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Zhu Y, Ma S, Wen Y, Zhao W, Jiang Y, Li M, Zou K. Deciphering assembly processes, network complexity and stability of potential pathogenic communities in two anthropogenic coastal regions of a highly urbanized estuary. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 358:124444. [PMID: 38936795 DOI: 10.1016/j.envpol.2024.124444] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Revised: 06/01/2024] [Accepted: 06/24/2024] [Indexed: 06/29/2024]
Abstract
The existence of potential pathogens may lead to severe water pollution, disease transmission, and the risk of infectious diseases, posing threats to the stability of aquatic ecosystems and human health. In-depth research on the dynamic of potential pathogenic communities is of significant importance, it can provide crucial support for assessing the health status of aquatic ecosystems, maintaining ecological balance, promoting sustainable economic development, and safeguarding human health. Nevertheless, the current understanding of the distribution and geographic patterns of potential pathogens in coastal ecosystems remains rather limited. Here, we investigated the diversity, assembly, and co-occurrence network of potential pathogenic communities in two anthropogenic coastal regions, i.e., the eight mouths (EPR) and nearshore region (NSE), of the Pearl River Estuary (PRE) and a total of 11 potential pathogenic types were detected. The composition and diversity of potential pathogenic communities exhibited noteworthy distinctions between the EPR and NSE, with 6 shared potential pathogenic families. Additionally, in the NSE, a significant pattern of geographic decay was observed, whereas in the EPR, the pattern of geographic decay was not significant. Based on the Stegen null model, it was noted that undominant processes (53.36%/69.24%) and heterogeneous selection (27.35%/25.19%) dominated the assembly of potential pathogenic communities in EPR and NSE. Co-occurrence network analysis showed higher number of nodes, a lower average path length and graph diameter, as well as higher level of negative co-occurrences and modularity in EPR than those in NSE, indicating more complex and stable correlations between potential pathogens in EPR. These findings lay the groundwork for the effective management of potential pathogens, offering essential information for ecosystem conservation and public health considerations in the anthropogenic coastal regions.
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Affiliation(s)
- Yiyi Zhu
- University Joint Laboratory of Guangdong Province, Hong Kong and Macao Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, 510642, Guangzhou, China
| | - Shanshan Ma
- University Joint Laboratory of Guangdong Province, Hong Kong and Macao Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, 510642, Guangzhou, China
| | - Yongjing Wen
- University Joint Laboratory of Guangdong Province, Hong Kong and Macao Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, 510642, Guangzhou, China
| | - Wencheng Zhao
- University Joint Laboratory of Guangdong Province, Hong Kong and Macao Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, 510642, Guangzhou, China
| | - Yun Jiang
- University Joint Laboratory of Guangdong Province, Hong Kong and Macao Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, 510642, Guangzhou, China
| | - Min Li
- Key Laboratory for Sustainable Utilization of Open-sea Fishery, Ministry of Agriculture and Rural Affairs, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, 510300, China
| | - Keshu Zou
- University Joint Laboratory of Guangdong Province, Hong Kong and Macao Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, 510642, Guangzhou, China.
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Huang Z, Shu L, He Z, Yan Q. Community coalescence under variable hydrochemical conditions of the Chesapeake Bay shaped bacterial diversity and functional traits. ENVIRONMENTAL RESEARCH 2024; 257:119272. [PMID: 38823613 DOI: 10.1016/j.envres.2024.119272] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2024] [Revised: 05/27/2024] [Accepted: 05/28/2024] [Indexed: 06/03/2024]
Abstract
Community coalescence related to bacterial mixing events regulates community characteristics and affects the health of estuary ecosystems. At present, bacterial coalescence and its driving factors are still unclear. The present study used a dataset from the Chesapeake Bay (2017) to address how bacterial community coalescence in response to variable hydrochemistry in estuarine ecosystems. We determined that variable hydrochemistry promoted the deterioration of water quality. Temperature, orthophosphate, dissolved oxygen, chlorophyll a, Secchi disk depth, and dissolved organic phosphorus were the key environmental factors driving community coalescence. Bacteria with high tolerance to environmental change were the primary taxa accumulated in community coalescence, and the significance of deterministic processes to communities was revealed. Community coalescence was significantly correlated with the pathways of metabolism and organismal systems, and promoted the co-occurrence of antibiotic resistance and virulence factor genes. Briefly, community coalescence under variable hydrochemical conditions shaped bacterial diversity and functional traits, to optimise strategies for energy acquisition and lay the foundation for alleviating environmental pressures. However, potential pathogenic bacteria in community coalescence may be harmful to human health and environmental safety. The present study provides a scientific reference for ecological management of estuaries.
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Affiliation(s)
- Zhenyu Huang
- School of Environmental Science and Engineering, Marine Synthetic Ecology Research Center, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangdong Provincial Observation and Research Station for Marine Ranching in Lingdingyang Bay, China-ASEAN Belt and Road Joint Laboratory on Mariculture Technology, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, 510006, China
| | - Longfei Shu
- School of Environmental Science and Engineering, Marine Synthetic Ecology Research Center, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangdong Provincial Observation and Research Station for Marine Ranching in Lingdingyang Bay, China-ASEAN Belt and Road Joint Laboratory on Mariculture Technology, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, 510006, China
| | - Zhili He
- School of Environmental Science and Engineering, Marine Synthetic Ecology Research Center, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangdong Provincial Observation and Research Station for Marine Ranching in Lingdingyang Bay, China-ASEAN Belt and Road Joint Laboratory on Mariculture Technology, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, 510006, China
| | - Qingyun Yan
- School of Environmental Science and Engineering, Marine Synthetic Ecology Research Center, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangdong Provincial Observation and Research Station for Marine Ranching in Lingdingyang Bay, China-ASEAN Belt and Road Joint Laboratory on Mariculture Technology, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, 510006, China.
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Ndayishimiye JC, Nyirabuhoro P, Gao X, Chen H, Wang W, Mazei Y, Yang J. Community responses of testate amoebae (Arcellinida and Euglyphida) to ecological disturbance explained by contrasting assembly mechanisms in two subtropical reservoirs. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 953:176058. [PMID: 39241884 DOI: 10.1016/j.scitotenv.2024.176058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 08/17/2024] [Accepted: 09/03/2024] [Indexed: 09/09/2024]
Abstract
Mechanisms underlying the effects of ecological disturbance on aquatic ecosystems remain uncertain in subtropical regions. Here, we used a proxy-based approach to explore the community dynamics of testate amoebae (Arcellinida and Euglyphida) in two subtropical deep reservoirs (Tingxi and Shidou) in Xiamen, southeastern China, over a three-year period. Specifically, we employed drought and typhoon events recorded by weather station as proxies for ecological disturbance and chlorophyll-a estimated through fluorometry as a proxy for testate amoeba food. We addressed three questions: (1) Does typhoon-induced ecological disturbance affect the distribution patterns of testate amoebae in subtropical reservoirs? (2) Do typhoon- and drought-induced ecological disturbances affect the testate amoeba community across different water layers of subtropical reservoirs similarly? (3) Do stochastic or deterministic processes shaping the testate amoeba community over time exhibit similar patterns in different water layers of subtropical reservoirs? The typhoon-induced ecological disturbance resulted in pronounced shifts in the distribution patterns of testate amoebae, characterized by lower shell influx in surface waters (11-12 ind. mL-1 d-1) and higher shell influx in middle and bottom waters (12-22 ind. mL-1 d-1). The impact of typhoon-and drought-induced ecological disturbance was more pronounced in surface waters, and its pure explanation accounted for 29.5-35.5 % community variation in a variation partitioning analysis. The effect of stochastic processes revealed by the neutral model increased with water depths, accounting for 63.3-76.5 % of the community variation in the surface, 77.4-82.6 % in the middle, and 82.8-88.1 % in the bottom water. The effect of deterministic processes shown by the null model decreased with water depth and remained relatively low across all water layers. These results suggest contrasting patterns of assembly mechanisms underlying the testate amoeba community responses to ecological disturbance, with the balance perhaps shaped by water depth and the average water residence time in a reservoir.
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Affiliation(s)
- Jean Claude Ndayishimiye
- Faculty of Biology, Shenzhen MSU-BIT University, Shenzhen 518172, China; Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Pascaline Nyirabuhoro
- Faculty of Biology, Shenzhen MSU-BIT University, Shenzhen 518172, China; Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Xiaofei Gao
- Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; College of Fisheries, Henan Normal University, Xinxiang 453007, China
| | - Huihuang Chen
- Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wenping Wang
- Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; Huaibei Normal University, Huaibei 235000, China
| | - Yuri Mazei
- Faculty of Biology, Shenzhen MSU-BIT University, Shenzhen 518172, China; Lomonosov Moscow State University, Leninskie Gory 1, Moscow 119991, Russia; A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Leninskiy Ave. 33, Moscow 117071, Russia
| | - Jun Yang
- Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.
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Lin X, Tian Z, Luo Q, Li J, Cai Q, Chiu MC, Resh VH. Spatial asymmetry of temporal ecological processes can shift in riverine macroinvertebrates responding to fluctuating climate conditions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 952:175872. [PMID: 39218117 DOI: 10.1016/j.scitotenv.2024.175872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2024] [Revised: 08/21/2024] [Accepted: 08/27/2024] [Indexed: 09/04/2024]
Abstract
Exploring the temporal dynamics of biological communities can offer valuable insights into the underlying mechanisms driving changes in biodiversity in the context of short and long-term effects of climate fluctuations. However, an understanding of how temporal shifts in climatic fluctuations influence the spatial patterns of the temporary ecological processes remains unexplored. This study examined the relative importance of temporary deterministic and stochastic processes (i.e., the influence of environmental filtering compared to stochastic variation within the same community) on community dynamics across watersheds in 15 rivers of the European Iberian Peninsula using 21 years of data. This study was divided into two time periods (i.e., 1997-2006 and 2007-2017). The climatic differences between the periods included decreasing levels and heightened variability of precipitation. Additionally, there were declining minimum temperatures and rising maximum temperatures, accompanied by reduced fluctuations in both minimum and maximum temperatures. Water quality and its variations also occur along an elevation pattern and changed over the time period studied. Spatial patterns of the relative importance of the ecological processes shifted between the two decades. The significance of stochastic processes increased with elevation in the earlier period, although no clear elevation pattern emerged in the later period. At the same time, the importance of deterministic processes decreased with elevation in the earlier period, and there was no clear pattern of elevation in the later period. An understanding of the patterns in community dynamics existing at various elevations over time can lay the groundwork for predicting and mitigating the impacts of short-term climate changes on biodiversity and guide appropriate conservation actions.
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Affiliation(s)
- Xiaowei Lin
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China; College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, China.
| | - Zhen Tian
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China.
| | - Qingyi Luo
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China; College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, China; Department of Transdisciplinary Science and Engineering, Tokyo Institute of Technology, Tokyo 152-8550, Japan.
| | - Jingting Li
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China.
| | - Qinghua Cai
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China.
| | - Ming-Chih Chiu
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China.
| | - Vincent H Resh
- Department of Environmental Science, Policy & Management, University of California Berkeley, CA 94720, USA.
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5
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Li Q, Lei Y, Li T. DNA metabarcoding reveals ecological patterns and driving mechanisms of archaeal, bacterial, and eukaryotic communities in sediments of the Sansha Yongle Blue Hole. Sci Rep 2024; 14:6745. [PMID: 38509179 PMCID: PMC10954614 DOI: 10.1038/s41598-024-57214-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Accepted: 03/15/2024] [Indexed: 03/22/2024] Open
Abstract
The Sansha Yongle Blue Hole (SYBH) is the world's deepest marine blue hole with unique physicochemical characteristics. However, our knowledge of the biodiversity and community structure in SYBH sediments remains limited, as past studies have mostly focused on microbial communities in the water column. Here, we collected sediment samples from the aerobic zone (3.1 to 38.6 m) and the deep anaerobic zone (150 m, 300 m) of the SYBH and extracted DNA to characterize the archaeal, bacterial, and eukaryotic communities inhabiting these sediments. Our results showed that the archaeal and bacterial communities were dominated by Thaumarchaeota and Proteobacteria, respectively. The dominant taxa of eukaryotes in different sites varied greatly, mainly including Phaeophyceae, Annelida, Diatomea and Arthropoda. All three examined domains showed clear vertical distributions and significant differences in community composition between the aerobic and anaerobic zones. Sulfide played a prominent role in structuring the three domains, followed by salinity, nitrous oxide, pH, temperature and dissolved oxygen, all of which were positively correlated with the turnover component, the main contributor to beta diversity. Neutral community model revealed that stochastic processes contributed to more than half of the community variations across the three domains. Co-occurrence network showed an equal number of positive and negative interactions in the archaeal network, while positive interactions accounted for ~ 80% in the bacterial and eukaryotic networks. Our findings reveal the ecological features of prokaryotes and eukaryotes in SYBH sediments and shed new light on community dynamics and survival strategies in the special environment of marine blue holes.
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Affiliation(s)
- Qingxia Li
- Laboratory of Marine Organism Taxonomy and Phylogeny, Qingdao Key Laboratory of Marine Biodiversity and Conservation, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China
- Center for Marine Ranching Engineering Science Research of Liaoning, Dalian Ocean University, Dalian, 116023, China
| | - Yanli Lei
- Laboratory of Marine Organism Taxonomy and Phylogeny, Qingdao Key Laboratory of Marine Biodiversity and Conservation, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China.
- Laboratory for Marine Biology and Biotechnology, Qingdao Marine Science and Technology Center, Qingdao, 266237, China.
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, 519082, China.
- University of Chinese Academy of Sciences, Beijing, 100049, China.
| | - Tiegang Li
- Key Laboratory of Marine Sedimentology and Environmental Geology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, 266061, China.
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6
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Xue Y, Abdullah Al M, Chen H, Xiao P, Zhang H, Jeppesen E, Yang J. Relic DNA obscures DNA-based profiling of multiple microbial taxonomic groups in a river-reservoir ecosystem. Mol Ecol 2023; 32:4940-4952. [PMID: 37452629 DOI: 10.1111/mec.17071] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Revised: 06/08/2023] [Accepted: 07/03/2023] [Indexed: 07/18/2023]
Abstract
Numerous studies have investigated the spatiotemporal variability in water microbial communities, yet the effects of relic DNA on microbial community profiles, especially microeukaryotes, remain far from fully understood. Here, total and active bacterial and microeukaryotic community compositions were characterized using propidium monoazide (PMA) treatment coupled with high-throughput sequencing in a river-reservoir ecosystem. Beta diversity analysis showed a significant difference in community composition between both the PMA untreated and treated bacteria and microeukaryotes; however, the differentiating effect was much stronger for microeukaryotes. Relic DNA only resulted in underestimation of the relative abundances of Bacteroidota and Nitrospirota, while other bacterial taxa exhibited no significant changes. As for microeukaryotes, the relative abundances of some phytoplankton (e.g. Chlorophyta, Dinoflagellata and Ochrophyta) and fungi were greater after relic DNA removal, whereas Cercozoa and Ciliophora showed the opposite trend. Moreover, relic DNA removal weakened the size and complexity of cross-trophic microbial networks and significantly changed the relationships between environmental factors and microeukaryotic community composition. However, there was no significant difference in the rates of temporal community turnover between the PMA untreated and treated samples for either bacteria or microeukaryotes. Overall, our results imply that the presence of relic DNA in waters can give misleading information of the active microbial community composition, co-occurrence networks and their relationships with environmental conditions. More studies of the abundance, decay rate and functioning of nonviable DNA in freshwater ecosystems are highly recommended in the future.
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Affiliation(s)
- Yuanyuan Xue
- Aquatic Eco-Health Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
| | - Mamun Abdullah Al
- Aquatic Eco-Health Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
| | - Huihuang Chen
- Aquatic Eco-Health Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Peng Xiao
- Aquatic Eco-Health Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
| | - Hongteng Zhang
- Aquatic Eco-Health Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
| | - Erik Jeppesen
- Department of Ecoscience, Aarhus University, Aarhus, Denmark
- Sino-Danish Centre for Education and Research, Beijing, China
- Limnology Laboratory, Department of Biological Sciences and Centre for Ecosystem Research and Implementation, Middle East Technical University, Ankara, Turkey
- Institute of Marine Sciences, Middle East Technical University, Mersin, Turkey
| | - Jun Yang
- Aquatic Eco-Health Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
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Zhang Z, Wu C, Di Y, Zhang J, Chai B, Zhou S. Identification and relative contributions of environmental driving factors for abundant and rare bacterial taxa to thermal stratification evolution. ENVIRONMENTAL RESEARCH 2023; 232:116424. [PMID: 37327840 DOI: 10.1016/j.envres.2023.116424] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 05/28/2023] [Accepted: 06/13/2023] [Indexed: 06/18/2023]
Abstract
The thermal stratification of reservoir affects water quality, and water quality evolution is largely driven by microorganisms. However, few studies have been conducted on the response of abundant taxa (AT) and rare taxa (RT) to thermal stratification evolution in reservoirs. Here, using high-throughput absolute quantitative techniques, we examined the classification, phylogenetic diversity patterns, and assembly mechanisms of different subcommunities during different periods and investigated the key environmental factors driving community construction and composition. The results showed that community and phylogenic distances of RT were higher than AT (P < 0.001), and community and phylogenic distances of the different subcommunities were significantly positively correlated with the dissimilarity of environmental factors (P < 0.001). Nitrate (NO3--N) was the main driving factor of AT and RT in the water stratification period, and Mn was the main driving factor in the water mixing period (MP) based on redundancy analysis (RDA) and random forest analysis (RF). The interpretation rate of key environmental factors based on the selected indicator species in RT by RF was higher than that of AT, and Xylophilus (10.5%) and Prosthecobacter (0.1%) had the highest average absolute abundance in AT and RT during the water stable stratification period (SSP), whereas Unassigned had the highest abundance during the MP and weak stratification period (WSP). The network of RT and environmental factors was more stable than that of AT, and stratification made the network more complex. NO3--N was the main node of the network during the SSP, and manganese (Mn) was the main node during the MP. Dispersal limitation dominated community aggregation, the proportion of AT was higher than that of RT. Structural Equation Model (SEM) showed that NO3--N and temperature (T) had the highest direct and total effects on β-diversity of AT and RT for the SP and MP, respectively.
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Affiliation(s)
- Ziwei Zhang
- Pollution Prevention Biotechnology Laboratory of Hebei Province, School of Environmental Science and Engineering, Hebei University of Science and Technology, Shijiazhuang, 050018, PR China
| | - Chenbin Wu
- Pollution Prevention Biotechnology Laboratory of Hebei Province, School of Environmental Science and Engineering, Hebei University of Science and Technology, Shijiazhuang, 050018, PR China
| | - Yiling Di
- Pollution Prevention Biotechnology Laboratory of Hebei Province, School of Environmental Science and Engineering, Hebei University of Science and Technology, Shijiazhuang, 050018, PR China
| | - Jiafeng Zhang
- Pollution Prevention Biotechnology Laboratory of Hebei Province, School of Environmental Science and Engineering, Hebei University of Science and Technology, Shijiazhuang, 050018, PR China
| | - Beibei Chai
- Hebei Collaborative Innovation Center for the Regulation and Comprehensive Management of Water Resources and Water Environment, Hebei University of Engineering, Handan, 056038, PR China
| | - Shilei Zhou
- Pollution Prevention Biotechnology Laboratory of Hebei Province, School of Environmental Science and Engineering, Hebei University of Science and Technology, Shijiazhuang, 050018, PR China.
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8
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Abdullah Al M, Wang W, Jin L, Chen H, Xue Y, Jeppesen E, Majaneva M, Xu H, Yang J. Planktonic ciliate community driven by environmental variables and cyanobacterial blooms: A 9-year study in two subtropical reservoirs. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 858:159866. [PMID: 36328255 DOI: 10.1016/j.scitotenv.2022.159866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Revised: 10/06/2022] [Accepted: 10/27/2022] [Indexed: 06/16/2023]
Abstract
It is well-established that environmental variability and cyanobacterial blooms have major effects on the assembly and functioning of bacterial communities in both marine and freshwater habitats. It remains unclear, however, how the ciliate community responds to such changes over the long-term, particularly in subtropical lake and reservoir ecosystems. We analysed 9-year planktonic ciliate data series from the surface water of two subtropical reservoirs to elucidate the role of cyanobacterial bloom and environmental variabilities on the ciliate temporal dynamics. We identified five distinct periods of cyanobacterial succession in both reservoirs. Using multiple time-scale analyses, we found that the interannual variability of ciliate communities was more strongly related to cyanobacterial blooms than to other environmental variables or to seasonality. Moreover, the percentage of species turnover across cyanobacterial bloom and non-bloom periods increased significantly with time over the 9-year period. Phylogenetic analyses further indicated that 84 %-86 % of ciliate community turnover was governed by stochastic dispersal limitation or undominated processes, suggesting that the ciliate communities in subtropical reservoirs were mainly controlled by neutral processes. However, short-term blooms increased the selection pressure and drove 30 %-53 % of the ciliate community turnover. We found that the ciliate community composition was influenced by environmental conditions with nutrients, cyanobacterial biomass and microzooplankton having direct and/or indirect significant effects on the ciliate taxonomic or functional community dynamics. Our results provide new insights into the long-term temporal dynamics of planktonic ciliate communities under cyanobacterial bloom disturbance.
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Affiliation(s)
- Mamun Abdullah Al
- Aquatic Eco-Health Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wenping Wang
- Aquatic Eco-Health Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; College of Life Sciences, Huaibei Normal University, Huaibei 235000, China
| | - Lei Jin
- Aquatic Eco-Health Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Huihuang Chen
- Aquatic Eco-Health Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yuanyuan Xue
- Aquatic Eco-Health Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Erik Jeppesen
- Department of Ecoscience, Aarhus University, Silkeborg 8600, Denmark; Sino-Danish Centre for Education and Research, Beijing 100049, China; Limnology Laboratory, Department of Biological Sciences and Centre for Ecosystem Research and Implementation, Middle East Technical University, Ankara 06800, Turkey; Institute of Marine Sciences, Middle East Technical University, Erdemli-Mersin 33731, Turkey
| | - Markus Majaneva
- Norwegian Institute for Nature Research (NINA), Trondheim, Norway
| | - Henglong Xu
- Laboratory of Microbial Ecology, Ocean University of China, Qingdao 266003, China
| | - Jun Yang
- Aquatic Eco-Health Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.
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Stochastic and deterministic processes shaping the testate amoeba communities across different biotopes of urban parks in Moscow and Xiamen cities. Urban Ecosyst 2022. [DOI: 10.1007/s11252-022-01306-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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10
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Zhu M, Yin H, Yuan Y, Liu H, Qi X, Ren Y, Dang Z. Discrepancy strategies of sediment abundant and rare microbial communities in response to floating microplastic disturbances: Study using a microcosmic experiment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 835:155346. [PMID: 35489492 DOI: 10.1016/j.scitotenv.2022.155346] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 04/11/2022] [Accepted: 04/13/2022] [Indexed: 06/14/2023]
Abstract
Floating microplastics (FMPs) in surface water have been extensively studied, but their influence on sedimentary microbial ecosystems is poorly understood. Here, we investigated response patterns of abundant and rare sedimentary microbes to FMP disturbances by performing microcosmic experiments using fluvial sediment with polyethylene (PE), polylactic acid (PLA), polystyrene (PS) and polyvinyl chloride (PVC) MPs. The results indicated that FMPs altered sediment microbial community diversity and composition. Some organic-degrading, nitrifying and denitrifying bacteria significantly decreased in response to FMP disturbances, which may affect the sediment carbon and nitrogen cycles. Rare taxa persisted under FMP disturbances, whereas abundant taxa were more susceptible to FMP disturbances, suggesting a higher sensitivity of abundant taxa to FMP disturbances. Although stochastic processes governed the assembly of the overall microbial communities, the assembly mechanisms of abundant and rare populations have significantly different responses to FMP interference. The relative contribution of deterministic processes was reinforced by enhanced homogenous selection in abundant populations, while it markedly decreased in rare populations under FMP disturbances. Furthermore, FMPs substantially decreased the network complexity, loosened the coexistence relationships, and increased the negative correlations. Rare species play an important role in reshaping complex microbial interactions and coexistence networks in response to FMP disturbances. This research broadens our perspectives for comprehensively evaluating the ecological effects of FMPs in the aquatic environment to formulate further policy controls.
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Affiliation(s)
- Minghan Zhu
- School of Environment and Energy, South China University of Technology, Guangzhou 510006, China
| | - Hua Yin
- School of Environment and Energy, South China University of Technology, Guangzhou 510006, China; Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Solid Wastes Pollution Control and Recycling, Guangzhou 510006, China.
| | - Yibo Yuan
- School of Environment and Energy, South China University of Technology, Guangzhou 510006, China
| | - Hang Liu
- School of Environment and Energy, South China University of Technology, Guangzhou 510006, China
| | - Xin Qi
- School of Environment and Energy, South China University of Technology, Guangzhou 510006, China
| | - Yuan Ren
- School of Environment and Energy, South China University of Technology, Guangzhou 510006, China; Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Solid Wastes Pollution Control and Recycling, Guangzhou 510006, China
| | - Zhi Dang
- School of Environment and Energy, South China University of Technology, Guangzhou 510006, China; Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Solid Wastes Pollution Control and Recycling, Guangzhou 510006, China
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11
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Dang C, Wang J, He Y, Yang S, Chen Y, Liu T, Fu J, Chen Q, Ni J. Rare biosphere regulates the planktonic and sedimentary bacteria by disparate ecological processes in a large source water reservoir. WATER RESEARCH 2022; 216:118296. [PMID: 35325821 DOI: 10.1016/j.watres.2022.118296] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2021] [Revised: 03/10/2022] [Accepted: 03/13/2022] [Indexed: 06/14/2023]
Abstract
The bacteria in the water column and surface sediments are inherently intertwined and inseparable in aquatic ecosystems, yet little is known about the integrated spatiotemporal dynamics and driving mechanisms of both planktonic and sedimentary bacterial communities in reservoirs. By investigating the planktonic and sedimentary bacteria during four seasons from 88 samples of 11 representative sites across the Danjiangkou reservoir, we depicted an integrated biogeographic pattern of bacterial communities in the water source of the world's largest water diversion project. Our study revealed both planktonic (mantel r = 0.502, P = 0.001) and sedimentary (mantel r = 0.131, P = 0.009) bacterial communities were significantly correlated with environmental heterogeneity, but a weak disparity along spatial heterogeneity, and the significant seasonal dynamics of planktonic (mantel r = 0.499, P = 0.001) rather than sedimentary bacteria. Particularly, rare biosphere played a main role in determining the community succession in the reservoir. It not only exhibited a more striking environmental separation than abundant taxa but also was an essential part in mediating spatiotemporal shifts of planktonic bacteria and maintaining the stability of bacterial community. These rare bacteria were respectively mediated by stochastic (62.68%) and selective (79.60%) processes in water and sediments despite abundant taxa being largely determined by stochastic processes (86.88-93.96%). Overall, our study not only fills a gap in understanding the bacterial community dynamics and underlying drivers in source water reservoirs, but also highlights the particular importance of rare bacteria in mediating biogeochemical cycles in world's large reservoir ecosystems.
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Affiliation(s)
- Chenyuan Dang
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan 430074, China; Key Laboratory of Water and Sediment Sciences, Ministry of Education, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Jiawen Wang
- Key Laboratory of Water and Sediment Sciences, Ministry of Education, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China.
| | - Yifan He
- Key Laboratory of Water and Sediment Sciences, Ministry of Education, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China; School of Water Resources and Hydropower Engineering, Xi'an University of Technology, Xi'an 710048, China
| | - Shanqing Yang
- Key Laboratory of Water and Sediment Sciences, Ministry of Education, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Ying Chen
- Key Laboratory of Water and Sediment Sciences, Ministry of Education, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China; School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, P. R. China
| | - Tang Liu
- Key Laboratory of Water and Sediment Sciences, Ministry of Education, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Jie Fu
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Qian Chen
- Key Laboratory of Water and Sediment Sciences, Ministry of Education, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Jinren Ni
- Key Laboratory of Water and Sediment Sciences, Ministry of Education, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
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12
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Huo S, Zhang H, Monchamp ME, Wang R, Weng N, Zhang J, Zhang H, Wu F. Century-Long Homogenization of Algal Communities Is Accelerated by Nutrient Enrichment and Climate Warming in Lakes and Reservoirs of the North Temperate Zone. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:3780-3790. [PMID: 35143177 DOI: 10.1021/acs.est.1c06958] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Anthropogenic pressures can threaten lake and reservoir ecosystems, leading to harmful algal blooms that have become globally widespread. However, patterns of phytoplankton diversity change and community assembly over long-term scales remain unknown. Here, we explore biodiversity patterns in eukaryotic algal (EA) and cyanobacterial (CYA) communities over a century by sequencing DNA preserved in the sediment cores of seven lakes and reservoirs in the North Temperate Zone. Comparisons within lakes revealed temporal algal community homogenization in mesotrophic lakes, eutrophic lakes, and reservoirs over the last century but no systematic losses of α-diversity. Temporal homogenization of EA and CYA communities continued into the modern day probably due to time-lags related to historical legacies, even if lakes go through a eutrophication phase followed by a reoligotrophication phase. Further, algal community assembly in lakes and reservoirs was mediated by both deterministic and stochastic processes, while homogeneous selection played a relatively important role in recent decades due to intensified anthropogenic activities and climate warming. Overall, these results expand our understanding of global change effects on algal community diversity and succession in lakes and reservoirs that exhibit different successional trajectories while also providing a baseline framework to assess their potential responses to future environmental change.
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Affiliation(s)
- Shouliang Huo
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
- College of Water Sciences, Beijing Normal University, Beijing 100012, China
| | - Hanxiao Zhang
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
- College of Water Sciences, Beijing Normal University, Beijing 100012, China
| | - Marie-Eve Monchamp
- Department of Biology, McGill University, 1205 Docteur Penfield, Montreal, Quebec H3A 1B1, Canada
| | - Rong Wang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Nanyan Weng
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Jingtian Zhang
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Hong Zhang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Fengchang Wu
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
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13
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Wang W, Gao X, Ndayishimiye JC, Lara E, Lahr DJG, Qian H, Ren K, Chen H, Yang J. Population and molecular responses to warming in Netzelia tuberspinifera - An endemic and sensitive protist from East Asia. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 806:150897. [PMID: 34653464 DOI: 10.1016/j.scitotenv.2021.150897] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2021] [Revised: 10/05/2021] [Accepted: 10/05/2021] [Indexed: 06/13/2023]
Abstract
With the effects of global warming becoming ever more obvious, biodiversity conservation is facing severe challenges. Currently, a deeper understanding the mechanisms of the effects of warming on sensitive species has become an important topic in aquatic biodiversity and ecological management. Our study first overcame the "challenge" for a sensitive indicator species (Netzelia tuberspinifera, an endemic testate amoeba species in East Asia) of culturing under laboratory conditions, and then explored its molecular response mechanisms to warming using transcriptomic analysis. Our data indicate that temperature mainly drove the geographical and seasonal variation of N. tuberspinifera populations. Transcriptomic results indicate that when the temperature is <25 °C, rising temperature triggers the biosynthesis of ribosomes; while the temperature is >25 °C, it triggers molecular processes related with cell division, test formation and general biomass increase. However, once the temperature exceeds 40 °C, N. tuberspinifera is unable to survive. Following from these results, the distribution of N. tuberspinifera might expand towards higher altitude or latitude regions under global warming. For the first time, our study showed direct evidence for sensitive protozoa species that presents a very narrow adaptation mechanism to local climate. Our work provides fundamental data for regional biodiversity conservation and scientific reference in subtropical and tropical waterbodies.
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Affiliation(s)
- Wenping Wang
- Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiaofei Gao
- Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; College of Fisheries, Henan Normal University, Xinxiang 453007, China
| | - Jean Claude Ndayishimiye
- Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Enrique Lara
- Real Jardın Botanico, CSIC, Plaza de Murillo 2, Madrid 28014, Spain
| | - Daniel J G Lahr
- Department of Zoology, Institute of Biosciences, University of São Paulo, São Paulo 05508-090, Brazil
| | - Haifeng Qian
- College of Environment, Zhejiang University of Technology, Hangzhou 310032, China
| | - Kexin Ren
- Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Huihuang Chen
- Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jun Yang
- Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.
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14
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He J, Zhang N, Muhammad A, Shen X, Sun C, Li Q, Hu Y, Shao Y. From surviving to thriving, the assembly processes of microbial communities in stone biodeterioration: A case study of the West Lake UNESCO World Heritage area in China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 805:150395. [PMID: 34818768 DOI: 10.1016/j.scitotenv.2021.150395] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 09/13/2021] [Accepted: 09/13/2021] [Indexed: 05/11/2023]
Abstract
Serious concerns regarding stone biodeterioration have been raised due to the loss of aesthetic value and hidden dangers in stone cultural heritages and buildings. Stone biodeterioration involves a complex ecological interplay among organisms, however, the ecological mechanisms (deterministic or stochastic processes) that determine the microbial community on stone remain poorly understood. Here, using both amplicon and shotgun metagenomic sequencing approaches, we comprehensively investigated the biodiversity, assembly, and function of communities (including prokaryotes, fungi, microfauna, and plants) on various types of deteriorating limestone across different habitats in Feilaifeng. By generalizing classic ecological models to stone habitats, we further uncovered and quantified the mechanisms underlying microbial community assembly processes and microbial interactions within the biodeteriorated limestone. Community profiling revealed stable ecosystem functional potential despite high taxonomic variation across different biodeterioration types, suggesting non-random community assembly. Increased niche differentiation occurred in prokaryotes and fungi but not in microfauna and plant during biodeterioration. Certain microbial groups such as nitrifying archaea and bacteria showed wider niche breadth and likely contributing to the initiation, succession and expansion of stone biodeterioration. Consistently, prokaryotes were more strongly structured by selection-based deterministic processes, while micro-eukaryotes were more influenced by dispersal and drift-based stochastic processes. Importantly, microbial coexistence maintains network robustness within stone microbiotas, highlighting mutual cooperation among functional microorganisms. These results provide new insights into microbial community assembly mechanisms in stone ecosystems and may aid in the sustainable conservation of stone materials of interest.
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Affiliation(s)
- Jintao He
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, Hangzhou, China
| | - Nan Zhang
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, Hangzhou, China
| | - Abrar Muhammad
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, Hangzhou, China
| | - Xiaoqiang Shen
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, Hangzhou, China
| | - Chao Sun
- Analysis Center of Agrobiology and Environmental Sciences, Zhejiang University, Hangzhou, China
| | - Qiang Li
- Laboratory of Cultural Relics Conservation Materials, Department of Chemistry, Zhejiang University, Hangzhou, China
| | - Yulan Hu
- School of Art and Archaeology, Zhejiang University, Hangzhou, China
| | - Yongqi Shao
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, Hangzhou, China; Key Laboratory for Molecular Animal Nutrition, Ministry of Education, China.
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15
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Zhang L, Yin W, Wang C, Zhang A, Zhang H, Zhang T, Ju F. Untangling Microbiota Diversity and Assembly Patterns in the World's Largest Water Diversion Canal. WATER RESEARCH 2021; 204:117617. [PMID: 34555587 DOI: 10.1016/j.watres.2021.117617] [Citation(s) in RCA: 50] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Revised: 08/24/2021] [Accepted: 08/25/2021] [Indexed: 06/13/2023]
Abstract
Large water diversion projects are important constructions for reallocation of human-essential water resources. Deciphering microbiota dynamics and assembly mechanisms underlying canal water ecosystem services especially during long-distance diversion is a prerequisite for water quality monitoring, biohazard warning and sustainable management. Using a 1432-km canal of the South-to-North Water Diversion Projects as a model system, we answer three central questions: how bacterial and micro-eukaryotic communities spatio-temporally develop, how much ecological stochasticity contributes to microbiota assembly, and which immigrating populations better survive and navigate across the canal. We applied quantitative ribosomal RNA gene sequence analyses to investigate canal water microbial communities sampled over a year, as well as null model- and neutral model-based approaches to disentangle the microbiota assembly processes. Our results showed clear microbiota dynamics in community composition driven by seasonality more than geographic location, and seasonally dependent influence of environmental parameters. Overall, bacterial community was largely shaped by deterministic processes, whereas stochasticity dominated micro-eukaryotic community assembly. We defined a local growth factor (LGF) and demonstrated its innovative use to quantitatively infer microbial proliferation, unraveling taxonomically dependent population response to local environmental selection across canal sections. Using LGF as a quantitative indicator of immigrating capacities, we also found that most micro-eukaryotic populations (82%) from the source water sustained growth in the canal and better acclimated to the hydrodynamical water environment than bacteria (67%). Taxa inferred to largely propagate include Limnohabitans sp. and Cryptophyceae, potentially contributing to water auto-purification. Combined, our work poses first and unique insights into the microbiota assembly patterns and dynamics in the world's largest water diversion canal, providing important ecological knowledge for long-term sustainable water quality maintenance in such a giant engineered system.
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Affiliation(s)
- Lu Zhang
- Key Laboratory of Coastal Environment and Resources of Zhejiang Province, School of Engineering, Westlake University, 18 Shilongshan Road, Hangzhou 310024, Zhejiang Province, China; Institute of Advanced Technology, Westlake Institute for Advanced Study, 18 Shilongshan Road, Hangzhou 310024, Zhejiang Province, China
| | - Wei Yin
- Changjiang Water Resources Protection Institute, 515 Qintai Street, Wuhan 430051, Hubei Province, China
| | - Chao Wang
- Changjiang Water Resources Protection Institute, 515 Qintai Street, Wuhan 430051, Hubei Province, China
| | - Aijing Zhang
- Construction and Administration Bureau of South-to-North Water Diversion Middle Route Project, 1 Yuyuantan South Road, Beijing 100038, China
| | - Hong Zhang
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Beijing 100085, China
| | - Tong Zhang
- Environmental Microbiome Engineering and Biotechnology Laboratory, Department of Civil Engineering, Pokfulam Road, The University of Hong Kong, Hong Kong 999077, China
| | - Feng Ju
- Key Laboratory of Coastal Environment and Resources of Zhejiang Province, School of Engineering, Westlake University, 18 Shilongshan Road, Hangzhou 310024, Zhejiang Province, China; Institute of Advanced Technology, Westlake Institute for Advanced Study, 18 Shilongshan Road, Hangzhou 310024, Zhejiang Province, China.
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16
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Ndayishimiye JC, Lin T, Nyirabuhoro P, Zhang G, Zhang W, Mazei Y, Ganjidoust H, Yang J. Decade-scale change in testate amoebae community primarily driven by anthropogenic disturbance than natural change in a large subtropical reservoir. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 784:147026. [PMID: 33894610 DOI: 10.1016/j.scitotenv.2021.147026] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Revised: 04/05/2021] [Accepted: 04/05/2021] [Indexed: 06/12/2023]
Abstract
Understanding the extent of human activities leading to an influx of chemical pollutants that cause substantial environmental transformations is the focus of much ongoing research. In this study, we present a multi-proxy record based on a sediment core from a large subtropical reservoir (Xinfengjiang Reservoir) in south China with an emphasis on the changes in testate amoebae community, in combination with sedimentological (radioactivity, physicochemistry, nutrient and organochlorine pesticides) and climatological (air temperature and precipitation) data over the last three decades. Twenty-seven testate amoebae species belonging to seven genera (Arcella, Centropyxis, Cyclopyxis, Difflugia, Netzelia, Euglypha and Pseudodifflugia) were observed. Species richness, abundance and biomass of testate amoebae were in ranges of 18-26 species, 616-825 ind. ml-1 and 9.0-19.4 μg C ml-1, respectively. Two development stages of the reservoir, dated to 1978-1993 (stage 1) and 1993-2006 (stage 2), were distinguished based on testate amoebae communities. Stage 1 was characterized by elevated dry bulk density, carbon-to‑nitrogen ratio and p,p'-DDE in the sediment core and an impact of nitrogen and sulfur deficiency on testate amoebae. Stage 2 was marked by a decrease of dry bulk density, elevated concentrations of aluminum, iron and carbon, low carbon-to‑nitrogen ratio and organochlorine pesticides, fluctuations in rainfall on shorter and yearly timescales, and a stronger influence of the organochlorine pesticides on testate amoebae. Testate amoebae community change and the identified two-stage development were consistent with atmospheric deposition of organochlorine pesticides from anthropogenic sources inside and outside the reservoir watershed, nutrient influx and sediment physicochemistry. The testate amoebae community dynamics and a strong community-environment relationship in stage 2 were linked with non-random patterns in the biotic neighborhoods of species (deterministic processes). The results suggest a stronger impact of anthropogenic disturbance than natural environmental change on testate amoebae community variation of Xinfengjiang Reservoir over time.
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Affiliation(s)
- Jean Claude Ndayishimiye
- Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Tian Lin
- State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Pascaline Nyirabuhoro
- Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Gan Zhang
- State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Wenjing Zhang
- College of Ocean and Earth Sciences, Xiamen University, Xiamen 361005, China
| | - Yuri Mazei
- M V. Lomonosov Moscow State University, Leninskie Gory 1, Moscow 119991, Russia; A.N. Severtsov Institute of Ecology and Evolution, Russsian Academy of Sciences, Leninskiy Ave. 33, Moscow 117071, Russia; Faculty of Biology, Shenzhen MSU-BIT University, International University Park Road 1, Dayun New Town, Longgang District, Shenzhen 517182, China
| | - Hossein Ganjidoust
- Environmental Engineering Division, Faculty of Civil and Environmental Engineering, Tarbiat Modares University, P.O.Box 14115-397, Tehran, Iran
| | - Jun Yang
- Aquatic EcoHealth Group, Fujian Key Laboratory of Watershed Ecology, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.
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17
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Lei J, Liu C, Zhang M, Yang J, Wu F, Ren M, Wu Q, Shi X. The daily effect is more important than the diurnal effect when shaping photosynthetic picoeukaryotes (PPEs) communities in Lake Taihu at a small temporal scale. FEMS Microbiol Ecol 2021; 97:6308367. [PMID: 34160594 DOI: 10.1093/femsec/fiab090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2021] [Accepted: 06/21/2021] [Indexed: 11/13/2022] Open
Abstract
As major primary producers in aquatic systems, the diversity and community composition dynamics of photosynthetic picoeukaryotes (PPEs) have been investigated in recent years. Here, we explored the 3-day diurnal succession of the PPE community in a highly eutrophic lake in early spring using a combination of flow cytometric sorting and high-throughput sequencing. Our results showed that the PPEs were the dominant group of autotrophic picophytoplankton, although they had relatively low diversity and were dominated by the Stephanodiscaceae family in early spring in Lake Taihu. Furthermore, PPE abundance was significantly higher at night than during the day, probably due to their high specific rate of carbon uptake during the day and rapid proliferation at night. Several environmental variables had a significant influence on the PPE community composition, and the daily effect was more important than the diurnal effect when shaping the PPE community in Lake Taihu at a temporal scale of 3 days. Furthermore, based on the variation partitioning analysis (VPA), the relative importance of abiotic factors (deterministic processes) to short-term succession was low, explaining only 20.44% of the PPE community variation. We therefore conclude that stochastic processes determined PPE community assembly over a short temporal scale based on a neutral community model (NCM).
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Affiliation(s)
- Jin Lei
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Beijing East Road 73, Nanjing 210008, China
| | - Changqing Liu
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Beijing East Road 73, Nanjing 210008, China.,University of Chinese Academy of Sciences, Yuquan Road 19, Beijing 100049, China
| | - Min Zhang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Beijing East Road 73, Nanjing 210008, China
| | - Jinsheng Yang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Beijing East Road 73, Nanjing 210008, China.,University of Chinese Academy of Sciences, Yuquan Road 19, Beijing 100049, China
| | - Fan Wu
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Beijing East Road 73, Nanjing 210008, China.,University of Chinese Academy of Sciences, Yuquan Road 19, Beijing 100049, China
| | - Mingdong Ren
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Beijing East Road 73, Nanjing 210008, China.,University of Chinese Academy of Sciences, Yuquan Road 19, Beijing 100049, China
| | - Qinglong Wu
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Beijing East Road 73, Nanjing 210008, China
| | - Xiaoli Shi
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Beijing East Road 73, Nanjing 210008, China
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18
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Zou K, Wang R, Xu S, Li Z, Liu L, Li M, Zhou L. Changes in protist communities in drainages across the Pearl River Delta under anthropogenic influence. WATER RESEARCH 2021; 200:117294. [PMID: 34102388 DOI: 10.1016/j.watres.2021.117294] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 05/21/2021] [Accepted: 05/22/2021] [Indexed: 06/12/2023]
Abstract
Drainages in the Pearl River Delta urban agglomeration (PRDUA) host vital aquatic ecosystems and face enormous pressures from human activities in one of the largest urban agglomerations in the world. Despite being crucial components of aquatic ecosystems, the interactions and assembly processes of the protistan community are rarely explored in areas with serious anthropogenic disturbance. To elucidate the mechanisms of these processes, we used environmental DNA sequencing of 18S rDNA to investigate the influence of environmental factors and species interactions on the protistan community and its assembly in drainages of the PRDUA during summer. The protistan community showed a high level of diversity and a marked spatial pattern in this region. Community assembly was driven primarily by stochastic processes based on the Sloan neutral community model, explaining 74.28%, 75.82%, 73.67%, 74.40% and 51.24% of community variations in the BJ (Beijiang), XJ (Xijiang), PRD (Pearl River Delta), PRE (Pearl River Estuary) areas and in total, respectively. Meanwhile, environmental variables including temperature, pH, dissolved oxygen, transparency, nutrients and land use were strongly correlated with the composition and assembly of the protistan community, explaining 40.40% of variation in the protistan community. Furthermore, the bacterial community was simultaneously analysed by the 16S rDNA sequencing. Co-occurrence network analysis revealed that species interactions within bacteria (81.41% positive) or protists (82.80% positive), and those between bacteria and protists (50% positive and 50% negative) impacted the protistan community assembly. In summary, stochastic processes dominated, whereas species interactions and environmental factors also played important roles in shaping the protistan communities in drainages across the PRDUA. This study provides insights into the ecological patterns, assembly processes and species interactions underlying protistan dynamics in urban aquatic ecosystems experiencing serious anthropogenic disturbance.
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Affiliation(s)
- Keshu Zou
- Joint Laboratory of Guangdong Province and Hong Kong Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, 510642 Guangzhou, China
| | - Ruili Wang
- Joint Laboratory of Guangdong Province and Hong Kong Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, 510642 Guangzhou, China
| | - Shannan Xu
- Guangdong Provincial Key Laboratory of Fishery Ecology and Environment, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 510300 Guangzhou, China
| | - Zhuoying Li
- Joint Laboratory of Guangdong Province and Hong Kong Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, 510642 Guangzhou, China
| | - Li Liu
- Joint Laboratory of Guangdong Province and Hong Kong Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, 510642 Guangzhou, China
| | - Min Li
- Guangdong Provincial Key Laboratory of Fishery Ecology and Environment, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 510300 Guangzhou, China.
| | - Lei Zhou
- Joint Laboratory of Guangdong Province and Hong Kong Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, 510642 Guangzhou, China.
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Chen W, Wen D. Archaeal and bacterial communities assembly and co-occurrence networks in subtropical mangrove sediments under Spartina alterniflora invasion. ENVIRONMENTAL MICROBIOME 2021; 16:10. [PMID: 33941277 PMCID: PMC8091715 DOI: 10.1186/s40793-021-00377-y] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2020] [Accepted: 04/02/2021] [Indexed: 05/22/2023]
Abstract
BACKGROUND Mangrove ecosystems are vulnerable due to the exotic Spartina alterniflora (S. alterniflora) invasion in China. However, little is known about mangrove sediment microbial community assembly processes and interactions under S. alterniflora invasion. Here, we investigated the assembly processes and co-occurrence networks of the archaeal and bacterial communities under S. alterniflora invasion along the coastlines of Fujian province, southeast China. RESULTS Assembly of overall archaeal and bacterial communities was driven predominantly by stochastic processes, and the relative role of stochasticity was stronger for bacteria than archaea. Co-occurrence network analyses showed that the network structure of bacteria was more complex than that of the archaea. The keystone taxa often had low relative abundances (conditionally rare taxa), suggesting low abundance taxa may significantly contribute to network stability. Moreover, S. alterniflora invasion increased bacterial and archaeal drift process (part of stochastic processes), and improved archaeal network complexity and stability, but decreased the network complexity and stability of bacteria. This could be attributed to S. alterniflora invasion influenced microbial communities diversity and dispersal ability, as well as soil environmental conditions. CONCLUSIONS This study fills a gap in the community assembly and co-occurrence patterns of both archaea and bacteria in mangrove ecosystem under S. alterniflora invasion. Thereby provides new insights of the plant invasion on mangrove microbial biogeographic distribution and co-occurrence network patterns.
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Affiliation(s)
- Weidong Chen
- College of Environmental Sciences and Engineering, Peking University, Beijing, 100871 China
| | - Donghui Wen
- College of Environmental Sciences and Engineering, Peking University, Beijing, 100871 China
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20
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Wang X, Wang P, Wang C, Chen J, Miao L, Yuan Q, Liu S, Feng T. Do bacterioplankton respond equally to different river regulations? A quantitative study in the single-dammed Yarlung Tsangpo River and the cascade-dammed Lancang River. ENVIRONMENTAL RESEARCH 2020; 191:110194. [PMID: 32919971 DOI: 10.1016/j.envres.2020.110194] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2020] [Revised: 08/22/2020] [Accepted: 09/06/2020] [Indexed: 06/11/2023]
Abstract
River damming has raised controversial concerns as it simultaneously contributes to socioeconomic development but may jeopardize aquatic ecology. Since bacterioplankton catalyze vital biogeochemical reactions and play important roles in aquatic ecosystems, more attention has been paid to their responses in dammed rivers. Here, a comparative study was conducted between single-dammed (the Yarlung Tsangpo River) and cascade-dammed (the Lancang River) rivers in Southwest China to investigate whether bacterioplankton respond equally to different river regulations. Our results showed that the decreased bacterioplankton abundance and the increased α-diversity always co-occurred in reservoirs of the Yarlung Tsangpo River and the Lancang River. However, the impact of damming on bacterioplankton abundance and α-diversity were resilient in the Lancang River, which can be attributed to the repeated alterations of environmental heterogeneity in cascade damming reaches. Meanwhile, a generalized additive model (GAM) was applied to identify the important drivers affecting bacterioplankton variation. The abundance was influenced by trophic conditions, such as dissolved silicon, while α-diversity was closely related to the microbial dispersal process, such as elevation and distance-from source. And it is also noted that the bacterioplankton dispersal process was interrupted in cascade damming reaches. In addition, based on their important drivers, variations in abundance and α-diversity were also predicted by GAM. As revealed by the quantitative mutual validation between the two rivers, abundance and α-diversity in the cascade-dammed river can be predicted by their response to single-dammed river, suggesting that the impact of cascade damming on bacterioplankton can be pre-assessed by referring to the single stage damming effect. Therefore, our study provides the first trial of quantitative evidence that bacterioplankton do not respond equally to different river regulations, and the impact of cascade damming on bacterioplankton can be predicted based on single stage damming effect, which can contribute to the protection of aquatic ecology in the cascade hydropower development.
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Affiliation(s)
- Xun Wang
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China
| | - Peifang Wang
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China.
| | - Chao Wang
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China
| | - Juan Chen
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China
| | - Lingzhan Miao
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China
| | - Qiusheng Yuan
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China
| | - Sheng Liu
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China
| | - Tao Feng
- Fisheries and Oceans Canada, Bedford Institute of Oceanography, Dartmouth, NS, Canada
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