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Burgoon LD, Kluxen FM, Frericks M. Understanding and overcoming the technical challenges in using in silico predictions in regulatory decisions of complex toxicological endpoints - A pesticide perspective for regulatory toxicologists with a focus on machine learning models. Regul Toxicol Pharmacol 2022; 137:105311. [PMID: 36494002 DOI: 10.1016/j.yrtph.2022.105311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Revised: 11/28/2022] [Accepted: 11/30/2022] [Indexed: 12/12/2022]
Abstract
There are many challenges that must be overcome before in silico toxicity predictions are ripe for regulatory decision-making. Today, mandates in the United States of America and the European Union to avoid animal usage in toxicity testing is driving the need to consider alternative technologies, including Quantitative Structure Activity Relationship (QSAR) models, and read across approaches. However, when adopting new methods, it is critical that both new approach developers as well as regulatory users understand the strengths and challenges with these new approaches. In this paper, we identify potential sources of bias in machine learning methods specific to toxicity predictions, that may impact the overall performance of in silico models. We also discuss ways to mitigate these biases. Based on our experiences, the most prevalent sources of bias include class imbalance (differing numbers of "toxic" vs "nontoxic" compounds), limited numbers of chemicals within a particular chemistry, and biases within the studies that make up the database used for model building, as well as model evaluation biases. While this is already complex for repeated dose toxicity, in reproduction and developmental toxicity a further level of complexity is introduced by the need to evaluate effects on individual animal and litter basis (e.g., a hierarchal structure). We also discuss key considerations developers and regulators need to make when they use machine learning models to predict chemical safety. Our objective is for our paper to serve as a desk reference for model developers and regulators as they evaluate machine learning models and as they make decisions using these models.
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Kiefer K, Bader T, Minas N, Salhi E, Janssen EML, von Gunten U, Hollender J. Chlorothalonil transformation products in drinking water resources: Widespread and challenging to abate. WATER RESEARCH 2020; 183:116066. [PMID: 32652346 DOI: 10.1016/j.watres.2020.116066] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Revised: 05/25/2020] [Accepted: 06/14/2020] [Indexed: 06/11/2023]
Abstract
Chlorothalonil, a fungicide applied for decades worldwide, has recently been banned in the European Union (EU) and Switzerland due to its carcinogenicity and the presence of potentially toxic transformation products (TPs) in groundwater. The spread and concentration range of chlorothalonil TPs in different drinking water resources was examined (73 groundwater and four surface water samples mainly from Switzerland). The chlorothalonil sulfonic acid TPs (R471811, R419492, R417888) occurred more frequently and at higher concentrations (detected in 65-100% of the samples, ≤2200 ngL-1) than the phenolic TPs (SYN507900, SYN548580, R611968; detected in 10-30% of the samples, ≤130 ngL-1). The TP R471811 was found in all samples and even in 52% of the samples above 100 ngL-1, the drinking water standard in Switzerland and other European countries. Therefore, the abatement of chlorothalonil TPs was investigated in laboratory and pilot-scale experiments and along the treatment train of various water works, comprising aquifer recharge, UV disinfection, ozonation, advanced oxidation processes (AOPs), activated carbon treatment, and reverse osmosis. The phenolic TPs can be abated during ozonation (second order rate constant kO3 ∼104 M-1s-1) and by reaction with hydroxyl radicals (OH) in AOPs (kOH ∼109 M-1s-1). In contrast, the sulfonic acid TPs, which occurred in higher concentrations in drinking water resources, react only very slowly with ozone (kO3 <0.04 M-1s-1) and OH (kOH <5.0 × 107 M-1s-1) and therefore persist in ozonation and OH-based AOPs. Activated carbon retained the very polar TP R471811 only up to a specific throughput of 25 m3kg-1 (20% breakthrough), similarly to the X-ray contrast agent diatrizoic acid. Reverse osmosis was capable of removing all chlorothalonil TPs by ≥98%.
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Affiliation(s)
- Karin Kiefer
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, 8600, Dübendorf, Switzerland; Institute of Biogeochemistry and Pollutant Dynamics, ETH Zurich, 8092, Zurich, Switzerland
| | - Tobias Bader
- Laboratory for Operation Control and Research, Zweckverband Landeswasserversorgung, 89129, Langenau, Germany
| | - Nora Minas
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, 8600, Dübendorf, Switzerland
| | - Elisabeth Salhi
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, 8600, Dübendorf, Switzerland
| | - Elisabeth M-L Janssen
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, 8600, Dübendorf, Switzerland
| | - Urs von Gunten
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, 8600, Dübendorf, Switzerland; Institute of Biogeochemistry and Pollutant Dynamics, ETH Zurich, 8092, Zurich, Switzerland; School of Architecture, Civil and Environmental Engineering (ENAC), École Polytechnique Fédérale de Lausanne (EPFL), 1015, Lausanne, Switzerland
| | - Juliane Hollender
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, 8600, Dübendorf, Switzerland; Institute of Biogeochemistry and Pollutant Dynamics, ETH Zurich, 8092, Zurich, Switzerland.
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A new paradigm in threshold of toxicological concern based on chemoinformatics analysis of a highly curated database enriched with antimicrobials. Food Chem Toxicol 2020; 143:111561. [DOI: 10.1016/j.fct.2020.111561] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2020] [Revised: 06/22/2020] [Accepted: 06/24/2020] [Indexed: 02/06/2023]
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Hensen B, Olsson O, Kümmerer K. A strategy for an initial assessment of the ecotoxicological effects of transformation products of pesticides in aquatic systems following a tiered approach. ENVIRONMENT INTERNATIONAL 2020; 137:105533. [PMID: 32113087 DOI: 10.1016/j.envint.2020.105533] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2019] [Revised: 01/03/2020] [Accepted: 01/26/2020] [Indexed: 06/10/2023]
Abstract
In order to conduct a fast and comprehensive toxicity screening of pesticide transformation products (TPs), this study used a tiered approach by a combination of in silico and experimental methods to determine the probability to be of relevance for risk assessment. The six pesticides Boscalid, Penconazole, Diuron, Terbutryn, Octhilinone (OIT), and Mecoprop were used as model compounds. Identification of corresponding environmental known and unknown TPs were done by literature analysis and photolysis experiments in combination. Aquatic solutions of the pesticides were photolysed to generate TPs which can be expected in the aquatic environment. The resulting mixtures were screened for TPs by high resolution LC-MS/MS. The herein developed approach was conducted at three different tiers: Literature review and in silico methods were used to predict exemplary the environmental bacterial toxicity and the genotoxicity of every single TP at tier I. In case of indications to be toxic, experiments at tier II were applied. Hereby, the photolytic mixtures containing parent compound and TPs were used for the consecutive toxicity test. Microtox assay for the parent compounds and the photolytic mixture was conducted to determine the acute and chronic toxicity and the growth inhibition of V. fischeri. Umu-tests were conducted to determine primary DNA damage. At tier III, single substance standards were used to conduct toxicity tests in case of toxic indication by previous tiers and availability of analytical standard. Identification of TPs revealed 45 known environmental TPs that originated from the six pesticides. The number of substances that need to be assessed was therefore more than sevenfold. By the tiered approach, it was possible to assess toxicological effects on environmental bacteria of 94% of the selected TPs. For 20% we found strong evidence to be toxic to environmental bacteria, as they were assessed at least at two tiers. For further 44% of the TPs we found slight evidence, as they could be assessed at one tier. Contrary, this approach turned out to be unsuitable to assess genotoxic effects of TPs neither by in silico tools nor by experiments. The number of substances that could probably pose a risk onto environment was quadrupled in comparison to the consideration of solely the parent compounds. Thus, this study demonstrates that the conducted screening approach allows for easy and fast identification of environmental relevant TPs. However, the study presented was a very first screening. Its applicability domain needs to be assessed further. For this purpose as a very next step the approach suggested here should be verified by applying additional endpoints and including additional parent compounds.
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Affiliation(s)
- Birte Hensen
- Institute of Sustainable and Environmental Chemistry, Leuphana University of Lüneburg, Universitätsallee 1, 21335 Lüneburg, Germany.
| | - Oliver Olsson
- Institute of Sustainable and Environmental Chemistry, Leuphana University of Lüneburg, Universitätsallee 1, 21335 Lüneburg, Germany.
| | - Klaus Kümmerer
- Institute of Sustainable and Environmental Chemistry, Leuphana University of Lüneburg, Universitätsallee 1, 21335 Lüneburg, Germany
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Kienzler A, Bopp S, Halder M, Embry M, Worth A. Application of new statistical distribution approaches for environmental mixture risk assessment: A case study. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 693:133510. [PMID: 31357034 PMCID: PMC6839615 DOI: 10.1016/j.scitotenv.2019.07.316] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Revised: 07/18/2019] [Accepted: 07/19/2019] [Indexed: 06/10/2023]
Abstract
OBJECTIVES There is growing evidence that single substances present below their individual thresholds of effect may still contribute to combined effects. In component-based mixture risk assessment (MRA), the risks can be addressed using information on the mixture components. This is, however, often hampered by limited availability of ecotoxicity data. Here, the possible use of ecotoxicological threshold concentrations of no concern (i.e. 5th percentile of statistical distribution of ecotoxicological values) is investigated to fill data gaps in MRA. METHODS For chemicals without available aquatic toxicity data, ecotoxicological threshold concentrations of no concern have been derived from Predicted No Effect Concentration (PNEC) distributions and from chemical toxicity distributions, using the EnviroTox tool, with and without considering the chemical mode of action. For exposure, chemical monitoring data from European rivers have been used to illustrate four realistic co-exposure scenarios. Based on those monitoring data and available ecotoxicity data or threshold concentrations when no data were available, Risk Quotients for individual chemicals were calculated, to then derive a mixture Risk Quotient (RQmix). RESULTS A risk was identified in two of the four scenarios. Threshold concentrations contribute from 24 to 95% of the whole RQmix; thus they have a large impact on the predicted mixture risk. Therefore they could only be used for data gap filling for a limited number of chemicals in the mixture. The use of mode of action information to derive more specific threshold values could be a helpful refinement in some cases.
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Affiliation(s)
- Aude Kienzler
- European Commission, Joint Research Centre, Via E. Fermi, 2749, 21027 Ispra, VA, Italy.
| | - Stephanie Bopp
- European Commission, Joint Research Centre, Via E. Fermi, 2749, 21027 Ispra, VA, Italy
| | - Marlies Halder
- European Commission, Joint Research Centre, Via E. Fermi, 2749, 21027 Ispra, VA, Italy
| | - Michelle Embry
- Health and Environmental Science Institute, 740 15th Street NW, Suite 600, Washington, DC 20005, USA
| | - Andrew Worth
- European Commission, Joint Research Centre, Via E. Fermi, 2749, 21027 Ispra, VA, Italy
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Baken KA, Sjerps RMA, Schriks M, van Wezel AP. Toxicological risk assessment and prioritization of drinking water relevant contaminants of emerging concern. ENVIRONMENT INTERNATIONAL 2018; 118:293-303. [PMID: 29909348 DOI: 10.1016/j.envint.2018.05.006] [Citation(s) in RCA: 61] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2018] [Revised: 05/01/2018] [Accepted: 05/02/2018] [Indexed: 05/19/2023]
Abstract
Toxicological risk assessment of contaminants of emerging concern (CEC) in (sources of) drinking water is required to identify potential health risks and prioritize chemicals for abatement or monitoring. In such assessments, concentrations of chemicals in drinking water or sources are compared to either (i) health-based (statutory) drinking water guideline values, (ii) provisional guideline values based on recent toxicity data in absence of drinking water guidelines, or (iii) generic drinking water target values in absence of toxicity data. Here, we performed a toxicological risk assessment for 163 CEC that were selected as relevant for drinking water. This relevance was based on their presence in drinking water and/or groundwater and surface water sources in downstream parts of the Rhine and Meuse, in combination with concentration levels and physicochemical properties. Statutory and provisional drinking water guideline values could be derived from publically available toxicological information for 142 of the CEC. Based on measured concentrations it was concluded that the majority of substances do not occur in concentrations which individually pose an appreciable human health risk. A health concern could however not be excluded for vinylchloride, trichloroethene, bromodichloromethane, aniline, phenol, 2-chlorobenzenamine, mevinphos, 1,4-dioxane, and nitrolotriacetic acid. For part of the selected substances, toxicological risk assessment for drinking water could not be performed since either toxicity data (hazard) or drinking water concentrations (exposure) were lacking. In absence of toxicity data, the Threshold of Toxicological Concern (TTC) approach can be applied for screening level risk assessment. The toxicological information on the selected substances was used to evaluate whether drinking water target values based on existing TTC levels are sufficiently protective for drinking water relevant CEC. Generic drinking water target levels of 37 μg/L for Cramer class I substances and 4 μg/L for Cramer class III substances in drinking water were derived based on these CEC. These levels are in line with previously reported generic drinking water target levels based on original TTC values and are shown to be protective for health effects of the majority of contaminants of emerging concern evaluated in the present study. Since the human health impact of many chemicals appearing in the water cycle has been studied insufficiently, generic drinking water target levels are useful for early warning and prioritization of CEC with unknown toxicity in drinking water and its sources for future monitoring.
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Affiliation(s)
- Kirsten A Baken
- KWR Watercycle Research Institute, Groningenhaven 7, 3433 PE Nieuwegein, The Netherlands.
| | - Rosa M A Sjerps
- KWR Watercycle Research Institute, Groningenhaven 7, 3433 PE Nieuwegein, The Netherlands
| | - Merijn Schriks
- KWR Watercycle Research Institute, Groningenhaven 7, 3433 PE Nieuwegein, The Netherlands
| | - Annemarie P van Wezel
- KWR Watercycle Research Institute, Groningenhaven 7, 3433 PE Nieuwegein, The Netherlands; Copernicus Institute of Sustainable Development, Utrecht University, Heidelberglaan 2, 3584 CS Utrecht, The Netherlands
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Rychen G, Aquilina G, Azimonti G, Bampidis V, Bastos MDL, Bories G, Cocconcelli PS, Flachowsky G, Gropp J, Kolar B, Kouba M, López-Alonso M, López Puente S, Mantovani A, Mayo B, Ramos F, Saarela M, Villa RE, Wallace RJ, Wester P, Brantom P, Dusemund B, Van Beelen P, Westendorf J, Gregoretti L, Manini P, Chesson A. Safety and efficacy of sodium saccharin when used as a feed flavour for piglets, pigs for fattening, calves for rearing and calves for fattening. EFSA J 2018; 16:e05208. [PMID: 32625841 PMCID: PMC7009548 DOI: 10.2903/j.efsa.2018.5208] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Sodium saccharin is intended to be used as a sweetener in feed and water for drinking for piglets, pigs for fattening and veal calves. The Panel on Additives and Products or Substances used in Animal Feed (FEEDAP) considers the proposed maximum use level of 150 mg sodium saccharin/kg feed as safe for calves and pigs for fattening. For piglets (sucking and weaned piglets), a lower level of 100 mg sodium saccharin/kg complete feed is considered safe. The corresponding maximum safe concentrations in water for drinking are 30 mg/L for piglets and 50 mg/L for pigs for fattening, respectively. The maximum safe concentrations of sodium saccharin in feed and water for drinking are derived under the premise that only one source, feed or water for drinking, contains the additive. The FEEDAP Panel concludes that no concern for the consumer would result from the use of sodium saccharin in feed and water for drinking at the dose considered safe for the target species. The precautions for handling the product proposed by the applicant are considered to be sufficient to ensure user safety. The FEEDAP Panel concludes that the use of sodium saccharin at the dose considered safe for target species is unlikely to have detrimental effects on the terrestrial and freshwater compartments. The high mobility and relative persistence of saccharin and the high persistency of its degradation product 4‐hydroxysaccharin indicate that groundwater contamination above 0.1 μg/L is likely to occur. Since the function of sodium saccharin in feed for the target species is essentially the same as that in food, the FEEDAP Panel concludes that no demonstration of efficacy is necessary.
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Yang C, Barlow SM, Muldoon Jacobs KL, Vitcheva V, Boobis AR, Felter SP, Arvidson KB, Keller D, Cronin MT, Enoch S, Worth A, Hollnagel HM. Thresholds of Toxicological Concern for cosmetics-related substances: New database, thresholds, and enrichment of chemical space. Food Chem Toxicol 2017; 109:170-193. [DOI: 10.1016/j.fct.2017.08.043] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2017] [Revised: 08/23/2017] [Accepted: 08/28/2017] [Indexed: 10/18/2022]
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Booth ED, Rawlinson PJ, Maria Fagundes P, Leiner KA. Regulatory requirements for genotoxicity assessment of plant protection product active ingredients, impurities, and metabolites. ENVIRONMENTAL AND MOLECULAR MUTAGENESIS 2017; 58:325-344. [PMID: 28329407 DOI: 10.1002/em.22084] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Accepted: 02/28/2017] [Indexed: 06/06/2023]
Abstract
Active ingredients in plant protection products are subject to rigorous safety assessment during their development, including assessment of genotoxicity. Plant protection products are used for agriculture in multiple regions and for the registration of active ingredients it is necessary to satisfy the data requirements of these different regions. There are no overarching global agreements on which genotoxicity studies need to be conducted to satisfy the majority of regulatory authorities. The implementation of new OECD guidelines for the in vitro micronucleus, transgenic rodent somatic and germ cell gene mutation and in vivo comet assays, as well as the revision of a number of other OECD test guidelines has resulted in some changes to data requirements. This review describes the genotoxicity data requirements for chemical active ingredients as well as biologicals, microbials, ground water metabolites, metabolites, and impurities in a number of regions. Similarities and differences are highlighted. Environ. Mol. Mutagen. 58:325-344, 2017. © 2017 Wiley Periodicals, Inc.
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Affiliation(s)
- Ewan D Booth
- Department of Toxicology and Health Sciences, Syngenta Ltd, Jealott's Hill International Research Centre, Bracknell, Berkshire, United Kingdom
| | - Paul J Rawlinson
- Department of Toxicology and Health Sciences, Syngenta Ltd, Jealott's Hill International Research Centre, Bracknell, Berkshire, United Kingdom
| | - Priscila Maria Fagundes
- Department of Product Safety, Syngenta Protecao de Cultivos Ltda, Sao Paulo, SP, 04795-900, Brazil
| | - Kevin A Leiner
- Department of Toxicology and Health Sciences, Syngenta Crop Protection LLC, Research Triangle Park, North Carolina
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Riemenschneider C, Al-Raggad M, Moeder M, Seiwert B, Salameh E, Reemtsma T. Pharmaceuticals, Their Metabolites, and Other Polar Pollutants in Field-Grown Vegetables Irrigated with Treated Municipal Wastewater. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2016; 64:5784-92. [PMID: 27378214 DOI: 10.1021/acs.jafc.6b01696] [Citation(s) in RCA: 92] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
The reuse of treated municipal wastewater for crop irrigation is a necessity in arid and semiarid regions but a potential entrance for emerging contaminants into the food chain. However, little attention has yet been paid to the detection of micropollutants and possible metabolites in vegetables grown under realistic field conditions. In this study, the uptake of 28 micropollutants and carbamazepine metabolites in 10 different field-grown vegetable species (among them carrot, lettuce, potato, and zucchini) from Jordan was studied. A total of 12 micropollutants and six carbamazepine metabolites, four of which have never been analyzed before in plant-uptake studies, could be detected in all of the samples in concentrations ranging from 1.7 to 216 ng per g of dry weight. In edible tissues, the total concentration of micropollutants decreased in the order of leafy (247-533) > root (73-126) > fruit-bearing (5-76 ng per g of dry weight) vegetables. A preliminary health-risk assessment for nine compounds according to the TTC concept shows no risk for seven of the micropollutats; for ciprofloxacin and 10,11-epoxycarbamazepine, however, more-specific toxicity data would be required for a refined risk assessment.
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Affiliation(s)
- Christina Riemenschneider
- Department of Analytical Chemistry, Helmholtz Centre for Environmental Research - UFZ , Permoserstrasse 15, 04318 Leipzig, Germany
| | - Marwan Al-Raggad
- Water, Energy, and Environment Center, University of Jordan , Amman 11942, Jordan
| | - Monika Moeder
- Department of Analytical Chemistry, Helmholtz Centre for Environmental Research - UFZ , Permoserstrasse 15, 04318 Leipzig, Germany
| | - Bettina Seiwert
- Department of Analytical Chemistry, Helmholtz Centre for Environmental Research - UFZ , Permoserstrasse 15, 04318 Leipzig, Germany
| | - Elias Salameh
- Water, Energy, and Environment Center, University of Jordan , Amman 11942, Jordan
| | - Thorsten Reemtsma
- Department of Analytical Chemistry, Helmholtz Centre for Environmental Research - UFZ , Permoserstrasse 15, 04318 Leipzig, Germany
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