Differential variations of intracellular and extracellular antibiotic resistance genes between treatment units in centralized sewage sludge treatment plants

Effect of biochar on the fate of antibiotic resistant genes and integrons in compost amended agricultural soil

The persistence and transmission of emerging pollutants such as antibiotic resistance genes (ARGs) via mobile genetic elements (MGEs) have caused concern to scientific community. Composting practises are often adapted for the reduction of organic waste or to enhance fertility in agriculture soil but its continuous usage has posed a potential risk of increased abundance of ARGs in soil. Thus, the present study scrutinises the emerging risk of ARGs and MGEs in agriculture soil and its potential mitigation using biochar owing to its proven environmental sustainability and performance. After 30 days incubation, ARG distribution of SulI, SulII, dfrA1, dfrA12, tetA, flor, and ErmA was 50, 37.5, 37.5, 62.5, 42.11, 62.5, and 52.63% in control samples whereas it was 5, 15.78, 21.05, 15.79, 10.53, 21.05, and 31.58%, respectively, for biochar amended samples. Similarly, IntI1 and IntI2 in control and biochar amended samples were 18.75 and 6.25% and 10.53 and 5.26%, respectively. Principal component analysis (PCA) factor suggests that biochar amendment samples showed enhanced value for pH, organic matter, and organic carbon over control samples. Furthermore, Pearson's correlation analysis performed between detected ARGs and MGEs demonstrated the positive and significant correlation at p < 0.05 for both control and biochar amended samples.

Functional traits and health implications of the global household drinking-water microbiome retrieved using an integrative genome-centric approach

The biological safety of drinking water plays a crucial role in public health protection. However, research on the drinking water microbiome remains in its infancy, especially little is known about the potentially pathogenic bacteria in and functional characteristics of the microbiome in household tap water that people are directly exposed to. In this study, we used a genomic-centric approach to construct a genetic catalogue of the drinking water microbiome by analysing 116 metagenomic datasets of household tap water worldwide, spanning nine countries/regions on five continents. We reconstructed 859 high-quality metagenome-assembled genomes (MAGs) spanning 27 bacterial and 2 archaeal phyla, and found that the core MAGs belonging to the phylum Proteobacteria encoded the highest metabolic functional diversity of the 33 key complete metabolic modules. In particular, we found that two core MAGs of Brevibacillus and Methylomona encoded genes for methane metabolism, which may support the growth of heterotrophic organisms observed in the oligotrophic ecosystem. Four MAGs of complete ammonia oxidation (comammox) Nitrospira were identified and functional metabolic analysis suggested these may enable mixotrophic growth and encode genes for reactive oxygen stress defence and arsenite reduction that could aid survival in the environment of oligotrophic drinking water systems. Four MAGs were annotated as potentially pathogenic bacteria (PPB) and thus represented a possible public health concern. They belonged to the genera Acinetobacter (n = 3) and Mycobacterium (n = 1), with a total relative abundance of 1.06 % in all samples. The genomes of PPB A. junii and A. ursingii were discovered to contain antibiotic resistance genes and mobile genetic elements that could contribute to antimicrobial dissemination in drinking water. Further network analysis suggested that symbiotic microbes which support the growth of pathogenic bacteria can be targets for future surveillance and removal.

Polystyrene microplastics accumulation in lab-scale vertical flow constructed wetlands: impacts and fate

Microplastics (MPs) are ubiquitous pollutants that significantly threaten organisms and ecosystems. Constructed wetlands (CWs), a nature-based treatment technology, can effectively remove MPs from wastewater. However, the responses of CWs when exposed to MPs remain unclear. In this study, lab-scale vertical flow constructed wetlands (VFCWs) were installed for receiving polystyrene (PS) MPs at concentrations of 100 μg/L and 1000 μg/L. The results showed that exposure to PS-MPs has no effects on COD and TP removal in VFCWs, but TN removal decreased by 3.69-5.37 %. Further investigation revealed that PS-MPs significantly impacted microbial communities and metabolic functions. The abundances of predominant nitrifiers (Nitrospira and Nitrosomonas) and denitrifiers (Nakamurella, Bradyrhizobium, and Bacillus) in VFCWs were significantly reduced, aligning with the responses of key enzymes. The presence of PS-MPs also decreased nitrogen removal by plant uptake, leading to decreased plant biomass and chlorophyll by 39.32-48.75 % and 5.92-32.19 %, respectively. Notably, > 90 % removal rates were observed for PS-MPs within VFCWs. In addition to PS-MPs interception by VFCWs substrate, the increase of released benzenes indicated that the PS-MPs biodegradation occurred. Such insights are vital for developing sustainable solutions to mitigate MPs' adverse effects on ecosystems.

Response of viable bacteria to antibiotics in aerobic granular sludge: Resistance mechanisms and behaviors, bacterial communities, and driving factors

The assessment of antimicrobial resistance (AMR) risk by DNA-based techniques mainly relies on total bacterial DNA. In this case, AMR risk recognition is restricted to the genotype level, lacking crucial phenotypic information, such as the distribution of antibiotic resistance genes (ARGs) and mobile genetic elements (MGEs) in dead and viable bacteria. This limitation hinders the recognition of AMR behavior. Herein, based on propidium monoazide (PMA) shielding method, this work firstly quantified the intracellular ARGs/MGEs in viable and dead bacteria, and the impact of viable bacteria composition on the formation of intracellular/extracellular polymeric substance-related /cell-free ARGs (i/e/cARGs) and MGEs (i/e/cMGEs) in aerobic granular sludge (AGS). The shielding efficiency of PMA against dead bacteria was optimized to be as high as 97.5% when the MLSS of AGS was 2.0 g/L. Under antibiotic stimulation, 29.0% ∼ 49.0% of iARGs/iMGEs were carried by viable bacteria, and the remaining proportion were carried by dead bacteria. 18 out of the top 20 dominant genera showed a change in abundance by more than 1% after PMA treatment. 29 viable hosts were identified to associate with 52 iARGs, of which 28 and 15 hosts were also linked to 40 eARGs and 26 cARGs. Also, partial least-squares path model and variance partitioning analysis disclosed that viable bacteria and i/e/cMGEs had a positive effect on i/e/cARGs, with both contributing as much as 64.5% to the total ARGs enrichment. These results better visualized the AMR risk carried by viable bacteria and the categories of viable hosts. This work provides a novel insight into analyzing the actual AMR risk and viable hosts, helping to the reduction and control of AMR in wastewater treatment plants.

Conversion of swine manure into biochar for soil amendment: Efficacy and underlying mechanism of dissipating antibiotic resistance genes

Livestock manure amendment, a common fertilization method for agricultural practice, can exacerbate antibiotic resistance gene (ARG) pollution, thus threatening food safety and human health. On the other hand, manure can also be produced as biochar to improve soil quality, which may reduce ARGs inside manure. However, it is unclear how and why shifting manure to biochar for soil amendment reduces ARG pollution. Thus, this study investigated the variations of ARGs and microbial communities in soil amended with swine manure (2 % and 5 %) and its biochar (2 % and 5 %) and then explored how shifting swine manure to biochar reduced ARG contamination. After 28 d incubation, ARG number in soil without amendment, manure-amended soils, and biochar-amended soils were 47, 112-136, and 43-52, respectively. ARG abundance in soil without amendment, manure-amended soils, and biochar-amended soils were 7.66 × 10⁷, 4.32 × 10⁹ - 1.42 × 10¹¹, and 8.44 × 10⁷-9.67 × 10⁷ copies g^-1 dry soil, respectively. Compared to manure-amended soils, its biochar amendments reduced ARG abundance by 2-4 orders of magnitude and ARG number by 70-93 in soil. Besides, manure amendment altered while biochar did not alter bacterial diversity and composition. The changed soil properties and mobile genetic elements (MGEs) could explain the changes in ARGs. Relative to manure amendments, its biochar amendments reduced mobile genetic elements (MGEs), Proteobacteria and Bacteroidetes in soil, which explained the reduced abundance and diversity of ARGs; however, the multidrug-resistance genes harbored in Proteobacteria and Bacteroidetes were still abundant in biochar-amended soil. This study suggests that converting manure to biochar as a soil amendment can help control the spread of manure ARGs.

Extracellular DNA includes an important fraction of high-risk antibiotic resistance genes in treated wastewaters

Wastewater treatment plants are among the main hotspots for the release of antibiotic resistance genes (ARGs) into the environment. ARGs in treated wastewater can be found in the intracellular DNA (iDNA) and in the extracellular DNA (eDNA). In this study, we investigated the fate and the distribution (either in eDNA or in iDNA) of ARGs in the treated wastewaters pre and post-disinfection by shotgun metagenomics. The richness of the intracellular resistome was found to be higher than the extracellular one. However, the latter included different high risk ARGs. About 11% of the recovered metagenome assembled genomes (MAGs) from the extracted DNA was positive for at least one ARG and, among them, several were positive for more ARGs. The high-risk ARG bacA was the most frequently detected gene among the MAGs. The disinfection demonstrated to be an important driver of the composition of the antibiotic resistomes. Our results demonstrated that eDNA represents an important fraction of the overall ARGs, including a number of high-risk ARGs, which reach the environment with treated wastewater effluents. The studied disinfections only marginally affect the whole antibiotic resistome but cause important shifts from intracellular to extracellular DNA, potentially threating human health.

New strategy of drinking water sludge as conditioner to enhance waste activated sludge dewaterability: Collaborative disposal

Drinking water sludge (DWS) and waste activated sludge (WAS) are usually treated separately. With the continuous deepening understanding of the characteristics of two types sludge, the research and application of the collaborative disposal is worth considering. The heated modification DWS (HDWS) rich in inorganic matter and aluminum (Al₂O₃) can be used as a conditioner to enhance WAS dewaterability using its properties with physical skeleton and chemically catalyzed ozone (O₃). The results showed that the minimum values of capillary water time (CST) and specific resistance filtration (SRF) for WAS were 20.9±2.40 s and 1.07±0.19×10¹³ m/kg at pH=4, O₃ dosage=60 mg/g VS and HDWS dosage=700 mg/g VS, corresponding to the reduction of sludge cake water content (Wc) to 60.37±0.97 %. The mechanism of HDWS+O₃ enhanced WAS dewaterability was systematically elucidated through pyridine-infrared analysis and density functional theory (DFT) calculations. The surface of Al₂O₃ in HDWS had more Lewis acidic sites, and the oxygen atoms of O₃ combined with Al atoms to form Al-O bonds and undergo electron transfer, while O₃ molecules dissociated to produce more hydroxyl radicals (·OH). With the oxidation of ·OH, the extra-microcolony/cellular polymers (EMPS/ECPS) structure were destroyed and became looser, promoting the conversion of internal moisture to free moisture. Zeta potential tended to zero, particle size increased, and the surface was more hydrophobic. Correlation analysis revealed that the component content, protein (PN) secondary structure and molecular weight (MW) in ECPS were positively and more strongly correlated with the sludge dewaterability compared to EMPS. The discovery of HDWS+O₃ applied to effectively enhance WAS dewaterability provided an inspiring perspective on the emerging DWS and WAS co-processing disposition.