nállarett Dávila
- Biologia Vegetal, Universidade Estadual de Campinas, Caixa Postal 6109, Campinas, SP, 13.083-970, Brazil
| | - Aline Lopes
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
- Department of Ecology, University of Brasilia, Brasilia, DF, 70904-970, Brazil
| | - Roosevelt García-Villacorta
- Department of Ecology and Evolutionary Biology, Cornell University, Corson Hall, 215 Tower Road, Ithaca, NY, 14850, USA
- Peruvian Center for Biodiversity and Conservation (PCBC), Iquitos, Peru
| | - Freddie Draper
- International Center for Tropical Botany (ICTB) Department of Biological Sciences, Florida International University, 11200 SW 8th Street, OE 243, Miami, FL, 33199, USA
- Department of Global Ecology, Carnegie Institution for Science, 260 Panama St., Stanford, CA, 94305, USA
| | - Alberto Vicentini
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | - Jon Lloyd
- Faculty of Natural Sciences, Department of Life Sciences, Imperial College London, Silwood Park, South Kensington Campus, London, SW7 2AZ, UK
| | - Vitor H F Gomes
- Escola de Negócios Tecnologia e Inovação, Centro Universitário do Pará, Belém, PA, Brazil
- Universidade Federal do Pará, Rua Augusto Corrêa 01, Belém, PA, 66075-110, Brazil
| | - David Neill
- Ecosistemas, Biodiversidad y Conservación de Especies, Universidad Estatal Amazónica, Km. 2 1/2 vía a Tena (Paso Lateral), Puyo, Pastaza, Ecuador
| | - Alfonso Alonso
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - Francisco Dallmeier
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - Fernanda Coelho de Souza
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Rogerio Gribel
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Luzmila Arroyo
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Avenida Irala 565 Casilla Post al 2489, Santa Cruz, Santa Cruz, Bolivia
| | - Fernanda Antunes Carvalho
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
- Universidade Federal de Minas Gerais, Instituto de Ciências Biológicas, Departamento de Genética, Ecologia e Evolução, Av. Antônio Carlos, 6627 Pampulha, Belo Horizonte, MG, 31270-901, Brazil
| | - Daniel Praia Portela de Aguiar
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Dário Dantas do Amaral
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040-170, Brazil
| | - Marcelo Petratti Pansonato
- Instituto de Biociências - Dept. Ecologia, Universidade de Sao Paulo - USP, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP, 05508-090, Brazil
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Kenneth J Feeley
- Department of Biology, University of Miami, Coral Gables, FL, 33146, USA
- Fairchild Tropical Botanic Garden, Coral Gables, FL, 33156, USA
| | - Erika Berenguer
- Environmental Change Institute, University of Oxford, Oxford, Oxfordshire, OX1 3QY, UK
- Lancaster Environment Centre, Lancaster University, Lancaster, Lancashire, LA1 4YQ, UK
| | - Paul V A Fine
- Department of Integrative Biology, University of California, Berkeley, CA, 94720-3140, USA
| | - Marcelino Carneiro Guedes
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amapá, Rod. Juscelino Kubitschek km 5, Macapá, Amapá, 68903-419, Brazil
| | - Jos Barlow
- Lancaster Environment Centre, Lancaster University, Lancaster, Lancashire, LA1 4YQ, UK
| | - Joice Ferreira
- Embrapa Amazônia Oriental, Trav. Dr. Enéas Pinheiro s/n°, Belém, PA, 66095-100, Brazil
| | - Boris Villa
- Direccíon de Evaluación Forestal y de Fauna Silvestre, Av. Javier Praod Oeste 693, Magdalena del Mar, Peru
| | | | - Eliana M Jimenez
- Grupo de Ecología y Conservación de Fauna y Flora Silvestre, Instituto Amazónico de Investigaciones Imani, Universidad Nacional de Colombia sede Amazonia, Leticia, Amazonas, Colombia
| | - Juan Carlos Licona
- Instituto Boliviano de Investigacion Forestal, Av. 6 de agosto #28, Km. 14, Doble via La Guardia, Casilla 6204, Santa Cruz, Santa Cruz, Bolivia
| | - Carlos Cerón
- Escuela de Biología Herbario Alfredo Paredes, Universidad Central, Ap. Postal 17.01.2177, Quito, Pichincha, Ecuador
| | - Raquel Thomas
- Iwokrama International Centre for Rain Forest Conservation and Development, Georgetown, Guyana
| | - Paul Maas
- Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands
| | - Marcos Silveira
- Museu Universitário/Centro de Ciências Biológicas e da Natureza/Laboratório de Botânica e Ecologia Vegetal, Universidade Federal do Acre, Rio Branco, AC, 69915-559, Brazil
| | - Terry W Henkel
- Department of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA, 95521, USA
| | - Juliana Stropp
- Institute of Biological and Health Sciences, Federal University of Alagoas, Av. Lourival Melo Mota, s/n, Tabuleiro do Martins, Maceio, AL, 57072-970, Brazil
| | - Marcos Ríos Paredes
- Servicios de Biodiversidad EIRL, Jr. Independencia 405, Iquitos, Loreto, 784, Peru
| | - Kyle G Dexter
- School of Geosciences, University of Edinburgh, 201 Crew Building, King's Buildings, Edinburgh, EH9 3JN, UK
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, 20a Inverleith Row, Edinburgh, Scotland, EH3 5LR, UK
| | - Doug Daly
- New York Botanical Garden, 2900 Southern Blvd, Bronx, New York, NY, 10458-5126, USA
| | - Tim R Baker
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Isau Huamantupa-Chuquimaco
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Avenida de la Cultura, Nro 733, Cusco, Cuzco, Peru
| | - William Milliken
- Natural Capital and Plant Health, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK
| | - Toby Pennington
- Geography, College of Life and Environmental Sciences, University of Exeter, Rennes Drive, Exeter, EX4 4RJ, UK
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, 20a Inverleith Row, Edinburgh, Scotland, EH3 5LR, UK
| | - J Sebastián Tello
- Center for Conservation and Sustainable Development, Missouri Botanical Garden, P.O. Box 299, St. Louis, MO, 63166-0299, USA
| | - José Luis Marcelo Pena
- Universidad Nacional de Jaén, Carretera Jaén San Ignacio Km 23, Jaén, Cajamarca, 06801, Peru
| | - Carlos A Peres
- School of Environmental Sciences, University of East Anglia, Norwich, NR4 7TJ, UK
| | - Bente Klitgaard
- Department for Identification & Naming, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK
| | - Alfredo Fuentes
- Center for Conservation and Sustainable Development, Missouri Botanical Garden, P.O. Box 299, St. Louis, MO, 63166-0299, USA
- Herbario Nacional de Bolivia, Universitario UMSA, Casilla 10077 Correo Central, La Paz, La Paz, Bolivia
| | - Miles R Silman
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, 1834 Wake Forest Rd, Winston Salem, NC, 27106, USA
| | - Anthony Di Fiore
- Department of Anthropology, University of Texas at Austin, SAC 5.150, 2201 Speedway Stop C3200, Austin, TX, 78712, USA
| | | | - Jerome Chave
- Laboratoire Evolution et Diversité Biologique, CNRS and Université Paul Sabatier, UMR 5174 EDB, Toulouse, 31000, France
| | - Tinde R van Andel
- Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands
- Biosystematics group, Wageningen University, Droevendaalsesteeg 1, Wageningen, 6708 PB, The Netherlands
| | - Renato Richard Hilário
- Universidade Federal do Amapá, Ciências Ambientais, Rod. Juscelino Kubitschek km2, Macapá, AP, 68902-280, Brazil
| | | | - Gonzalo Rivas-Torres
- Colegio de Ciencias Biológicas y Ambientales-COCIBA & Galapagos Institute for the Arts and Sciences-GAIAS, Universidad San Francisco de Quito-USFQ, Quito, Pichincha, Ecuador
- Department of Wildlife Ecology and Conservation, University of Florida, 110 Newins-Ziegler Hall, Gainesville, FL, 32611, USA
| | - Janaína Costa Noronha
- ICNHS, Federal University of Mato Grosso, Av. Alexandre Ferronato 1200, Setor Industrial, Sinop, MT, 78.557-267, Brazil
| | - Adriana Prieto
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Apartado 7945, Bogotá, DC, Colombia
| | - Therany Gonzales
- ACEER Foundation, Jirón Cusco N° 370, Puerto Maldonado, Madre de Dios, Peru
| | - Rainiellene de Sá Carpanedo
- ICNHS, Federal University of Mato Grosso, Av. Alexandre Ferronato 1200, Setor Industrial, Sinop, MT, 78.557-267, Brazil
| | | | - Ricardo Zárate Gómez
- PROTERRA, Instituto de Investigaciones de la Amazonía Peruana (IIAP), Av. A. Quiñones km 2,5, Iquitos, Loreto, 784, Peru
| | - Domingos de Jesus Rodrigues
- ICNHS, Federal University of Mato Grosso, Av. Alexandre Ferronato 1200, Setor Industrial, Sinop, MT, 78.557-267, Brazil
| | - Egleé L Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas - IVIC, Ado 20632, Caracas, DC, 1020 A, Venezuela
| | - Ademir R Ruschel
- Embrapa Amazônia Oriental, Trav. Dr. Enéas Pinheiro s/n°, Belém, PA, 66095-100, Brazil
| | - Vincent Antoine Vos
- Universidad Autónoma del Beni José Ballivián, Campus Universitario Final, Av. Ejercito, Riberalta, Beni, Bolivia
| | - Émile Fonty
- AMAP, IRD, Cirad, CNRS, INRA, Université de Montpellier, Montpellier, F-34398, France
- Direction régionale de la Guyane, ONF, Cayenne, F-97300, French Guiana
| | - André Braga Junqueira
- Institut de Ciència i Tecnologia Ambientals, Universitat Autònoma de Barcelona, 08193, Bellaterra, Barcelona, Spain
| | | | - Bruce Hoffman
- Amazon Conservation Team, Doekhieweg Oost #24, Paramaribo, Suriname
| | - Stanford Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas - IVIC, Ado 20632, Caracas, DC, 1020 A, Venezuela
| | - Edelcilio Marques Barbosa
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Yadvinder Malhi
- Environmental Change Institute, Oxford University Centre for the Environment, Dyson Perrins Building, South Parks Road, Oxford, England, OX1 3QY, UK
| | - Luiz Carlos de Matos Bonates
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Ires Paula de Andrade Miranda
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Natalino Silva
- Instituto de Ciência Agrárias, Universidade Federal Rural da Amazônia, Av. Presidente Tancredo Neves 2501, Belém, PA, 66.077-830, Brazil
| | - Flávia Rodrigues Barbosa
- ICNHS, Federal University of Mato Grosso, Av. Alexandre Ferronato 1200, Setor Industrial, Sinop, MT, 78.557-267, Brazil
| | - César I A Vela
- Escuela Profesional de Ingeniería Forestal, Universidad Nacional de San Antonio Abad del Cusco, Jirón San Martín 451, Puerto Maldonado, Madre de Dios, Peru
| | | | - Agustín Rudas
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Apartado 7945, Bogotá, DC, Colombia
| | - Bianca Weiss Albuquerque
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Maria Natalia Umaña
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Yrma Andreina Carrero Márquez
- Facultad de Ciencias Forestales y Ambientales, Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Via Chorros de Milla, 5101, Mérida, Mérida, Venezuela
| | | | - Kenneth R Young
- Geography and the Environment, University of Texas at Austin, 305 E. 23rd Street, CLA building, Austin, TX, 78712, USA
| | - Milton Tirado
- GeoIS, El Día 369 y El Telégrafo, 3° Piso, Quito, Pichincha, Ecuador
| | - Diego F Correa
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
- School of Agriculture and Food Sciences - ARC Centre of Excellence for Environmental Decisions CEED, The University of Queensland, St. Lucia, QLD, 4072, Australia
| | - Rodrigo Sierra
- GeoIS, El Día 369 y El Telégrafo, 3° Piso, Quito, Pichincha, Ecuador
| | - Janaina Barbosa Pedrosa Costa
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amapá, Rod. Juscelino Kubitschek km 5, Macapá, Amapá, 68903-419, Brazil
| | - Maira Rocha
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Emilio Vilanova Torre
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Conjunto Forestal, 5101, Mérida, Mérida, Venezuela
- School of Environmental and Forest Sciences, University of Washington, Seattle, WA, USA
| | - Ophelia Wang
- Environmental Science and Policy, Northern Arizona University, Flagstaff, AZ, 86011, USA
| | - Alexandre A Oliveira
- Instituto de Biociências - Dept. Ecologia, Universidade de Sao Paulo - USP, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP, 05508-090, Brazil
| | - Michelle Kalamandeen
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
- Laurentian University, 935 Ramsey Lake Road, Sudbury, Ontario, P3E 2C6, Canada
| | - Corine Vriesendorp
- Science and Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL, 60605-2496, USA
| | - Hirma Ramirez-Angulo
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Conjunto Forestal, 5101, Mérida, Mérida, Venezuela
| | - Milena Holmgren
- Resource Ecology Group, Wageningen University & Research, Droevendaalsesteeg 3a, Lumen, building number 100, Wageningen, Gelderland, 6708 PB, The Netherlands
| | - Marcelo Trindade Nascimento
- Laboratório de Ciências Ambientais, Universidade Estadual do Norte Fluminense, Av. Alberto Lamego 2000, Campos dos Goyatacazes, RJ, 28013-620, Brazil
| | - David Galbraith
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Bernardo Monteiro Flores
- University of Campinas, Plant Biology Department, Rua Monteiro Lobato, 255, Cidade Universitária Zeferino Vaz, Barão Geraldo, Campinas, São Paulo, CEP, 13083-862, Brazil
| | - Veridiana Vizoni Scudeller
- Departamento de Biologia, Universidade Federal do Amazonas - UFAM - Instituto de Ciências Biológicas - ICB1, Av General Rodrigo Octavio 6200, Manaus, AM, 69080-900, Brazil
| | - Angela Cano
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
- Cambridge University Botanic Garden, 1 Brookside, Cambridge, CB2 1JE, UK
| | | | - Italo Mesones
- Department of Integrative Biology, University of California, Berkeley, CA, 94720-3140, USA
| | - Cláudia Baider
- Instituto de Biociências - Dept. Ecologia, Universidade de Sao Paulo - USP, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP, 05508-090, Brazil
- The Mauritius Herbarium, Agricultural Services, Ministry of Agro-Industry and Food Security, Reduit, 80835, Mauritius
| | - Casimiro Mendoza
- Escuela de Ciencias Forestales (ESFOR), Universidad Mayor de San Simon (UMSS), Sacta, Cochabamba, Bolivia
- FOMABO, Manejo Forestal en las Tierras Tropicales de Bolivia, Sacta, Cochabamba, Bolivia
| | - Roderick Zagt
- Tropenbos International, Lawickse Allee 11 PO Box 232, Wageningen, 6700 AE, The Netherlands
| | - Ligia Estela Urrego Giraldo
- Departamento de Ciencias Forestales, Universidad Nacional de Colombia, Calle 64 x Cra 65, Medellín, Antioquia, 1027, Colombia
| | - Cid Ferreira
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Daniel Villarroel
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Avenida Irala 565 Casilla Post al 2489, Santa Cruz, Santa Cruz, Bolivia
| | - Reynaldo Linares-Palomino
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - William Farfan-Rios
- Center for Conservation and Sustainable Development, Missouri Botanical Garden, P.O. Box 299, St. Louis, MO, 63166-0299, USA
- Living Earth Collaborative, Washington University in Saint Louis, St. Louis, MO, 63130, USA
| | - William Farfan-Rios
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Avenida de la Cultura, Nro 733, Cusco, Cuzco, Peru
| | - Luisa Fernanda Casas
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
| | - Sasha Cárdenas
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
| | - Henrik Balslev
- Department of Bioscience, Aarhus University, Building 1540 Ny Munkegade, Aarhus C, Aarhus, DK, 8000, Denmark
| | - Armando Torres-Lezama
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Conjunto Forestal, 5101, Mérida, Mérida, Venezuela
| | - Miguel N Alexiades
- School of Anthropology and Conservation, University of Kent, Marlowe Building, Canterbury, Kent, CT2 7NR, UK
| | - Karina Garcia-Cabrera
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, 1834 Wake Forest Rd, Winston Salem, NC, 27106, USA
| | | | - Elvis H Valderrama Sandoval
- Department of Biology, University of Missouri, St. Louis, MO, 63121, USA
- Facultad de Biologia, Universidad Nacional de la Amazonia Peruana, Pevas 5ta cdra, Iquitos, Loreto, Peru
| | - Freddy Ramirez Arevalo
- Facultad de Biologia, Universidad Nacional de la Amazonia Peruana, Pevas 5ta cdra, Iquitos, Loreto, Peru
| | - Lionel Hernandez
- Centro de Investigaciones Ecológicas de Guayana, Universidad Nacional Experimental de Guayana, Calle Chile, urbaniz Chilemex, Puerto Ordaz, Bolivar, Venezuela
| | - Adeilza Felipe Sampaio
- Programa de Pós- Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Campus Porto Velho Km 9,5 bairro Rural, Porto Velho, RO, 76.824-027, Brazil
| | - Susamar Pansini
- Programa de Pós- Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Campus Porto Velho Km 9,5 bairro Rural, Porto Velho, RO, 76.824-027, Brazil
| | | | - Edmar Almeida de Oliveira
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, MT, Brazil
| | - Daniela Pauletto
- Instituto de Biodiversidade e Floresta, Universidade Federal do Oeste do Pará, Rua Vera Paz, Campus Tapajós, Santarém, PA, 68015-110, Brazil
| | - Aurora Levesley
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Karina Melgaço
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Georgia Pickavance
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
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20
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Segovia RA, Pennington RT, Baker TR, Coelho de Souza F, Neves DM, Davis CC, Armesto JJ, Olivera-Filho AT, Dexter KG. Freezing and water availability structure the evolutionary diversity of trees across the Americas. Sci Adv 2020; 6:eaaz5373. [PMID: 32494713 PMCID: PMC7202884 DOI: 10.1126/sciadv.aaz5373] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Accepted: 02/19/2020] [Indexed: 05/16/2023]
Abstract
The historical course of evolutionary diversification shapes the current distribution of biodiversity, but the main forces constraining diversification are still a subject of debate. We unveil the evolutionary structure of tree species assemblages across the Americas to assess whether an inability to move or an inability to evolve is the predominant constraint in plant diversification and biogeography. We find a fundamental divide in tree lineage composition between tropical and extratropical environments, defined by the absence versus presence of freezing temperatures. Within the Neotropics, we uncover a further evolutionary split between moist and dry forests. Our results demonstrate that American tree lineages tend to retain their ancestral environmental relationships and that phylogenetic niche conservatism is the primary force structuring the distribution of tree biodiversity. Our study establishes the pervasive importance of niche conservatism to community assembly even at intercontinental scales.
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Affiliation(s)
- Ricardo A. Segovia
- School of GeoSciences, University of Edinburgh, Edinburgh, UK
- Instituto de Ecología y Biodiversidad, Santiago, Chile
| | - R. Toby Pennington
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, Edinburgh, UK
- Department of Geography, University of Exeter, Exeter, UK
| | - Tim R. Baker
- School of Geography, University of Leeds, Leeds, UK
| | - Fernanda Coelho de Souza
- School of Geography, University of Leeds, Leeds, UK
- Departamento de Engenharia Florestal, Universidade de Brasília (UNB), Campus Universitário Darcy Ribeiro, Asa Norte, Brasília 70910-900, Brazil
| | - Danilo M. Neves
- Department of Botany, Federal University of Minas Gerais, Belo Horizonte, Brazil
| | - Charles C. Davis
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA
| | - Juan J. Armesto
- Instituto de Ecología y Biodiversidad, Santiago, Chile
- Departamento de Ecología, Universidad Católica de Chile, Santiago, Chile
- Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción, Chile
| | - Ary T. Olivera-Filho
- Department of Botany, Federal University of Minas Gerais, Belo Horizonte, Brazil
| | - Kyle G. Dexter
- School of GeoSciences, University of Edinburgh, Edinburgh, UK
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, Edinburgh, UK
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21
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Coelho de Souza F, Dexter KG, Phillips OL, Pennington RT, Neves D, Sullivan MJP, Alvarez-Davila E, Alves Á, Amaral I, Andrade A, Aragao LEOC, Araujo-Murakami A, Arets EJMM, Arroyo L, Aymard C GA, Bánki O, Baraloto C, Barroso JG, Boot RGA, Brienen RJW, Brown F, Camargo JLC, Castro W, Chave J, Cogollo A, Comiskey JA, Cornejo-Valverde F, da Costa AL, de Camargo PB, Di Fiore A, Feldpausch TR, Galbraith DR, Gloor E, Goodman RC, Gilpin M, Herrera R, Higuchi N, Honorio Coronado EN, Jimenez-Rojas E, Killeen TJ, Laurance S, Laurance WF, Lopez-Gonzalez G, Lovejoy TE, Malhi Y, Marimon BS, Marimon-Junior BH, Mendoza C, Monteagudo-Mendoza A, Neill DA, Vargas PN, Peñuela Mora MC, Pickavance GC, Pipoly JJ, Pitman NCA, Poorter L, Prieto A, Ramirez F, Roopsind A, Rudas A, Salomão RP, Silva N, Silveira M, Singh J, Stropp J, Ter Steege H, Terborgh J, Thomas-Caesar R, Umetsu RK, Vasquez RV, Célia-Vieira I, Vieira SA, Vos VA, Zagt RJ, Baker TR. Evolutionary diversity is associated with wood productivity in Amazonian forests. Nat Ecol Evol 2019; 3:1754-1761. [PMID: 31712699 DOI: 10.1038/s41559-019-1007-y] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Accepted: 09/16/2019] [Indexed: 11/09/2022]
Abstract
Higher levels of taxonomic and evolutionary diversity are expected to maximize ecosystem function, yet their relative importance in driving variation in ecosystem function at large scales in diverse forests is unknown. Using 90 inventory plots across intact, lowland, terra firme, Amazonian forests and a new phylogeny including 526 angiosperm genera, we investigated the association between taxonomic and evolutionary metrics of diversity and two key measures of ecosystem function: aboveground wood productivity and biomass storage. While taxonomic and phylogenetic diversity were not important predictors of variation in biomass, both emerged as independent predictors of wood productivity. Amazon forests that contain greater evolutionary diversity and a higher proportion of rare species have higher productivity. While climatic and edaphic variables are together the strongest predictors of productivity, our results show that the evolutionary diversity of tree species in diverse forest stands also influences productivity. As our models accounted for wood density and tree size, they also suggest that additional, unstudied, evolutionarily correlated traits have significant effects on ecosystem function in tropical forests. Overall, our pan-Amazonian analysis shows that greater phylogenetic diversity translates into higher levels of ecosystem function: tropical forest communities with more distantly related taxa have greater wood productivity.
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Affiliation(s)
| | - Kyle G Dexter
- School of Geosciences, University of Edinburgh, Edinburgh, UK.,Royal Botanic Garden Edinburgh, Edinburgh, UK
| | | | - R Toby Pennington
- Royal Botanic Garden Edinburgh, Edinburgh, UK.,Geography Department, College of Life and Environmental Sciences, University of Exeter, Exeter, UK
| | - Danilo Neves
- Department of Botany, Federal University of Minas Gerais, Belo Horizonte, Brazil
| | | | - Esteban Alvarez-Davila
- Escuela de Ciencias Agropecuarias y Ambientales, Universidad Nacional Abierta y a Distancia, Sede José Celestino Mutis, Bogotá, Colombia
| | - Átila Alves
- Projeto TEAM-Manaus, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Ieda Amaral
- Projeto TEAM-Manaus, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
| | - Ana Andrade
- Biological Dynamics of Forest Fragment Project, INPA and STRI, Manaus, Brazil
| | - Luis E O C Aragao
- Geography Department, College of Life and Environmental Sciences, University of Exeter, Exeter, UK.,National Institute for Space Research, São José dos Campos, Brazil
| | - Alejandro Araujo-Murakami
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autonoma Gabriel Rene Moreno, Santa Cruz, Bolivia
| | - Eric J M M Arets
- Wageningen Environmental Research, Wageningen University and Research, Wageningen, the Netherlands
| | - Luzmilla Arroyo
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autonoma Gabriel Rene Moreno, Santa Cruz, Bolivia
| | - Gerardo A Aymard C
- UNELLEZ-Guanare, Programa del Agro y del Mar, Herbario Universitario PORT, Mesa de Cavacas, Venezuela
| | - Olaf Bánki
- Naturalis Biodiversity Center, Leiden, the Netherlands
| | - Christopher Baraloto
- International Center for Tropical Botany, Department of Biological Sciences, Florida International University, Miami, FL, USA
| | | | - Rene G A Boot
- Tropenbos International, Wageningen, the Netherlands
| | | | | | - José Luís C Camargo
- Biological Dynamics of Forest Fragment Project, INPA and STRI, Manaus, Brazil
| | - Wendeson Castro
- Programa de Pós-Graduação em Ecologia e Manejo de Recursos Naturais, Universidade Federal do Acre, Rio Branco, Brazil
| | - Jerome Chave
- Laboratoire Evolution et Diversité Biologique, Université Toulouse III Paul Sabatier, Toulouse, France
| | - Alvaro Cogollo
- Jardín Botánico de Medellín Joaquín Antonio Uribe, Medellin, Colombia
| | - James A Comiskey
- National Park Service, Fredericksburg, VA, USA.,Smithsonian Institution, Washington DC, USA
| | | | | | - Plínio B de Camargo
- Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, São Paulo, Brazil
| | - Anthony Di Fiore
- Department of Anthropology, University of Texas at Austin, Austin, TX, USA
| | - Ted R Feldpausch
- Geography Department, College of Life and Environmental Sciences, University of Exeter, Exeter, UK
| | | | | | - Rosa C Goodman
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | | | - Rafael Herrera
- Centro de Ecología, IVIC, Caracas, Venezuela.,Institut für Geographie und Regionalforschung, Univerity of Vienna, Vienna, Austria
| | - Niro Higuchi
- Instituto Nacional de Pesquisas da Amazônia, Manaus, Brasil
| | | | | | | | - Susan Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, Australia
| | - William F Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, Australia
| | | | - Thomas E Lovejoy
- Environmental Science and Policy Department, George Mason University, Washington DC, USA
| | - Yadvinder Malhi
- Environmental Change Institute, School of Geography and the Environment, University of Oxford, Oxford, UK
| | | | | | - Casimiro Mendoza
- Unidad Académica del Trópico, Escuela de Ciencias Forestales, Universidad Mayor de San Simón, Sacta, Bolivia
| | | | - David A Neill
- Facultad de Ingeniería Ambiental, Universidad Estatal Amazónica, Puyo, Ecuador
| | | | | | | | - John J Pipoly
- Broward County Parks and Recreation Division, Davie, FL, USA
| | - Nigel C A Pitman
- Center for Tropical Conservation, Duke University, Durham, NC, USA
| | - Lourens Poorter
- Forest Ecology and Forest Management Group, Wageningen University and Research, Wageningen, the Netherlands
| | - Adriana Prieto
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Bogota, Colombia
| | - Freddy Ramirez
- Universidad Nacional de la Amazonía Peruana, Iquitos, Peru
| | - Anand Roopsind
- Department of Biological Sciences, Boise State University, Boise, ID, USA
| | - Agustin Rudas
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Bogota, Colombia
| | - Rafael P Salomão
- Museu Paraense Emilio Goeldi, Belém, Brazil.,Universidade Federal Rural da Amazônia, Belém, Brasil
| | | | - Marcos Silveira
- Museu Universitário, Centro de Ciências Biológicas e da Natureza, Universidade Federal do Acre, Rio Branco, Brazil
| | - James Singh
- Guyana Forestry Commission, Georgetown, Guyana
| | - Juliana Stropp
- Institute of Biological and Health Sciences, Federal University of Alagoas Maceio, Maceio, Brazil
| | - Hans Ter Steege
- Naturalis Biodiversity Center, Leiden, the Netherlands.,Systems Ecology, Vrije Universiteit, Amsterdam, the Netherlands
| | - John Terborgh
- Department of Biology and Florida Museum of Natural History, University of Florida, Gainesville, FL, USA.,School of Science and Engineering, James Cook University, Cairns, Queensland, Australia
| | - Raquel Thomas-Caesar
- Iwokrama International Centre for Rainforest Conservation and Development, Georgetown, Guyana
| | | | | | | | - Simone A Vieira
- Núcleo de Estudos e Pesquisas Ambientais, Universidade Estadual de Campinas, Campinas, Brazil
| | - Vincent A Vos
- Centro de Investigación y Promoción del Campesinado-Regional Norte Amazónico, Riberalta, Bolivia.,Universidad Autónoma del Beni, Riberalta, Bolivia
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22
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Ter Steege H, Henkel TW, Helal N, Marimon BS, Marimon-Junior BH, Huth A, Groeneveld J, Sabatier D, Coelho LDS, Filho DDAL, Salomão RP, Amaral IL, Matos FDDA, Castilho CV, Phillips OL, Guevara JE, Carim MDJV, Cárdenas López D, Magnusson WE, Wittmann F, Irume MV, Martins MP, Guimarães JRDS, Molino JF, Bánki OS, Piedade MTF, Pitman NCA, Mendoza AM, Ramos JF, Luize BG, Moraes de Leão Novo EM, Núñez Vargas P, Silva TSF, Venticinque EM, Manzatto AG, Reis NFC, Terborgh J, Casula KR, Honorio Coronado EN, Montero JC, Feldpausch TR, Duque A, Costa FRC, Arboleda NC, Schöngart J, Killeen TJ, Vasquez R, Mostacedo B, Demarchi LO, Assis RL, Baraloto C, Engel J, Petronelli P, Castellanos H, de Medeiros MB, Quaresma A, Simon MF, Andrade A, Camargo JL, Laurance SGW, Laurance WF, Rincón LM, Schietti J, Sousa TR, de Sousa Farias E, Lopes MA, Magalhães JLL, Mendonça Nascimento HE, Lima de Queiroz H, Aymard C GA, Brienen R, Revilla JDC, Vieira ICG, Cintra BBL, Stevenson PR, Feitosa YO, Duivenvoorden JF, Mogollón HF, Araujo-Murakami A, Ferreira LV, Lozada JR, Comiskey JA, de Toledo JJ, Damasco G, Dávila N, Draper F, García-Villacorta R, Lopes A, Vicentini A, Alonso A, Dallmeier F, Gomes VHF, Lloyd J, Neill D, de Aguiar DPP, Arroyo L, Carvalho FA, de Souza FC, do Amaral DD, Feeley KJ, Gribel R, Pansonato MP, Barlow J, Berenguer E, Ferreira J, Fine PVA, Guedes MC, Jimenez EM, Licona JC, Peñuela Mora MC, Villa B, Cerón C, Maas P, Silveira M, Stropp J, Thomas R, Baker TR, Daly D, Dexter KG, Huamantupa-Chuquimaco I, Milliken W, Pennington T, Ríos Paredes M, Fuentes A, Klitgaard B, Pena JLM, Peres CA, Silman MR, Tello JS, Chave J, Cornejo Valverde F, Di Fiore A, Hilário RR, Phillips JF, Rivas-Torres G, van Andel TR, von Hildebrand P, Noronha JC, Barbosa EM, Barbosa FR, de Matos Bonates LC, Carpanedo RDS, Dávila Doza HP, Fonty É, GómeZárate Z R, Gonzales T, Gallardo Gonzales GP, Hoffman B, Junqueira AB, Malhi Y, Miranda IPDA, Pinto LFM, Prieto A, Rodrigues DDJ, Rudas A, Ruschel AR, Silva N, Vela CIA, Vos VA, Zent EL, Zent S, Weiss Albuquerque B, Cano A, Carrero Márquez YA, Correa DF, Costa JBP, Flores BM, Galbraith D, Holmgren M, Kalamandeen M, Nascimento MT, Oliveira AA, Ramirez-Angulo H, Rocha M, Scudeller VV, Sierra R, Tirado M, Umaña Medina MN, van der Heijden G, Vilanova Torre E, Vriesendorp C, Wang O, Young KR, Ahuite Reategui MA, Baider C, Balslev H, Cárdenas S, Casas LF, Farfan-Rios W, Ferreira C, Linares-Palomino R, Mendoza C, Mesones I, Torres-Lezama A, Giraldo LEU, Villarroel D, Zagt R, Alexiades MN, de Oliveira EA, Garcia-Cabrera K, Hernandez L, Palacios Cuenca W, Pansini S, Pauletto D, Ramirez Arevalo F, Sampaio AF, Sandoval EHV, Valenzuela Gamarra L, Levesley A, Pickavance G, Melgaço K. Rarity of monodominance in hyperdiverse Amazonian forests. Sci Rep 2019; 9:13822. [PMID: 31554920 PMCID: PMC6761143 DOI: 10.1038/s41598-019-50323-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2019] [Accepted: 09/02/2019] [Indexed: 11/09/2022] Open
Abstract
Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such “monodominant” forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tree Diversity Network (ATDN). Utilizing a simple defining metric of at least half of the trees ≥ 10 cm diameter belonging to one species, we found only a few occurrences of monodominance in Amazonia, and the phenomenon was not significantly linked to previously hypothesized life history traits such wood density, seed mass, ectomycorrhizal associations, or Rhizobium nodulation. In our analysis, coppicing (the formation of sprouts at the base of the tree or on roots) was the only trait significantly linked to monodominance. While at specific locales coppicing or ectomycorrhizal associations may confer a considerable advantage to a tree species and lead to its monodominance, very few species have these traits. Mining of the ATDN dataset suggests that monodominance is quite rare in Amazonia, and may be linked primarily to edaphic factors.
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Affiliation(s)
- Hans Ter Steege
- Biodiversity Dynamics, Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300, RA, The Netherlands. .,Systems Ecology, Free University, De Boelelaan 1087, Amsterdam, 1081, HV, The Netherlands.
| | - Terry W Henkel
- Department of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA, 95521, USA
| | - Nora Helal
- Biodiversity Dynamics, Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300, RA, The Netherlands
| | - Beatriz S Marimon
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, MT, Brazil
| | - Ben Hur Marimon-Junior
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, MT, Brazil
| | - Andreas Huth
- Department of Ecological Modelling, Helmholtz Centre for Environmental Research - UFZ, Permoserstr. 15, Leipzig, 4318, Germany
| | - Jürgen Groeneveld
- Department of Ecological Modelling, Helmholtz Centre for Environmental Research - UFZ, Permoserstr. 15, Leipzig, 4318, Germany.,Institute of Forest Growth and Computer Sciences, Technische Universitaet Dresden, Postfach 1117, Tharandt, 1735, Germany
| | - Daniel Sabatier
- AMAP, IRD, CIRAD, CNRS, INRA, Université de Montpellier, TA A-51/PS2, Bd. de la Lironde, A comprehensive, Montpellier, F-34398, France
| | - Luiz de Souza Coelho
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Diogenes de Andrade Lima Filho
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Rafael P Salomão
- Programa Professor Visitante Nacional Sênior na Amazônia - CAPES, Universidade Federal Rural da Amazônia, Av. Perimetral, s/n, Belém, PA, Brazil.,Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040-170, Brazil
| | - Iêda Leão Amaral
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Francisca Dionízia de Almeida Matos
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Carolina V Castilho
- EMBRAPA - Centro de Pesquisa Agroflorestal de Roraima, BR 174, km 8 - Distrito Industrial, Boa Vista, RR, 69301-970, Brazil
| | - Oliver L Phillips
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Juan Ernesto Guevara
- Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud-BIOMAS, Universidad de las Américas, Campus Queri, Quito, Ecuador.,Keller Science Action Center, The Field Museum, 1400S. Lake Shore Drive, Chicago, IL, 60605-2496, USA
| | - Marcelo de Jesus Veiga Carim
- Departamento de Botânica, Instituto de Pesquisas Científicas e Tecnológicas do Amapá - IEPA, Rodovia JK, Km 10, Campus do IEPA da Fazendinha, Amapá, 68901-025, Brazil
| | - Dairon Cárdenas López
- Herbario Amazónico Colombiano, Instituto SINCHI, Calle 20 No 5-44, Bogotá, DC, Colombia
| | - William E Magnusson
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Florian Wittmann
- Dep. of Wetland Ecology, Institute of Geography and Geoecology, Karlsruhe Institute of Technology - KIT, Josefstr.1, Rastatt, D-76437, Germany.,Biogeochemistry, Max Planck Institute for Chemistry, Hahn-Meitner Weg 1, Mainz, 55128, Germany
| | - Mariana Victória Irume
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Maria Pires Martins
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - José Renan da Silva Guimarães
- Departamento de Botânica, Instituto de Pesquisas Científicas e Tecnológicas do Amapá - IEPA, Rodovia JK, Km 10, Campus do IEPA da Fazendinha, Amapá, 68901-025, Brazil
| | - Jean-François Molino
- AMAP, IRD, CIRAD, CNRS, INRA, Université de Montpellier, TA A-51/PS2, Bd. de la Lironde, A comprehensive, Montpellier, F-34398, France
| | - Olaf S Bánki
- Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300, RA, The Netherlands
| | - Maria Teresa Fernandez Piedade
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Nigel C A Pitman
- Science and Education, The Field Museum, 1400S. Lake Shore Drive, Chicago, IL, 60605-2496, USA
| | | | - José Ferreira Ramos
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Bruno Garcia Luize
- Departamento de Ecologia, Universidade Estadual Paulista - UNESP - Instituto de Biociências - IB, Av. 24A, 1515, Bela Vista, Rio Claro, SP, 13506-900, Brazil
| | - Evlyn Márcia Moraes de Leão Novo
- Divisao de Sensoriamento Remoto - DSR, Instituto Nacional de Pesquisas Espaciais - INPE, Av. dos Astronautas, 1758, Jardim da Granja, São José dos Campos, SP, 12227-010, Brazil
| | - Percy Núñez Vargas
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Avenida de la Cultura, Nro 733, Cusco, Cuzco, Peru
| | - Thiago Sanna Freire Silva
- Departamento de Geografia, Universidade Estadual Paulista -UNESP - Instituto de Geociências e Ciências Extas - IGCE, Bela Vista, Rio Claro, SP, 13506-900, Brazil
| | - Eduardo Martins Venticinque
- Centro de Biociências, Departamento de Ecologia, Universidade Federal do Rio Grande do Norte, Av. Senador Salgado Filho, 3000, Natal, RN, 59072-970, Brazil
| | - Angelo Gilberto Manzatto
- Departamento de Biologia, Universidade Federal de Rondônia, Rodovia BR 364s/n Km 9,5 - Sentido Acre, Unir, Porto Velho, RO, 76.824-027, Brazil
| | - Neidiane Farias Costa Reis
- Programa de Pós- Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Campus Porto Velho Km 9,5 bairro Rural, Porto Velho, RO, 76.824-027, Brazil
| | - John Terborgh
- Department of Biology and Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA.,Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, 4870, Australia
| | - Katia Regina Casula
- Programa de Pós- Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Campus Porto Velho Km 9,5 bairro Rural, Porto Velho, RO, 76.824-027, Brazil
| | - Euridice N Honorio Coronado
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK.,Instituto de Investigaciones de la Amazonía Peruana (IIAP), Av. A. Quiñones km 2,5, Iquitos, Loreto, 784, Peru
| | - Juan Carlos Montero
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil.,Instituto Boliviano de Investigacion Forestal, Av. 6 de agosto #28, Km. 14, Doble via La Guardia, Casilla 6204, Santa Cruz, Santa Cruz, Bolivia
| | - Ted R Feldpausch
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK.,Geography, College of Life and Environmental Sciences, University of Exeter, Rennes Drive, Exeter, EX4 4RJ, UK
| | - Alvaro Duque
- Departamento de Ciencias Forestales, Universidad Nacional de Colombia, Calle 64 x Cra 65, Medellín, Antioquia, 1027, Colombia
| | - Flávia R C Costa
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | - Jochen Schöngart
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | | | - Bonifacio Mostacedo
- Facultad de Ciencias Agrícolas, Universidad Autónoma Gabriel René Moreno, Santa Cruz, Santa Cruz, Bolivia
| | - Layon O Demarchi
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Rafael L Assis
- Natural History Museum, University of Oslo, Postboks 1172, Oslo, 318, Norway
| | - Chris Baraloto
- International Center for Tropical Botany (ICTB) Department of Biological Sciences, Florida International University, 11200 SW 8th Street, OE 243, Miami, FL, 33199, USA
| | - Julien Engel
- AMAP, IRD, CIRAD, CNRS, INRA, Université de Montpellier, TA A-51/PS2, Bd. de la Lironde, A comprehensive, Montpellier, F-34398, France.,International Center for Tropical Botany (ICTB) Department of Biological Sciences, Florida International University, 11200 SW 8th Street, OE 243, Miami, FL, 33199, USA
| | - Pascal Petronelli
- Cirad UMR Ecofog, AgrosParisTech, CNRS, INRA, Univ Guyane, Campus agronomique, Kourou Cedex, 97379, France
| | - Hernán Castellanos
- Centro de Investigaciones Ecológicas de Guayana, Universidad Nacional Experimental de Guayana, Calle Chile, urbaniz Chilemex, Puerto Ordaz, Bolivar, Venezuela
| | - Marcelo Brilhante de Medeiros
- Prédio da Botânica e Ecologia, Embrapa Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Av. W5 Norte, Brasilia, DF, 70770-917, Brazil
| | - Adriano Quaresma
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Marcelo Fragomeni Simon
- Prédio da Botânica e Ecologia, Embrapa Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Av. W5 Norte, Brasilia, DF, 70770-917, Brazil
| | - Ana Andrade
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - José Luís Camargo
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Susan G W Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, 4870, Australia
| | - William F Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Cairns, Queensland, 4870, Australia
| | - Lorena M Rincón
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Juliana Schietti
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Thaiane R Sousa
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Emanuelle de Sousa Farias
- Laboratório de Ecologia de Doenças Transmissíveis da Amazônia (EDTA), Instituto Leônidas e Maria Deane, Fiocruz, Rua Terezina, 476, Adrianópolis, Manaus, AM, 69060-001, Brazil.,Programa de Pós-graduação em Biodiversidade e Saúde, Instituto Oswaldo Cruz - IOC/FIOCRUZ, Pav. Arthur Neiva - Térreo, Av. Brasil, 4365 - Manguinhos, Rio de Janeiro, RJ, 21040-360, Brazil
| | - Maria Aparecida Lopes
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Av. Augusto Corrêa 01, Belém, PA, 66075-110, Brazil
| | - José Leonardo Lima Magalhães
- Programa de Pós-Graduação em Ecologia, Universidade Federal do Pará, Av. Augusto Corrêa 01, Belém, PA, 66075-110, Brazil.,Embrapa Amazônia Oriental, Trav. Dr. Enéas Pinheiro s/no., Belém, PA, 66095-100, Brazil
| | - Henrique Eduardo Mendonça Nascimento
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Helder Lima de Queiroz
- Diretoria Técnico-Científica, Instituto de Desenvolvimento Sustentável Mamirauá, Estrada do Bexiga, 2584, Tefé, AM, 69470-000, Brazil
| | - Gerardo A Aymard C
- Programa de Ciencias del Agro y el Mar, Herbario Universitario (PORT), UNELLEZ-Guanare, Guanare, Portuguesa, 3350, Venezuela
| | - Roel Brienen
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Juan David Cardenas Revilla
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Ima Célia Guimarães Vieira
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040-170, Brazil
| | - Bruno Barçante Ladvocat Cintra
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK.,Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Pablo R Stevenson
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
| | - Yuri Oliveira Feitosa
- Programa de Pós-Graduação em Biologia (Botânica), Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Joost F Duivenvoorden
- Institute of Biodiversity and Ecosystem Dynamics, University of Amsterdam, Sciencepark 904, Amsterdam, 1098, XH, The Netherlands
| | - Hugo F Mogollón
- Endangered Species Coalition, 8530 Geren Rd., Silver Spring, MD, 20901, USA
| | - Alejandro Araujo-Murakami
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Avenida Irala 565 Casilla Post al 2489, Santa Cruz, Santa Cruz, Bolivia
| | - Leandro Valle Ferreira
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040-170, Brazil
| | - José Rafael Lozada
- Facultad de Ciencias Forestales y Ambientales, Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Via Chorros de Milla, 5101, Mérida, Mérida, Venezuela
| | - James A Comiskey
- Inventory and Monitoring Program, National Park Service, 120 Chatham Lane, Fredericksburg, VA, 22405, USA.,Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - José Julio de Toledo
- Universidade Federal do Amapá, Ciências Ambientais, Rod. Juscelino Kubitschek km2, Macapá, AP, 68902-280, Brazil
| | - Gabriel Damasco
- Department of Integrative Biology, University of California, Berkeley, CA, 94720-3140, USA
| | - Nállarett Dávila
- Biologia Vegetal, Universidade Estadual de Campinas, Caixa Postal 6109, Campinas, SP, 13.083-970, Brazil
| | - Freddie Draper
- International Center for Tropical Botany (ICTB) Department of Biological Sciences, Florida International University, 11200 SW 8th Street, OE 243, Miami, FL, 33199, USA.,Department of Global Ecology, Carnegie Institution for Science, 260 Panama St., Stanford, CA, 94305, USA
| | - Roosevelt García-Villacorta
- Institute of Molecular Plant Sciences, University of Edinburgh, Mayfield Rd, Edinburgh, EH3 5LR, UK.,Tropical Diversity Section, Royal Botanic Garden Edinburgh, 20a Inverleith Row, Edinburgh, Scotland, EH3 5LR, UK
| | - Aline Lopes
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil.,Department of Ecology, University of Brasilia, Brasilia, DF, 70904-970, Brazil
| | - Alberto Vicentini
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Alfonso Alonso
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - Francisco Dallmeier
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - Vitor H F Gomes
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040-170, Brazil.,Programa de Pós-Graduação em Ciência Ambientais, Universidade Federal do Pará, Rua Augusto Corrêa 01, Belém, PA, 66075-110, Brazil
| | - Jon Lloyd
- Faculty of Natural Sciences, Department of Life Sciences, Imperial College London, Silwood Park, South Kensington Campus, London, SW7 2AZ, UK
| | - David Neill
- Ecosistemas, Biodiversidad y Conservación de Especies, Universidad Estatal Amazónica, Km. 2 1/2 vía a Tena (Paso Lateral), Puyo, Pastaza, Ecuador
| | - Daniel Praia Portela de Aguiar
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Luzmila Arroyo
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Avenida Irala 565 Casilla Post al 2489, Santa Cruz, Santa Cruz, Bolivia
| | - Fernanda Antunes Carvalho
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil.,Universidade Federal de Minas Gerais, Instituto de Ciências Biológicas, Departamento de Genética, Ecologia e Evolução, Av. Antônio Carlos, 6627 Pampulha, Belo Horizonte, MG, 31270-901, Brazil
| | - Fernanda Coelho de Souza
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK.,Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Dário Dantas do Amaral
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040-170, Brazil
| | - Kenneth J Feeley
- Department of Biology, University of Miami, Coral Gables, FL, 33146, USA.,Fairchild Tropical Botanic Garden, Coral Gables, FL, 33156, USA
| | - Rogerio Gribel
- Diretoria de Pesquisas Científicas, Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | - Marcelo Petratti Pansonato
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil.,Instituto de Biociências - Dept. Ecologia, Universidade de Sao Paulo - USP, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP, 05508-090, Brazil
| | - Jos Barlow
- Lancaster Environment Centre, Lancaster University, Lancaster, Lancashire, LA1 4YQ, UK
| | - Erika Berenguer
- Environmental Change Institute, University of Oxford, Oxford, Oxfordshire, OX1 3QY, UK
| | - Joice Ferreira
- Embrapa Amazônia Oriental, Trav. Dr. Enéas Pinheiro s/no., Belém, PA, 66095-100, Brazil
| | - Paul V A Fine
- Department of Integrative Biology, University of California, Berkeley, CA, 94720-3140, USA
| | - Marcelino Carneiro Guedes
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amapá, Rod. Juscelino Kubitschek km 5, Macapá, Amapá, 68903-419, Brazil
| | - Eliana M Jimenez
- Grupo de Investigación en Tecnologías de la Información y Medio Ambiente, Instituto Tecnológico de Antioquia - Institución Universitaria, Calle 78B No. 72A-220, Medellín, Colombia
| | - Juan Carlos Licona
- Instituto Boliviano de Investigacion Forestal, Av. 6 de agosto #28, Km. 14, Doble via La Guardia, Casilla 6204, Santa Cruz, Santa Cruz, Bolivia
| | | | - Boris Villa
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Carlos Cerón
- Escuela de Biología Herbario Alfredo Paredes, Universidad Central, Ap. Postal 17.01.2177, Quito, Pichincha, Ecuador
| | - Paul Maas
- Taxonomy and Systematics, Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300, RA, The Netherlands
| | - Marcos Silveira
- Museu Universitário/Centro de Ciências Biológicas e da Natureza/Laboratório de Botânica e Ecologia Vegetal, Universidade Federal do Acre, Rio Branco, AC, 69915-559, Brazil
| | - Juliana Stropp
- Institute of Biological and Health Sciences, Federal University of Alagoas, Av. Lourival Melo Mota, s/n, Tabuleiro do Martins, Maceio, AL, 57072-970, Brazil
| | - Raquel Thomas
- Iwokrama International Centre for Rainforest Conservation, Georgetown, Guyana
| | - Tim R Baker
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Doug Daly
- New York Botanical Garden, 2900 Southern Blvd, Bronx, New York, NY, 10458-5126, USA
| | - Kyle G Dexter
- Tropical Diversity Section, Royal Botanic Garden Edinburgh, 20a Inverleith Row, Edinburgh, Scotland, EH3 5LR, UK.,School of Geosciences, University of Edinburgh, 201 Crew Building, King's Buildings, Edinburgh, EH9 3JN, UK
| | - Isau Huamantupa-Chuquimaco
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Avenida de la Cultura, Nro 733, Cusco, Cuzco, Peru
| | - William Milliken
- Natural Capital and Plant Health, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK
| | - Toby Pennington
- Geography, College of Life and Environmental Sciences, University of Exeter, Rennes Drive, Exeter, EX4 4RJ, UK.,Tropical Diversity Section, Royal Botanic Garden Edinburgh, 20a Inverleith Row, Edinburgh, Scotland, EH3 5LR, UK
| | - Marcos Ríos Paredes
- Servicios de Biodiversidad EIRL, Jr. Independencia 405, Iquitos, Loreto, 784, Peru
| | - Alfredo Fuentes
- Herbario Nacional de Bolivia, Universitario UMSA, Casilla 10077 Correo Central, La Paz, La Paz, Bolivia.,Center for Conservation and Sustainable Development, Missouri Botanical Garden, P.O. Box 299, St. Louis, MO, 63166-0299, USA
| | - Bente Klitgaard
- Department for Identification & Naming, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK
| | - José Luis Marcelo Pena
- Department of Forestry Management, Universidad Nacional Agraria La Molina, Avenido La Molina, Apdo. 456, La Molina, Lima, Peru
| | - Carlos A Peres
- School of Environmental Sciences, University of East Anglia, Norwich, NR4 7TJ, UK
| | - Miles R Silman
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, 1834 Wake Forest Rd, Winston Salem, NC, 27106, USA
| | - J Sebastián Tello
- Center for Conservation and Sustainable Development, Missouri Botanical Garden, P.O. Box 299, St. Louis, MO, 63166-0299, USA
| | - Jerome Chave
- Laboratoire Evolution et Diversité Biologique, CNRS and Université Paul Sabatier, UMR 5174 EDB, Toulouse, 31000, France
| | | | - Anthony Di Fiore
- Department of Anthropology, University of Texas at Austin, SAC 5.150, 2201 Speedway Stop C3200, Austin, TX, 78712, USA
| | - Renato Richard Hilário
- Universidade Federal do Amapá, Ciências Ambientais, Rod. Juscelino Kubitschek km2, Macapá, AP, 68902-280, Brazil
| | | | - Gonzalo Rivas-Torres
- Colegio de Ciencias Biológicas y Ambientales-COCIBA & Galapagos Institute for the Arts and Sciences-GAIAS, Universidad San Francisco de Quito-USFQ, Quito, Pichincha, Ecuador.,Department of Wildlife Ecology and Conservation, University of Florida, 110 Newins-Ziegler Hall, Gainesville, FL, 32611, USA
| | - Tinde R van Andel
- Biodiversity Dynamics, Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300, RA, The Netherlands
| | | | - Janaína Costa Noronha
- ICNHS, Federal University of Mato Grosso, Av. Alexandre Ferronato 1200, Setor Industrial, Sinop, MT, 78.557-267, Brazil
| | - Edelcilio Marques Barbosa
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Flávia Rodrigues Barbosa
- ICNHS, Federal University of Mato Grosso, Av. Alexandre Ferronato 1200, Setor Industrial, Sinop, MT, 78.557-267, Brazil
| | - Luiz Carlos de Matos Bonates
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Rainiellen de Sá Carpanedo
- ICNHS, Federal University of Mato Grosso, Av. Alexandre Ferronato 1200, Setor Industrial, Sinop, MT, 78.557-267, Brazil
| | | | - Émile Fonty
- AMAP, IRD, CIRAD, CNRS, INRA, Université de Montpellier, TA A-51/PS2, Bd. de la Lironde, A comprehensive, Montpellier, F-34398, France.,Direction régionale de la Guyane, ONF, Cayenne, F-97300, French Guiana
| | - Ricardo GómeZárate Z
- PROTERRA, Instituto de Investigaciones de la Amazonía Peruana (IIAP), Av. A. Quiñones km 2,5, Iquitos, Loreto, 784, Peru
| | - Therany Gonzales
- ACEER Foundation, Jirón Cusco No. 370, Puerto Maldonado, Madre de Dios, Peru
| | | | - Bruce Hoffman
- Amazon Conservation Team, Doekhieweg Oost #24, Paramaribo, Suriname
| | - André Braga Junqueira
- Institut de Ciència i Tecnologia Ambientals, Universitat Autònoma de Barcelona, 08193, Bellaterra, Barcelona, Spain
| | - Yadvinder Malhi
- Environmental Change Institute, Oxford University Centre for the Environment, Dyson Perrins Building, South Parks Road, Oxford, England, OX1 3QY, UK
| | - Ires Paula de Andrade Miranda
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | - Adriana Prieto
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Apartado 7945, Bogotá, DC, Colombia
| | - Domingos de Jesus Rodrigues
- ICNHS, Federal University of Mato Grosso, Av. Alexandre Ferronato 1200, Setor Industrial, Sinop, MT, 78.557-267, Brazil
| | - Agustín Rudas
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Apartado 7945, Bogotá, DC, Colombia
| | - Ademir R Ruschel
- Embrapa Amazônia Oriental, Trav. Dr. Enéas Pinheiro s/no., Belém, PA, 66095-100, Brazil
| | - Natalino Silva
- Instituto de Ciência Agrárias, Universidade Federal Rural da Amazônia, Av. Presidente Tancredo Neves 2501, Belém, PA, 66.077-830, Brazil
| | - César I A Vela
- Escuela Profesional de Ingeniería Forestal, Universidad Nacional de San Antonio Abad del Cusco, Jirón San Martín 451, Puerto Maldonado, Madre de Dios, Peru
| | - Vincent Antoine Vos
- Universidad Autónoma del Beni José Ballivián, Campus Universitario Final, Av. Ejercito, Riberalta, Beni, Bolivia
| | - Egleé L Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas - IVIC, Ado 20632, Caracas, Caracas, 1020 A, Venezuela
| | - Stanford Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas - IVIC, Ado 20632, Caracas, Caracas, 1020 A, Venezuela
| | - Bianca Weiss Albuquerque
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Angela Cano
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia.,Cambridge University Botanic Garden, 1 Brookside., Cambridge, CB2 1JE, UK
| | - Yrma Andreina Carrero Márquez
- Facultad de Ciencias Forestales y Ambientales, Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes, Via Chorros de Milla, 5101, Mérida, Mérida, Venezuela
| | - Diego F Correa
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia.,School of Agriculture and Food Sciences - ARC Centre of Excellence for Environmental Decisions CEED, The University of Queensland, St. Lucia, QLD, 4072, Australia
| | - Janaina Barbosa Pedrosa Costa
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amapá, Rod. Juscelino Kubitschek km 5, Macapá, Amapá, 68903-419, Brazil
| | - Bernardo Monteiro Flores
- University of Campinas, Plant Biology Department, Rua Monteiro Lobato, 255, Cidade Universitária Zeferino Vaz, Barão Geraldo, Campinas, São Paulo, CEP, 13083-862, Brazil
| | - David Galbraith
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Milena Holmgren
- Resource Ecology Group, Wageningen University & Research, Droevendaalsesteeg 3a, Lumen, building number 100, Wageningen, Gelderland, 6708 PB, The Netherlands
| | | | - Marcelo Trindade Nascimento
- Laboratório de Ciências Ambientais, Universidade Estadual do Norte Fluminense, Av. Alberto Lamego 2000, Campos dos Goyatacazes, RJ, 28013-620, Brazil
| | - Alexandre A Oliveira
- Instituto de Biociências - Dept. Ecologia, Universidade de Sao Paulo - USP, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP, 05508-090, Brazil
| | - Hirma Ramirez-Angulo
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Conjunto Forestal, 5101, Mérida, Mérida, Venezuela
| | - Maira Rocha
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Veridiana Vizoni Scudeller
- Departamento de Biologia, Universidade Federal do Amazonas - UFAM - Instituto de Ciências Biológicas - ICB1, Av General Rodrigo Octavio 6200, Manaus, AM, 69080-900, Brazil
| | - Rodrigo Sierra
- GeoIS, El Día 369y El Telégrafo, 3° Piso, Quito, Pichincha, Ecuador
| | - Milton Tirado
- GeoIS, El Día 369y El Telégrafo, 3° Piso, Quito, Pichincha, Ecuador
| | - Maria Natalia Umaña Medina
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia.,Department of Biology, University of Maryland, College Park, MD, 20742, USA
| | | | - Emilio Vilanova Torre
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Conjunto Forestal, 5101, Mérida, Mérida, Venezuela.,School of Environmental and Forest Sciences, University of Washington, Seattle, WA, 98195-2100, USA
| | - Corine Vriesendorp
- Science and Education, The Field Museum, 1400S. Lake Shore Drive, Chicago, IL, 60605-2496, USA
| | - Ophelia Wang
- Environmental Science and Policy, Northern Arizona University, Flagstaff, AZ, 86011, USA
| | - Kenneth R Young
- Geography and the Environment, University of Texas at Austin, 305 E. 23rd Street, CLA building, Austin, TX, 78712, USA
| | | | - Cláudia Baider
- Instituto de Biociências - Dept. Ecologia, Universidade de Sao Paulo - USP, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP, 05508-090, Brazil.,The Mauritius Herbarium, Agricultural Services, Ministry of Agro-Industry and Food Security, Reduit, 80835, Mauritius
| | - Henrik Balslev
- Department of Bioscience, Aarhus University, Building 1540 Ny Munkegade, Aarhus C, Aarhus, DK-8000, Denmark
| | - Sasha Cárdenas
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
| | - Luisa Fernanda Casas
- Laboratorio de Ecología de Bosques Tropicales y Primatología, Universidad de los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
| | - William Farfan-Rios
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, 1834 Wake Forest Rd, Winston Salem, NC, 27106, USA
| | - Cid Ferreira
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo, 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Reynaldo Linares-Palomino
- Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - Casimiro Mendoza
- FOMABO, Manejo Forestal en las Tierras Tropicales de Bolivia, Sacta, Cochabamba, Bolivia.,Escuela de Ciencias Forestales (ESFOR), Universidad Mayor de San Simon (UMSS), Sacta, Cochabamba, Bolivia
| | - Italo Mesones
- Department of Integrative Biology, University of California, Berkeley, CA, 94720-3140, USA
| | - Armando Torres-Lezama
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Conjunto Forestal, 5101, Mérida, Mérida, Venezuela
| | - Ligia Estela Urrego Giraldo
- Departamento de Ciencias Forestales, Universidad Nacional de Colombia, Calle 64 x Cra 65, Medellín, Antioquia, 1027, Colombia
| | - Daniel Villarroel
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno, Avenida Irala 565 Casilla Post al 2489, Santa Cruz, Santa Cruz, Bolivia
| | - Roderick Zagt
- Tropenbos International, Lawickse Allee 11 PO Box 232, Wageningen, 6700 AE, The Netherlands
| | - Miguel N Alexiades
- School of Anthropology and Conservation, University of Kent, Marlowe Building, Canterbury, Kent, CT2 7NR, UK
| | - Edmar Almeida de Oliveira
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, MT, Brazil
| | - Karina Garcia-Cabrera
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, 1834 Wake Forest Rd, Winston Salem, NC, 27106, USA
| | - Lionel Hernandez
- Centro de Investigaciones Ecológicas de Guayana, Universidad Nacional Experimental de Guayana, Calle Chile, urbaniz Chilemex, Puerto Ordaz, Bolivar, Venezuela
| | | | - Susamar Pansini
- Programa de Pós- Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Campus Porto Velho Km 9,5 bairro Rural, Porto Velho, RO, 76.824-027, Brazil
| | - Daniela Pauletto
- Instituto de Biodiversidade e Floresta, Universidade Federal do Oeste do Pará, Rua Vera Paz, Campus Tapajós, Santarém, PA, 68015-110, Brazil
| | - Freddy Ramirez Arevalo
- Facultad de Biologia, Universidad Nacional de la Amazonia Peruana, Pevas 5ta cdra, Iquitos, Loreto, Peru
| | - Adeilza Felipe Sampaio
- Programa de Pós- Graduação em Biodiversidade e Biotecnologia PPG- Bionorte, Universidade Federal de Rondônia, Campus Porto Velho Km 9,5 bairro Rural, Porto Velho, RO, 76.824-027, Brazil
| | - Elvis H Valderrama Sandoval
- Facultad de Biologia, Universidad Nacional de la Amazonia Peruana, Pevas 5ta cdra, Iquitos, Loreto, Peru.,Department of Biology, University of Missouri, St. Louis, MO, 63121, USA
| | | | - Aurora Levesley
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Georgia Pickavance
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Karina Melgaço
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
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23
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MacAllister S, Mencuccini M, Sommer U, Engel J, Hudson A, Salmon Y, Dexter KG. Drought-induced mortality in Scots pine: opening the metabolic black box. Tree Physiol 2019; 39:1358-1370. [PMID: 31038161 DOI: 10.1093/treephys/tpz049] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2018] [Revised: 04/11/2019] [Accepted: 04/15/2019] [Indexed: 06/09/2023]
Abstract
Forests are sensitive to droughts, which increase the mortality rate of tree species. Various processes have been proposed to underlie drought-induced tree mortality, including hydraulic failure, carbon starvation and increased susceptibility to natural enemies. To give insights into these processes, we assessed the metabolic effects of a mortality-inducing drought on seedlings of Pinus sylvestris L. (Scots Pine), a widespread and important Eurasian species. We found divergence over time in the foliar metabolic composition of droughted vs well-watered seedlings, with the former showing increased abundance of aromatic amino acids and decreases in secondary metabolism associated with defence. We observed no significant differences amongst provenances in these effects: seedlings from drought-prone areas showed the same foliar metabolic changes under drought as seedlings from moist environments, although morphological effects of drought varied by provenance. Overall, our results demonstrate how severe drought prior to death may target particular primary and secondary metabolic pathways, weakening defences against natural enemies and contributing to the risk of drought-induced mortality in P. sylvestris.
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Affiliation(s)
| | | | - Ulf Sommer
- NBAF-Birmingham, School of Biosciences, University of Birmingham, UK
| | - Jasper Engel
- NBAF-Birmingham, School of Biosciences, University of Birmingham, UK
| | - Andrew Hudson
- School of Biological Sciences, University of Edinburgh, UK
| | | | - Kyle G Dexter
- School of GeoSciences, University of Edinburgh, UK
- Royal Botanic Garden Edinburgh, UK
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24
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Honorio Coronado EN, Dexter KG, Hart ML, Phillips OL, Pennington RT. Comparative phylogeography of five widespread tree species: Insights into the history of western Amazonia. Ecol Evol 2019; 9:7333-7345. [PMID: 31380054 PMCID: PMC6662334 DOI: 10.1002/ece3.5306] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2019] [Revised: 04/20/2019] [Accepted: 05/04/2019] [Indexed: 11/26/2022] Open
Abstract
Various historical processes have been put forth as drivers of patterns in the spatial distribution of Amazonian trees and their population genetic variation. We tested whether five widespread tree species show congruent phylogeographic breaks and similar patterns of demographic expansion, which could be related to proposed Pleistocene refugia or the presence of geological arches in western Amazonia. We sampled Otoba parvifolia/glycycarpa (Myristicaceae), Clarisia biflora, Poulsenia armata, Ficus insipida (all Moraceae), and Jacaratia digitata (Caricaceae) across the western Amazon Basin. Plastid DNA (trnH-psbA; 674 individuals from 34 populations) and nuclear ribosomal internal transcribed spacers (ITS; 214 individuals from 30 populations) were sequenced to assess genetic diversity, genetic differentiation, population genetic structure, and demographic patterns. Overall genetic diversity for both markers varied among species, with higher values in populations of shade-tolerant species than in pioneer species. Spatial analysis of molecular variance (SAMOVA) identified three genetically differentiated groups for the plastid marker for each species, but the areas of genetic differentiation were not concordant among species. Fewer SAMOVA groups were found for ITS, with no detectable genetic differentiation among populations in pioneers. The lack of spatially congruent phylogeographic breaks across species suggests no common biogeographic history of these Amazonian tree species. The idiosyncratic phylogeographic patterns of species could be due instead to species-specific responses to geological and climatic changes. Population genetic patterns were similar among species with similar biological features, indicating that the ecological characteristics of species impact large-scale phylogeography.
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Affiliation(s)
| | - Kyle G. Dexter
- School of GeoSciencesUniversity of EdinburghEdinburghUK
- Royal Botanic Garden EdinburghEdinburghUK
| | | | | | - R. Toby Pennington
- Royal Botanic Garden EdinburghEdinburghUK
- Department of GeographyUniversity of ExeterExeterUK
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25
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Esquivel‐Muelbert A, Baker TR, Dexter KG, Lewis SL, Brienen RJW, Feldpausch TR, Lloyd J, Monteagudo‐Mendoza A, Arroyo L, Álvarez-Dávila E, Higuchi N, Marimon BS, Marimon-Junior BH, Silveira M, Vilanova E, Gloor E, Malhi Y, Chave J, Barlow J, Bonal D, Davila Cardozo N, Erwin T, Fauset S, Hérault B, Laurance S, Poorter L, Qie L, Stahl C, Sullivan MJP, ter Steege H, Vos VA, Zuidema PA, Almeida E, Almeida de Oliveira E, Andrade A, Vieira SA, Aragão L, Araujo‐Murakami A, Arets E, Aymard C GA, Baraloto C, Camargo PB, Barroso JG, Bongers F, Boot R, Camargo JL, Castro W, Chama Moscoso V, Comiskey J, Cornejo Valverde F, Lola da Costa AC, del Aguila Pasquel J, Di Fiore A, Fernanda Duque L, Elias F, Engel J, Flores Llampazo G, Galbraith D, Herrera Fernández R, Honorio Coronado E, Hubau W, Jimenez‐Rojas E, Lima AJN, Umetsu RK, Laurance W, Lopez‐Gonzalez G, Lovejoy T, Aurelio Melo Cruz O, Morandi PS, Neill D, Núñez Vargas P, Pallqui Camacho NC, Parada Gutierrez A, Pardo G, Peacock J, Peña‐Claros M, Peñuela‐Mora MC, Petronelli P, Pickavance GC, Pitman N, Prieto A, Quesada C, Ramírez‐Angulo H, Réjou‐Méchain M, Restrepo Correa Z, Roopsind A, Rudas A, Salomão R, Silva N, Silva Espejo J, Singh J, Stropp J, Terborgh J, Thomas R, Toledo M, Torres‐Lezama A, Valenzuela Gamarra L, van de Meer PJ, van der Heijden G, van der Hout P, Vasquez Martinez R, Vela C, Vieira ICG, Phillips OL. Compositional response of Amazon forests to climate change. Glob Chang Biol 2019; 25:39-56. [PMID: 30406962 PMCID: PMC6334637 DOI: 10.1111/gcb.14413] [Citation(s) in RCA: 123] [Impact Index Per Article: 24.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2018] [Revised: 06/27/2018] [Accepted: 07/04/2018] [Indexed: 05/05/2023]
Abstract
Most of the planet's diversity is concentrated in the tropics, which includes many regions undergoing rapid climate change. Yet, while climate-induced biodiversity changes are widely documented elsewhere, few studies have addressed this issue for lowland tropical ecosystems. Here we investigate whether the floristic and functional composition of intact lowland Amazonian forests have been changing by evaluating records from 106 long-term inventory plots spanning 30 years. We analyse three traits that have been hypothesized to respond to different environmental drivers (increase in moisture stress and atmospheric CO2 concentrations): maximum tree size, biogeographic water-deficit affiliation and wood density. Tree communities have become increasingly dominated by large-statured taxa, but to date there has been no detectable change in mean wood density or water deficit affiliation at the community level, despite most forest plots having experienced an intensification of the dry season. However, among newly recruited trees, dry-affiliated genera have become more abundant, while the mortality of wet-affiliated genera has increased in those plots where the dry season has intensified most. Thus, a slow shift to a more dry-affiliated Amazonia is underway, with changes in compositional dynamics (recruits and mortality) consistent with climate-change drivers, but yet to significantly impact whole-community composition. The Amazon observational record suggests that the increase in atmospheric CO2 is driving a shift within tree communities to large-statured species and that climate changes to date will impact forest composition, but long generation times of tropical trees mean that biodiversity change is lagging behind climate change.
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26
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Endara MJ, Nicholls JA, Coley PD, Forrister DL, Younkin GC, Dexter KG, Kidner CA, Pennington RT, Stone GN, Kursar TA. Tracking of Host Defenses and Phylogeny During the Radiation of Neotropical Inga-Feeding Sawflies (Hymenoptera; Argidae). Front Plant Sci 2018; 9:1237. [PMID: 30190723 PMCID: PMC6116116 DOI: 10.3389/fpls.2018.01237] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2018] [Accepted: 08/06/2018] [Indexed: 06/08/2023]
Abstract
Coevolutionary theory has long predicted that the arms race between plants and herbivores is a major driver of host selection and diversification. At a local scale, plant defenses contribute significantly to the structure of herbivore assemblages and the high alpha diversity of plants in tropical rain forests. However, the general importance of plant defenses in host associations and divergence at regional scales remains unclear. Here, we examine the role of plant defensive traits and phylogeny in the evolution of host range and species divergence in leaf-feeding sawflies of the family Argidae associated with Neotropical trees in the genus Inga throughout the Amazon, the Guiana Shield and Panama. Our analyses show that the phylogenies of both the sawfly herbivores and their Inga hosts are congruent, and that sawflies radiated at approximately the same time, or more recently than their Inga hosts. Analyses controlling for phylogenetic effects show that the evolution of host use in the sawflies associated with Inga is better correlated with Inga chemistry than with Inga phylogeny, suggesting a pattern of delayed host tracking closely tied to host chemistry. Finally, phylogenetic analyses show that sister species of Inga-sawflies are dispersed across the Neotropics, suggesting a role for allopatric divergence and vicariance in Inga diversification. These results are consistent with the idea that host defensive traits play a key role not only in structuring the herbivore assemblages at a single site, but also in the processes shaping host association and species divergence at a regional scale.
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Affiliation(s)
- María-José Endara
- Department of Biology, The University of Utah, Salt Lake City, UT, United States
- Centro de Investigación de la Biodiversidad y Cambio Climático (BioCamb) e Ingeniería en Biodiversidad y Recursos Genéticos, Facultad de Ciencias de Medio Ambiente, Universidad Tecnológica Indoamérica, Quito, Ecuador
| | - James A. Nicholls
- Ashworth Laboratories, Institute of Evolutionary Biology, School of Biological Sciences, The University of Edinburgh, Edinburgh, United Kingdom
| | - Phyllis D. Coley
- Department of Biology, The University of Utah, Salt Lake City, UT, United States
- Smithsonian Tropical Research Institute, Panama City, Panama
| | - Dale L. Forrister
- Department of Biology, The University of Utah, Salt Lake City, UT, United States
| | - Gordon C. Younkin
- Department of Biology, The University of Utah, Salt Lake City, UT, United States
| | - Kyle G. Dexter
- Royal Botanic Garden Edinburgh, Edinburgh, United Kingdom
- School of GeoSciences, The University of Edinburgh, Edinburgh, United Kingdom
| | - Catherine A. Kidner
- Ashworth Laboratories, Institute of Evolutionary Biology, School of Biological Sciences, The University of Edinburgh, Edinburgh, United Kingdom
- Royal Botanic Garden Edinburgh, Edinburgh, United Kingdom
| | | | - Graham N. Stone
- Ashworth Laboratories, Institute of Evolutionary Biology, School of Biological Sciences, The University of Edinburgh, Edinburgh, United Kingdom
| | - Thomas A. Kursar
- Department of Biology, The University of Utah, Salt Lake City, UT, United States
- Smithsonian Tropical Research Institute, Panama City, Panama
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27
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Dexter KG, Pennington RT, Oliveira-Filho AT, Bueno ML, Silva de Miranda PL, Neves DM. Inserting Tropical Dry Forests Into the Discussion on Biome Transitions in the Tropics. Front Ecol Evol 2018. [DOI: 10.3389/fevo.2018.00104] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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28
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Endara MJ, Coley PD, Wiggins NL, Forrister DL, Younkin GC, Nicholls JA, Pennington RT, Dexter KG, Kidner CA, Stone GN, Kursar TA. Chemocoding as an identification tool where morphological- and DNA-based methods fall short: Inga as a case study. New Phytol 2018; 218:847-858. [PMID: 29436716 DOI: 10.1111/nph.15020] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2017] [Accepted: 01/04/2018] [Indexed: 05/12/2023]
Abstract
The need for species identification and taxonomic discovery has led to the development of innovative technologies for large-scale plant identification. DNA barcoding has been useful, but fails to distinguish among many species in species-rich plant genera, particularly in tropical regions. Here, we show that chemical fingerprinting, or 'chemocoding', has great potential for plant identification in challenging tropical biomes. Using untargeted metabolomics in combination with multivariate analysis, we constructed species-level fingerprints, which we define as chemocoding. We evaluated the utility of chemocoding with species that were defined morphologically and subject to next-generation DNA sequencing in the diverse and recently radiated neotropical genus Inga (Leguminosae), both at single study sites and across broad geographic scales. Our results show that chemocoding is a robust method for distinguishing morphologically similar species at a single site and for identifying widespread species across continental-scale ranges. Given that species are the fundamental unit of analysis for conservation and biodiversity research, the development of accurate identification methods is essential. We suggest that chemocoding will be a valuable additional source of data for a quick identification of plants, especially for groups where other methods fall short.
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Affiliation(s)
- María-José Endara
- Department of Biology, University of Utah, Salt Lake City, UT, 84112-0840, USA
- Centro de Investigación de la Biodiversidad y Cambio Climático (BioCamb) e Ingeniería en Biodiversidad y Recursos Genéticos, Facultad de Ciencias de Medio Ambiente, Universidad Tecnológica Indoamérica, Quito, EC170103, Ecuador
| | - Phyllis D Coley
- Department of Biology, University of Utah, Salt Lake City, UT, 84112-0840, USA
- Smithsonian Tropical Research Institute, Box 0843-03092, Balboa, Ancón, Republic of Panamá
| | - Natasha L Wiggins
- School of Biological Sciences, University of Tasmania, Sandy Bay, TAS, 7001, Australia
| | - Dale L Forrister
- Department of Biology, University of Utah, Salt Lake City, UT, 84112-0840, USA
| | - Gordon C Younkin
- Department of Biology, University of Utah, Salt Lake City, UT, 84112-0840, USA
| | - James A Nicholls
- Ashworth Labs, Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JY, UK
| | | | - Kyle G Dexter
- Royal Botanic Garden Edinburgh, Edinburgh, EH3 5LR, UK
- School of GeoSciences, University of Edinburgh, Edinburgh, EH9 3FF, UK
| | - Catherine A Kidner
- Ashworth Labs, Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JY, UK
- Royal Botanic Garden Edinburgh, Edinburgh, EH3 5LR, UK
| | - Graham N Stone
- Ashworth Labs, Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JY, UK
| | - Thomas A Kursar
- Department of Biology, University of Utah, Salt Lake City, UT, 84112-0840, USA
- Smithsonian Tropical Research Institute, Box 0843-03092, Balboa, Ancón, Republic of Panamá
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Gomes VHF, IJff SD, Raes N, Amaral IL, Salomão RP, de Souza Coelho L, de Almeida Matos FD, Castilho CV, de Andrade Lima Filho D, López DC, Guevara JE, Magnusson WE, Phillips OL, Wittmann F, de Jesus Veiga Carim M, Martins MP, Irume MV, Sabatier D, Molino JF, Bánki OS, da Silva Guimarães JR, Pitman NCA, Piedade MTF, Mendoza AM, Luize BG, Venticinque EM, de Leão Novo EMM, Vargas PN, Silva TSF, Manzatto AG, Terborgh J, Reis NFC, Montero JC, Casula KR, Marimon BS, Marimon BH, Coronado ENH, Feldpausch TR, Duque A, Zartman CE, Arboleda NC, Killeen TJ, Mostacedo B, Vasquez R, Schöngart J, Assis RL, Medeiros MB, Simon MF, Andrade A, Laurance WF, Camargo JL, Demarchi LO, Laurance SGW, de Sousa Farias E, Nascimento HEM, Revilla JDC, Quaresma A, Costa FRC, Vieira ICG, Cintra BBL, Castellanos H, Brienen R, Stevenson PR, Feitosa Y, Duivenvoorden JF, Aymard C GA, Mogollón HF, Targhetta N, Comiskey JA, Vicentini A, Lopes A, Damasco G, Dávila N, García-Villacorta R, Levis C, Schietti J, Souza P, Emilio T, Alonso A, Neill D, Dallmeier F, Ferreira LV, Araujo-Murakami A, Praia D, do Amaral DD, Carvalho FA, de Souza FC, Feeley K, Arroyo L, Pansonato MP, Gribel R, Villa B, Licona JC, Fine PVA, Cerón C, Baraloto C, Jimenez EM, Stropp J, Engel J, Silveira M, Mora MCP, Petronelli P, Maas P, Thomas-Caesar R, Henkel TW, Daly D, Paredes MR, Baker TR, Fuentes A, Peres CA, Chave J, Pena JLM, Dexter KG, Silman MR, Jørgensen PM, Pennington T, Di Fiore A, Valverde FC, Phillips JF, Rivas-Torres G, von Hildebrand P, van Andel TR, Ruschel AR, Prieto A, Rudas A, Hoffman B, Vela CIA, Barbosa EM, Zent EL, Gonzales GPG, Doza HPD, de Andrade Miranda IP, Guillaumet JL, Pinto LFM, de Matos Bonates LC, Silva N, Gómez RZ, Zent S, Gonzales T, Vos VA, Malhi Y, Oliveira AA, Cano A, Albuquerque BW, Vriesendorp C, Correa DF, Torre EV, van der Heijden G, Ramirez-Angulo H, Ramos JF, Young KR, Rocha M, Nascimento MT, Medina MNU, Tirado M, Wang O, Sierra R, Torres-Lezama A, Mendoza C, Ferreira C, Baider C, Villarroel D, Balslev H, Mesones I, Giraldo LEU, Casas LF, Reategui MAA, Linares-Palomino R, Zagt R, Cárdenas S, Farfan-Rios W, Sampaio AF, Pauletto D, Sandoval EHV, Arevalo FR, Huamantupa-Chuquimaco I, Garcia-Cabrera K, Hernandez L, Gamarra LV, Alexiades MN, Pansini S, Cuenca WP, Milliken W, Ricardo J, Lopez-Gonzalez G, Pos E, Ter Steege H. Species Distribution Modelling: Contrasting presence-only models with plot abundance data. Sci Rep 2018; 8:1003. [PMID: 29343741 PMCID: PMC5772443 DOI: 10.1038/s41598-017-18927-1] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Accepted: 12/20/2017] [Indexed: 11/29/2022] Open
Abstract
Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and MaxEnt predictions relates to a spatial abundance model, based on a large plot dataset for Amazonian tree species, using inverse distance weighting (IDW). We also propose a new pipeline to deal with inconsistencies in NHCs and to limit the area of occupancy of the species. We found a significant but weak positive relationship between the distribution of NHCs and IDW for 66% of the species. The relationship between SDMs and IDW was also significant but weakly positive for 95% of the species, and sensitivity for both analyses was high. Furthermore, the pipeline removed half of the NHCs records. Presence-only SDM applications should consider this limitation, especially for large biodiversity assessments projects, when they are automatically generated without subsequent checking. Our pipeline provides a conservative estimate of a species’ area of occupancy, within an area slightly larger than its extent of occurrence, compatible to e.g. IUCN red list assessments.
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Affiliation(s)
- Vitor H F Gomes
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040-170, Brazil.,Programa de Pós-Graduação em Ciência Ambientais, Universidade Federal do Pará, Rua Augusto Corrêa 01, Belém, PA, 66075-110, Brazil
| | - Stéphanie D IJff
- Biodiversity Dynamics, Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands.,Marine and Coastal Management, Deltares, Boussinesqweg 1, Delft, 2629 HV, The Netherlands
| | - Niels Raes
- Biodiversity Dynamics, Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands
| | - Iêda Leão Amaral
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Rafael P Salomão
- Programa de Pós-Graduação em Ciência Ambientais, Universidade Federal do Pará, Rua Augusto Corrêa 01, Belém, PA, 66075-110, Brazil
| | - Luiz de Souza Coelho
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Francisca Dionízia de Almeida Matos
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Carolina V Castilho
- EMBRAPA - Centro de Pesquisa Agroflorestal de Roraima, BR 174 km 8, Distrito Industrial, Boa Vista, RR, 69301-970, Brazil
| | - Diogenes de Andrade Lima Filho
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Dairon Cárdenas López
- Herbario Amazónico Colombiano, Instituto SINCHI, Calle 20 No 5-44, Bogotá, DC, Colombia
| | - Juan Ernesto Guevara
- Department of Integrative Biology University of California, Berkeley, CA, 94720-3140, USA.,Universidad San Francisco de Quito, Colegio de Ciencias Biológicas, Diego de Robles y Vía Interoceánica, Quito, Pichincha, Ecuador
| | - William E Magnusson
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Oliver L Phillips
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Florian Wittmann
- Department of Wetland Ecology, Institute of Geography and Geoecology, Karlsruhe Institute of Technology - KIT, Josefstr 1, Rastatt, D-76437, Germany.,Biogeochemistry, Max Planck Institute for Chemistry, Hahn-Meitner Weg 1, Mainz, 55128, Germany
| | - Marcelo de Jesus Veiga Carim
- Departamento de Botânica, Instituto de Pesquisas Científicas e Tecnológicas do Amapá - IEPA, Rodovia JK Km 10, Campus do IEPA da Fazendinha, Amapá, 68901-025, Brazil
| | - Maria Pires Martins
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Mariana Victória Irume
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Daniel Sabatier
- AMAP, IRD, Cirad, CNRS, INRA, Université de Montpellier, TA A-51/PS2, Bd. de la Lironde, Montpellier, 34398, France
| | - Jean-François Molino
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Olaf S Bánki
- Biodiversity Dynamics, Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands
| | - José Renan da Silva Guimarães
- Departamento de Botânica, Instituto de Pesquisas Científicas e Tecnológicas do Amapá - IEPA, Rodovia JK Km 10, Campus do IEPA da Fazendinha, Amapá, 68901-025, Brazil
| | - Nigel C A Pitman
- Science and Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL, 60605-2496, USA
| | - Maria Teresa Fernandez Piedade
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | - Bruno Garcia Luize
- Departamento de Ecologia, Universidade Estadual Paulista - UNESP, Instituto de Biociências - IB, Av. 24 A 1515, Bela Vista, Rio Claro, SP, 13506-900, Brazil
| | - Eduardo Martins Venticinque
- Centro de Biociências, Departamento de Ecologia, Universidade Federal do Rio Grande do Norte, Av. Senador Salgado Filho 3000, Natal, RN, 59072-970, Brazil
| | - Evlyn Márcia Moraes de Leão Novo
- Divisao de Sensoriamento Remoto - DSR, Instituto Nacional de Pesquisas Espaciais - INPE, Av. dos Astronautas 1758, Jardim da Granja, São José dos Campos, SP, 12227-010, Brazil
| | - Percy Núñez Vargas
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Avenida de la Cultura, Nro 733, Cusco, Cuzco, Peru
| | - Thiago Sanna Freire Silva
- Departamento de Geografia, Universidade Estadual Paulista - UNESP, Instituto de Geociências e Ciências Extas - IGCE, Bela Vista, Rio Claro, SP, 13506-900, Brazil
| | - Angelo Gilberto Manzatto
- Departamento de Biologia, Universidade Federal de Rondônia, Rodovia BR 364 s/n Km 9.5, Rural, Porto Velho, RO, 76.824-027, Brazil
| | - John Terborgh
- Center for Tropical Conservation, Duke University, Nicholas School of the Environment, Durham, NC, 27708, USA
| | - Neidiane Farias Costa Reis
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia - PPG-Bionorte, Universidade Federal de Rondônia, Campus Porto Velho, Km 9.5, Rural, Porto Velho, RO, 76.824-027, Brazil
| | - Juan Carlos Montero
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil.,Instituto Boliviano de Investigacion Forestal, Av. 6 de agosto 28 Km 14, Doble via La Guardia Casilla, 6204, Santa Cruz, Santa Cruz, Bolivia
| | - Katia Regina Casula
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia - PPG-Bionorte, Universidade Federal de Rondônia, Campus Porto Velho, Km 9.5, Rural, Porto Velho, RO, 76.824-027, Brazil
| | - Beatriz S Marimon
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, MT, Brazil
| | - Ben-Hur Marimon
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, MT, Brazil
| | - Euridice N Honorio Coronado
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK.,Instituto de Investigaciones de la Amazonía Peruana - IIAP, Av. A. Quiñones km 2.5, Iquitos, Loreto, 784, Peru
| | - Ted R Feldpausch
- Geography College of Life and Environmental Sciences, University of Exeter, Exeter, EX4 4RJ, UK
| | - Alvaro Duque
- Departamento de Ciencias Forestales, Universidad Nacional de Colombia, Calle 64 x Cra 65, Medellín, Antioquia, 1027, Colombia
| | - Charles Eugene Zartman
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | | | | | - Bonifacio Mostacedo
- Facultad de Ciencias Agrícolas Universidad Autónoma Gabriel René Moreno Santa Cruz, Santa Cruz, Bolivia
| | | | - Jochen Schöngart
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Rafael L Assis
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Marcelo Brilhante Medeiros
- Prédio da Botânica e Ecologia Embrapa Recursos Genéticos e Biotecnologia Parque Estação Biológica, Av. W5 Norte, Brasilia, DF, 70770-917, Brazil
| | - Marcelo Fragomeni Simon
- Prédio da Botânica e Ecologia Embrapa Recursos Genéticos e Biotecnologia Parque Estação Biológica, Av. W5 Norte, Brasilia, DF, 70770-917, Brazil
| | - Ana Andrade
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - William F Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering James Cook University, Cairns, Queensland, 4870, Australia
| | - José Luís Camargo
- Projeto Dinâmica Biológica de Fragmentos Florestais, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Layon O Demarchi
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Susan G W Laurance
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering James Cook University, Cairns, Queensland, 4870, Australia
| | - Emanuelle de Sousa Farias
- Laboratório de Ecologia de Doenças Transmissíveis da Amazônia (EDTA), Instituto Leônidas e Maria Deane, Fiocruz, Rua Terezina 476, Adrianópolis, Manaus, AM, 69060-001, Brazil.,Programa de Pós-graduação em Biodiversidade e Saúde Instituto Oswaldo Cruz - IOC/FIOCRUZ Pav. Arthur Neiva - Térreo Av. Brasil 4365 - Manguinhos, Rio de Janeiro, RJ, 21040-360, Brazil
| | - Henrique Eduardo Mendonça Nascimento
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Juan David Cardenas Revilla
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Adriano Quaresma
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Flavia R C Costa
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Ima Célia Guimarães Vieira
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040-170, Brazil
| | - Bruno Barçante Ladvocat Cintra
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK.,Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Hernán Castellanos
- Centro de Investigaciones Ecológicas de Guayana Universidad Nacional Experimental de Guayana, Calle Chile, urbaniz Chilemex, Puerto Ordaz, Bolivar, Venezuela
| | - Roel Brienen
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Pablo R Stevenson
- Laboratorio de Ecología de Bosques Tropicales y Primatología Universidad de los Andes Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
| | - Yuri Feitosa
- Programa de Pós-Graduação em Biologia (Botânica) Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Joost F Duivenvoorden
- Institute of Biodiversity and Ecosystem Dynamics University of Amsterdam, Sciencepark 904, Amsterdam, 1098 XH, The Netherlands
| | - Gerardo A Aymard C
- Programa de Ciencias del Agro y el Mar Herbario Universitario (PORT) UNELLEZ-Guanare, Guanare, Portuguesa, 3350, Venezuela
| | - Hugo F Mogollón
- Endangered Species Coalition, 8530 Geren Rd, Silver Spring, MD, 20901, USA
| | - Natalia Targhetta
- MAUA Working Group Instituto Nacional de Pesquisas da Amazônia - INPA Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - James A Comiskey
- Inventory and Monitoring Program National Park Service 120 Chatham Lane, Fredericksburg, VA, 22405, USA.,Center for Conservation Education and Sustainability Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - Alberto Vicentini
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Aline Lopes
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Gabriel Damasco
- Department of Integrative Biology University of California, Berkeley, CA, 94720-3140, USA
| | - Nállarett Dávila
- Biologia Vegetal, Universidade Estadual de Campinas, Caixa Postal 6109, Campinas, SP, 13.083-970, Brazil
| | - Roosevelt García-Villacorta
- Institute of Molecular Plant Sciences University of Edinburgh, Mayfield Rd, Edinburgh, EH3 5LR, UK.,Royal Botanic Garden Edinburgh 20a Inverleith Row, Edinburgh, Scotland, EH3 5LR, UK
| | - Carolina Levis
- Programa de Pós-Graduação em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil.,Forest Ecology and Forest Management Group Wageningen University Wageningen University & Research, Droevendaalsesteeg 3, Wageningen, P.O. Box 47, 6700 AA, The Netherlands
| | - Juliana Schietti
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Priscila Souza
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Thaise Emilio
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil.,Natural Capital and Plant Health Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK
| | - Alfonso Alonso
- Center for Conservation Education and Sustainability Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - David Neill
- Ecosistemas Biodiversidad y Conservación de Especies Universidad Estatal Amazónica, Km. 2 1/2 vía a Tena (Paso Lateral), Puyo, Pastaza, Ecuador
| | - Francisco Dallmeier
- Center for Conservation Education and Sustainability Smithsonian Conservation Biology Institute, 1100 Jefferson Dr. SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - Leandro Valle Ferreira
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040-170, Brazil
| | - Alejandro Araujo-Murakami
- Museo de Historia Natural Noel Kempff Mercado Universidad Autónoma Gabriel Rene Moreno, Avenida Irala 565 Casilla Postal 2489, Santa Cruz, Santa Cruz, Bolivia
| | - Daniel Praia
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Dário Dantas do Amaral
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Av. Magalhães Barata 376, C.P. 399, Belém, PA, 66040-170, Brazil
| | - Fernanda Antunes Carvalho
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil.,Centro de Biociências, Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Campus Universitário, Lagoa Nova, Natal, RN, 59078-970, Brazil
| | - Fernanda Coelho de Souza
- Coordenação de Pesquisas em Ecologia, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil.,School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Kenneth Feeley
- Department of Biology University of Miami Coral, Gables, FL, 33146, USA.,Fairchild Tropical Botanic Garden Coral, Gables, FL, 33156, USA
| | - Luzmila Arroyo
- Museo de Historia Natural Noel Kempff Mercado Universidad Autónoma Gabriel Rene Moreno, Avenida Irala 565 Casilla Postal 2489, Santa Cruz, Santa Cruz, Bolivia
| | - Marcelo Petratti Pansonato
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil.,Instituto de Biociências - Dept. Ecologia, Universidade de Sao Paulo - USP, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP, 05508-090, Brazil
| | - Rogerio Gribel
- Diretoria de Pesquisas Científicas, Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | - Boris Villa
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Juan Carlos Licona
- Instituto Boliviano de Investigacion Forestal, Av. 6 de agosto 28 Km 14, Doble via La Guardia Casilla, 6204, Santa Cruz, Santa Cruz, Bolivia
| | - Paul V A Fine
- Department of Integrative Biology University of California, Berkeley, CA, 94720-3140, USA
| | - Carlos Cerón
- Escuela de Biología Herbario Alfredo Paredes Universidad Central, Ap. Postal 17.01.2177, Quito, Pichincha, Ecuador
| | - Chris Baraloto
- International Center for Tropical Botany (ICTB) Department of Biological Sciences Florida International University, 11200 SW 8th Street, OE 243, Miami, FL, 33199, USA
| | - Eliana M Jimenez
- Grupo de Ecología de Ecosistemas Terrestres Tropicales, Universidad Nacional de Colombia Sede Amazonía, Leticia, Amazonas, Colombia
| | - Juliana Stropp
- Institute of Biological and Health Sciences, Federal University of Alagoas, Av. Lourival Melo Mota, s/n, Tabuleiro do Martins, Maceio, AL, 57072-970, Brazil
| | - Julien Engel
- AMAP, IRD, Cirad, CNRS, INRA, Université de Montpellier, TA A-51/PS2, Bd. de la Lironde, Montpellier, 34398, France.,International Center for Tropical Botany (ICTB) Department of Biological Sciences Florida International University, 11200 SW 8th Street, OE 243, Miami, FL, 33199, USA
| | - Marcos Silveira
- Museu Universitário/Centro de Ciências Biológicas e da Natureza/Laboratório de Botânica e Ecologia Vegetal, Universidade Federal do Acre, Rio Branco, AC, 69915-559, Brazil
| | | | - Pascal Petronelli
- Cirad UMR Ecofog AgrosParisTech CNRS INRA Univ Guyane, Campus agronomique, Kourou Cedex, 97379, France
| | - Paul Maas
- Biodiversity Dynamics, Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands
| | - Raquel Thomas-Caesar
- Iwokrama International Programme for Rainforest Conservation, Georgetown, Guyana
| | - Terry W Henkel
- Department of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA, 95521, USA
| | - Doug Daly
- New York Botanical Garden 2900 Southern Blvd, Bronx, New York, NY, 10458-5126, USA
| | - Marcos Ríos Paredes
- Servicios de Biodiversidad EIRL, Jr. Independencia 405, Iquitos, Loreto, 784, Peru
| | - Tim R Baker
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Alfredo Fuentes
- Herbario Nacional de Bolivia, Universitario UMSA, Casilla 10077 Correo Central, La Paz, La Paz, Bolivia.,Missouri Botanical Garden, P.O. Box 299, St. Louis, MO, 63166-0299, USA
| | - Carlos A Peres
- School of Environmental Sciences, University of East Anglia, Norwich, NR4 7TJ, UK
| | - Jerome Chave
- Laboratoire Evolution et Diversité Biologique CNRS and Université Paul Sabatier UMR 5174 EDB, Toulouse, 31000, France
| | - Jose Luis Marcelo Pena
- Department of Forestry Management, Universidad Nacional Agraria La Molina, Avenido La Molina, Apdo. 456, La Molina, Lima, Peru
| | - Kyle G Dexter
- Royal Botanic Garden Edinburgh 20a Inverleith Row, Edinburgh, Scotland, EH3 5LR, UK.,School of Geosciences University of Edinburgh, 201 Crew Building, King's Buildings, Edinburgh, EH9 3JN, UK
| | - Miles R Silman
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, 1834 Wake Forest Rd, Winston Salem, NC, 27106, USA
| | | | - Toby Pennington
- Royal Botanic Garden Edinburgh 20a Inverleith Row, Edinburgh, Scotland, EH3 5LR, UK
| | - Anthony Di Fiore
- Department of Anthropology University of Texas at Austin, SAC 5.150, 2201 Speedway Stop C3200, Austin, TX, 78712, USA
| | | | | | - Gonzalo Rivas-Torres
- Colegio de Ciencias Biológicas y Ambientales-COCIBA & Galapagos Institute for the Arts and Sciences-GAIAS, Universidad San Francisco de Quito-USFQ, Quito, Pichincha, Ecuador.,Department of Wildlife Ecology and Conservation University of Florida, 110 Newins-Ziegler Hall, Gainesville, FL, 32611, USA
| | | | - Tinde R van Andel
- Biodiversity Dynamics, Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands
| | - Ademir R Ruschel
- Embrapa Amazônia Oriental, Trav. Dr. Enéas Pinheiro s/nº, Belém, PA, 66095-100, Brazil
| | - Adriana Prieto
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Apartado, 7945, Bogotá, DC, Colombia
| | - Agustín Rudas
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Apartado, 7945, Bogotá, DC, Colombia
| | - Bruce Hoffman
- Amazon Conservation Team, Doekhieweg Oost #24, Paramaribo, Suriname
| | - César I A Vela
- Facultad de Ciencias Forestales y Medio Ambiente, Universidad Nacional de San Antonio Abad del Cusco, Jirón San Martín 451, Puerto Maldonado, Madre de Dios, Peru
| | - Edelcilio Marques Barbosa
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Egleé L Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas - IVIC, Ado 20632, Caracas, Caracas, 1020A, Venezuela
| | | | | | - Ires Paula de Andrade Miranda
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Jean-Louis Guillaumet
- Departement EV, Muséum national d'histoire naturelle de Paris, 16 rue Buffon, Paris, 75005, France
| | | | - Luiz Carlos de Matos Bonates
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Natalino Silva
- Instituto de Ciência Agrárias, Universidade Federal Rural da Amazônia, Av. Presidente Tancredo Neves 2501, Belém, PA, 66.077-901, Brazil
| | - Ricardo Zárate Gómez
- PROTERRA, Instituto de Investigaciones de la Amazonía Peruana (IIAP), Av. A. Quiñones km 2 5, Iquitos, Loreto, 784, Peru
| | - Stanford Zent
- Laboratory of Human Ecology, Instituto Venezolano de Investigaciones Científicas - IVIC, Ado 20632, Caracas, Caracas, 1020A, Venezuela
| | - Therany Gonzales
- ACEER Foundation, Jirón Cusco N° 370, Puerto Maldonado, Madre de Dios, Peru
| | - Vincent A Vos
- Universidad Autónoma del Beni José Ballivián, Campus Universitario Final Av. Ejercito, Riberalta, Beni, Bolivia.,Regional Norte Amazónico, Centro de Investigación y Promoción del Campesinado, C/Nicanor Gonzalo Salvatierra N° 362, Riberalta, Beni, Bolivia
| | - Yadvinder Malhi
- Environmental Change Institute, Oxford University Centre for the Environment, Dyson Perrins Building, South Parks Road, Oxford, England, OX1 3QY, UK
| | - Alexandre A Oliveira
- Instituto de Biociências - Dept. Ecologia, Universidade de Sao Paulo - USP, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP, 05508-090, Brazil
| | - Angela Cano
- Laboratorio de Ecología de Bosques Tropicales y Primatología Universidad de los Andes Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
| | - Bianca Weiss Albuquerque
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Corine Vriesendorp
- Science and Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL, 60605-2496, USA
| | - Diego Felipe Correa
- Laboratorio de Ecología de Bosques Tropicales y Primatología Universidad de los Andes Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia.,School of Agriculture and Food Sciences - ARC Centre of Excellence for Environmental Decisions CEED, The University of Queensland, St. Lucia, QLD 4072, Australia
| | - Emilio Vilanova Torre
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Conjunto Forestal, C.P. 5101, Mérida, Mérida, Venezuela.,School of Environmental and Forest Sciences, University of Washington, Seattle, WA, 98195-2100, USA
| | | | - Hirma Ramirez-Angulo
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Conjunto Forestal, C.P. 5101, Mérida, Mérida, Venezuela
| | - José Ferreira Ramos
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Kenneth R Young
- Geography and the Environment, University of Texas at Austin, 305 E. 23rd Street, CLA building, Austin, TX, 78712, USA
| | - Maira Rocha
- Coordenação de Dinâmica Ambiental, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Marcelo Trindade Nascimento
- Laboratório de Ciências Ambientais, Universidade Estadual do Norte Fluminense, Av. Alberto Lamego 2000, Campos dos Goyatacazes, RJ, 28013-620, Brazil
| | - Maria Natalia Umaña Medina
- Laboratorio de Ecología de Bosques Tropicales y Primatología Universidad de los Andes Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia.,Department of Biology, University of Maryland, College Park, MD, 20742, USA
| | - Milton Tirado
- GeoIS, El Día 369 y El Telégrafo, 3° Piso, Quito, Pichincha, Ecuador
| | - Ophelia Wang
- Environmental Science and Policy, Northern Arizona University, Flagstaff, AZ, 86011, USA
| | - Rodrigo Sierra
- GeoIS, El Día 369 y El Telégrafo, 3° Piso, Quito, Pichincha, Ecuador
| | - Armando Torres-Lezama
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Universidad de los Andes, Conjunto Forestal, C.P. 5101, Mérida, Mérida, Venezuela
| | - Casimiro Mendoza
- FOMABO, Manejo Forestal en las Tierras Tropicales de Bolivia, Sacta, Cochabamba, Bolivia.,Escuela de Ciencias Forestales (ESFOR), Universidad Mayor de San Simon (UMSS), Sacta, Cochabamba, Bolivia
| | - Cid Ferreira
- Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia - INPA, Av. André Araújo 2936, Petrópolis, Manaus, AM, 69067-375, Brazil
| | - Cláudia Baider
- Agricultural Services, Ministry of Agro-Industry and Food Security, Agricultural Services, Ministry of Agro-Industry and Food Security, The Mauritius Herbarium, Reduit, Mauritius
| | - Daniel Villarroel
- Museo de Historia Natural Noel Kempff Mercado Universidad Autónoma Gabriel Rene Moreno, Avenida Irala 565 Casilla Postal 2489, Santa Cruz, Santa Cruz, Bolivia
| | - Henrik Balslev
- Department of Bioscience, Aarhus University, Building 1540 Ny Munkegade, Aarhus C, Aarhus, DK-8000, Denmark
| | - Italo Mesones
- Department of Integrative Biology University of California, Berkeley, CA, 94720-3140, USA
| | - Ligia Estela Urrego Giraldo
- Departamento de Ciencias Forestales, Universidad Nacional de Colombia, Calle 64 x Cra 65, Medellín, Antioquia, 1027, Colombia
| | - Luisa Fernanda Casas
- Ciencias Biológicas, Universidad de Los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
| | | | - Reynaldo Linares-Palomino
- Center for Conservation Education and Sustainability, Smithsonian's National Zoo & Conservation Biology Institute, National Zoological Park, 3001 Connecticut Ave, Washington, DC, 20008, USA
| | - Roderick Zagt
- Tropenbos International, Lawickse Allee 11 PO Box 232, Wageningen, 6700 AE, The Netherlands
| | - Sasha Cárdenas
- Ciencias Biológicas, Universidad de Los Andes, Carrera 1 # 18a- 10, Bogotá, DC, 111711, Colombia
| | - William Farfan-Rios
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, 1834 Wake Forest Rd, Winston Salem, NC, 27106, USA
| | - Adeilza Felipe Sampaio
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia - PPG-Bionorte, Universidade Federal de Rondônia, Campus Porto Velho, Km 9.5, Rural, Porto Velho, RO, 76.824-027, Brazil
| | - Daniela Pauletto
- Instituto de Biodiversidade e Floresta, Universidade Federal do Oeste do Pará, Rua Vera Paz, Campus Tapajós, Santarém, PA, 68015-110, Brazil
| | - Elvis H Valderrama Sandoval
- Department of Biology, University of Missouri, St. Louis, MO, 63121, USA.,Facultad de Biologia, Universidad Nacional de la Amazonia Peruana, Pevas 5ta cdra, Iquitos, Loreto, Peru
| | - Freddy Ramirez Arevalo
- Facultad de Biologia, Universidad Nacional de la Amazonia Peruana, Pevas 5ta cdra, Iquitos, Loreto, Peru
| | - Isau Huamantupa-Chuquimaco
- Herbario Vargas, Universidad Nacional de San Antonio Abad del Cusco, Avenida de la Cultura, Nro 733, Cusco, Cuzco, Peru
| | - Karina Garcia-Cabrera
- Biology Department and Center for Energy, Environment and Sustainability, Wake Forest University, 1834 Wake Forest Rd, Winston Salem, NC, 27106, USA
| | - Lionel Hernandez
- Centro de Investigaciones Ecológicas de Guayana Universidad Nacional Experimental de Guayana, Calle Chile, urbaniz Chilemex, Puerto Ordaz, Bolivar, Venezuela
| | | | - Miguel N Alexiades
- School of Anthropology and Conservation, University of Kent, Marlowe Building, Canterbury, Kent, CT2 7NR, UK
| | - Susamar Pansini
- Programa de Pós-Graduação em Biodiversidade e Biotecnologia - PPG-Bionorte, Universidade Federal de Rondônia, Campus Porto Velho, Km 9.5, Rural, Porto Velho, RO, 76.824-027, Brazil
| | | | - William Milliken
- Natural Capital and Plant Health Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK
| | - Joana Ricardo
- School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | | | - Edwin Pos
- Biodiversity Dynamics, Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands.,Ecology & Biodiversity Group, Utrecht University, Padualaan 8, Utrecht, 3584 CH, The Netherlands
| | - Hans Ter Steege
- Biodiversity Dynamics, Naturalis Biodiversity Center, PO Box 9517, Leiden, 2300 RA, The Netherlands. .,Systems Ecology, Free University, De Boelelaan 1087, Amsterdam, 1081 HV, Netherlands.
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30
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Coelho de Souza F, Dexter KG, Phillips OL, Brienen RJW, Chave J, Galbraith DR, Lopez Gonzalez G, Monteagudo Mendoza A, Pennington RT, Poorter L, Alexiades M, Álvarez-Dávila E, Andrade A, Aragão LEOC, Araujo-Murakami A, Arets EJMM, Aymard C GA, Baraloto C, Barroso JG, Bonal D, Boot RGA, Camargo JLC, Comiskey JA, Valverde FC, de Camargo PB, Di Fiore A, Elias F, Erwin TL, Feldpausch TR, Ferreira L, Fyllas NM, Gloor E, Herault B, Herrera R, Higuchi N, Honorio Coronado EN, Killeen TJ, Laurance WF, Laurance S, Lloyd J, Lovejoy TE, Malhi Y, Maracahipes L, Marimon BS, Marimon-Junior BH, Mendoza C, Morandi P, Neill DA, Vargas PN, Oliveira EA, Lenza E, Palacios WA, Peñuela-Mora MC, Pipoly JJ, Pitman NCA, Prieto A, Quesada CA, Ramirez-Angulo H, Rudas A, Ruokolainen K, Salomão RP, Silveira M, Stropp J, Ter Steege H, Thomas-Caesar R, van der Hout P, van der Heijden GMF, van der Meer PJ, Vasquez RV, Vieira SA, Vilanova E, Vos VA, Wang O, Young KR, Zagt RJ, Baker TR. Evolutionary heritage influences Amazon tree ecology. Proc Biol Sci 2017; 283:rspb.2016.1587. [PMID: 27974517 PMCID: PMC5204144 DOI: 10.1098/rspb.2016.1587] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2016] [Accepted: 11/03/2016] [Indexed: 12/03/2022] Open
Abstract
Lineages tend to retain ecological characteristics of their ancestors through time. However, for some traits, selection during evolutionary history may have also played a role in determining trait values. To address the relative importance of these processes requires large-scale quantification of traits and evolutionary relationships among species. The Amazonian tree flora comprises a high diversity of angiosperm lineages and species with widely differing life-history characteristics, providing an excellent system to investigate the combined influences of evolutionary heritage and selection in determining trait variation. We used trait data related to the major axes of life-history variation among tropical trees (e.g. growth and mortality rates) from 577 inventory plots in closed-canopy forest, mapped onto a phylogenetic hypothesis spanning more than 300 genera including all major angiosperm clades to test for evolutionary constraints on traits. We found significant phylogenetic signal (PS) for all traits, consistent with evolutionarily related genera having more similar characteristics than expected by chance. Although there is also evidence for repeated evolution of pioneer and shade tolerant life-history strategies within independent lineages, the existence of significant PS allows clearer predictions of the links between evolutionary diversity, ecosystem function and the response of tropical forests to global change.
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Affiliation(s)
| | - Kyle G Dexter
- School of Geosciences, University of Edinburgh, 201 Crew Building, King's Buildings, Edinburgh EH9 3FF, UK.,Royal Botanic Garden Edinburgh, 20a Inverleith Row, Edinburgh EH3 5LR, UK
| | | | | | - Jerome Chave
- Université Paul Sabatier CNRS, UMR 5174 Evolution et Diversité Biologique, bâtiment 4R1, Toulouse 31062, France
| | | | | | - Abel Monteagudo Mendoza
- Jardín Botánico de Missouri, Prolongacion Bolognesi Mz. E, Lote 6, Oxapampa, Pasco, Peru.,Universidad Nacional de San Antonio Abad del Cusco, Av. de la Cultura N° 733, Cusco, Peru
| | - R Toby Pennington
- Royal Botanic Garden Edinburgh, 20a Inverleith Row, Edinburgh EH3 5LR, UK
| | - Lourens Poorter
- Forest Ecology and Forest Management Group, Wageningen University and Research, PO Box 47, 6700 AA Wageningen, The Netherlands
| | - Miguel Alexiades
- School of Anthropology and Conservation, University of Kent, Marlowe Building, Canterbury, Kent CT2 7NR, UK
| | | | - Ana Andrade
- Biological Dynamics of Forest Fragment Project (INPA & STRI), C.P. 478, Manaus, Amazonas 69.011-970, Brazil
| | - Luis E O C Aragão
- Geography, College of Life and Environmental Sciences, University of Exeter, Drive, Exeter, Rennes EX4 4RJ, UK.,National Institute for Space Research (INPE), São José dos Campos, São Paulo, Brazil
| | - Alejandro Araujo-Murakami
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autonoma Gabriel Rene Moreno, Casilla 2489, Av. Irala 565, Santa Cruz, Bolivia
| | - Eric J M M Arets
- Alterra, Wageningen University and Research Centre, PO Box 47, Wageningen 6700 AA, The Netherlands
| | - Gerardo A Aymard C
- UNELLEZ-Guanare, Programa del Agro y del Mar, Herbario Universitario (PORT), Mesa de Cavacas, Estado Portuguesa 3350, Venezuela
| | - Christopher Baraloto
- International Center for Tropical Botany, Department of Biological Sciences, Florida International University, Miami, FL 33199, USA
| | - Jorcely G Barroso
- Universidade Federal do Acre, Campus de Cruzeiro do Sul, Acre, Brazil
| | - Damien Bonal
- INRA, UMR 1137 'Ecologie et Ecophysiologie Forestiere', Champenoux 54280, France
| | - Rene G A Boot
- Tropenbos International, PO Box 232, Wageningen 6700 AE, The Netherlands
| | - José L C Camargo
- Biological Dynamics of Forest Fragment Project (INPA & STRI), C.P. 478, Manaus, Amazonas 69.011-970, Brazil
| | - James A Comiskey
- National Park Service, 120 Chatham Lane, Fredericksburg, VA 22405, USA.,Smithsonian Institution, 1100 Jefferson Dr, SW, Washington, DC 20560, USA
| | | | - Plínio B de Camargo
- Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, São Paulo, Sao Paulo, Brazil
| | - Anthony Di Fiore
- Department of Anthropology, University of Texas at Austin, SAC Room 5.150, 2201 Speedway Stop C3200, Austin, TX 78712, USA
| | - Fernando Elias
- Universidade do Estado de Mato Grosso, Campus de Nova Xavantina, Caixa Postal 08, 78.690-000, Nova Xavantina, Mato Grosso, Brazil
| | - Terry L Erwin
- Department of Entomology, Smithsonian Institution, PO Box 37012, MRC 187, Washington, DC 20013-7012, USA
| | - Ted R Feldpausch
- Geography, College of Life and Environmental Sciences, University of Exeter, Drive, Exeter, Rennes EX4 4RJ, UK
| | - Leandro Ferreira
- Museu Paraense Emilio Goeldi, C.P. 399, 66.040-170, Belém, Pará, Brazil
| | | | - Emanuel Gloor
- School of Geography, University of Leeds, Leeds LS2 9JT, UK
| | - Bruno Herault
- Cirad, UMR EcoFoG (AgroParisTech, CNRS, Inra, U Antilles, U Guyane), Campus Agronomique, Kourou 97310, French Guiana
| | - Rafael Herrera
- Centro de Ecología IVIC, Caracas, Venezuela.,Institut für Geographie und Regionalforschung, University of Vienna, Wien, Austria
| | - Niro Higuchi
- INPA, Av. André Araújo, 2.936 - Petrópolis - 69.067-375, Manaus, Amazonas, Brazil
| | | | | | - William F Laurance
- Centre for Tropical Environmental and Sustainability Science (TESS) and College of Science and Engineering, James Cook University, Cairns, Queensland 4878, Australia
| | - Susan Laurance
- Centre for Tropical Environmental and Sustainability Science (TESS) and College of Science and Engineering, James Cook University, Cairns, Queensland 4878, Australia
| | - Jon Lloyd
- Department of Life Sciences, Imperial College London, Silwood Park Campus, Buckhurst, Road, Ascot, Berkshire SL5 7PY, UK
| | - Thomas E Lovejoy
- Environmental Science and Policy, and the Department of Public and International Affairs, George Mason University (GMU), Washington, DC, USA
| | - Yadvinder Malhi
- Environmental Change Institute, School of Geography and the Environment, University of Oxford, Oxford, UK
| | - Leandro Maracahipes
- Programa de Pós-graduação em Ecologia e Evolução, Universidade Federal de Goias, Goiânia, Goias, Brazil
| | - Beatriz S Marimon
- Universidade do Estado de Mato Grosso, Campus de Nova Xavantina, Caixa Postal 08, 78.690-000, Nova Xavantina, Mato Grosso, Brazil
| | - Ben H Marimon-Junior
- Universidade do Estado de Mato Grosso, Campus de Nova Xavantina, Caixa Postal 08, 78.690-000, Nova Xavantina, Mato Grosso, Brazil
| | - Casimiro Mendoza
- Escuela de Ciencias Forestales, Unidad Académica del Trópico, Universidad Mayor de San Simón, Sacta, Bolivia
| | - Paulo Morandi
- Universidade do Estado de Mato Grosso, Campus de Nova Xavantina, Caixa Postal 08, 78.690-000, Nova Xavantina, Mato Grosso, Brazil
| | - David A Neill
- Universidad Estatal Amazónica, Puyo, Pastaza, Ecuador
| | - Percy Núñez Vargas
- Universidad Nacional de San Antonio Abad del Cusco, Av. de la Cultura N° 733, Cusco, Peru
| | - Edmar A Oliveira
- Universidade do Estado de Mato Grosso, Campus de Nova Xavantina, Caixa Postal 08, 78.690-000, Nova Xavantina, Mato Grosso, Brazil
| | - Eddie Lenza
- Universidade do Estado de Mato Grosso, Campus de Nova Xavantina, Caixa Postal 08, 78.690-000, Nova Xavantina, Mato Grosso, Brazil
| | - Walter A Palacios
- Universidad Técnica del Norte and Herbario Nacional del Ecuador, Casilla 17-21-1787, Av. Río Coca E6-115, Quito, Ecuador
| | | | - John J Pipoly
- Broward County Parks and Recreation Division, 950 NW 38th St., Oakland Park, FL 33309, USA
| | - Nigel C A Pitman
- Center for Tropical Conservation, Duke University, PO Box 90381, Durham, NC 27708, USA
| | - Adriana Prieto
- Doctorado Instituto de Ciencias Naturales, Universidad ciol de Colombia, Colombia
| | - Carlos A Quesada
- INPA, Av. André Araújo, 2.936 - Petrópolis - 69.067-375, Manaus, Amazonas, Brazil
| | - Hirma Ramirez-Angulo
- Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR), Facultad de Ciencias Forestales y Ambientales, Universidad de Los Andes, Conjunto Forestal, C.P. 5101, Mérida, Venezuela
| | - Agustin Rudas
- Doctorado Instituto de Ciencias Naturales, Universidad ciol de Colombia, Colombia
| | - Kalle Ruokolainen
- Department of Geography and Geology, University of Turku, 20014 Turku, Finland
| | - Rafael P Salomão
- Museu Paraense Emilio Goeldi, C.P. 399, 66.040-170, Belém, Pará, Brazil
| | - Marcos Silveira
- Museu Universitário, Universidade Federal do Acre, Rio Branco, AC 69910-900, Brazil
| | - Juliana Stropp
- Institute of Biological and Health Sciences (ICBS), Federal University of Alagoas, Maceió, AL, Brazil
| | - Hans Ter Steege
- Naturalis Biodiversity Center, Vondellaan 55, Postbus 9517, Leiden 2300 RA, The Netherlands
| | - Raquel Thomas-Caesar
- Iwokrama Intertiol Centre for Rainforest Conservation and Development, 77 High Street Kingston, Georgetown, Guyana
| | - Peter van der Hout
- Van der Hout Forestry Consulting, Jan Trooststraat 6, Rotterdam 3078 HP, The Netherlands
| | | | - Peter J van der Meer
- Van Hall Larenstein University of Applied Sciences, PO Box 9001, 6880 GB Velp, The Netherlands
| | - Rodolfo V Vasquez
- Jardín Botánico de Missouri, Prolongacion Bolognesi Mz. E, Lote 6, Oxapampa, Pasco, Peru
| | - Simone A Vieira
- Universidade Estadual de Campinas, Núcleo de Estudos e Pesquisas Ambientais - NEPAM, Campinas, São Paulo, Brazil
| | - Emilio Vilanova
- Facultad de Ciencias Forestales y Ambientales, Universidad de Los Andes, Mérida, Venezuela
| | - Vincent A Vos
- Centro de Investigación y Promoción del Campesinado - regional Norte Amazónico, C/ Nicanor Gonzalo Salvatierra N° 362, Casilla 16, Riberalta, Bolivia.,Universidad Autónoma del Beni, Campus Universitario, Riberalta, Bolivia
| | - Ophelia Wang
- Northern Arizona University, Flagstaff, AZ 86011, USA
| | - Kenneth R Young
- Department of Geography and the Environment, University of Texas at Austin, Austin, TX 78712, USA
| | - Roderick J Zagt
- Tropenbos International, PO Box 232, Wageningen 6700 AE, The Netherlands
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31
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McNicol IM, Ryan CM, Dexter KG, Ball SMJ, Williams M. Aboveground Carbon Storage and Its Links to Stand Structure, Tree Diversity and Floristic Composition in South-Eastern Tanzania. Ecosystems 2017; 21:740-754. [PMID: 30996655 PMCID: PMC6438643 DOI: 10.1007/s10021-017-0180-6] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2017] [Accepted: 08/15/2017] [Indexed: 12/04/2022]
Abstract
African savannas and dry forests represent a large, but poorly quantified store of biomass carbon and biodiversity. Improving this information is hindered by a lack of recent forest inventories, which are necessary for calibrating earth observation data and for evaluating the relationship between carbon stocks and tree diversity in the context of forest conservation (for example, REDD+). Here, we present new inventory data from south-eastern Tanzania, comprising more than 15,000 trees at 25 locations located across a gradient of aboveground woody carbon (AGC) stocks. We find that larger trees disproportionately contribute to AGC, with the largest 3.7% of individuals containing half the carbon. Tree species diversity and carbon stocks were positively related, implying a potential functional relationship between the two, and a ‘win–win’ scenario for conservation; however, lower biomass areas also contain diverse species assemblages meaning that carbon-oriented conservation may miss important areas of biodiversity. Despite these variations, we find that total tree abundance and biomass is skewed towards a few locally dominant species, with eight and nine species (5.7% of the total) accounting for over half the total measured trees and carbon, respectively. This finding implies that carbon production in these areas is channelled through a small number of relatively abundant species. Our results provide key insights into the structure and functioning of these heterogeneous ecosystems and indicate the need for novel strategies for future measurement and monitoring of carbon stocks and biodiversity, including the use for larger plots to capture spatial variations in large tree density and AGC stocks, and to allow the calibration of earth observation data.
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Affiliation(s)
- Iain M McNicol
- 1School of Geosciences, University of Edinburgh, Crew Building, Alexander Crum Brown Road, Edinburgh, EH9 3FF Scotland, UK
| | - Casey M Ryan
- 1School of Geosciences, University of Edinburgh, Crew Building, Alexander Crum Brown Road, Edinburgh, EH9 3FF Scotland, UK
| | - Kyle G Dexter
- 1School of Geosciences, University of Edinburgh, Crew Building, Alexander Crum Brown Road, Edinburgh, EH9 3FF Scotland, UK
| | - Stephen M J Ball
- Mpingo Conservation and Development Initiative, Kilwa Masoko, United Republic of Tanzania.,Present Address: Farm Africa, Dar Es Salaam, United Republic of Tanzania
| | - Mathew Williams
- 1School of Geosciences, University of Edinburgh, Crew Building, Alexander Crum Brown Road, Edinburgh, EH9 3FF Scotland, UK.,4The National Centre for Earth Observation, Natural Environment Research Council, Swindon, UK
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32
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Tripp EA, Tsai YHE, Zhuang Y, Dexter KG. RADseq dataset with 90% missing data fully resolves recent radiation of Petalidium (Acanthaceae) in the ultra-arid deserts of Namibia. Ecol Evol 2017; 7:7920-7936. [PMID: 29043045 PMCID: PMC5632676 DOI: 10.1002/ece3.3274] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2017] [Revised: 06/16/2017] [Accepted: 06/20/2017] [Indexed: 01/04/2023] Open
Abstract
Deserts, even those at tropical latitudes, often have strikingly low levels of plant diversity, particularly within genera. One remarkable exception to this pattern is the genus Petalidium (Acanthaceae), in which 37 of 40 named species occupy one of the driest environments on Earth, the Namib Desert of Namibia and neighboring Angola. To contribute to understanding this enigmatic diversity, we generated RADseq data for 47 accessions of Petalidium representing 22 species. We explored the impacts of 18 different combinations of assembly parameters in de novo assembly of the data across nine levels of missing data plus a best practice assembly using a reference Acanthaceae genome for a total of 171 sequence datasets assembled. RADseq data assembled at several thresholds of missing data, including 90% missing data, yielded phylogenetic hypotheses of Petalidium that were confidently and nearly fully resolved, which is notable given that divergence time analyses suggest a crown age for African species of 3.6–1.4 Ma. De novo assembly of our data yielded the most strongly supported and well‐resolved topologies; in contrast, reference‐based assembly performed poorly, perhaps due in part to moderate phylogenetic divergence between the reference genome, Ruellia speciosa, and the ingroup. Overall, we found that Petalidium, despite the harshness of the environment in which species occur, shows a net diversification rate (0.8–2.1 species per my) on par with those of diverse genera in tropical, Mediterranean, and alpine environments.
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Affiliation(s)
- Erin A Tripp
- Department of Ecology & Evolutionary Biology UCB 334 University of Colorado Boulder CO USA.,Museum of Natural History UCB 350 University of Colorado Boulder CO USA
| | - Yi-Hsin Erica Tsai
- Department of Ecology & Evolutionary Biology UCB 334 University of Colorado Boulder CO USA.,Museum of Natural History UCB 350 University of Colorado Boulder CO USA
| | - Yongbin Zhuang
- Department of Ecology & Evolutionary Biology UCB 334 University of Colorado Boulder CO USA.,Museum of Natural History UCB 350 University of Colorado Boulder CO USA
| | - Kyle G Dexter
- School of GeoSciences University of Edinburgh Edinburgh UK.,Royal Botanic Garden Edinburgh Edinburgh UK
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33
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Esquivel-Muelbert A, Galbraith D, Dexter KG, Baker TR, Lewis SL, Meir P, Rowland L, Costa ACLD, Nepstad D, Phillips OL. Biogeographic distributions of neotropical trees reflect their directly measured drought tolerances. Sci Rep 2017; 7:8334. [PMID: 28827613 PMCID: PMC5567183 DOI: 10.1038/s41598-017-08105-8] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2017] [Accepted: 07/10/2017] [Indexed: 11/09/2022] Open
Abstract
High levels of species diversity hamper current understanding of how tropical forests may respond to environmental change. In the tropics, water availability is a leading driver of the diversity and distribution of tree species, suggesting that many tropical taxa may be physiologically incapable of tolerating dry conditions, and that their distributions along moisture gradients can be used to predict their drought tolerance. While this hypothesis has been explored at local and regional scales, large continental-scale tests are lacking. We investigate whether the relationship between drought-induced mortality and distributions holds continentally by relating experimental and observational data of drought-induced mortality across the Neotropics to the large-scale bioclimatic distributions of 115 tree genera. Across the different experiments, genera affiliated to wetter climatic regimes show higher drought-induced mortality than dry-affiliated ones, even after controlling for phylogenetic relationships. This pattern is stronger for adult trees than for saplings or seedlings, suggesting that the environmental filters exerted by drought impact adult tree survival most strongly. Overall, our analysis of experimental, observational, and bioclimatic data across neotropical forests suggests that increasing moisture-stress is indeed likely to drive significant changes in floristic composition.
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Affiliation(s)
| | - David Galbraith
- School of Geography, University of Leeds, Leeds, LS2 9JT, UK
| | - Kyle G Dexter
- Royal Botanic Garden of Edinburgh, EH3 5LR, Edinburgh, UK
- School of Geosciences, University of Edinburgh, Edinburgh, UK
| | - Timothy R Baker
- School of Geography, University of Leeds, Leeds, LS2 9JT, UK
| | - Simon L Lewis
- School of Geography, University of Leeds, Leeds, LS2 9JT, UK
- Department of Geography, University College London, London, UK
| | - Patrick Meir
- School of Geosciences, University of Edinburgh, Edinburgh, UK
- Research School of Biology, Australian National University, Canberra, Australia
| | - Lucy Rowland
- College of Life and Environmental Sciences, University of Exeter, Exeter, UK
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Neves DM, Dexter KG, Pennington RT, Valente ASM, Bueno ML, Eisenlohr PV, Fontes MA, Miranda PLS, Moreira SN, Rezende VL, Saiter FZ, Oliveira-Filho AT. Dissecting a biodiversity hotspot: The importance of environmentally marginal habitats in the Atlantic Forest Domain of South America. DIVERS DISTRIB 2017. [DOI: 10.1111/ddi.12581] [Citation(s) in RCA: 74] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
Affiliation(s)
- Danilo M. Neves
- Department of Ecology and Evolutionary Biology; University of Arizona; Tucson AZ USA
| | - Kyle G. Dexter
- School of GeoSciences; The University of Edinburgh; Edinburgh UK
- Royal Botanic Garden Edinburgh; Edinburgh UK
| | | | | | - Marcelo L. Bueno
- Laboratório de Ecologia e Evolução de Plantas; Departamento de Biologia Vegetal; Universidade Federal de Viçosa; Viçosa Minas Gerais Brazil
| | - Pedro V. Eisenlohr
- Laboratório de Ecologia; Universidade do Estado de Mato Grosso; Alta Floresta Brazil
| | - Marco A.L. Fontes
- Departamento de Ciências Florestais; Universidade Federal de Lavras; Lavras Brazil
| | | | - Suzana N. Moreira
- Programa de Pós-Graduação em Biologia Vegetal; Universidade Federal de Minas Gerais; Belo Horizonte Brazil
| | - Vanessa L. Rezende
- Programa de Pós-Graduação em Biologia Vegetal; Universidade Federal de Minas Gerais; Belo Horizonte Brazil
| | - Felipe Z. Saiter
- Instituto Federal do Espírito Santo; Santa Teresa Espírito Santo Brazil
| | - Ary T. Oliveira-Filho
- Programa de Pós-Graduação em Biologia Vegetal; Universidade Federal de Minas Gerais; Belo Horizonte Brazil
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35
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Dexter KG, Lavin M, Torke BM, Twyford AD, Kursar TA, Coley PD, Drake C, Hollands R, Pennington RT. Dispersal assembly of rain forest tree communities across the Amazon basin. Proc Natl Acad Sci U S A 2017; 114:2645-2650. [PMID: 28213498 PMCID: PMC5347625 DOI: 10.1073/pnas.1613655114] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
We investigate patterns of historical assembly of tree communities across Amazonia using a newly developed phylogeny for the species-rich neotropical tree genus Inga We compare our results with those for three other ecologically important, diverse, and abundant Amazonian tree lineages, Swartzia, Protieae, and Guatteria Our analyses using phylogenetic diversity metrics demonstrate a clear lack of geographic phylogenetic structure, and show that local communities of Inga and regional communities of all four lineages are assembled by dispersal across Amazonia. The importance of dispersal in the biogeography of Inga and other tree genera in Amazonian and Guianan rain forests suggests that speciation is not driven by vicariance, and that allopatric isolation following dispersal may be involved in the speciation process. A clear implication of these results is that over evolutionary timescales, the metacommunity for any local or regional tree community in the Amazon is the entire Amazon basin.
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Affiliation(s)
- Kyle G Dexter
- School of GeoSciences, University of Edinburgh, Edinburgh EH9 3FF, United Kingdom;
- Royal Botanic Garden Edinburgh, Edinburgh EH3 5LR, United Kingdom
| | - Mathew Lavin
- Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, MT 59717
| | - Benjamin M Torke
- Institute of Systematic Botany, New York Botanical Garden, Bronx, NY 10458
| | - Alex D Twyford
- Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3FL, United Kingdom
| | - Thomas A Kursar
- Biology Department, University of Utah, Salt Lake City, UT 84112
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancon, Panama
| | - Phyllis D Coley
- Biology Department, University of Utah, Salt Lake City, UT 84112
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancon, Panama
| | - Camila Drake
- Royal Botanic Garden Edinburgh, Edinburgh EH3 5LR, United Kingdom
| | - Ruth Hollands
- Royal Botanic Garden Edinburgh, Edinburgh EH3 5LR, United Kingdom
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Banda-R K, Delgado-Salinas A, Dexter KG, Linares-Palomino R, Oliveira-Filho A, Prado D, Pullan M, Quintana C, Riina R, Rodríguez M GM, Weintritt J, Acevedo-Rodríguez P, Adarve J, Álvarez E, Aranguren B A, Arteaga JC, Aymard G, Castaño A, Ceballos-Mago N, Cogollo Á, Cuadros H, Delgado F, Devia W, Dueñas H, Fajardo L, Fernández Á, Fernández MÁ, Franklin J, Freid EH, Galetti LA, Gonto R, González-M R, Graveson R, Helmer EH, Idárraga Á, López R, Marcano-Vega H, Martínez OG, Maturo HM, McDonald M, McLaren K, Melo O, Mijares F, Mogni V, Molina D, Moreno NDP, Nassar JM, Neves DM, Oakley LJ, Oatham M, Olvera-Luna AR, Pezzini FF, Dominguez OJR, Ríos ME, Rivera O, Rodríguez N, Rojas A, Särkinen T, Sánchez R, Smith M, Vargas C, Villanueva B, Pennington RT. Plant diversity patterns in neotropical dry forests and their conservation implications. Science 2017; 353:1383-1387. [PMID: 27708031 DOI: 10.1126/science.aaf5080] [Citation(s) in RCA: 166] [Impact Index Per Article: 23.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2016] [Accepted: 08/11/2016] [Indexed: 02/05/2023]
Abstract
Seasonally dry tropical forests are distributed across Latin America and the Caribbean and are highly threatened, with less than 10% of their original extent remaining in many countries. Using 835 inventories covering 4660 species of woody plants, we show marked floristic turnover among inventories and regions, which may be higher than in other neotropical biomes, such as savanna. Such high floristic turnover indicates that numerous conservation areas across many countries will be needed to protect the full diversity of tropical dry forests. Our results provide a scientific framework within which national decision-makers can contextualize the floristic significance of their dry forest at a regional and continental scale.
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Affiliation(s)
| | - Karina Banda-R
- Royal Botanic Garden Edinburgh, 20a Inverleith Row, EH3 5LR, Edinburgh, UK. Fundación Ecosistemas Secos de Colombia, Calle 5 A No. 70 C-31, Bogotá, Colombia
| | | | - Kyle G Dexter
- Royal Botanic Garden Edinburgh, 20a Inverleith Row, EH3 5LR, Edinburgh, UK. School of GeoSciences, University of Edinburgh, Edinburgh, UK
| | - Reynaldo Linares-Palomino
- Universidad Nacional Agraria La Molina, Avenida La Molina, Lima, Perú. Smithsonian Conservation Biology Institute, Los Libertadores 215, San Isidro, Lima, Perú
| | - Ary Oliveira-Filho
- Universidade Federal de Minas Gerais (UFMG), Instituto de Ciências Biológicas (ICB), Departamento de Botânica, Avenida Antônio. Carlos, 6627-Pampulha, Belo Horizonte, Minas Gerais, Brazil
| | - Darién Prado
- Cátedra de Botánica, IICAR-CONICET, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, C.C. Nº 14, S2125ZAA Zavalla, Argentina
| | - Martin Pullan
- Royal Botanic Garden Edinburgh, 20a Inverleith Row, EH3 5LR, Edinburgh, UK
| | - Catalina Quintana
- Pontificia Universidad Católica del Ecuador, Facultad de Ciencias Exactas, Escuela de Biología, Avenida 12 de Octubre 1076 y Roca, Quito, Ecuador
| | - Ricarda Riina
- Real Jardín Botánico, RJB-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - Gina M Rodríguez M
- Fundación Ecosistemas Secos de Colombia, Calle 5 A No. 70 C-31, Bogotá, Colombia
| | - Julia Weintritt
- Royal Botanic Garden Edinburgh, 20a Inverleith Row, EH3 5LR, Edinburgh, UK
| | - Pedro Acevedo-Rodríguez
- Smithsonian National Museum of Natural History, West Loading Dock, 10th and Constitution Avenue, NW, Washington, DC 20560-0166,USA
| | - Juan Adarve
- Parque Regional "El Vínculo"-INCIVA, El Vínculo-Kilometro 3 al sur de Buga sobre la Carretera Panamericana, Valle del Cauca, Colombia
| | - Esteban Álvarez
- Jardín Botánico de Medellín "Joaquín Antonio Uribe", Calle 73 No. 51D-14, Medellín, Colombia
| | - Anairamiz Aranguren B
- Instituto de Ciencias Ambientales y Ecológicas, Facultad de Ciencias, Núcleo Pedro Rincón, La Hechicera, 3er Piso, Universidad de los Andes (ULA), Mérida, Venezuela
| | | | - Gerardo Aymard
- Programa de Ciencias del Agro y el Mar, Herbario Universitario (PORT), UNELLEZ-Guanare, Mesa de Cavacas, Estado Portuguesa 3350, Venezuela
| | - Alejandro Castaño
- Jardín Botánico "Juan María Céspedes" INCIVA, Mateguadua, Tuluá, Valle del Cauca, Colombia
| | - Natalia Ceballos-Mago
- Proyecto Mono de Margarita and Fundación Vuelta Larga, Isla de Margarita, Estado Nueva Esparta, Venezuela
| | - Álvaro Cogollo
- Jardín Botánico de Medellín "Joaquín Antonio Uribe", Calle 73 No. 51D-14, Medellín, Colombia
| | - Hermes Cuadros
- Universidad del Atlántico, Kilometro 7 Vía Puerto, Barranquilla, Atlántico, Colombia
| | - Freddy Delgado
- Centro de Investigaciones y Servicios Ambientales (ECOVIDA), Delegación Territorial del Ministerio de Ciencia, Tecnología, y Medio Ambiente, Pinar del Río, Cuba
| | - Wilson Devia
- Unidad Central del Valle del Cauca (UCEVA), Carrera 25 B No. 44-28, Tulúa, Valle del Cauca, Colombia
| | - Hilda Dueñas
- Herbario SURCO, Universidad Surcolombiana, Neiva, Colombia
| | - Laurie Fajardo
- Centro de Ecología, Instituto Venezolano de Investigaciones Científicas, Apartado 20632, Caracas 1020-A, Venezuela
| | - Ángel Fernández
- Centro de Biofísica y Bioquímica (Herbarium), Instituto Venezolano de Investigaciones Científicas, Apartado 20632, Caracas 1020-A, Venezuela
| | | | - Janet Franklin
- School of Geographical Sciences and Urban Planning, Arizona State University, Post Office Box 875302, Tempe, AZ 85287-5302, USA
| | - Ethan H Freid
- Bahamas National Trust, Leon Levy Native Plant Preserve, Eleuthera, Bahamas
| | - Luciano A Galetti
- Cátedra de Botánica, IICAR-CONICET, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, C.C. Nº 14, S2125ZAA Zavalla, Argentina
| | - Reina Gonto
- Centro de Biofísica y Bioquímica (Herbarium), Instituto Venezolano de Investigaciones Científicas, Apartado 20632, Caracas 1020-A, Venezuela
| | - Roy González-M
- Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Avenida Paseo Bolívar 16-20, Bogotá, D.C., Colombia. Facultad de Ciencias Naturales y Matemática, Universidad del Rosario, Carrera 26 No. 63B-48, Bogotá, Colombia
| | - Roger Graveson
- Consultant Botanist, Cas en Bas Road, Gros Islet, St. Lucia
| | - Eileen H Helmer
- Forest Service, Southern Research Station, International Institute of Tropical Forestry, Jardín Botánico Sur, 1201 Calle Ceiba, San Juan, PR00926, Puerto Rico
| | - Álvaro Idárraga
- Grupo de Estudios Botánicos, Universidad de Antioquia, AA 1226 Medellín, Colombia
| | - René López
- Universidad Distrital Francisco José de Caldas, Carrera 5 Este No. 15-82, Bogotá, Colombia
| | - Humfredo Marcano-Vega
- Forest Service, Southern Research Station, International Institute of Tropical Forestry, Jardín Botánico Sur, 1201 Calle Ceiba, San Juan, PR00926, Puerto Rico
| | - Olga G Martínez
- Facultad de Ciencias Naturales, Universidad Nacional de Salta- Avenida Bolivia 5150, 4400 Salta, Argentina
| | - Hernán M Maturo
- Cátedra de Botánica, IICAR-CONICET, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, C.C. Nº 14, S2125ZAA Zavalla, Argentina
| | - Morag McDonald
- School of Environment, Natural Resources, and Geography, Thoday Building, Room G21, Bangor University, Bangor LL57 2DG, UK
| | - Kurt McLaren
- Department of Life Sciences, University of West Indies, Mona, Jamaica
| | - Omar Melo
- Universidad del Tolima, Barrio Santa Helena Parte Alta, Código Postal 730006299, Ibagué, Tolima, Colombia
| | - Francisco Mijares
- Fundación Orinoquia Biodiversa, Calle 15 No. 12-15, Tame, Arauca, Colombia
| | - Virginia Mogni
- Cátedra de Botánica, IICAR-CONICET, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, C.C. Nº 14, S2125ZAA Zavalla, Argentina
| | - Diego Molina
- Grupo de Estudios Botánicos, Universidad de Antioquia, AA 1226 Medellín, Colombia
| | - Natalia Del Pilar Moreno
- Instituto de Ciencias Naturales,Universidad Nacional de Colombia, Sede Bogotá, Código Postal 111321, Avenida Carrera 30 No. 45-03, Edificio 425, Bogotá, Colombia
| | - Jafet M Nassar
- Centro de Ecología, Instituto Venezolano de Investigaciones Científicas, Apartado 20632, Caracas 1020-A, Venezuela
| | - Danilo M Neves
- Royal Botanic Garden Edinburgh, 20a Inverleith Row, EH3 5LR, Edinburgh, UK. Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - Luis J Oakley
- Cátedra de Botánica, IICAR-CONICET, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, C.C. Nº 14, S2125ZAA Zavalla, Argentina
| | - Michael Oatham
- Department of Life Sciences, The University of The West Indies St. Augustine, Natural Sciences Building, Old Wing, Room 222, St. Augustine, Trinidad and Tobago
| | - Alma Rosa Olvera-Luna
- Departamento de Botánica, Universidad Nacional Autónoma de México, México D.F., México
| | - Flávia F Pezzini
- Royal Botanic Garden Edinburgh, 20a Inverleith Row, EH3 5LR, Edinburgh, UK
| | | | - María Elvira Ríos
- Universidad de Pamplona, Ciudad Universitaria, Pamplona, Norte de Santander, Colombia
| | - Orlando Rivera
- Instituto de Ciencias Naturales,Universidad Nacional de Colombia, Sede Bogotá, Código Postal 111321, Avenida Carrera 30 No. 45-03, Edificio 425, Bogotá, Colombia
| | - Nelly Rodríguez
- Departamento de Biología, Universidad Nacional de Colombia, Sede Bogotá, Código Postal 111321Avenida Carrera 30 No. 45-03, Edificio 476, Bogotá, Colombia
| | - Alicia Rojas
- Jardín Botánico Eloy Valenzuela, Avenida Bucarica, Floridablanca, Santander, Colombia
| | - Tiina Särkinen
- Royal Botanic Garden Edinburgh, 20a Inverleith Row, EH3 5LR, Edinburgh, UK
| | - Roberto Sánchez
- Universidad de Pamplona, Ciudad Universitaria, Pamplona, Norte de Santander, Colombia
| | - Melvin Smith
- Consultant Botanist, Cas en Bas Road, Gros Islet, St. Lucia
| | - Carlos Vargas
- Jardín Botánico de Bogotá "José Celestino Mutis", Avenida Calle 63 No. 68-95, Bogotá, Colombia. Facultad de Ciencias Naturales y Matemática, Universidad del Rosario, Carrera 26 No. 63B-48, Bogotá, Colombia
| | - Boris Villanueva
- Universidad del Tolima, Barrio Santa Helena Parte Alta, Código Postal 730006299, Ibagué, Tolima, Colombia
| | - R Toby Pennington
- Royal Botanic Garden Edinburgh, 20a Inverleith Row, EH3 5LR, Edinburgh, UK
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Baker TR, Pennington RT, Dexter KG, Fine PVA, Fortune-Hopkins H, Honorio EN, Huamantupa-Chuquimaco I, Klitgård BB, Lewis GP, de Lima HC, Ashton P, Baraloto C, Davies S, Donoghue MJ, Kaye M, Kress WJ, Lehmann CER, Monteagudo A, Phillips OL, Vasquez R. Maximising Synergy among Tropical Plant Systematists, Ecologists, and Evolutionary Biologists. Trends Ecol Evol 2017; 32:258-267. [PMID: 28214038 DOI: 10.1016/j.tree.2017.01.007] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2016] [Revised: 01/19/2017] [Accepted: 01/20/2017] [Indexed: 11/26/2022]
Abstract
Closer collaboration among ecologists, systematists, and evolutionary biologists working in tropical forests, centred on studies within long-term permanent plots, would be highly beneficial for their respective fields. With a key unifying theme of the importance of vouchered collection and precise identification of species, especially rare ones, we identify four priority areas where improving links between these communities could achieve significant progress in biodiversity and conservation science: (i) increasing the pace of species discovery; (ii) documenting species turnover across space and time; (iii) improving models of ecosystem change; and (iv) understanding the evolutionary assembly of communities and biomes.
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Affiliation(s)
| | | | - Kyle G Dexter
- Royal Botanic Garden Edinburgh, Edinburgh, UK; School of GeoSciences, University of Edinburgh, Edinburgh, UK
| | - Paul V A Fine
- Department of Integrative Biology and University and Jepson Herbaria, University of California, Berkeley, CA, USA
| | | | | | - Isau Huamantupa-Chuquimaco
- Programa de Pós-Graduação em Botânica, Escola Nacional de Botânica Tropical, Instituto de Pesquisas Jardim Botânico de Rio de Janeiro (ENBT/JBRJ). Rua Pacheco Leão, 2040. RJ, Brazil
| | - Bente B Klitgård
- Department for Identification and Naming, Royal Botanic Gardens, Kew, UK
| | - Gwilym P Lewis
- Department for Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, UK
| | - Haroldo C de Lima
- Programa de Pós-Graduação em Botânica, Escola Nacional de Botânica Tropical, Instituto de Pesquisas Jardim Botânico de Rio de Janeiro (ENBT/JBRJ). Rua Pacheco Leão, 2040. RJ, Brazil
| | | | - Christopher Baraloto
- International Center for Tropical Botany, Florida International University, Miami, USA
| | - Stuart Davies
- Center for Tropical Forest Science - Forest Global Earth Observatory, Smithsonian Tropical Research Institute, Washington, DC, USA; National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| | - Michael J Donoghue
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA
| | - Maria Kaye
- School of Biological Sciences, University of Aberdeen, Aberdeen, UK
| | - W John Kress
- National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
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DRYFLOR, Pennington RT, Banda-R K, Delgado-Salinas A, Dexter KG, Galetti L, Linares-Palomino R, Maturo HM, Mogni V, Oakley L, Olivera-Filho A, Prado D, Quintana C, Riina R, Särkinen T. Forest conservation: Remember Gran Chaco—Response. Science 2017; 355:465-466. [PMID: 28154042 DOI: 10.1126/science.aal5010] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Affiliation(s)
- DRYFLOR
- Latin American and Caribbean Seasonally Dry Tropical Forest Floristic Network, Royal Botanic Garden Edinburgh, Edinburgh, EH3 5LR, UK
| | | | - Karina Banda-R
- Royal Botanic Garden Edinburgh, EH3 5LR, Edinburgh, UK
- Fundación Ecosistemas Secos de Colombia, Bogotá, Colombia
| | | | - Kyle G. Dexter
- Royal Botanic Garden Edinburgh, EH3 5LR, Edinburgh, UK
- School of GeoSciences, University of Edinburgh, Edinburgh, UK
| | - Luciano Galetti
- Cátedra de Botánica, IICAR-CONICET, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, S2125ZAA Zavalla, Argentina
| | - Reynaldo Linares-Palomino
- Universidad Nacional Agraria La Molina, Avenida La Molina, Lima, Perú
- Smithsonian Conservation Biology Institute, San Isidro, Lima, Perú
| | - Hernán M. Maturo
- Cátedra de Botánica, IICAR-CONICET, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, S2125ZAA Zavalla, Argentina
| | - Virginia Mogni
- Cátedra de Botánica, IICAR-CONICET, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, S2125ZAA Zavalla, Argentina
| | - Luis Oakley
- Cátedra de Botánica, IICAR-CONICET, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, S2125ZAA Zavalla, Argentina
| | - Ary Olivera-Filho
- Universidade Federal de Minas Gerais (UFMG), Instituto de Ciências Biológicas (ICB), Departamento de Botânica, Belo Horizonte, Minas Gerais, Brazil
| | - Darién Prado
- Cátedra de Botánica, IICAR-CONICET, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, S2125ZAA Zavalla, Argentina
| | - Catalina Quintana
- Pontificia Universidad Católica del Ecuador, Facultad de Ciencias Exactas, Escuela de Biología, Quito, Ecuador
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Dryflor, Pennington RT, Banda-R K, Delgado-Salinas A, Dexter KG, Linares-Palomino R, Olivera-Filho A, Prado D, Quintana C, Riina R. Forest conservation: Humans' handprints-Response. Science 2017; 355:467. [PMID: 28154044 DOI: 10.1126/science.aal2602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Affiliation(s)
- Dryflor
- Latin American and Caribbean Seasonally Dry Tropical Forest Floristic Network, Royal Botanic Garden Edinburgh, Edinburgh, EH3 5LR, UK
| | | | - Karina Banda-R
- Royal Botanic Garden Edinburgh, EH3 5LR, Edinburgh, UK.,Fundación Ecosistemas Secos de Colombia, Bogotá, Colombia
| | | | - Kyle G Dexter
- Royal Botanic Garden Edinburgh, EH3 5LR, Edinburgh, UK.,School of GeoSciences, University of Edinburgh, Edinburgh, UK
| | - Reynaldo Linares-Palomino
- Universidad Nacional Agraria La Molina, Avenida La Molina, Lima, Perú.,Smithsonian Conservation Biology Institute, San Isidro, Lima, Perú
| | - Ary Olivera-Filho
- Universidade Federal de Minas Gerais (UFMG), Instituto de Ciências Biológicas (ICB), Departamento de Botánica, Belo Horizonte, Minas Gerais, Brazil
| | - Darién Prado
- Cátedra de Botánica, IICAR-CONICET, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, S2125ZAA Zavalla, Argentina
| | - Catalina Quintana
- Pontificia Universidad Católica del Ecuador, Facultad de Ciencias Exactas, Escuela de Biología, Quito, Ecuador
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40
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Courtois EA, Dexter KG, Paine CET, Stien D, Engel J, Baraloto C, Chave J. Evolutionary patterns of volatile terpene emissions across 202 tropical tree species. Ecol Evol 2016; 6:2854-64. [PMID: 27069586 PMCID: PMC4803801 DOI: 10.1002/ece3.1810] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Accepted: 10/04/2015] [Indexed: 11/25/2022] Open
Abstract
Plant responses to natural enemies include formation of secondary metabolites acting as direct or indirect defenses. Volatile terpenes represent one of the most diverse groups of secondary metabolites. We aimed to explore evolutionary patterns of volatile terpene emission. We measured the composition of damage‐induced volatile terpenes from 202 Amazonian tree species, spanning the angiosperm phylogeny. Volatile terpenes were extracted with solid‐phase micro extraction and desorbed in a gas chromatography–mass spectrometry for compound identification. The chemical diversity of the terpene blend showed a strong phylogenetic signal as closely related species emitted a similar number of compounds. Closely related species also tended to have compositionally similar blends, although this relationship was weak. Meanwhile, the ability to emit a given compound showed no significant phylogenetic signal for 200 of 286 compounds, indicating a high rate of diversification in terpene synthesis and/or great variability in their expression. Three lineages (Magnoliales, Laurales, and Sapindales) showed exceptionally high rates of terpene diversification. Of the 70 compounds found in >10% of their species, 69 displayed significant correlated evolution with at least one other compound. These results provide insights into the complex evolutionary history of volatile terpenes in angiosperms, while highlighting the need for further research into this important class of compounds.
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Affiliation(s)
- Elodie A Courtois
- CNRS Guyane USR 34562, Avenue Gustave Charlery 97300 Cayenne France; Laboratoire Evolution et Diversité Biologique UMR 5174 CNRS/Université Paul Sabatier 118, route de Narbonne 31062 Toulouse France; CNRS, UMR Ecofog Université Antilles Guyane BP 70997387 Kourou Cedex France
| | - Kyle G Dexter
- Laboratoire Evolution et Diversité Biologique UMR 5174 CNRS/Université Paul Sabatier 118, route de Narbonne 31062 Toulouse France; School of GeoSciences University of Edinburgh Edinburgh EH9 3FFUK; Royal Botanic Garden Edinburgh 20a Inverleith Row Edinburgh EH3 5LR UK
| | | | - Didier Stien
- CNRS, UMR Ecofog Université Antilles Guyane BP 70997387 Kourou Cedex France; Laboratoire de Biodiversité et Biotechnologies Microbiennes (LBBM) Observatoire Océanologique Sorbonne Universités, UPMC Univ Paris 06, CNRS 66650 Banyuls-sur-mer France
| | - Julien Engel
- INRA UMR Ecofog BP 701 97387 Kourou Cedex France
| | - Christopher Baraloto
- INRAUMR Ecofog BP 70197387 Kourou Cedex France; International Center for Tropical Botany Department of Biological Sciences Florida International University Miami Florida 33199
| | - Jérôme Chave
- Laboratoire Evolution et Diversité Biologique UMR 5174 CNRS/Université Paul Sabatier 118, route de Narbonne 31062 Toulouse France
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41
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García-Villacorta R, Dexter KG, Pennington T. Amazonian White-Sand Forests Show Strong Floristic Links with Surrounding Oligotrophic Habitats and the Guiana Shield. Biotropica 2016. [DOI: 10.1111/btp.12302] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Roosevelt García-Villacorta
- Institute of Molecular Plant Sciences; University of Edinburgh; Edinburgh EH9 3BF U.K
- Centro Peruano para la Biodiversidad & Conservación; PCBC; Iquitos Peru
- Royal Botanic Garden Edinburgh; 20a Inverleith Row Edinburgh EH3 5LR U.K
| | - Kyle G. Dexter
- Royal Botanic Garden Edinburgh; 20a Inverleith Row Edinburgh EH3 5LR U.K
- School of GeoSciences; University of Edinburgh; Edinburgh EH9 3FF U.K
| | - Toby Pennington
- Royal Botanic Garden Edinburgh; 20a Inverleith Row Edinburgh EH3 5LR U.K
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42
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Nicholls JA, Pennington RT, Koenen EJM, Hughes CE, Hearn J, Bunnefeld L, Dexter KG, Stone GN, Kidner CA. Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae). Front Plant Sci 2015; 6:710. [PMID: 26442024 PMCID: PMC4584976 DOI: 10.3389/fpls.2015.00710] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2015] [Accepted: 08/25/2015] [Indexed: 05/20/2023]
Abstract
Evolutionary radiations are prominent and pervasive across many plant lineages in diverse geographical and ecological settings; in neotropical rainforests there is growing evidence suggesting that a significant fraction of species richness is the result of recent radiations. Understanding the evolutionary trajectories and mechanisms underlying these radiations demands much greater phylogenetic resolution than is currently available for these groups. The neotropical tree genus Inga (Leguminosae) is a good example, with ~300 extant species and a crown age of 2-10 MY, yet over 6 kb of plastid and nuclear DNA sequence data gives only poor phylogenetic resolution among species. Here we explore the use of larger-scale nuclear gene data obtained though targeted enrichment to increase phylogenetic resolution within Inga. Transcriptome data from three Inga species were used to select 264 nuclear loci for targeted enrichment and sequencing. Following quality control to remove probable paralogs from these sequence data, the final dataset comprised 259,313 bases from 194 loci for 24 accessions representing 22 Inga species and an outgroup (Zygia). Bayesian phylogenies reconstructed using either all loci concatenated or a gene-tree/species-tree approach yielded highly resolved phylogenies. We used coalescent approaches to show that the same targeted enrichment data also have significant power to discriminate among alternative within-species population histories within the widespread species I. umbellifera. In either application, targeted enrichment simplifies the informatics challenge of identifying orthologous loci associated with de novo genome sequencing. We conclude that targeted enrichment provides the large volumes of phylogenetically-informative sequence data required to resolve relationships within recent plant species radiations, both at the species level and for within-species phylogeographic studies.
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Affiliation(s)
- James A. Nicholls
- Ashworth Labs, Institute of Evolutionary Biology, School of Biological Sciences, University of EdinburghEdinburgh, UK
- Royal Botanic Garden EdinburghEdinburgh, UK
| | | | - Erik J. M. Koenen
- Institute of Systematic Botany, University of ZurichZürich, Switzerland
| | - Colin E. Hughes
- Institute of Systematic Botany, University of ZurichZürich, Switzerland
| | - Jack Hearn
- Ashworth Labs, Institute of Evolutionary Biology, School of Biological Sciences, University of EdinburghEdinburgh, UK
| | - Lynsey Bunnefeld
- Ashworth Labs, Institute of Evolutionary Biology, School of Biological Sciences, University of EdinburghEdinburgh, UK
| | - Kyle G. Dexter
- School of Geosciences, University of EdinburghEdinburgh, UK
| | - Graham N. Stone
- Ashworth Labs, Institute of Evolutionary Biology, School of Biological Sciences, University of EdinburghEdinburgh, UK
| | - Catherine A. Kidner
- Royal Botanic Garden EdinburghEdinburgh, UK
- Institute of Molecular Plant Sciences, School of Biological Sciences, University of EdinburghEdinburgh, UK
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43
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Honorio Coronado EN, Dexter KG, Pennington RT, Chave J, Lewis SL, Alexiades MN, Alvarez E, Alves de Oliveira A, Amaral IL, Araujo‐Murakami A, Arets EJMM, Aymard GA, Baraloto C, Bonal D, Brienen R, Cerón C, Cornejo Valverde F, Di Fiore A, Farfan‐Rios W, Feldpausch TR, Higuchi N, Huamantupa‐Chuquimaco I, Laurance SG, Laurance WF, López‐Gonzalez G, Marimon BS, Marimon‐Junior BH, Monteagudo Mendoza A, Neill D, Palacios Cuenca W, Peñuela Mora MC, Pitman NCA, Prieto A, Quesada CA, Ramirez Angulo H, Rudas A, Ruschel AR, Salinas Revilla N, Salomão RP, Segalin de Andrade A, Silman MR, Spironello W, Steege H, Terborgh J, Toledo M, Valenzuela Gamarra L, Vieira ICG, Vilanova Torre E, Vos V, Phillips OL. Phylogenetic diversity of Amazonian tree communities. DIVERS DISTRIB 2015. [DOI: 10.1111/ddi.12357] [Citation(s) in RCA: 57] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Affiliation(s)
- Eurídice N. Honorio Coronado
- School of Geography University of Leeds Leeds LS2 9JT UK
- Instituto de Investigaciones de la Amazonia Peruana Apartado Postal 784 Iquitos Peru
| | - Kyle G. Dexter
- School of GeoSciences University of Edinburgh Edinburgh EH9 3JN UK
- Royal Botanic Garden Edinburgh Edinburgh EH3 5LR UK
| | | | - Jérôme Chave
- Laboratoire Evolution et Diversité Biologique CNRS & Université Paul Sabatier Toulouse 31062 France
| | - Simon L. Lewis
- School of Geography University of Leeds Leeds LS2 9JT UK
- Department of Geography University College London London WC1E 6BT UK
| | - Miguel N. Alexiades
- School of Anthropology and Conservation University of Kent Marlowe Building Canterbury CT1 3EH UK
| | - Esteban Alvarez
- Jardín Botánico de Medellín Calle 73N 51D, 14 Medellín Colombia
| | | | - Iêda L. Amaral
- Projeto TEAM Instituto Nacional de Pesquisas da Amazônia C.P. 478 Manaus Brazil
| | - Alejandro Araujo‐Murakami
- Museo de Historia Natural Noel Kempff Mercado & Universidad Autonoma Gabriel Rene Moreno Casilla 2489, Av. Irala 565 Santa Cruz Bolivia
| | - Eric J. M. M. Arets
- Alterra Wageningen University and Research Centre PO Box 47, 6700 AA Wageningen The Netherlands
| | - Gerardo A. Aymard
- UNELLEZ‐Guanare Programa del Agro y el Mar Herbario Universitario (PORT) Mesa de Cavacas Estado Portuguesa 3350 Venezuela
| | - Christopher Baraloto
- Institut National de la Recherche Agronomique UMR Ecologie des Forêts de Guyane 97387 Kourou Cedex French Guiana
- International Center for Tropical Botany Department of Biological Sciences Florida International University Miami FL 33199 USA
| | - Damien Bonal
- Institut National de la Recherche Agronomique UMR EEF INRA‐Université de Lorraine 54280 Champenoux France
| | - Roel Brienen
- School of Geography University of Leeds Leeds LS2 9JT UK
| | - Carlos Cerón
- Herbario Alfredo Paredes Universidad Central del Ecuador Casilla 17‐01‐2177 Quito Ecuador
| | | | - Anthony Di Fiore
- Department of Anthropology University of Texas 2201 Speedway Stop C3200 Austin TX 78712 USA
| | - William Farfan‐Rios
- Biology Department and Center for Energy, Environment and Sustainability Wake Forest University 1834 Wake Forest Rd. Winston‐Salem 27109 NC USA
| | - Ted R. Feldpausch
- Geography College of Life and Environmental Sciences University of Exeter Exeter EX4 4RJ UK
| | - Niro Higuchi
- Instituto Nacional de Pesquisas da Amazônia C.P. 478 Manaus AM 69011‐970 Brazil
| | | | - Susan G. Laurance
- Centre for Tropical Environmental and Sustainability Science (TESS) and School of Marine and Tropical Biology James Cook University Cairns 4870 Qld Australia
| | - William F. Laurance
- Centre for Tropical Environmental and Sustainability Science (TESS) and School of Marine and Tropical Biology James Cook University Cairns 4870 Qld Australia
| | | | - Beatriz S. Marimon
- Programa de Pós‐Graduação em Ecologia e Conservação Universidade do Estado de Mato Grosso Caixa Postal 08 CEP 78.690‐000 Nova Xavantina Brazil
| | - Ben Hur Marimon‐Junior
- Programa de Pós‐Graduação em Ecologia e Conservação Universidade do Estado de Mato Grosso Caixa Postal 08 CEP 78.690‐000 Nova Xavantina Brazil
| | | | - David Neill
- Universidad Estatal Amazónica Puyo Pastaza Ecuador
| | - Walter Palacios Cuenca
- Universidad Técnica del Norte & Herbario Nacional del Ecuador Casilla 17‐21‐1787, Av. Río Coca E6‐115 Quito Ecuador
| | | | - Nigel C. A. Pitman
- Center for Tropical Conservation Nicholas School of the Environment Duke University Durham NC 27708 USA
- Science and Education The Field Museum Chicago IL 60605‐2496 USA
| | - Adriana Prieto
- Instituto de Ciencias Naturales Universidad Nacional de Colombia Carrera 30 N° 45‐03, Edificio 425 C.P. 111321 Bogotá Colombia
| | - Carlos A. Quesada
- Instituto Nacional de Pesquisas da Amazônia C.P. 478 Manaus AM 69011‐970 Brazil
| | - Hirma Ramirez Angulo
- Instituto de Investigaciones para el Desarrollo Forestal Facultad de Ciencias Forestales y Ambientales Universidad de Los Andes Conjunto Forestal C.P. 5101 Mérida Venezuela
| | - Agustín Rudas
- Instituto de Ciencias Naturales Universidad Nacional de Colombia Carrera 30 N° 45‐03, Edificio 425 C.P. 111321 Bogotá Colombia
| | - Ademir R. Ruschel
- Empresa Brasileira de Pesquisa Agropecuária Parque Estação Biológica ‐ PqEB s/n Brasilía Brazil
| | - Norma Salinas Revilla
- Universidad Nacional San Antonio Abad del Cusco Av. de la Cultura 733 Cusco Peru
- School of Geography and the Environment University of Oxford Oxford OX1 3QK UK
| | - Rafael P. Salomão
- Museu Paraense Emílio Goeldi Av. Magalhães Barata, 376 ‐ São Braz CEP 66040‐170 Belem Brazil
| | | | - Miles R. Silman
- Biology Department and Center for Energy, Environment and Sustainability Wake Forest University 1834 Wake Forest Rd. Winston‐Salem 27109 NC USA
| | - Wilson Spironello
- Projeto TEAM Instituto Nacional de Pesquisas da Amazônia C.P. 478 Manaus Brazil
| | - Hans Steege
- Naturalis Biodiversity Center PO Box, 2300 RA Leiden The Netherlands
- Ecology & Biodiversity Group Utrecht University Sorbonnelaan 14 Utrecht 3584 CS The Netherlands
| | - John Terborgh
- Center for Tropical Conservation Nicholas School of the Environment Duke University Durham NC 27708 USA
| | - Marisol Toledo
- Instituto Boliviano de Investigacióon Forestal, C.P. 6201 & Universidad Autónoma Gabriel René Moreno Av. Irala 565 Santa Cruz Bolivia
| | | | - Ima C. G. Vieira
- Museu Paraense Emílio Goeldi Av. Magalhães Barata, 376 ‐ São Braz CEP 66040‐170 Belem Brazil
| | - Emilio Vilanova Torre
- Instituto de Investigaciones para el Desarrollo Forestal Facultad de Ciencias Forestales y Ambientales Universidad de Los Andes Conjunto Forestal C.P. 5101 Mérida Venezuela
| | - Vincent Vos
- Universidad Autónoma del Beni Av. Ejército Nacional, Riberalta Riberalta Bolivia
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Nicholls JA, Pennington RT, Koenen EJM, Hughes CE, Hearn J, Bunnefeld L, Dexter KG, Stone GN, Kidner CA. Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae). Front Plant Sci 2015. [PMID: 26442024 DOI: 10.5061/dryad.r9c12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Evolutionary radiations are prominent and pervasive across many plant lineages in diverse geographical and ecological settings; in neotropical rainforests there is growing evidence suggesting that a significant fraction of species richness is the result of recent radiations. Understanding the evolutionary trajectories and mechanisms underlying these radiations demands much greater phylogenetic resolution than is currently available for these groups. The neotropical tree genus Inga (Leguminosae) is a good example, with ~300 extant species and a crown age of 2-10 MY, yet over 6 kb of plastid and nuclear DNA sequence data gives only poor phylogenetic resolution among species. Here we explore the use of larger-scale nuclear gene data obtained though targeted enrichment to increase phylogenetic resolution within Inga. Transcriptome data from three Inga species were used to select 264 nuclear loci for targeted enrichment and sequencing. Following quality control to remove probable paralogs from these sequence data, the final dataset comprised 259,313 bases from 194 loci for 24 accessions representing 22 Inga species and an outgroup (Zygia). Bayesian phylogenies reconstructed using either all loci concatenated or a gene-tree/species-tree approach yielded highly resolved phylogenies. We used coalescent approaches to show that the same targeted enrichment data also have significant power to discriminate among alternative within-species population histories within the widespread species I. umbellifera. In either application, targeted enrichment simplifies the informatics challenge of identifying orthologous loci associated with de novo genome sequencing. We conclude that targeted enrichment provides the large volumes of phylogenetically-informative sequence data required to resolve relationships within recent plant species radiations, both at the species level and for within-species phylogeographic studies.
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Affiliation(s)
- James A Nicholls
- Ashworth Labs, Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh Edinburgh, UK ; Royal Botanic Garden Edinburgh Edinburgh, UK
| | | | - Erik J M Koenen
- Institute of Systematic Botany, University of Zurich Zürich, Switzerland
| | - Colin E Hughes
- Institute of Systematic Botany, University of Zurich Zürich, Switzerland
| | - Jack Hearn
- Ashworth Labs, Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh Edinburgh, UK
| | - Lynsey Bunnefeld
- Ashworth Labs, Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh Edinburgh, UK
| | - Kyle G Dexter
- School of Geosciences, University of Edinburgh Edinburgh, UK
| | - Graham N Stone
- Ashworth Labs, Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh Edinburgh, UK
| | - Catherine A Kidner
- Royal Botanic Garden Edinburgh Edinburgh, UK ; Institute of Molecular Plant Sciences, School of Biological Sciences, University of Edinburgh Edinburgh, UK
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Honorio Coronado EN, Dexter KG, Poelchau MF, Hollingsworth PM, Phillips OL, Pennington RT, Carine M. Ficus insipida subsp. insipida (Moraceae) reveals the role of ecology in the phylogeography of widespread Neotropical rain forest tree species. J Biogeogr 2014; 41:1697-1709. [PMID: 25821341 PMCID: PMC4368618 DOI: 10.1111/jbi.12326] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
AIM To examine the phylogeography of Ficus insipida subsp. insipida in order to investigate patterns of spatial genetic structure across the Neotropics and within Amazonia. LOCATION Neotropics. METHODS Plastid DNA (trnH-psbA; 410 individuals from 54 populations) and nuclear ribosomal internal transcribed spacer (ITS; 85 individuals from 27 populations) sequences were sampled from Mexico to Bolivia, representing the full extent of the taxon's distribution. Divergence of plastid lineages was dated using a Bayesian coalescent approach. Genetic diversity was assessed with indices of haplotype and nucleotide diversities, and genetic structure was examined using spatial analysis of molecular variance (SAMOVA) and haplotype networks. Population expansion within Amazonia was tested using neutrality and mismatch distribution tests. RESULTS trnH-psbA sequences yielded 19 haplotypes restricted to either Mesoamerica or Amazonia; six haplotypes were found among ITS sequences. Diversification of the plastid DNA haplotypes began c. 14.6 Ma. Haplotype diversity for trnH-psbA was higher in Amazonia. Seven genetically differentiated SAMOVA groups were described for trnH-psbA, of which two were also supported by the presence of unique ITS sequences. Population expansion was suggested for both markers for the SAMOVA group that contains most Amazonian populations. MAIN CONCLUSIONS Our results show marked population genetic structure in F. insipida between Mesoamerica and Amazonia, implying that the Andes and seasonally dry areas of northern South America are eco-climatic barriers to its migration. This pattern is shared with other widespread pioneer species affiliated to wet habitats, indicating that the ecological characteristics of species may impact upon large-scale phylogeography. Ficus insipida also shows genetic structure in north-western Amazonia potentially related to pre-Pleistocene historical events. In contrast, evident population expansion elsewhere in Amazonia, in particular the presence of genetically uniform populations across the south-west, indicate recent colonization. Our findings are consistent with palaeoecological data that suggest recent post-glacial expansion of Amazonian forests in the south.
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Affiliation(s)
- Eurídice N Honorio Coronado
- School of Geography, University of LeedsLeeds, LS2 9JT, UK
- Instituto de Investigaciones de la Amazonia PeruanaIquitos, Peru
- *
Correspondence and present address: Eurídice N. Honorio Coronado, School of Geography, University of Leeds, Leeds, LS2 9JT, UK., E-mail:
| | - Kyle G Dexter
- School of GeoSciences, University of EdinburghEdinburgh, EH9 3JN, UK
- Royal Botanic Garden EdinburghEdinburgh, EH3 5LR, UK
| | - Monica F Poelchau
- Department of Biology, Georgetown UniversityWashington, DC, 20057, USA
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46
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Baker TR, Pennington RT, Magallon S, Gloor E, Laurance WF, Alexiades M, Alvarez E, Araujo A, Arets EJMM, Aymard G, de Oliveira AA, Amaral I, Arroyo L, Bonal D, Brienen RJW, Chave J, Dexter KG, Di Fiore A, Eler E, Feldpausch TR, Ferreira L, Lopez-Gonzalez G, van der Heijden G, Higuchi N, Honorio E, Huamantupa I, Killeen TJ, Laurance S, Leaño C, Lewis SL, Malhi Y, Marimon BS, Marimon Junior BH, Monteagudo Mendoza A, Neill D, Peñuela-Mora MC, Pitman N, Prieto A, Quesada CA, Ramírez F, Ramírez Angulo H, Rudas A, Ruschel AR, Salomão RP, de Andrade AS, Silva JNM, Silveira M, Simon MF, Spironello W, ter Steege H, Terborgh J, Toledo M, Torres-Lezama A, Vasquez R, Vieira ICG, Vilanova E, Vos VA, Phillips OL. Fast demographic traits promote high diversification rates of Amazonian trees. Ecol Lett 2014; 17:527-36. [PMID: 24589190 PMCID: PMC4285998 DOI: 10.1111/ele.12252] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2013] [Revised: 10/17/2013] [Accepted: 12/30/2013] [Indexed: 11/30/2022]
Abstract
The Amazon rain forest sustains the world's highest tree diversity, but it remains unclear why some clades of trees are hyperdiverse, whereas others are not. Using dated phylogenies, estimates of current species richness and trait and demographic data from a large network of forest plots, we show that fast demographic traits – short turnover times – are associated with high diversification rates across 51 clades of canopy trees. This relationship is robust to assuming that diversification rates are either constant or decline over time, and occurs in a wide range of Neotropical tree lineages. This finding reveals the crucial role of intrinsic, ecological variation among clades for understanding the origin of the remarkable diversity of Amazonian trees and forests.
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Affiliation(s)
- Timothy R Baker
- School of Geography, University of Leeds, Leeds, LS2 9JT, UK
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ter Steege H, Pitman NCA, Sabatier D, Baraloto C, Salomão RP, Guevara JE, Phillips OL, Castilho CV, Magnusson WE, Molino JF, Monteagudo A, Núñez Vargas P, Montero JC, Feldpausch TR, Coronado ENH, Killeen TJ, Mostacedo B, Vasquez R, Assis RL, Terborgh J, Wittmann F, Andrade A, Laurance WF, Laurance SGW, Marimon BS, Marimon BH, Guimarães Vieira IC, Amaral IL, Brienen R, Castellanos H, Cárdenas López D, Duivenvoorden JF, Mogollón HF, Matos FDDA, Dávila N, García-Villacorta R, Stevenson Diaz PR, Costa F, Emilio T, Levis C, Schietti J, Souza P, Alonso A, Dallmeier F, Montoya AJD, Fernandez Piedade MT, Araujo-Murakami A, Arroyo L, Gribel R, Fine PVA, Peres CA, Toledo M, Aymard C GA, Baker TR, Cerón C, Engel J, Henkel TW, Maas P, Petronelli P, Stropp J, Zartman CE, Daly D, Neill D, Silveira M, Paredes MR, Chave J, Lima Filho DDA, Jørgensen PM, Fuentes A, Schöngart J, Cornejo Valverde F, Di Fiore A, Jimenez EM, Peñuela Mora MC, Phillips JF, Rivas G, van Andel TR, von Hildebrand P, Hoffman B, Zent EL, Malhi Y, Prieto A, Rudas A, Ruschell AR, Silva N, Vos V, Zent S, Oliveira AA, Schutz AC, Gonzales T, Trindade Nascimento M, Ramirez-Angulo H, Sierra R, Tirado M, Umaña Medina MN, van der Heijden G, Vela CIA, Vilanova Torre E, Vriesendorp C, Wang O, Young KR, Baider C, Balslev H, Ferreira C, Mesones I, Torres-Lezama A, Urrego Giraldo LE, Zagt R, Alexiades MN, Hernandez L, Huamantupa-Chuquimaco I, Milliken W, Palacios Cuenca W, Pauletto D, Valderrama Sandoval E, Valenzuela Gamarra L, Dexter KG, Feeley K, Lopez-Gonzalez G, Silman MR. Hyperdominance in the Amazonian tree flora. Science 2013; 342:1243092. [PMID: 24136971 DOI: 10.1126/science.1243092] [Citation(s) in RCA: 391] [Impact Index Per Article: 35.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
The vast extent of the Amazon Basin has historically restricted the study of its tree communities to the local and regional scales. Here, we provide empirical data on the commonness, rarity, and richness of lowland tree species across the entire Amazon Basin and Guiana Shield (Amazonia), collected in 1170 tree plots in all major forest types. Extrapolations suggest that Amazonia harbors roughly 16,000 tree species, of which just 227 (1.4%) account for half of all trees. Most of these are habitat specialists and only dominant in one or two regions of the basin. We discuss some implications of the finding that a small group of species--less diverse than the North American tree flora--accounts for half of the world's most diverse tree community.
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Abstract
We present a unique perspective on the role of historical processes in community assembly by synthesizing analyses of species turnover among communities with environmental data and independent, population genetic-derived estimates of among-community dispersal. We sampled floodplain and terra firme communities of the diverse tree genus Inga (Fabaceae) across a 250-km transect in Amazonian Peru and found patterns of distance-decay in compositional similarity in both habitat types. However, conventional analyses of distance-decay masked a zone of increased species turnover present in the middle of the transect. We estimated past seed dispersal among the same communities by examining geographic plastid DNA variation for eight widespread Inga species and uncovered a population genetic break in the majority of species that is geographically coincident with the zone of increased species turnover. Analyses of these and 12 additional Inga species shared between two communities located on opposite sides of the zone showed that the populations experienced divergence 42,000-612,000 y ago. Our results suggest that the observed distance decay is the result not of environmental gradients or dispersal limitation coupled with ecological drift--as conventionally interpreted under neutral ecological theory--but rather of secondary contact between historically separated communities. Thus, even at this small spatial scale, historical processes seem to significantly impact species' distributions and community assembly. Other documented zones of increased species turnover found in the western Amazon basin or elsewhere may be related to similar historical processes.
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Affiliation(s)
- Kyle G. Dexter
- Biology Department, University Program in Genetics and Genomics and
| | - John W. Terborgh
- Center for Tropical Conservation, Nicholas School of the Environment and Earth Sciences, Duke University, Durham, NC 27708
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Paine CET, Norden N, Chave J, Forget PM, Fortunel C, Dexter KG, Baraloto C. Phylogenetic density dependence and environmental filtering predict seedling mortality in a tropical forest. Ecol Lett 2011; 15:34-41. [PMID: 22004454 DOI: 10.1111/j.1461-0248.2011.01705.x] [Citation(s) in RCA: 98] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Negative density dependence (NDD) and environmental filtering (EF) shape community assembly, but their relative importance is poorly understood. Recent studies have shown that seedling's mortality risk is positively related to the phylogenetic relatedness of neighbours. However, natural enemies, whose depredations often cause NDD, respond to functional traits of hosts rather than phylogenetic relatedness per se. To understand the roles of NDD and EF in community assembly, we assessed the effects on seedling mortality of functional similarity, phylogenetic relatedness and stem density of neighbouring seedlings and adults in a species-rich tropical forest. Mortality risks increased for common species when their functional traits departed substantially from the neighbourhood mean, and for all species when surrounded by close relatives. This indicates that NDD affects community assembly more broadly than does EF, and leads to the tentative conclusion that natural enemies respond to phylogenetically correlated traits. Our results affirm the prominence of NDD in structuring species-rich communities.
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Swamy V, Terborgh J, Dexter KG, Best BD, Alvarez P, Cornejo F. Are all seeds equal? Spatially explicit comparisons of seed fall and sapling recruitment in a tropical forest. Ecol Lett 2010; 14:195-201. [DOI: 10.1111/j.1461-0248.2010.01571.x] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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