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Kitzberger F, Yang SM, Týč J, Bílý T, Nebesářová J. An advanced fast method for the evaluation of multiple immunolabelling using gold nanoparticles based on low-energy STEM. Sci Rep 2024; 14:10150. [PMID: 38698090 PMCID: PMC11065996 DOI: 10.1038/s41598-024-60314-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Accepted: 04/21/2024] [Indexed: 05/05/2024] Open
Abstract
We present a powerful method for the simultaneous detection of Au nanoparticles located on both sides of ultrathin sections. The method employs a high-resolution scanning electron microscope (HRSEM) operating in scanning transmission electron microscopy (STEM) mode in combination with the detection of backscattered electrons (BSE). The images are recorded simultaneously during STEM and BSE imaging at the precisely selected accelerating voltage. Under proper imaging conditions, the positions of Au nanoparticles on the top or bottom sides can be clearly differentiated, hence showing this method to be suitable for multiple immunolabelling using Au nanoparticles (NPs) as markers. The difference between the upper and lower Au NPs is so large that it is possible to apply common software tools (such as ImageJ) to enable their automatic differentiation. The effects of the section thickness, detector settings and accelerating voltage on the resulting image are shown. Our experimental results correspond to the results modelled in silico by Monte Carlo (MC) simulations.
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Affiliation(s)
- František Kitzberger
- Laboratory of Electron Microscopy, Institute of Parasitology, Biology Centre CAS, 370 05, České Budějovice, Czech Republic.
- Faculty of Science, University of South Bohemia, 370 05, České Budějovice, Czech Republic.
| | - Shun-Min Yang
- Laboratory of Evolutionary Protistology, Institute of Parasitology, Biology Centre CAS, 370 05, České Budějovice, Czech Republic
- Faculty of Science, University of South Bohemia, 370 05, České Budějovice, Czech Republic
| | - Jiří Týč
- Laboratory of Electron Microscopy, Institute of Parasitology, Biology Centre CAS, 370 05, České Budějovice, Czech Republic
| | - Tomáš Bílý
- Laboratory of Electron Microscopy, Institute of Parasitology, Biology Centre CAS, 370 05, České Budějovice, Czech Republic
- Faculty of Science, University of South Bohemia, 370 05, České Budějovice, Czech Republic
| | - Jana Nebesářová
- Laboratory of Electron Microscopy, Institute of Parasitology, Biology Centre CAS, 370 05, České Budějovice, Czech Republic.
- Faculty of Science, Charles University, 128 00, Prague 2, Czech Republic.
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2
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Huang HH, Miyata T, Sato YK, Mizoguchi T, Jinnai H, Yoshida K. Microscopic chemical characterization of epoxy resin with scanning transmission electron microscopy - electron energy-loss spectroscopy. Micron 2024; 180:103623. [PMID: 38461563 DOI: 10.1016/j.micron.2024.103623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Revised: 02/25/2024] [Accepted: 03/03/2024] [Indexed: 03/12/2024]
Abstract
The structural characterization of epoxy resins is essential to improve the understanding on their structure-property relationship for promising high-performance applications. Among all analytical techniques, scanning transmission electron microscopy-electron energy-loss spectroscopy (STEM-EELS) is a powerful tool for probing the chemical and structural information of various materials at a high spatial resolution. However, for sensitive materials, such as epoxy resins, the structural damage induced by electron-beam irradiation limits the spatial resolution in the STEM-EELS analysis. In this study, we demonstrated the extraction of the intrinsic features and structural characteristics of epoxy resins by STEM-EELS under electron doses below 1 e-/Å2 at room temperature. The reliability of the STEM-EELS analysis was confirmed by X-ray absorption spectroscopy and spectrum simulation as low- or non-damaged reference data. The investigation of the dependence of the epoxy resin on the electron dose and exposure time revealed the structural degradation associated with electron-beam irradiation, exploring the prospect of EELS for examining epoxy resin at low doses. Furthermore, the degradation mechanisms in the epoxy resin owing to electron-beam irradiation were revealed. These findings can promote the structural characterization of epoxy-resin-based composites and other soft materials.
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Affiliation(s)
- Hsin-Hui Huang
- Japan Fine Ceramics Center, 2-4-1 Mutsuno, Atsuta-ku, Nagoya 456-8587, Japan.
| | - Tomohiro Miyata
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Yohei K Sato
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Teruyasu Mizoguchi
- Institute of Industrials Science, The University of Tokyo, 4-6-1 Komaba, Meguro, Tokyo 153-8505, Japan
| | - Hiroshi Jinnai
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Kaname Yoshida
- Japan Fine Ceramics Center, 2-4-1 Mutsuno, Atsuta-ku, Nagoya 456-8587, Japan.
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Yahagi T. A novel embedding composition for the evaluation of the internal structure of carbon materials using electron microscopy. Microscopy (Oxf) 2023; 72:511-514. [PMID: 36905307 DOI: 10.1093/jmicro/dfad020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Revised: 03/01/2023] [Accepted: 03/10/2023] [Indexed: 03/12/2023] Open
Abstract
The image contrast obtained in electron microscopy depends on the atomic number of the sample. Therefore, obtaining a clear contrast is challenging when samples composed of light elements (carbon materials and polymers) are embedded in the resin. Herein, a newly developed embedding composition exhibiting low viscosity and high electron density is reported, which can be solidified using physical or chemical methods. When used for carbon materials, this embedding composition allows clear microscopic observation with higher contrast compared to conventional resin embedding. Furthermore, details of the observation of samples such as graphite and carbon black using this embedding composition are reported.
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Affiliation(s)
- Tsukaho Yahagi
- Kawasaki Technical Support Department, Kanagawa Institute of Industrial Science and Technology, KSP East 1F, 3-2-1, Sakado, Takatsu-ku, Kawasaki, Kanagawa 213-0012, Japan
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Skoupý R, Boltje DB, Slouf M, Mrázová K, Láznička T, Taisne CM, Krzyžánek V, Hoogenboom JP, Jakobi AJ. Robust Local Thickness Estimation of Sub-Micrometer Specimen by 4D-STEM. SMALL METHODS 2023; 7:e2300258. [PMID: 37248805 DOI: 10.1002/smtd.202300258] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Revised: 04/21/2023] [Indexed: 05/31/2023]
Abstract
A quantitative four-dimensional scanning transmission electron microscopy (4D-STEM) imaging technique (q4STEM) for local thickness estimation across amorphous specimen such as obtained by focused ion beam (FIB)-milling of lamellae for (cryo-)TEM analysis is presented. This study is based on measuring spatially resolved diffraction patterns to obtain the angular distribution of electron scattering, or the ratio of integrated virtual dark and bright field STEM signals, and their quantitative evaluation using Monte Carlo simulations. The method is independent of signal intensity calibrations and only requires knowledge of the detector geometry, which is invariant for a given instrument. This study demonstrates that the method yields robust thickness estimates for sub-micrometer amorphous specimen using both direct detection and light conversion 2D-STEM detectors in a coincident FIB-SEM and a conventional SEM. Due to its facile implementation and minimal dose reauirements, it is anticipated that this method will find applications for in situ thickness monitoring during lamella fabrication of beam-sensitive materials.
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Affiliation(s)
- Radim Skoupý
- Institute of Scientific Instruments, Czech Academy of Sciences, Brno, 61264, CZ
- Department of Bionanoscience, Delft University of Technology, Delft, 2628 CD, NL
- Kavli Institute of Nanoscience, Delft University of Technology, Delft, 2628 CJ, NL
- Department of Imaging Physics, Delft University of Technology, Delft, 2628 CJ, NL
| | - Daan B Boltje
- Department of Imaging Physics, Delft University of Technology, Delft, 2628 CJ, NL
| | - Miroslav Slouf
- Institute of Macromolecular Chemistry, Czech Academy of Sciences, Prague, 162 00, CZ
| | - Kateřina Mrázová
- Institute of Scientific Instruments, Czech Academy of Sciences, Brno, 61264, CZ
| | - Tomáš Láznička
- Institute of Scientific Instruments, Czech Academy of Sciences, Brno, 61264, CZ
| | - Clémence M Taisne
- Department of Bionanoscience, Delft University of Technology, Delft, 2628 CD, NL
| | - Vladislav Krzyžánek
- Institute of Scientific Instruments, Czech Academy of Sciences, Brno, 61264, CZ
| | - Jacob P Hoogenboom
- Department of Imaging Physics, Delft University of Technology, Delft, 2628 CJ, NL
| | - Arjen J Jakobi
- Department of Bionanoscience, Delft University of Technology, Delft, 2628 CD, NL
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Identifying and imaging polymer functionality at high spatial resolution with core-loss EELS. Ultramicroscopy 2023; 246:113688. [PMID: 36701963 DOI: 10.1016/j.ultramic.2023.113688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 01/06/2023] [Accepted: 01/16/2023] [Indexed: 01/19/2023]
Abstract
Electron energy loss spectroscopy (EELS) is a proven tool for probing materials chemistry at high spatial resolution. Core-loss EELS fine structure should allow measurement of local polymer chemistry. For organic materials, sensitivity to radiolysis is expected to limit the resolution achievable with EELS: but core-loss EELS has proven difficult at any resolution, yielding inconsistent spectra that compare unfavorably with theoretically analogous x-ray absorption spectra. Many of the previously identified shortcomings should not be limiting factors on modern equipment. This study establishes that EELS can generate identifiable carbon K-edge spectra for a range of common polymer types and chemistry, and demonstrates fine structure features matching prior x-ray absorption spectra. EELS fine structure features broaden intuitively with the instrument's energy resolution, and beam-induced features are readily differentiated by collecting spectra at a series of doses. The results are demonstrated with spectrum images of a model polymer blend, and used to estimate practical pixel sizes that can be used for mapping core-loss EELS as a function of electron dose.
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Slouf M, Skoupy R, Pavlova E, Krzyzanek V. High Resolution Powder Electron Diffraction in Scanning Electron Microscopy. MATERIALS 2021; 14:ma14247550. [PMID: 34947146 PMCID: PMC8708290 DOI: 10.3390/ma14247550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 12/03/2021] [Accepted: 12/07/2021] [Indexed: 11/16/2022]
Abstract
A modern scanning electron microscope equipped with a pixelated detector of transmitted electrons can record a four-dimensional (4D) dataset containing a two-dimensional (2D) array of 2D nanobeam electron diffraction patterns; this is known as a four-dimensional scanning transmission electron microscopy (4D-STEM). In this work, we introduce a new version of our method called 4D-STEM/PNBD (powder nanobeam diffraction), which yields high-resolution powder diffractograms, whose quality is fully comparable to standard TEM/SAED (selected-area electron diffraction) patterns. Our method converts a complex 4D-STEM dataset measured on a nanocrystalline material to a single 2D powder electron diffractogram, which is easy to process with standard software. The original version of 4D-STEM/PNBD method, which suffered from low resolution, was improved in three important areas: (i) an optimized data collection protocol enables the experimental determination of the point spread function (PSF) of the primary electron beam, (ii) an improved data processing combines an entropy-based filtering of the whole dataset with a PSF-deconvolution of the individual 2D diffractograms and (iii) completely re-written software automates all calculations and requires just a minimal user input. The new method was applied to Au, TbF3 and TiO2 nanocrystals and the resolution of the 4D-STEM/PNBD diffractograms was even slightly better than that of TEM/SAED.
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Affiliation(s)
- Miroslav Slouf
- Institute of Macromolecular Chemistry of the Czech Academy of Sciences, Heyrovsky Sq. 2, 16206 Prague, Czech Republic;
- Correspondence: (M.S.); (V.K.)
| | - Radim Skoupy
- Institute of Scientific Instruments of the Czech Academy of Sciences, Kralovopolska 147, 61264 Brno, Czech Republic;
| | - Ewa Pavlova
- Institute of Macromolecular Chemistry of the Czech Academy of Sciences, Heyrovsky Sq. 2, 16206 Prague, Czech Republic;
| | - Vladislav Krzyzanek
- Institute of Scientific Instruments of the Czech Academy of Sciences, Kralovopolska 147, 61264 Brno, Czech Republic;
- Correspondence: (M.S.); (V.K.)
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Srinivasa Raja A, de Boer P, Giepmans BNG, Hoogenboom JP. Electron-Beam Induced Luminescence and Bleaching in Polymer Resins and Embedded Biomaterial. Macromol Biosci 2021; 21:e2100192. [PMID: 34480515 DOI: 10.1002/mabi.202100192] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 08/16/2021] [Indexed: 11/11/2022]
Abstract
Electron microscopy is crucial for imaging biological ultrastructure at nanometer resolution. However, electron irradiation also causes specimen damage, reflected in structural and chemical changes that can give rise to alternative signals. Here, luminescence induced by electron-beam irradiation is reported across a range of materials widely used in biological electron microscopy. Electron-induced luminescence is spectrally characterized in two epoxy (Epon, Durcupan) and one methacrylate resin (HM20) over a broad electron fluence range, from 10-4 to 103 mC cm-2 , both with and without embedded biological samples. Electron-induced luminescence is pervasive in polymer resins, embedded biomaterial, and occurs even in fixed, whole cells in the absence of resin. Across media, similar patterns of intensity rise, spectral red-shifting, and bleaching upon increasing electron fluence are observed. Increased landing energies cause reduced scattering in the specimen shifting the luminescence profiles to higher fluences. Predictable and tunable electron-induced luminescence in natural and synthetic polymer media is advantageous for turning many polymers into luminescent nanostructures or to fluorescently visualize (micro)plastics. Furthermore, these findings provide perspective to direct electron-beam excitation approaches like cathodoluminescence that may be obscured by these nonspecific electron-induced signals.
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Affiliation(s)
- Aditi Srinivasa Raja
- Department of Imaging Physics, Delft University of Technology, Delft, 2628 CJ, The Netherlands
| | - Pascal de Boer
- Department of Biomedical Sciences of Cells and Systems, University of Groningen, University Medical Center Groningen, Groningen, 9713 GZ, The Netherlands
| | - Ben N G Giepmans
- Department of Biomedical Sciences of Cells and Systems, University of Groningen, University Medical Center Groningen, Groningen, 9713 GZ, The Netherlands
| | - Jacob P Hoogenboom
- Department of Imaging Physics, Delft University of Technology, Delft, 2628 CJ, The Netherlands
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Slouf M, Skoupy R, Pavlova E, Krzyzanek V. Powder Nano-Beam Diffraction in Scanning Electron Microscope: Fast and Simple Method for Analysis of Nanoparticle Crystal Structure. NANOMATERIALS (BASEL, SWITZERLAND) 2021; 11:962. [PMID: 33918700 PMCID: PMC8070269 DOI: 10.3390/nano11040962] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/20/2021] [Revised: 03/31/2021] [Accepted: 04/06/2021] [Indexed: 02/05/2023]
Abstract
We introduce a novel scanning electron microscopy (SEM) method which yields powder electron diffraction patterns. The only requirement is that the SEM microscope must be equipped with a pixelated detector of transmitted electrons. The pixelated detectors for SEM have been commercialized recently. They can be used routinely to collect a high number of electron diffraction patterns from individual nanocrystals and/or locations (this is called four-dimensional scanning transmission electron microscopy (4D-STEM), as we obtain two-dimensional (2D) information for each pixel of the 2D scanning array). Nevertheless, the individual 4D-STEM diffractograms are difficult to analyze due to the random orientation of nanocrystalline material. In our method, all individual diffractograms (showing randomly oriented diffraction spots from a few nanocrystals) are combined into one composite diffraction pattern (showing diffraction rings typical of polycrystalline/powder materials). The final powder diffraction pattern can be analyzed by means of standard programs for TEM/SAED (Selected-Area Electron Diffraction). We called our new method 4D-STEM/PNBD (Powder NanoBeam Diffraction) and applied it to three different systems: Au nano-islands (well diffracting nanocrystals with size ~20 nm), small TbF3 nanocrystals (size < 5 nm), and large NaYF4 nanocrystals (size > 100 nm). In all three cases, the STEM/PNBD results were comparable to those obtained from TEM/SAED. Therefore, the 4D-STEM/PNBD method enables fast and simple analysis of nanocrystalline materials, which opens quite new possibilities in the field of SEM.
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Affiliation(s)
- Miroslav Slouf
- Institute of Macromolecular Chemistry of the Czech Academy of Sciences, Heyrovsky Sq. 2, 162 06 Prague 6, Czech Republic;
| | - Radim Skoupy
- Institute of Scientific Instruments of the Czech Academy of Sciences, Kralovopolska 147, 612 64 Brno, Czech Republic;
| | - Ewa Pavlova
- Institute of Macromolecular Chemistry of the Czech Academy of Sciences, Heyrovsky Sq. 2, 162 06 Prague 6, Czech Republic;
| | - Vladislav Krzyzanek
- Institute of Scientific Instruments of the Czech Academy of Sciences, Kralovopolska 147, 612 64 Brno, Czech Republic;
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Skoupy R, Fort T, Krzyzanek V. Nanoscale Estimation of Coating Thickness on Substrates via Standardless BSE Detector Calibration. NANOMATERIALS 2020; 10:nano10020332. [PMID: 32075242 PMCID: PMC7075161 DOI: 10.3390/nano10020332] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Revised: 01/27/2020] [Accepted: 02/12/2020] [Indexed: 11/23/2022]
Abstract
The thickness of electron transparent samples can be measured in an electron microscope using several imaging techniques like electron energy loss spectroscopy (EELS) or quantitative scanning transmission electron microscopy (STEM). We extrapolate this method for using a back-scattered electron (BSE) detector in the scanning electron microscope (SEM). This brings the opportunity to measure the thickness not just of the electron transparent samples on TEM mesh grids, but, in addition, also the thickness of thin films on substrates. Nevertheless, the geometry of the microscope and the BSE detector poses a problem with precise calibration of the detector. We present a simple method which can be used for such a type of detector calibration that allows absolute (standardless) measurement of thickness, together with a proof of the method on test samples.
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