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Sun P, Fan K, Jiang Y, Chu H, Chen Y, Wu Y. Accumulated temperature dictates the regional structural variation of prokaryotic periphyton at soil-water interface in paddy fields. WATER RESEARCH 2024; 265:122259. [PMID: 39154398 DOI: 10.1016/j.watres.2024.122259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 07/30/2024] [Accepted: 08/12/2024] [Indexed: 08/20/2024]
Abstract
As a pervasive microbial aggregate found at the water-soil interface in paddy fields, periphyton plays crucial roles in modulating nutrient biogeochemical cycling. Consequently, it effectively mitigates non-point source pollution due to its diverse composition. Despite its significance, the mechanisms governing periphyton diversity across different rice planting regions remain poorly understood. To bridge this gap, we investigated periphyton grown in 200 paddy fields spanning 25° of latitude. Initially, we analyzed local diversity and latitudinal variations in prokaryotic communities within paddy field periphyton, identifying 7 abundant taxa, 42 moderate taxa, and 39 rare taxa as the fundamental prokaryotic framework. Subsequently, to elucidate the mechanisms governing periphyton diversity across large scales, we constructed interaction models illustrating triangular relationships among local richness, assembly, and regional variation of prokaryotic subcommunities. Our findings suggest that accumulated temperature-driven environmental filtering partially influences the assembly process of prokaryotes, thereby impacting local species richness and ultimately governing regional structural variations in periphyton. Furthermore, we determined that a latitude of 39° represents the critical threshold maximizing local species richness of periphyton in paddy fields. This study advances our understanding of the factors shaping periphyton geo-imprints and provides valuable insights into predicting their responses to environmental changes, potentially influencing rice production outcomes.
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Affiliation(s)
- Pengfei Sun
- Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No.298 Chuangyou Road, Nanjing 211135, China; School of Life Sciences, University of Warwick, Coventry CV4 7AL, UK; University of Chinese Academy of Sciences, No.188, Tianquan Road, Nanjing 211135, China
| | - Kunkun Fan
- Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No.298 Chuangyou Road, Nanjing 211135, China; University of Chinese Academy of Sciences, No.188, Tianquan Road, Nanjing 211135, China
| | - Yuji Jiang
- Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No.298 Chuangyou Road, Nanjing 211135, China; University of Chinese Academy of Sciences, No.188, Tianquan Road, Nanjing 211135, China
| | - Haiyan Chu
- Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No.298 Chuangyou Road, Nanjing 211135, China; University of Chinese Academy of Sciences, No.188, Tianquan Road, Nanjing 211135, China
| | - Yin Chen
- School of Biosciences, The University of Birmingham, Birmingham B15 2TT, UK.
| | - Yonghong Wu
- Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No.298 Chuangyou Road, Nanjing 211135, China; University of Chinese Academy of Sciences, No.188, Tianquan Road, Nanjing 211135, China.
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2
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Jin J, Fang Y, Liu C, Eltohamy KM, He S, Li F, Lu Y, Liang X. Reduced colloidal phosphorus release from paddy soils: A synergistic effect of micro-/nano-sized biochars and intermittent anoxic condition. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 905:167104. [PMID: 37717774 DOI: 10.1016/j.scitotenv.2023.167104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 09/09/2023] [Accepted: 09/13/2023] [Indexed: 09/19/2023]
Abstract
Colloidal phosphorus (CP) has high mobility and great loss risk; their biogeochemical processes are influenced by agricultural management such as redox oscillation and biochar-amendment application. This study monitored CP concentration in pore-water, soil P species and P adsorption capacity, to investigate CP release from paddy soils as affected by the interactive effects of oxygen status (continuous anoxic/oxic for 12 days, CA/CO; intermittent anoxic for 2, 4, 6, 8, 10 days during the 12-day cycle, IA2-10) and management (soil only, CK; bulk/micro/nano-sized biochar with various properties: SBBulk, SBMicro, and SBNano). Compared to the control (0.25-0.84 mg L-1, CK-CA), the single intermittent anoxic treatment (CK-IA) reduced CP concentrations by 45 %, due to the rise of Eh and pH and the decline of the degree of P saturation along with the increased soil Fe/Al-P and organic-P. Longer anoxic duration under the CK-IA reduced CP release, probably donated from massive production of redox-stable amorphous Fe/Al-bound P. The single biochar treatment (SB-CA: SBBulk-CA > SBMicro-CA > SBNano-CA) decreased CP release by 37 % as compared to the CK-CA, ascribed to the increased soil pH, Eh, and P adsorption capacity. The combined treatment (SB-IA: SBBulk-IA2 > SBNano-IA10) synergistically reduced CP release by 68 % in comparison with the CK-CA, due to the increase of adsorption through interactions of soil Fe/Al/Ca- and organic-P. Therefore, nano-sized biochar and long intermittent anoxic duration are recommended for reducing CP release from paddy soils.
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Affiliation(s)
- Junwei Jin
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, College of Environmental and Resources Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Yunying Fang
- Australian Rivers Institute, School of Environment and Science, Griffith University, Nathan, Campus, Queensland 4111, Australia
| | - Chunlong Liu
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 130102, PR China
| | - Kamel Mohamed Eltohamy
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, College of Environmental and Resources Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Shuang He
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, College of Environmental and Resources Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Fayong Li
- College of Water Resources and Architectural Engineering, Tarim University, Xinjiang 843300, PR China
| | - Yuanyuan Lu
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, College of Environmental and Resources Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Xinqiang Liang
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, College of Environmental and Resources Sciences, Zhejiang University, Hangzhou 310058, PR China; Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 130102, PR China.
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3
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Guo Y, Lu Y, Eltohamy KM, Liu C, Fang Y, Guan Y, Liu B, Yang J, Liang X. Contribution of Biogas Slurry-Derived Colloids to Plant P Uptake and Phosphatase Activities: Spatiotemporal Response. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:16564-16574. [PMID: 37862689 DOI: 10.1021/acs.est.3c05108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2023]
Abstract
The bioavailability for varied-size phosphorus (P)-binding colloids (Pcoll) especially from external P sources in soil terrestrial ecosystems remains unclear. This study evaluated the differential contribution of various-sized biogas slurry (BS)-derived colloids to plant available P uptake in the rhizosphere and the corresponding patterns of phosphatase response. Keeping the same content of total P input (15 mg kg-1), we applied different size-fractioned BS-derived colloids including nanosized colloids (NCs, 1-20 nm), fine-sized colloids (FCs, 20-220 nm), and medium-sized colloids (MCs, 220-450 nm) respectively to conduct a 45-day rice (Oryza sativa L.) rhizotron experiment. During the whole cultivation period, the dynamics of chemical characteristics and P fractions in each experimental rhizosphere soil solution were analyzed. The spatial and temporal dynamics examination of P-transforming enzymes (acid phosphatases) in the rice rhizosphere was visualized by a soil zymography technique after 5, 25, and 45 days of rice transplantation. The results indicated that the acid phosphatase activities and its hot spot areas were significantly 1) correlated with the relative bioavailability of colloidal P (RBAcoll), 2) increased with the colloid-free (truly dissolved P) and BS-derived NC addition, and 3) affected by the plant growth stage. With the nanosized BS colloid addition, the RBAcoll and plant biomass were respectively found to be the highest (64% and 1.22 g plant-1), in which the acid phosphatase-catalyzed hydrolysis of organic Pcoll played an important role. All of the above suggested that nanosized BS-derived colloids are an effective alternative to conventional phosphorus fertilizer for promoting plant P uptake and P bioavailability.
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Affiliation(s)
- Yuxin Guo
- Key Laboratory of Watershed Non-Point Source Pollution Control and Water Eco-Security of Ministry of Water Resources, College of Environmental and Resources Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yuanyuan Lu
- Key Laboratory of Watershed Non-Point Source Pollution Control and Water Eco-Security of Ministry of Water Resources, College of Environmental and Resources Sciences, Zhejiang University, Hangzhou 310058, China
| | - Kamel Mohamed Eltohamy
- Key Laboratory of Watershed Non-Point Source Pollution Control and Water Eco-Security of Ministry of Water Resources, College of Environmental and Resources Sciences, Zhejiang University, Hangzhou 310058, China
- Department of Water Relations & Field Irrigation, National Research Centre, Dokki, Cairo 12622, Egypt
| | - Chunlong Liu
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Yunying Fang
- Australian Rivers Institute and School of Environment and Science, Griffith University, Nathan Campus, Queensland 4111, Australia
| | - Yajing Guan
- Seed Science Center, Institute of Crop Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang Province 310058, China
| | - Boyi Liu
- Key Laboratory of Watershed Non-Point Source Pollution Control and Water Eco-Security of Ministry of Water Resources, College of Environmental and Resources Sciences, Zhejiang University, Hangzhou 310058, China
| | - Jiao Yang
- Key Laboratory of Watershed Non-Point Source Pollution Control and Water Eco-Security of Ministry of Water Resources, College of Environmental and Resources Sciences, Zhejiang University, Hangzhou 310058, China
| | - Xinqiang Liang
- Key Laboratory of Watershed Non-Point Source Pollution Control and Water Eco-Security of Ministry of Water Resources, College of Environmental and Resources Sciences, Zhejiang University, Hangzhou 310058, China
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
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4
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Kuang X, Peng L, Cheng Z, Zhou S, Chen S, Peng C, Song H, Li C, Li D. Fertilizer-induced manganese oxide formation enhances cadmium removal by paddy crusts from irrigation water. JOURNAL OF HAZARDOUS MATERIALS 2023; 458:132030. [PMID: 37441865 DOI: 10.1016/j.jhazmat.2023.132030] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Revised: 06/27/2023] [Accepted: 07/09/2023] [Indexed: 07/15/2023]
Abstract
Fertilization is a crucial agrological measure for agricultural production that can significantly impact the removal of Cd from irrigation water by paddy crusts (PC). In this study, laboratory and field experiments were conducted to investigate the impact of fertilization at low, medium, and high concentrations on the accumulation of Cadmium (Cd) in PC and the underlying mechanisms involved. The results showed that only low fertilizer concentration could promote the removal of Cd by PC, which reduced the Cd concentration in irrigation water from 19.52 μg/L to 5.35 μg/L. Conversely, medium and high fertilizer concentrations reduced the accumulation of Cd by PC. After fertilizer addition, the proportion of Fe-Mn oxidizable-Cd in PC reached 55 % (with low concentration of fertilizer treatment). The application of low concentration of fertilizer was found to stimulate the growth of filamentous green algae, leading to a significant increase in the relative abundance of sphingomonadaceae (by 1.39 %) and comamonadaceae (by 1.29 %). The XRD, SEM and correlation analysis show that a large amount of manganese oxide is formed on the surface of PC, which increases the fixation of Cd. These findings provide a new perspective for the remediation of heavy metal contamination in paddy fields.
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Affiliation(s)
- Xiaolin Kuang
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China
| | - Liang Peng
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China.
| | - Ziyi Cheng
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China
| | - Siyan Zhou
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China
| | - Shaoning Chen
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China
| | - Cheng Peng
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China
| | - Huijuan Song
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China
| | - Changwu Li
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China
| | - Dan Li
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China
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5
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Liu J, Wu L, Gong L, Wu Y, Tanentzap AJ. Phototrophic Biofilms Transform Soil-Dissolved Organic Matter Similarly Despite Compositional and Environmental Differences. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:4679-4689. [PMID: 36893311 DOI: 10.1021/acs.est.2c08541] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Dissolved organic matter (DOM) is the most reactive pool of organic carbon in soil and one of the most important components of the global carbon cycle. Phototrophic biofilms growing at the soil-water interface in periodically flooding-drying soils like paddy fields consume and produce DOM during their growth and decomposition. However, the effects of phototrophic biofilms on DOM remain poorly understood in these settings. Here, we found that phototrophic biofilms transformed DOM similarly despite differences in soil types and initial DOM compositions, with stronger effects on DOM molecular composition than soil organic carbon and nutrient contents. Specifically, growth of phototrophic biofilms, especially those genera belonging to Proteobacteria and Cyanobacteria, increased the abundance of labile DOM compounds and richness of molecular formulae, while biofilm decomposition decreased the relative abundance of labile components. After a growth and decomposition cycle, phototrophic biofilms universally drove the accumulation of persistent DOM compounds in soil. Our results revealed how phototrophic biofilms shape the richness and changes in soil DOM at the molecular level and provide a reference for using phototrophic biofilms to increase DOM bioactivity and soil fertility in agricultural settings.
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Affiliation(s)
- Junzhuo Liu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China
- Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resources of the People's Republic of China, Yichang 443605, China
| | - Lirong Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China
- College of Resource and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lina Gong
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China
- Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resources of the People's Republic of China, Yichang 443605, China
| | - Yonghong Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China
- Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resources of the People's Republic of China, Yichang 443605, China
| | - Andrew J Tanentzap
- Ecosystems and Global Change Group, School of the Environment, Trent University, Peterborough, Ontario K9L 0G2, Canada
- Ecosystems and Global Change Group, Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, U.K
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6
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Kuang X, Peng L, Chen S, Peng C, Song H. Immobilization of metal(loid)s from acid mine drainage by biological soil crusts through biomineralization. JOURNAL OF HAZARDOUS MATERIALS 2023; 443:130314. [PMID: 36368071 DOI: 10.1016/j.jhazmat.2022.130314] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Revised: 10/17/2022] [Accepted: 11/01/2022] [Indexed: 06/16/2023]
Abstract
Acid mine drainage is harmful to the environment. Bioremediation based on biological soil crusts (BSCs) can be used as a new method to alleviate metal pollution in acid mine drainage. In this study, we found that BSCs can survive in a strongly acidic environment (pH = 3.28) and have a high metal(loid)s accumulation ability. The algae of genera Fragilaria, Klebsormidium, Cymbella, Melosira, Microcystacea, and Planctonema a're the main components of BSCs. These organisms in the BSCs regulated fatty acids and produced acid-resistant enzymes. The bioconcentration factors for As, Cd, Pb, Zn, and Cu were as high as 16,000, 200, 50, 26, and 400, respectively. The concentration of As and Cd in acid mine drainage decreased from 7.1 μg and 350 μg/L to 1.9 μg and 110 μg/L, respectively. In total, 56% of As, 73% of Cd, 88% of Pb, 85% of Zn, and 92% of Cu were present in BSCs as residual or mineral-bound forms. The XRD results (e.g., quarartz and phyllosilicates), SEM results (e.g., phylosilicates and diatom shells) and correlation results show that these metal(loid)s are immobilized by Cymbella (diatoms) during the deposition of silica in the acidic environment. Furthermore, adsorption and co-precipitation are other ways that metal(loid)s could have been bound. These findings provide new insights into the removal of metals (loid) in acidic water.
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Affiliation(s)
- Xiaolin Kuang
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China
| | - Liang Peng
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China.
| | - Shaoning Chen
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China
| | - Chen Peng
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China
| | - Huijuan Song
- Department of Environmental Science & Engineering, Hunan Agricultural University, Changsha 410128, China
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7
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Yang L, Yang Q, Lin L, Luan T, Tam NFY. Characterization of benthic biofilms in mangrove sediments and their variation in response to nutrients and contaminants. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 857:159391. [PMID: 36240915 DOI: 10.1016/j.scitotenv.2022.159391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 09/30/2022] [Accepted: 10/08/2022] [Indexed: 06/16/2023]
Abstract
Diatom-dominated biofilms and associated extracellular polymeric substances (EPS) may adapt to the stress of long-term exposure to nutrients and anthropogenic contaminants. However, such interactions in contaminated mangrove sediments have rarely been reported. Based on the in situ characterization of biofilm components and environmental factors, the present study aimed to explore the key factors involved in shaping sediment biofilms through correlational and multivariate analyses. The pennate diatom Navicula is the core taxon that plays a crucial role in balancing the abundance of Nitzschia and Cyclotella, and is the main producer of bound-polysaccharides. The taxa composition shifts in a high N/P matrix, with the populations of pennate diatoms increasing but that of centric diatoms decreasing. High nutrient concentrations yield more number of diatoms and elevated levels of EPS. Bacteria are the main consumers of EPS and tend to be more symbiotic with Nitzschia than the other two diatom taxa. Some bound-polysaccharides dominated by arabinose and glucose units are transformed into the colloidal fraction, whereas other conservative ones serve as structural materials in concert with the bound-proteins. The planktonic phase of Cyclotella breaks down the structural EPS secreted by pennate diatoms in a process that directly affects the dynamic renewal of benthic biofilms. Most heavy metals as well as bisphenol A inhibit the abundance of bacteria and diatoms but enhance most EPS fractions except bound-polysaccharides. The response of structural EPS to specific contaminants varies, exhibiting increases in Co and Ni levels but decreases in nonylphenol and methylparaben levels. The present study improves our understanding of the microbial carbon loop of benthic biofilms in mangrove ecosystems under stress by nutrients and mixed contaminants.
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Affiliation(s)
- Lihua Yang
- South China Sea Bio-Resource Exploitation and Utilization Collaborative Innovation Center, Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering, School of Marine Sciences, Sun Yat-Sen University, Guangzhou 510275, China
| | - Qian Yang
- South China Sea Bio-Resource Exploitation and Utilization Collaborative Innovation Center, Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering, School of Marine Sciences, Sun Yat-Sen University, Guangzhou 510275, China; State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510600, China
| | - Li Lin
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, China
| | - Tiangang Luan
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, China.
| | - Nora F Y Tam
- School of Science and Technology, Hong Kong Metropolitan University, Hong Kong, China; State Key Laboratory of Marine Pollution and Department of Chemistry, City University of Hong Kong, Hong Kong, China.
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8
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Sun P, Chen Y, Liu J, Xu Y, Zhou L, Wu Y. Periphytic biofilms function as a double-edged sword influencing nitrogen cycling in paddy fields. Environ Microbiol 2022; 24:6279-6289. [PMID: 36335557 DOI: 10.1111/1462-2920.16277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Accepted: 11/01/2022] [Indexed: 11/07/2022]
Abstract
It remains unclear whether periphytic biofilms are beneficial to N cycling in paddy fields. Here, based on a national-scale field investigation covering 220 rice fields in China, the N accumulation potential of periphytic biofilms was found to decrease from 8.8 ± 2.4 to 4.5 ± 0.7 g/kg and 3.1 ± 0.6 g/kg with increasing habitat latitude and longitude, respectively. The difference in abundant and rare subcommunities likely accounts for their geo-difference in N accumulation potential. The N cycling pathways involved in periphytic biofilms inferred that soil N and N2 were two potential sources for N accumulation in periphytic biofilms. Meanwhile, some of the accumulated N may be lost via N2 , N2 O, NO, or NH3 outputs. Superficially, periphytic biofilms are double-edged swords to N cycling by increasing soil N through biological N fixation but accelerating greenhouse gas emissions. Essentially, augmented periphytic biofilms increased change of TN (ΔTN) content in paddy soil from -231.9 to 31.9 mg/kg, indicating that periphytic biofilms overall benefit N content enhancement in paddy fields. This study highlights the contribution of periphytic biofilms to N cycling in rice fields, thus, drawing attention to their effect on rice production and environmental security.
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Affiliation(s)
- Pengfei Sun
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resource of the Peoples' Republic of China, Shuitianba, Zigui, Yichang, China
| | - Yin Chen
- School of Life Sciences, University of Warwick, Coventry, UK
| | - Junzhuo Liu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resource of the Peoples' Republic of China, Shuitianba, Zigui, Yichang, China
| | - Ying Xu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resource of the Peoples' Republic of China, Shuitianba, Zigui, Yichang, China
| | - Lei Zhou
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resource of the Peoples' Republic of China, Shuitianba, Zigui, Yichang, China
| | - Yonghong Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resource of the Peoples' Republic of China, Shuitianba, Zigui, Yichang, China
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9
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Sun P, Liu Y, Sun R, Wu Y, Dolfing J. Geographic imprint and ecological functions of the abiotic component of periphytic biofilms. IMETA 2022; 1:e60. [PMID: 38867897 PMCID: PMC10989918 DOI: 10.1002/imt2.60] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 08/27/2022] [Accepted: 09/14/2022] [Indexed: 06/14/2024]
Abstract
We revealed abiotic components (extracellular polymeric substances, EPSs) in the periphytic biofilms. Further, the effect of the microbial community on the EPS, and the geodistribution patterns and ecological functions of the EPS were studied.
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Affiliation(s)
- Pengfei Sun
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil ScienceChinese Academy of SciencesNanjingChina
- Zigui Three Gorges Reservoir EcosystemObservation and Research Station of Ministry of Water Resource of the Peoples' Republic of China, Shuitianba, ZiguiYichangChina
| | - Yingyao Liu
- Changwang School of HonorsNanjing University of Information Science and TechnologyNanjingChina
| | - Rui Sun
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil ScienceChinese Academy of SciencesNanjingChina
- Zigui Three Gorges Reservoir EcosystemObservation and Research Station of Ministry of Water Resource of the Peoples' Republic of China, Shuitianba, ZiguiYichangChina
| | - Yonghong Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil ScienceChinese Academy of SciencesNanjingChina
- Zigui Three Gorges Reservoir EcosystemObservation and Research Station of Ministry of Water Resource of the Peoples' Republic of China, Shuitianba, ZiguiYichangChina
| | - Jan Dolfing
- Faculty of Engineering and EnvironmentNorthumbria UniversityNewcastle upon TyneUK
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10
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Chen Z, Dolfing J, Zhuang S, Wu Y. Periphytic biofilms-mediated microbial interactions and their impact on the nitrogen cycle in rice paddies. ECO-ENVIRONMENT & HEALTH (ONLINE) 2022; 1:172-180. [PMID: 38075597 PMCID: PMC10702904 DOI: 10.1016/j.eehl.2022.09.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 09/13/2022] [Accepted: 09/29/2022] [Indexed: 01/03/2024]
Abstract
Rice paddies are unique waterlogged wetlands artificially constructed for agricultural production. Periphytic biofilms (PBs) at the soil-water interface play an important role in rice paddies characterized by high nutrient input but low utilization efficiency. PBs are composed of microbial aggregates, including a wide variety of microorganisms (algae, bacteria, fungi, protozoa, and metazoa), extracellular polymeric substances and minerals (iron, aluminum, and calcium), which form an integrated food web and energy flux within a relatively stable micro-ecosystem. PBs are crucial to regulate and streamline the nitrogen cycle by neutralizing nitrogen losses and improving rice production since PBs can serve as both a sink by capturing surplus nitrogen and a source by slowly re-releasing this nitrogen for reutilization. Here the ecological advantages of PBs in regulating the nitrogen cycle in rice paddies are illustrated. We summarize the key functional importance of PBs, including the intricate and delicate community structure, microbial interactions among individual phylotypes, a wide diversity of self-produced organics, the active adaptation of PBs to constantly changing environments, and the intricate mechanisms by which PBs regulate the nitrogen cycle. We also identify the future challenges of microbial interspecific cooperation in PBs and their quantitative contributions to agricultural sustainability, optimizing nitrogen utilization and crop yields in rice paddies.
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Affiliation(s)
- Zhihao Chen
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
- Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resources of the People's Republic of China, Yichang 443605, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jan Dolfing
- Faculty of Energy and Environment, Northumbria University, Newcastle Upon Tyne NE1 8QH, UK
| | - Shunyao Zhuang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Yonghong Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
- Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resources of the People's Republic of China, Yichang 443605, China
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11
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Liu J, Lu H, Wu L, Kerr PG, Wu Y. Interactions between periphytic biofilms and dissolved organic matter at soil-water interface and the consequent effects on soil phosphorus fraction changes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 801:149708. [PMID: 34438149 DOI: 10.1016/j.scitotenv.2021.149708] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Revised: 08/09/2021] [Accepted: 08/12/2021] [Indexed: 06/13/2023]
Abstract
Dissolved organic matter (DOM) plays vital roles in carbon and other nutrient transformation at soil-water interfaces (SWI) in paddy fields. It is associated with the growth and withering of periphytic biofilms. However, the interactions between DOM and periphytic biofilms remain largely unknown. In this study, a microcosm experiment with different initial DOM contents elucidated that the biomass, and biomass nitrogen and phosphorus contents were greatly influenced by humic-like substances (C2 and C3), while the growth of periphytic biofilms increased the contents of humic-like (C1 and C2) and tryptophan-like substances (C5) in soil. Moreover, the decomposition of periphytic biofilms significantly increased soil pH, DOM, C2, C3 and C5 contents, but caused decrease in Eh, with consequent reduce in water soluble phosphorus (WSP) and release of algal available phosphorus (AAP). Results from this study revealed how DOM interacts with periphytic biofilms and the consequent effects on changes of bioactive phosphorus fractions, and provide practical information for designing periphytic biofilm based biofertilizer from the perspective of soil DOM.
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Affiliation(s)
- Junzhuo Liu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China; Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resources of the People's Republic of China, Yichang 443605, China.
| | - Haiying Lu
- Salt-soil Agricultural Center, Key Laboratory of Agricultural Environment in the Lower Reaches of Yangtze River Plain, Institute of Agricultural Resource and Environment, Jiangsu Academy of Agriculture Sciences, 50 Zhongling Road, Nanjing 210014, China
| | - Lirong Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China
| | - Philip G Kerr
- School of Dentistry and Medical Sciences, Charles Sturt University, Boorooma St., Wagga Wagga, NSW 2678, Australia
| | - Yonghong Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China; Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resources of the People's Republic of China, Yichang 443605, China
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12
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Sun P, Gao M, Sun R, Wu Y, Dolfing J. Periphytic biofilms accumulate manganese, intercepting its emigration from paddy soil. JOURNAL OF HAZARDOUS MATERIALS 2021; 411:125172. [PMID: 33858112 DOI: 10.1016/j.jhazmat.2021.125172] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2020] [Revised: 12/29/2020] [Accepted: 01/15/2021] [Indexed: 06/12/2023]
Abstract
Manganese (Mn) in acidic paddy soil has large potential in emigrating from the soil and pollute adjacent ecosystems. Single microorganisms modulate the biogeochemistry process of Mn via redox reactions, while the roles of microbial aggregates (e.g. periphytic biofilm) in modulating its biogeochemical cycle is poorly constrained. Here we collected a series of periphytic biofilms from acidic paddy fields in China to explore how periphytic biofilm regulates Mn behavior in paddy fields. We found that periphytic biofilms have large Mn accumulation potential: Mn contents in periphytic biofilm ranged from 176 ± 38 to 797 ± 271 mg/kg, which were 1.2-4.5 folds higher than that in the corresponding soils. Field experiments verified the Mn accumulation potential, underlining the biofilms function as natural barriers to intercept Mn emigrating from soil. Extracellular polymeric substances, especially the protein component, mediated adsorption was the main mechanism behind Mn accumulation by periphytic biofilm. Microorganisms in periphytic biofilms in general appeared to have inhibitory effects on Mn accumulation. Climatic conditions and nutrients in floodwater and soil affect the microorganisms, thus indirectly affecting Mn accumulation in periphytic biofilms. This study provides quantitative information on the extent to which microbial aggregates modulate the biogeochemistry of Mn in paddy fields.
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Affiliation(s)
- Pengfei Sun
- Zigui Ecological Station for Three Gorges Dam Project, State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China
| | - Mengning Gao
- Zigui Ecological Station for Three Gorges Dam Project, State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China
| | - Rui Sun
- Zigui Ecological Station for Three Gorges Dam Project, State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China
| | - Yonghong Wu
- Zigui Ecological Station for Three Gorges Dam Project, State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China; College of Hydraulic & Environmental Engineering, China Three Gorges University, Yichang 443002, Hubei, China.
| | - Jan Dolfing
- Faculty Energy and Environment, Northumbria University, Newcastle upon Tyne NE1 8QH, UK
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13
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Wang Y, Fan H, Keung Wong P, Wu Y, Rittmann B. Biodegradation of tetracycline using hybrid material (UCPs-TiO 2) coupled with biofilms under visible light. BIORESOURCE TECHNOLOGY 2021; 323:124638. [PMID: 33418351 DOI: 10.1016/j.biortech.2020.124638] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Revised: 12/25/2020] [Accepted: 12/26/2020] [Indexed: 06/12/2023]
Abstract
To develop a more green and effective method for tetracycline (TC) removal, a hybrid material (conversion phosphors-TiO2, UCPs-TiO2) was coupled with a biofilm to achieve enhanced removal of TC. The removal of TC by biofilm coupled with UCPs-TiO2 under visible light reached 82%, which was 35% higher than that in treatment using only the biofilm. Extracellular polymeric substance (EPS) promoted the production of hydroxyl radicals by UCPs-TiO2, as the EPS acted as an electron transfer medium and accelerated the TC mineralization. Biofilm in the coupled system tolerated TC stress by regulating its antibiotic resistance genes (ARG) and superoxidedismutase (SOD), and allowed it to maintain stable and efficient removal of TC. This study documents a method to couple a hybrid material with microbial aggregates, creating a promising system for removing refractory organics, such as TC, from water. The study also offers insight into the mechanisms underlying TC removal by microbial aggregates combined with new functional materials.
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Affiliation(s)
- Yu Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China; Key Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, School of Environmental & Chemical Engineering, Nanchang University, Nanchang 330031, China
| | - Hua Fan
- Key Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, School of Environmental & Chemical Engineering, Nanchang University, Nanchang 330031, China
| | - Po Keung Wong
- School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong Special Administrative Region
| | - Yonghong Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China.
| | - Bruce Rittmann
- Biodesign Swette Center for Environmental Biotechnology, Arizona State University, AZ 85287-5701, USA
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14
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Liu J, Zhang H, Yan L, Kerr PG, Zhang S, Wu Y. Electron transport, light energy conversion and proteomic responses of periphyton in photosynthesis under exposure to AgNPs. JOURNAL OF HAZARDOUS MATERIALS 2021; 401:123809. [PMID: 33113741 DOI: 10.1016/j.jhazmat.2020.123809] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 08/10/2020] [Accepted: 08/21/2020] [Indexed: 05/09/2023]
Abstract
Silver nanoparticles (AgNPs) including a mix of intact nanoparticle-Ag and 'free' Ag+ pose high risks to benthic photoautotrophs, but the photosynthetic responses of benthic microbial aggregates to AgNPs still remain largely unknown. Here, periphyton and Nostoc were used to elucidate the photosynthetic responses of benthic algae community to intact nanoparticle-Ag and Ag+. During exposure, both intact nanoparticle-Ag and Ag+ imposed negative effects on photosynthesis of benthic algae, but via different pathways. Specifically, Ag+ had stronger effects on damaging the oxygen-evolving complex (OEC) and thylakoid membrane than intact nanoparticle-Ag. Ag+ also suppressed electron transfer from QA to QB, and impaired phycobilisome. Intact nanoparticle-Ag inhibited the expression of PsbD and PsbL in PSII, but prompted the ROS scavenging capacity. In response to the stress of AgNPs, the benthic algae increased light energy absorption to maintain the electron transport efficiency, and up-regulated PSI reaction center protein (PsaA) to compensate the degraded PSII. These results reveal how intact nanoparticle-Ag and Ag+ influence electron transport, energy conversion and protein expression in the photosynthesis of periphyton, and provide deep insights into the responses of benthic photoautotrophs to different components of AgNPs.
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Affiliation(s)
- Junzhuo Liu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing, 210008, China; Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resources of the People's Republic of China, Yichang, 443605, China.
| | - Huijie Zhang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing, 210008, China; College of Agricultural Science, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Liying Yan
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing, 210008, China; Ministry of Education Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, College of Environment, Hohai University, Nanjing, 210098, China
| | - Philip G Kerr
- School of Biomedical Sciences, Charles Sturt University, Boorooma St., Wagga Wagga, NSW, 2678, Australia
| | - Songhe Zhang
- Ministry of Education Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, College of Environment, Hohai University, Nanjing, 210098, China
| | - Yonghong Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing, 210008, China; Zigui Three Gorges Reservoir Ecosystem, Observation and Research Station of Ministry of Water Resources of the People's Republic of China, Yichang, 443605, China.
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15
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Furey PC, Lee SS, Clemans DL. Substratum-associated microbiota. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2020; 92:1629-1648. [PMID: 33463854 DOI: 10.1002/wer.1410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 07/13/2020] [Accepted: 07/14/2020] [Indexed: 06/12/2023]
Abstract
Highlights of new, interesting, and emerging research findings on substratum-associated microbiota covered from a survey of 2019 literature from primarily freshwaters provide insight into research trends of interest to the Water Environment Federation and others interested in benthic, aquatic environments. Coverage of topics on bottom-associated or attached algae and cyanobacteria, though not comprehensive, includes new methods, taxa new-to-science, nutrient dynamics, auto- and heterotrophic interactions, grazers, bioassessment, herbicides and other pollutants, metal contaminants, and nuisance, and bloom-forming and harmful algae. Coverage of bacteria, also not comprehensive, focuses on the ecology of benthic biofilms and microbial communities, along with the ecology of microbes like Caulobacter crescentus, Rhodobacter, and other freshwater microbial species. Bacterial topics covered also include metagenomics and metatranscriptomics, toxins and pollutants, bacterial pathogens and bacteriophages, and bacterial physiology. Readers may use this literature review to learn about or renew their interest in the recent advances and discoveries regarding substratum-associated microbiota. PRACTITIONER POINTS: This review of literature from 2019 on substratum-associated microbiota presents highlights of findings on algae, cyanobacteria, and bacteria from primarily freshwaters. Coverage of algae and cyanobacteria includes findings on new methods, taxa new to science, nutrient dynamics, auto- and heterotrophic interactions, grazers, bioassessment, herbicides and other pollutants, metal contaminants, and nuisance, bloom-forming and harmful algae. Coverage of bacteria includes findings on ecology of benthic biofilms and microbial communities, the ecology of microbes, metagenomics and metatranscriptomics, toxins and pollutants, bacterial pathogens and bacteriophages, and bacterial physiology. Highlights of new, noteworthy and emerging topics build on those from 2018 and will be of relevance to the Water Environment Federation and others interested in benthic, aquatic environments.
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Affiliation(s)
- Paula C Furey
- Department Biology, St. Catherine University, St. Paul, Minnesota, USA
| | - Sylvia S Lee
- Office of Research and Development, U.S. Environmental Protection Agency, Washington, District of Columbia, USA
| | - Daniel L Clemans
- Department of Biology, Eastern Michigan University, Ypsilanti, Michigan, USA
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