Persistence of Escherichia coli in batch and continuous vermicomposting systems

Household dog fecal composting: Current issues and future directions

Dog feces are a known source of nutrient, pathogen, and plastic pollution that can harm human and ecosystem health. Home composting may be a more environmentally sustainable method of managing dog feces and reducing this pollution. While composting is an established method for recycling animal manures into low-risk soil conditioners for food production, few studies have investigated whether household-scale compost methods can safely and effectively process dog feces for use in backyard edible gardens. A broad range of literature on in situ composting of dog feces is evaluated and compared according to scale, parameters tested, and compost methods used. Studies are analyzed based on key identified knowledge gaps: appropriate compost technologies to produce quality soil conditioner on small scales, potential for fecal pathogen disinfection in mesophilic compost conditions, and biodegradation of compostable plastic dog waste bags in home compost systems. This review also discusses how existing methods and quality standards for commercial compost can be adapted to dog fecal home composting. Priorities for future research are investigation of household-scale aerobic compost methods and potential compost amendments needed to effectively decompose dog feces and compostable plastic dog waste bags to produce a good-quality, sanitized, beneficial soil conditioner for use in home gardens. Integr Environ Assess Manag 2024;20:1876-1891. © 2024 The Author(s). Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).

Earthworm activity reduces bacterial pathogen loads in sewage sludge

Wastewater processing plants (WWTPs) produce large amounts of sewage sludge that are mainly disposed of on the land. This represents a health hazard due to the high loads of human bacterial pathogens (HBPs) the sludge generally contains. Vermicomposting, a mesophilic process, can reduce HBPs in organic wastes. This raises the question as to how earthworms eliminate HBPs. We aimed to determine whether earthworms reduce the levels or eliminate HBPs from sewage sludge and to establish whether the reduction/elimination occur during active (earthworm casts) or maturation (vermicompost) stages of vermicomposting. To this end, we analyzed HBPs (Escherichia coli O157, Listeria monocytogenes, Salmonella spp., and total E. coli) in sewage sludge samples from three WWTPs and the fresh earthworm casts and vermicomposts by using qPCR, to assess the impact of earthworms on reducing and/or eliminating HBPs. We did not detect either Salmonella spp. nor E. coli O157 in any of the samples. Earthworms removed or significantly reduced the amounts of E. coli and L. monocytogenes (mean relative abundances of 2.4 × 10-7 and 1.5 × 10-8 respectively) in the sewage sludge. Thus, the abundance of these HBPs was lower (or not present) in casts than in sewage sludge. This was also observed in vermicomposts (95% and 43% reduction in E. coli abundance in casts and vermicompost, respectively). Finally, our findings indicate that vermicompost derived from sewage sludge meets the requirements of organic fertilizers at least regarding the microbial pathogen content. Thus, vermicomposting seems to be a promising technique for managing municipal waste.

Opportunities and challenges in upcycling agri-food byproducts to generate insect manure (frass): A literature review

A range of issues related to sustainability in the agrifood industry have spurred interest in mass production of insects as human food and animal feed alternatives. This rapidly evolving sector addresses several challenges, including the management of food waste or agrifood by-products and the production of alternative animal proteins demonstrating low environmental impacts that improve sector circularity. The mass production of insects on agrifood processing wastes or by-products represents an opportunity to address these challenges. While the production of insects offers prospects for sustainable protein production, a major side stream is the production of frass or larval excrement including uneaten feed and chitin-rich exuviae (derived from multiple larval moults). The production of each tonne of edible insects generates 2 to 4 tonnes of frass with an interesting potential in agriculture versus traditional organic amendments (compost, manure, biochar). This review aims to demonstrate the characteristics of frass, its common harvest and conditioning methods, its optimal application rates for planting crops, the mechanisms by which it can protect plants against biotic and abiotic stresses and demystify the risks and potential associated with its application in agriculture. The characteristics of frass are compared with those of conventional fertilizers or other. This report also compiles the Canadian, US and European regulatory frameworks as a novel plant fertilizer and aims to pave the way for future research necessary for its valorization in plant production.

Fungus reduces tetracycline-resistant genes in manure treatment by predation of bacteria

New strategies to remove antibiotic resistance genes (ARGs), one of the most pressing threats to public health, are urgently needed. This study showed that the fungus Phanerochaete chrysosporium seeded to a composting reactor (CR) could remarkably reduce tetracycline-resistant genes (TRGs). The reduction efficiencies for the five main TRGs (i.e., tetW, tetO, tetM, tetPA, and tet(32)) increased by 8 to 100 folds compared with the control without P. chrysosporium, and this could be attributed to the decrease in the quantity of bacteria. Enumeration based on green fluorescence protein labeling further showed that P. chrysosporium became dominant in the CR. Meanwhile, the bacteria in the CR invaded the fungal cells via the cell wall defect of chlamydospore or active invasion. Most of the invasive bacteria trapped inside the fungus could not survive, resulting in bacterial death and the degradation of their TRGs by the fungal nucleases. As such, the predation of tetracycline-resistant bacteria by P. chrysosporium was mainly responsible for the enhanced removal of TRGs in the swine manure treatment. This study offers new insights into the microbial control of ARGs.

Vermicomposting technology - A perspective on vermicompost production technologies, limitations and prospects

The need for environmental sustainability while increasing the quantity, quality, and the rate of waste treatment to generate high-value environmental friendly fertilizer products is highly in demand. Vermicomposting is a good technology for the valorisation of industrial, domestic, municipal and agricultural wastes. Various vermicomposting technologies have been in use from time past to present. These technologies range from windrow, small - scale batch vermicomposting to large - scale continuous flow systems. Each of these processes has its own merits and demerits, necessitating advancement in the technology for efficient treatment of wastes. This work explores the hypothesis that the use of a continuous flow vermireactor system of a composite frame structure performs better than batch, windrow and other continuous systems operated in a single container. Following an in-depth review of the literature on vermicomposting technologies, treatment techniques, and reactor materials used, to explore the hypothesis, it was found that vermireactors operating in continuous flow fashion perform better in waste bioconversion than the batch and windrow techniques. Overall, the study concludes that batch techniques using plastic vermireactors predominate over the other reactor systems. However, the use of frame compartmentalized composite vermireactors performs considerably better in waste valorisation.

Vermicomposting of sewage sludge with organic bulking materials to improve its properties

Adverse properties of sewage sludge such as high concentration of toxic metals and the presence of pathogens have limited its use in agriculture. In this study, the effect of vermicomposting on some important chemical properties of sewage sludge was investigated as a factorial arrangement based on a completely randomized design with three replications. The studied factors were bulking agents in three concentrations (0, 5, and 10% v/v), earthworm (Eisenia fetida) in 2 different concentrations (0 and 50 adult earthworms/6 kg sewage sludge), and retention times in three levels (30, 60, and 90 days). Sewage sludge was obtained from the lagoons of Ghahdarijan refinery in Isfahan province in Iran. The results showed that vermicomposting significantly (p < 1%) reduced the number of coliforms and concentrations of Ni, Cr, and Pb and increased the organic carbon percent and N of the sewage sludge. When comparing different treatments, vermicomposting of sewage sludge with rice husk 10% v/v during retention times of 60 and 90 days were superior treatments in reducing the concentrations of Ni, Cr, and Pb and reducing the number of coliforms. Furthermore, the highest %OC was measured in the rice husk 10% + earthworm in the retention time of 90 days which was about 41% more than the control treatment. In general, it is concluded that vermicomposting significantly reduced the adverse properties of sewage sludge for using in agriculture as an organic fertilizer.

Earthworms drastically change fungal and bacterial communities during vermicomposting of sewage sludge

Wastewater treatment plants produce hundreds of million tons of sewage sludge every year all over the world. Vermicomposting is well established worldwide and has been successful at processing sewage sludge, which can contribute to alleviate the severe environmental problems caused by its disposal. Here, we utilized 16S and ITS rRNA high-throughput sequencing to characterize bacterial and fungal community composition and structure during the gut- and cast-associated processes (GAP and CAP, respectively) of vermicomposting of sewage sludge. Bacterial and fungal communities of earthworm casts were mainly composed of microbial taxa not found in the sewage sludge; thus most of the bacterial (96%) and fungal (91%) taxa in the sewage sludge were eliminated during vermicomposting, mainly through the GAP. Upon completion of GAP and during CAP, modified microbial communities undergo a succession process leading to more diverse microbiotas than those found in sewage sludge. Consequently, bacterial and fungal community composition changed significantly during vermicomposting. Vermicomposting of sewage resulted in a stable and rich microbial community with potential biostimulant properties that may aid plant growth. Our results support the use of vermicompost derived from sewage sludge for sustainable agricultural practices, if heavy metals or other pollutants are under legislation limits or adequately treated.

Cascading effects of composts and cover crops on soil chemistry, bacterial communities and the survival of foodborne pathogens

AIMS

Recent foodborne disease outbreaks have caused farmers to re-evaluate their practices. In particular, concern that soil amendments could introduce foodborne pathogens onto farms and promote their survival in soils has led farmers to reduce or eliminate the application of animal-based composts. However, organic amendments (such as composts and cover crops) could bolster food safety by increasing soil microbial diversity and activity, which can act as competitors or antagonists and reduce pathogen survival.

METHODS AND RESULTS

Leveraging a study of a 27-year experiment comparing organic and conventional soil management, we evaluate the impacts of composted poultry litter and cover crops on soil chemistry, bacterial communities and survival of Salmonella enterica and Listeria monocytogenes. We found that bacterial community composition strongly affected pathogen survival in soils. Specifically, organic soils managed with cover crops and composts hosted more macronutrients and bacterial communities that were better able to suppress Salmonella and Listeria. For example, after incubating soils for 10 days at 20°C, soils without composts retained fourfold to fivefold more Salmonella compared to compost-amended soils. However, treatment effects dissipated as bacterial communities converged over the growing season.

CONCLUSIONS

Our results suggest that composts and cover crops may be used to build healthy soils without increasing foodborne pathogen survival.

SIGNIFICANCE AND IMPACT OF THE STUDY

Our work suggests that animal-based composts do not promote pathogen survival and may even promote bacterial communities that suppress pathogens. Critically, proper composting techniques are known to reduce pathogen populations in biological soil amendments of animal origin, which can reduce the risks of introducing pathogens to farm fields in soil amendments. Thus, animal-based composts and cover crops may be a safe alternative to conventional fertilizers, both because of the known benefits of composts for soil health and because it may be possible to apply amendments in such a way that food-safety risks are mitigated rather than exacerbated.

Review on Stress Tolerance in Campylobacter jejuni

Campylobacter spp. are the leading global cause of bacterial colon infections in humans. Enteropathogens are subjected to several stress conditions in the host colon, food complexes, and the environment. Species of the genus Campylobacter, in collective interactions with certain enteropathogens, can manage and survive such stress conditions. The stress-adaptation mechanisms of Campylobacter spp. diverge from other enteropathogenic bacteria, such as Escherichia coli, Salmonella enterica serovar Typhi, S. enterica ser. Paratyphi, S. enterica ser. Typhimurium, and species of the genera Klebsiella and Shigella. This review summarizes the different mechanisms of various stress-adaptive factors on the basis of species diversity in Campylobacter, including their response to various stress conditions that enhance their ability to survive on different types of food and in adverse environmental conditions. Understanding how these stress adaptation mechanisms in Campylobacter, and other enteric bacteria, are used to overcome various challenging environments facilitates the fight against resistance mechanisms in Campylobacter spp., and aids the development of novel therapeutics to control Campylobacter in both veterinary and human populations.

Nutrient recovery from pineapple waste through controlled batch and continuous vermicomposting systems

The largest portion of pineapple peels and pulp generated from production points is disposed of haphazardly contributing to a number of environmental and health challenges. However, these wastes contain valuable plant nutrients that could be recovered to boost soil fertility, and increase agricultural production. This study evaluated the variation in physico-chemical parameters in batch and continuous vermicomposting systems as potential pathways for nutrient recovery from pineapple waste. The study compared the efficiency of waste reduction and nutrient recovery for batch (B), and continuous (C) vermicomposting systems during a 60-day period. The substrates were pineapple peels (PW), and cattle manure (CM) fed in a ratio of 4:1 (w/w). Control reactors were fed with 100% CM in both the feeding modes. Results indicated that waste degradation was 60%, and 54% while earthworm biomass increased by 57% and 129% for BPW, and CPW, respectively. pH significantly decreased with time in both systems. Total phosphorous increased with vermicomposting time with that of B being significantly higher than C systems. Nitrogen, potassium, and sodium significantly increased in the control experiments while the three elements significantly reduced for BPW, and CPW owing to high leachate production in the latter. The N, P, K, and C retention in vermicompost was 24.2%, 90.4%, 67.5%, 41.1%, and 32.6%, 91.2%, 79.3%, 46.1%, for BPW and CPW, respectively. Continuous systems produced higher earthworm biomass and retained more nutrients in vermicompost than batch systems, and can therefore, be recommended as better systems for pineapple waste vermicomposting.

Manure pretreatments with black soldier fly Hermetia illucens L. (Diptera: Stratiomyidae): A study to reduce pathogen content

This study aim was to investigate the influence of black soldier fly larvae (BSFL) Hermetia illucens L. (Diptera: Stratiomyidae) on pathogenic bacteria (PB) survival in the chicken manure (CM), pig manure (PM), cow manure (COM) and sewage sludge (SS) compost. Three kinds of manure [chicken (T2), pig (T4) and cow (T6)] and SS (T8) were inoculated with BSFL (1.2:7 ratio on fresh weight basis) and without BSFL (T1, T3, T5 and T7) was used as control and experiment lasted for 9 days. The results indicated that BSFL amendment 90-93% of PB abundances (RAs) was significantly mitigate in CM and COM (T2 and T6), and 86-88% in PM and SS compost. However, relatively greater abundance of PB was recorded in the T4 and T8 treatments. Most of the PB belong to Proteobacteria, Firmicutes, Actinobacteria and Bacteroidetes phylum and their community composition varied from phylum to species levels among the all treatments. The PB composition was significantly altered by BSFL amendment and also important role play to enhance in compost quality. Interestingly, Bacillus and Clostridium were significantly very less abundant present in BSFL applied treatments, but considerably higher population of these bacterial genus and its associated species were identifies from control or without BSFL applied treatments. Overall, without BSFL blended-all three kinds of manure-composts have comparatively greater PB abundance than with BSFL applied treatments, as the PB species Listeria_monocytogenes_FSL_R2-503, Staphylococcus_aureus_M0406, Bacillus_anthracis, Listeria_ivanovii, Staphylococcus_aureus_C0673, Salmonella Bacillus_cereus_VD115, Mycobacterium_tuberculosis_FJ05194 and Pseudomonas_aeruginosa has relatively greater RAs, followed by Bartonella_bacilliformis_Ver075; Bordetella_pertussis_2356847; Brucella_melitensis_ADMAS-G1; Klebsiella_pneumoniae_LCT-KP182 and Corynebacterium_jeikeium_K411 respectively. Thus, chicken manure composting with BSFL addition is efficient technology for the organic waste recycling and conversion of sanitized matured compost with significantly less abundance of pathogenic bacteria.

Elimination of antibiotic resistance genes and human pathogenic bacteria by earthworms during vermicomposting of dewatered sludge by metagenomic analysis

This study used a metagenomic approach to investigate the effects of earthworms on ARGs and HPB during the vermicomposting of dewatered sludge. Results showed that 139 types of ARGs were found in sludge vermicompost, affiliated to 30 classes. Compared with the control, the total abundance of ARGs in sludge vermicompost decreased by 41.5%. Moreover, the types and sequences of plasmids and integrons were also decreased by vermicomposting. Proteobacteria and Actinobacteria were the most dominant hosts of ARGs in sludge vermicompost. In addition, earthworms reduced the total HPB abundance and modified their diversity, thus leading to higher abundance of Enterobacteriaceae in sludge vermicompost. However, the sludge vermicompost was still ARG and HPB enriched, indicating a remaining environmental risk for agricultural purpose. The observed change of microbial community and the reduction of mobile genetic elements caused by earthworm activity are the main reasons for the alleviation of ARG pollution during vermicomposting.

Resistome metagenomics from plate to farm: The resistome and microbial composition during food waste feeding and composting on a Vermont poultry farm

Food waste diversion and composting, either mandated or voluntary, are growing alternatives to traditional waste disposal. An acceptable source of agricultural feed and composting material, methane-emitting food residuals, including post-consumer food scraps, are diverted from landfills allowing recapture of nutrients that would otherwise be lost. However, risk associated with the transfer of antimicrobial resistant bacteria (ARB), antibiotic resistance genes (ARGs), or pathogens from food waste is not well characterized. Using shotgun metagenomic sequencing, ARGs, microbial content, and associated virulence factors were successfully identified across samples from an integrated poultry farm that feeds post-consumer food waste. A total of 495 distinct bacterial species or sub-species, 50 ARGs, and 54 virulence gene sequences were found. ARG sequences related to aminoglycoside, tetracycline, and macrolide resistance were most prominent, while most virulence gene sequences were related to transposon or integron activity. Microbiome content was distinct between on-farm samples and off-farm food waste collection sites, with a reduction in pathogens throughout the composting process. While most samples contained some level of resistance, only 3 resistance gene sequences occurred in both on- and off-farm samples and no multidrug resistance (MDR) gene sequences persisted once on the farm. The risk of incorporating novel or multi-drug resistance from human sources appears to be minimal and the practice of utilizing post-consumer food scraps as feed for poultry and composting material may not present a significant risk for human or animal health. Pearson correlation and co-inertia analysis identified a significant interaction between resistance and virulence genes (P = 0.05, RV = 0.67), indicating that ability to undergo gene transfer may be a better marker for ARG risk than presence of specific bacterial species. This work expands the knowledge of ARG fate during food scrap animal feeding and composting and provides a methodology for reproducible analysis.

Vermicomposting process for treating animal slurry in Latin American rural areas

The management of animal slurry is a big issue in low-income rural areas worldwide. Bolivia suffers this issue related to collection, treatment and final disposal since the main solution applied is the open dumping. The aim of this study is to introduce a feasible treatment of animal slurry in the rural area of Carmen Pampa, where about 670 kg of dung are produced per day and disposed of in open areas. The objective is the improvement of the environmental sustainability and human health, providing an alternative solution for encouraging the circular economy. The study is focused on the vermicomposting process, a sustainable solution for low-income regions. The analysis was conducted in function of the earthworm breeds used locally ( Eisenia fetida and Lumbricus terrestris) and the application of activated bacteria (AB) for improving the process. The mass loss, the treatment time, and the growing rate of the earthworms were analyzed. The results suggest that the different breed of the worms allows gaining up to 19 days, while the use of the AB allows saving about 30 days. Moreover, the vermicomposting process reduced the mass of the slurry of about 65% for the swine's dung and the bovine's dung, and 90% of the hens' dung. Finally, experimental evidence shows that the growing rate of the E. fetida is higher than the L. terrestris (F[1,8] = 78, p < 0.05), with an average of about 193%. The data obtained could be of interest for other stakeholders who live in similar environmental, climatic, and economic conditions for improving sustainability.

An assessment of the persistence of pathogenic bacteria removal in chicken manure compost employing clay as additive via meta-genomic analysis

The aim was to evaluate pathogenic bacteria (PB) survival during the composting of chicken manure (CM) amended with five different dosages of clay compared to CM without clay-applied treatment. The results showed that 85-87% of PB relative abundances (RAs) were significantly reduced in lower dosages of applied clay (T2 and T3). However, the maximum survival of PB was noticed in the T6 and T5 treatments, but most of the PB belong to Firmicutes, Actinobacteria and Proteobacteria phylum and their derivative bacterial species. The changes in PB during the composting were not only strongly influenced by clay amendment but also significantly associated with the succession of bacterial species in compost. Bacillus, Clostridium, Mycobacterium and Klebsiella were the dominant spore-forming bacteria identified in higher dosages of clay (i.e., T4, T5 and T6) treatments, but very low abundance of these bacterial genus and its species were recovered from lower dosages of clay (T2 and T3)-applied treatments. Overall, without clay, amended-CM-derived compost contained a relatively higher PB abundance than other treatments, as the anaerobic bacterial species Clostridium_difficile_AA1, Vibrio_cholerae, and Acinetobacter_calcoaceticus had relatively greater RAs, followed by Klebsiella_oxytoca_10-5248, Paenibacillus_Bacillus_cereus and Bartonella_quintana_RM-11. Thus, CM composting with 4% clay amendment is considered a useful method for the efficient recycling of CM, as this process produced sanitized compost with less survival of PB.

Preliminary evaluation of pathogenic bacteria loading on organic Municipal Solid Waste compost and vermicompost

The use of composts or vermicomposts derived from organic fraction of Municipal Solid Waste (OFMSW) brought about certain disagreement in terms of high level of bacterial pathogens, thereby surpassing the legal restrictions. This preliminary study was undertaken to compare the evolution of pathogenic bacteria on OFMSW compost against vermicompost (generated by Eudrilus eugeniae) with promises of achieving sanitation goals. Analysis to quality data showed that OFMSW vermicomposting caused a moderately higher reduction in total coliforms in contrast to composting. E. coli in OFMSW composts was found to be in the range of 4.72-4.96 log₁₀ CFU g^-1 whilst on a clear contrary, E. coli was undetectable in the final vermicomposts (6.01-6.14 logs of reduction) which might be explained by the involvement of the digestive processes in worms' guts. Both OFMSW composts and vermicomposts generated Salmonella-free products which were acceptable for agricultural usage and soil improvement. In comparison to compost, the analysis of this research indicated that earthworm activity can effectively destroy bacterial pathogenic load in OFMSW vermicomposts. But still, this study necessitates extra research in order to comprehend the factors that direct pathogenic bacteria in vermicomposting and earthworm-free decomposition systems.

Inactivation of bacterial pathogenic load in compost against vermicompost of organic solid waste aiming to achieve sanitation goals: A review

Waste management strategies for organic residues, such as composting and vermicomposting, have been implemented in some developed and developing countries to solve the problem of organic solid waste (OSW). Yet, these biological treatment technologies do not always result in good quality compost or vermicompost with regards to sanitation capacity owing to the presence of bacterial pathogenic substances in objectionable concentrations. The presence of pathogens in soil conditioners poses a potential health hazard and their occurrence is of particular significance in composts and/or vermicomposts produced from organic materials. Past and present researches demonstrated a high-degree of agreement that various pathogens survive after the composting of certain OSW but whether similar changes in bacterial pathogenic loads arise during vermitechnology has not been thoroughly elucidated. This review garners information regarding the status of various pathogenic bacteria which survived or diffused after the composting process compared to the status of these pathogens after the vermicomposting of OSW with the aim of achieving sanitation goals. This work is also indispensable for the specification of compost quality guidelines concerning pathogen loads which would be specific to treatment technology. It was hypothesized that vermicomposting process for OSW can be efficacious in sustaining the existence of pathogenic organisms most specifically; human pathogens under safety levels. In summary, earthworms can be regarded as a way of obliterating pathogenic bacteria from OSW in a manner equivalent to earthworm gut transit mechanism which classifies vermicomposting as a promising sanitation technique in comparison to composting processes.