1
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Guo Y, Messinger J, Kloo L, Sun L. Reversible Structural Isomerization of Nature's Water Oxidation Catalyst Prior to O-O Bond Formation. J Am Chem Soc 2022; 144:11736-11747. [PMID: 35748306 PMCID: PMC9264352 DOI: 10.1021/jacs.2c03528] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
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Photosynthetic water
oxidation is catalyzed by a manganese–calcium
oxide cluster, which experiences five “S-states” during
a light-driven reaction cycle. The unique “distorted chair”-like
geometry of the Mn4CaO5(6) cluster shows structural
flexibility that has been frequently proposed to involve “open”
and “closed”-cubane forms from the S1 to
S3 states. The isomers are interconvertible in the S1 and S2 states, while in the S3 state,
the open-cubane structure is observed to dominate inThermosynechococcus elongatus (cyanobacteria) samples.
In this work, using density functional theory calculations, we go
beyond the S3+Yz state to the S3nYz• → S4+Yz step, and report for the first time
that the reversible isomerism, which is suppressed in the S3+Yz state, is fully recovered
in the ensuing S3nYz• state due to the proton release
from a manganese-bound water ligand. The altered coordination strength
of the manganese–ligand facilitates formation of the closed-cubane
form, in a dynamic equilibrium with the open-cubane form. This tautomerism
immediately preceding dioxygen formation may constitute the rate limiting
step for O2 formation, and exert a significant influence
on the water oxidation mechanism in photosystem II.
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Affiliation(s)
- Yu Guo
- Center of Artificial Photosynthesis for Solar Fuels and Department of Chemistry, School of Science, Westlake University, Hangzhou 310024, China.,Institute of Natural Sciences, Westlake Institute for Advanced Study, Hangzhou 310024, China
| | - Johannes Messinger
- Department of Chemistry, Umeå University, Linnaeus väg 6 (KBC huset), SE-90187 Umeå, Sweden.,Molecular Biomimetics, Department of Chemistry─Ångström Laboratory, Uppsala University, SE-75120 Uppsala, Sweden
| | - Lars Kloo
- Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-10044 Stockholm, Sweden
| | - Licheng Sun
- Center of Artificial Photosynthesis for Solar Fuels and Department of Chemistry, School of Science, Westlake University, Hangzhou 310024, China.,Institute of Natural Sciences, Westlake Institute for Advanced Study, Hangzhou 310024, China
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2
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Wang M, Zhang Y, Chen C, Zhang C, Jiang J, Weng Y. Structural Reorganization of a Synthetic Mimic of the Oxygen-Evolving Center in Multiple Redox Transitions Revealed by Electrochemical FTIR Spectra. J Phys Chem Lett 2021; 12:9830-9839. [PMID: 34605651 DOI: 10.1021/acs.jpclett.1c02689] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
In photosynthesis, the protein-bound natural oxygen-evolving center (OEC) undergoes multiple oxidation-state transitions in the light-driven water splitting reactions with a stepwise change in the oxidation potential. Because the protein is vulnerable to electrochemical oxidation, the multiple oxidation/reduction-state transitions can hardly be achieved by electrochemical oxidation with a continuous change in the oxidation potential. An OEC mimic that can undergo four redox transitions has been synthesized (Zhang, C., Science, 2015, 348, 690-693). Here we report an electrochemical FTIR spectroscopic study of this synthetic complex at its multiple oxidation states in the low-frequency region for Mn-O bonds. Compared with those of the native OEC induced by pulsed laser flashes, our results also show the existence of two structural isomers in the S2 state, with the closed cubane conformer being more stable than the open cubane conformer, in contrast to that of the native OEC in which the open form is more stable.
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Affiliation(s)
- Mohan Wang
- Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ying Zhang
- Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Changhui Chen
- Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Chunxi Zhang
- Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Junguang Jiang
- State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, China
| | - Yuxiang Weng
- Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Songshan Lake Materials Laboratory, Dongguan, Guangdong 523000, China
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3
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Hemkemeyer M, Schwalb SA, Heinze S, Joergensen RG, Wichern F. Functions of elements in soil microorganisms. Microbiol Res 2021; 252:126832. [PMID: 34508963 DOI: 10.1016/j.micres.2021.126832] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Revised: 07/23/2021] [Accepted: 07/26/2021] [Indexed: 12/15/2022]
Abstract
The soil microbial community fulfils various functions, such as nutrient cycling and carbon (C) sequestration, therefore contributing to maintenance of soil fertility and mitigation of global warming. In this context, a major focus of research has been on C, nitrogen (N) and phosphorus (P) cycling. However, from aquatic and other environments, it is well known that other elements beyond C, N, and P are essential for microbial functioning. Nonetheless, for soil microorganisms this knowledge has not yet been synthesised. To gain a better mechanistic understanding of microbial processes in soil systems, we aimed at summarising the current knowledge on the function of a range of essential or beneficial elements, which may affect the efficiency of microbial processes in soil. This knowledge is discussed in the context of microbial driven nutrient and C cycling. Our findings may support future investigations and data evaluation, where other elements than C, N, and P affect microbial processes.
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Affiliation(s)
- Michael Hemkemeyer
- Department of Soil Science and Plant Nutrition, Institute of Biogenic Resources in Sustainable Food Systems - From Farm to Function, Rhine-Waal University of Applied Sciences, Marie-Curie-Str. 1, 47533 Kleve, Germany.
| | - Sanja A Schwalb
- Department of Soil Science and Plant Nutrition, Institute of Biogenic Resources in Sustainable Food Systems - From Farm to Function, Rhine-Waal University of Applied Sciences, Marie-Curie-Str. 1, 47533 Kleve, Germany
| | - Stefanie Heinze
- Department of Soil Science & Soil Ecology, Ruhr-University Bochum, Universitätsstr. 150, 44801 Bochum, Germany
| | - Rainer Georg Joergensen
- Department of Soil Biology and Plant Nutrition, University of Kassel, Nordbahnhofstr. 1a, 37213 Witzenhausen, Germany
| | - Florian Wichern
- Department of Soil Science and Plant Nutrition, Institute of Biogenic Resources in Sustainable Food Systems - From Farm to Function, Rhine-Waal University of Applied Sciences, Marie-Curie-Str. 1, 47533 Kleve, Germany
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4
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Yamaguchi K, Yamanaka S, Isobe H, Shoji M, Miyagawa K, Kawakami T. Theory of chemical bonds in metalloenzymes XXIII fundamental principles for the photo-induced water oxidation in oxygen evolving complex of photosystem II. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1725168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- K. Yamaguchi
- The Institute for Scientific and Industrial Research, Osaka University, Osaka, Japan
- Graduate School of Science, Osaka University, Toyonaka, Japan
- RIKEN Center for Computational Science, Kobe, Japan
- Institute for Nanoscience Design, Osaka University, Toyonaka, Japan
- Division of Quantum Information and Quantum Biology (QIQB), Osaka University, Toyonaka, Japan
| | - S. Yamanaka
- Graduate School of Science, Osaka University, Toyonaka, Japan
- Division of Quantum Information and Quantum Biology (QIQB), Osaka University, Toyonaka, Japan
| | - H. Isobe
- Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan
| | - M. Shoji
- Center of Computational Sciences, Tsukuba University, Tsukuba, Japan
| | - K. Miyagawa
- The Institute for Scientific and Industrial Research, Osaka University, Osaka, Japan
| | - T. Kawakami
- Graduate School of Science, Osaka University, Toyonaka, Japan
- RIKEN Center for Computational Science, Kobe, Japan
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5
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Corry TA, O'Malley PJ. Electronic-Level View of O-O Bond Formation in Nature's Water Oxidizing Complex. J Phys Chem Lett 2020; 11:4221-4225. [PMID: 32374174 DOI: 10.1021/acs.jpclett.0c00794] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The crucial O-O bond forming step in the water oxidizing complex (WOC) of photosystem II is modeled using density functional theory calculations and compared with structural X-ray free electron laser (XFEL) determinations for the penultimate S3 state. Concerted electron flow between the Mn4O5 and Mn1O6 bonds of the complex and the nascent O-O bond is monitored using intrinsic bond orbital analysis along the reaction path. Concerted transfer to Mn1 and Mn4 of two electrons from the reactant oxos, O5 and O6, resulting in an unoccupied antibonding σ2p* orbital is the key to low barrier O-O bond formation. The potential energy surface for O-O bond formation shows a rather broad energy minimum for the oxo-oxo form ranging from 2.4-2.0 Å which may explain the relatively short O5-O6 bond distance reported in experimental structure studies. Alternatively the short O5-O6 bond distance may reflect a dynamic equilibrium model across the whole O-O potential energy surface.
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Affiliation(s)
- Thomas A Corry
- Department of Chemistry, School of Natural Sciences, The University of Manchester, Manchester M13 9PL, U.K
| | - Patrick J O'Malley
- Department of Chemistry, School of Natural Sciences, The University of Manchester, Manchester M13 9PL, U.K
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6
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Zulfugarov IS, Wu G, Tovuu A, Lee CH. Effect of oxygen on the non-photochemical quenching of vascular plants and potential oxygen deficiency in the stroma of PsbS-knock-out rice. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 286:1-6. [PMID: 31300135 DOI: 10.1016/j.plantsci.2019.05.015] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 04/25/2019] [Accepted: 05/18/2019] [Indexed: 06/10/2023]
Abstract
The excessive and harmful light energy absorbed by the photosystem (PS) II of higher plants is dissipated as heat through a protective mechanism termed non-photochemical quenching (NPQ) of chlorophyll fluorescence. PsbS-knock-out (KO) mutants lack the trans-thylakoid proton gradient (ΔpH)-dependent part of NPQ. To elucidate the molecular mechanism of NPQ, we investigated its dependency on oxygen. The development of NPQ in wild-type (WT) rice under low-oxygen (LO) conditions was reduced to more than 50% of its original value. However, under high-oxygen (HO) conditions, the NPQ of both WT and PsbS-KO mutants recovered. Moreover, WT and PsbS-KO mutant leaves infiltrated with the ΔpH dissipating uncoupler nigericin showed increased NPQ values under HO conditions. The experiments using intact chloroplasts and protoplasts of Arabidopsis thaliana supported that the LO effects observed in rice leaves were not due to carbon dioxide deficiency. There was a noticeable 90% reduction in the half-time of P700 oxidation rate in LO-treated leaves compared with that of WT control leaves, but the HO treatment did not significantly change the half-time of P700 oxidation rate. Overall, the results obtained here indicate that the stroma of the PsbS-KO plants could be potentially under O2 deficiency. Because the functions of PsbS in rice leaves are likely to be similar to those in other higher plants, our findings offer novel insights into the role of oxygen in the development of NPQ.
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Affiliation(s)
- Ismayil S Zulfugarov
- Department of Integrated Biological Science and Department of Molecular Biology, Pusan National University, Busan 46241, Republic of Korea; Institute of Molecular Biology and Biotechnology, Azerbaijan National Academy of Sciences, Matbuat Avenue 2a, Baku AZ 1073, Azerbaijan; Department of Biology, North-Eastern Federal University, 58 Belinsky Str., Yakutsk 677-027, Republic of Sakha (Yakutia), Russian Federation
| | - Guangxi Wu
- Department of Integrated Biological Science and Department of Molecular Biology, Pusan National University, Busan 46241, Republic of Korea
| | - Altanzaya Tovuu
- Department of Integrated Biological Science and Department of Molecular Biology, Pusan National University, Busan 46241, Republic of Korea
| | - Choon-Hwan Lee
- Department of Integrated Biological Science and Department of Molecular Biology, Pusan National University, Busan 46241, Republic of Korea.
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7
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Zhang B, Sun L. Across the Board: Licheng Sun on the Mechanism of O-O Bond Formation in Photosystem II. CHEMSUSCHEM 2019; 12:3401-3404. [PMID: 31240851 DOI: 10.1002/cssc.201901438] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Indexed: 06/09/2023]
Abstract
In this series of articles, the board members of ChemSusChem discuss recent research articles that they consider of exceptional quality and importance for sustainability. This entry features Prof. L. Sun, who proposes a special mechanism for O-O bond formation in photosystem II with involvement of an MnVII -oxo species induced by charge- and structural rearrangements. In this viewpoint, Proton transfer is involved in changes of the first coordination spheres around the MnVII -oxo site on the dangling Mn4 with de- and re-coordination of carboxylates (Glu333 and Asp170).
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Affiliation(s)
- BiaoBiao Zhang
- Department of Chemistry, KTH Royal Institute of Technology, Stockholm, SE-10044, Sweden
| | - Licheng Sun
- Department of Chemistry, KTH Royal Institute of Technology, Stockholm, SE-10044, Sweden
- State Key Laboratory of Fine Chemicals, Institute of Artificial Photosynthesis, DUT-KTH Joint Education and Research Centre on Molecular Devices, Dalian University of Technology, Dalian, 116024, P.R. China
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8
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9
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Yamaguchi K, Shoji M, Isobe H, Miyagawa K, Nakatani K. Theory of chemical bonds in metalloenzymes XXII: a concerted bond-switching mechanism for the oxygen–oxygen bond formation coupled with one electron transfer for water oxidation in the oxygen-evolving complex of photosystem II. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1552799] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- K. Yamaguchi
- Institute for Nanoscience Design, Osaka University, Toyonaka, Osaka, Japan
- The Institute for Scientific and Industrial Research, Osaka University, Osaka, Japan
- Handairigaku Techno-Research, Toyonaka, Osaka, Japan
| | - M. Shoji
- Center of Computational Sciences, Tsukuba University, Tsukuba, Ibaraki, Japan
| | - H. Isobe
- Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan
| | - K. Miyagawa
- The Institute for Scientific and Industrial Research, Osaka University, Osaka, Japan
| | - K. Nakatani
- The Institute for Scientific and Industrial Research, Osaka University, Osaka, Japan
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10
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Shamsipur M, Pashabadi A. Latest advances in PSII features and mechanism of water oxidation. Coord Chem Rev 2018. [DOI: 10.1016/j.ccr.2018.07.006] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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11
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Zhang B, Sun L. Why nature chose the Mn 4CaO 5 cluster as water-splitting catalyst in photosystem II: a new hypothesis for the mechanism of O-O bond formation. Dalton Trans 2018; 47:14381-14387. [PMID: 30129959 DOI: 10.1039/c8dt01931b] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Resolving the questions, namely, the selection of Mn by nature to build the oxygen-evolving complex (OEC) and the presence of a cubic Mn3CaO4 structure in OEC coupled with an additional dangling Mn (Mn4) via μ-O atom are not only important to uncover the secret of water oxidation in nature, but also essential to achieve a blueprint for developing advanced water-oxidation catalysts for artificial photosynthesis. Based on the important experimental results reported so far in the literature and on our own findings, we propose a new hypothesis for the water oxidation mechanism in OEC. In this new hypothesis, we propose for the first time, a complete catalytic cycle involving a charge-rearrangement-induced MnVII-dioxo species on the dangling Mn4 during the S3 → S4 transition. Moreover, the O-O bond is formed within this MnVII-dioxo site, which is totally different from that discussed in other existing proposals.
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Affiliation(s)
- Biaobiao Zhang
- Department of Chemistry, KTH Royal Institute of Technology, 10044 Stockholm, Sweden.
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12
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Pushkar Y, Davis KM, Palenik MC. Model of the Oxygen Evolving Complex Which Is Highly Predisposed to O-O Bond Formation. J Phys Chem Lett 2018; 9:3525-3531. [PMID: 29863871 DOI: 10.1021/acs.jpclett.8b00800] [Citation(s) in RCA: 52] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Light-driven water oxidation is a fundamental reaction in the biosphere. The Mn4Ca cluster of photosystem II cycles through five redox states termed S0-S4, after which oxygen is evolved. Critically, the timing of O-O bond formation within the Kok cycle remains unknown. By combining recent crystallographic, spectroscopic, and DFT results, we demonstrate an atomistic S3 state model with the possibility of a low barrier to O-O bond formation prior to the final oxidation step. Furthermore, the associated one electron oxidized S4 state does not provide more advantages in terms of spin alignment or the energy of O-O bond formation. We propose that a high energy peroxide isoform of the S3 state can preferentially be oxidized by Tyr zox in the course of final electron transfer leading to O2 evolution. Such a mechanism may explain the peculiar kinetic behavior of O2 evolution as well as serve as an evolutionary adaptation to avoid release of the harmful peroxides.
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Affiliation(s)
- Yulia Pushkar
- Department of Physics and Astronomy , Purdue University , West Lafayette , Indiana 47907 , United States
| | - Katherine M Davis
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
| | - Mark C Palenik
- Chemistry Division , Naval Research Laboratory , NRC Research Associate, Code 6189, 4555 Overlook Avenue SW , Washington, DC 20375 , United States
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13
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Kawashima K, Ishikita H. Energetic insights into two electron transfer pathways in light-driven energy-converting enzymes. Chem Sci 2018; 9:4083-4092. [PMID: 29780537 PMCID: PMC5944228 DOI: 10.1039/c8sc00424b] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Accepted: 03/28/2018] [Indexed: 11/21/2022] Open
Abstract
We report Em values of (bacterio-)chlorophylls for one-electron reduction in both electron-transfer branches of PbRC, PSI, and PSII.
We report redox potentials (Em) for one-electron reduction for all chlorophylls in the two electron-transfer branches of water-oxidizing enzyme photosystem II (PSII), photosystem I (PSI), and purple bacterial photosynthetic reaction centers (PbRC). In PSI, Em values for the accessory chlorophylls were similar in both electron-transfer branches. In PbRC, the corresponding Em value was 170 mV less negative in the active L-branch (BL) than in the inactive M-branch (BM), favoring BL˙– formation. This contrasted with the corresponding chlorophylls, ChlD1 and ChlD2, in PSII, where Em(ChlD1) was 120 mV more negative than Em(ChlD2), implying that to rationalize electron transfer in the D1-branch, ChlD1 would need to serve as the primary electron donor. Residues that contributed to Em(ChlD1) < Em(ChlD2) simultaneously played a key role in (i) releasing protons from the substrate water molecules and (ii) contributing to the larger cationic population on the chlorophyll closest to the Mn4CaO5 cluster (PD1), favoring electron transfer from water molecules. These features seem to be the nature of PSII, which needs to possess the proton-exit pathway to use a protonated electron source—water molecules.
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Affiliation(s)
- Keisuke Kawashima
- Department of Applied Chemistry , The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku , Tokyo 113-8654 , Japan .
| | - Hiroshi Ishikita
- Department of Applied Chemistry , The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku , Tokyo 113-8654 , Japan . .,Research Center for Advanced Science and Technology , The University of Tokyo , 4-6-1 Komaba, Meguro-ku , Tokyo 153-8904 , Japan . ; Tel: +81-3-5452-5056
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14
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Yamaguchi K, Shoji M, Isobe H, Yamanaka S, Kawakami T, Yamada S, Katouda M, Nakajima T. Theory of chemical bonds in metalloenzymes XXI. Possible mechanisms of water oxidation in oxygen evolving complex of photosystem II. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1428375] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Kizashi Yamaguchi
- Institute for Nanoscience Design, Osaka University, Osaka, Japan
- Handairigaku Techno-Research, Osaka Univeristy, Osaka, Japan
- Riken Advanced Institute for Computational Science (AICS), Hyogo, Japan
| | - Mitsuo Shoji
- Center for Computational Sciences, University of Tsukuba, Ibaraki, Japan
| | - Hiroshi Isobe
- Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan
| | | | - Takashi Kawakami
- Graduate School of Science, Osaka University, Osaka, Japan
- Riken Advanced Institute for Computational Science (AICS), Hyogo, Japan
| | - Satoru Yamada
- Riken Advanced Institute for Computational Science (AICS), Hyogo, Japan
| | - Michio Katouda
- Riken Advanced Institute for Computational Science (AICS), Hyogo, Japan
| | - Takahito Nakajima
- Riken Advanced Institute for Computational Science (AICS), Hyogo, Japan
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15
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Beal NJ, Corry TA, O’Malley PJ. Comparison between Experimental and Broken Symmetry Density Functional Theory (BS-DFT) Calculated Electron Paramagnetic Resonance (EPR) Parameters of the S2 State of the Oxygen-Evolving Complex of Photosystem II in Its Native (Calcium) and Strontium-Substituted Form. J Phys Chem B 2017; 121:11273-11283. [DOI: 10.1021/acs.jpcb.7b09498] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Nathan J. Beal
- School of Chemistry, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Thomas A. Corry
- School of Chemistry, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Patrick J. O’Malley
- School of Chemistry, The University of Manchester, Manchester M13 9PL, United Kingdom
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16
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Sakashita N, Watanabe HC, Ikeda T, Ishikita H. Structurally conserved channels in cyanobacterial and plant photosystem II. PHOTOSYNTHESIS RESEARCH 2017; 133:75-85. [PMID: 28188547 DOI: 10.1007/s11120-017-0347-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2016] [Accepted: 01/29/2017] [Indexed: 06/06/2023]
Abstract
In the cyanobacterial photosystem II (PSII), the O4-water chain in the D1 and CP43 proteins, a chain of water molecules that are directly H-bonded to O4 of the Mn4Ca cluster, is linked with a channel that connects the protein bulk surface along with a membrane-extrinsic protein subunit, PsbU (O4-PsbU channel). The cyanobacterial PSII structure also shows that the O1 site of the Mn4Ca cluster has a chain of H-bonded water molecules, which is linked with the channel that proceeds toward the bulk surface via PsbU and PsbV (O1-PsbU/V channel). Membrane-extrinsic protein subunits PsbU and PsbV in cyanobacterial PSII are replaced with PsbP and PsbQ in plant PSII. However, these four proteins have no structural similarity. It remains unknown whether the corresponding channels also exist in plant PSII, because water molecules are not identified in the plant PSII cryo-electron microscopy (cryo-EM) structure. Using the cyanobacterial and plant PSII structures, we analyzed the channels that proceed from the Mn4Ca cluster. The cyanobacterial O4-PsbU and O1-PsbU/V channels were structurally conserved as the channel that proceeds along PsbP toward the protein bulk surface in the plant PSII (O4-PsbP and O1-PsbP channels, respectively). Calculated protonation states indicated that in contrast to the original geometry of the plant cryo-EM structure, protonated PsbP-Lys166 may form a salt-bridge with ionized D1-Glu329 and protonated PsbP-Lys173 may form a salt-bridge with ionized PsbQ-Asp28 near the O1-PsbP channel. The existence of these channels might explain the molecular mechanism of how PsbP can interact with the Mn4Ca cluster.
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Affiliation(s)
- Naoki Sakashita
- Department of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8654, Japan
| | - Hiroshi C Watanabe
- Department of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8654, Japan
- Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo, 153-8904, Japan
| | - Takuya Ikeda
- Department of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8654, Japan
| | - Hiroshi Ishikita
- Department of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8654, Japan.
- Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo, 153-8904, Japan.
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17
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Sakashita N, Watanabe HC, Ikeda T, Saito K, Ishikita H. Origins of Water Molecules in the Photosystem II Crystal Structure. Biochemistry 2017; 56:3049-3057. [DOI: 10.1021/acs.biochem.7b00220] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Naoki Sakashita
- Department
of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan
| | - Hiroshi C. Watanabe
- Department
of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan
- Research
Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan
| | - Takuya Ikeda
- Department
of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan
| | - Keisuke Saito
- Department
of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan
- Research
Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan
| | - Hiroshi Ishikita
- Department
of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan
- Research
Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan
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18
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Barber J. A mechanism for water splitting and oxygen production in photosynthesis. NATURE PLANTS 2017; 3:17041. [PMID: 28368386 DOI: 10.1038/nplants.2017.41] [Citation(s) in RCA: 69] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2016] [Accepted: 03/03/2017] [Indexed: 05/26/2023]
Abstract
Sunlight is absorbed and converted to chemical energy by photosynthetic organisms. At the heart of this process is the most fundamental reaction on Earth, the light-driven splitting of water into its elemental constituents. In this way molecular oxygen is released, maintaining an aerobic atmosphere and creating the ozone layer. The hydrogen that is released is used to convert carbon dioxide into the organic molecules that constitute life and were the origin of fossil fuels. Oxidation of these organic molecules, either by respiration or combustion, leads to the recombination of the stored hydrogen with oxygen, releasing energy and reforming water. This water splitting is achieved by the enzyme photosystem II (PSII). Its appearance at least 3 billion years ago, and linkage through an electron transfer chain to photosystem I, directly led to the emergence of eukaryotic and multicellular organisms. Before this, biological organisms had been dependent on hydrogen/electron donors, such as H2S, NH3, organic acids and Fe2+, that were in limited supply compared with the oceans of liquid water. However, it is likely that water was also used as a hydrogen source before the emergence of PSII, as found today in anaerobic prokaryotic organisms that use carbon monoxide as an energy source to split water. The enzyme that catalyses this reaction is carbon monoxide dehydrogenase (CODH). Similarities between PSII and the iron- and nickel-containing form of this enzyme (Fe-Ni CODH) suggest a possible mechanism for the photosynthetic O-O bond formation.
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Affiliation(s)
- James Barber
- Department of Life Sciences, Imperial College London, Sir Ernst Chain Building, South Kensington Campus, London SW7 2AZ, UK
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19
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Najafpour MM, Moghaddam NJ, Hosseini SM, Madadkhani S, Hołyńska M, Mehrabani S, Bagheri R, Song Z. Nanolayered manganese oxides: insights from inorganic electrochemistry. Catal Sci Technol 2017. [DOI: 10.1039/c7cy00215g] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The electrochemistry of nanolayered Mn oxides in the presence of LiClO4 at pH = 6.3 under different conditions was studied.
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Affiliation(s)
- Mohammad Mahdi Najafpour
- Department of Chemistry
- Institute for Advanced Studies in Basic Sciences (IASBS)
- Zanjan
- Iran
- Center of Climate Change and Global Warming
| | - Navid Jameei Moghaddam
- Department of Chemistry
- Institute for Advanced Studies in Basic Sciences (IASBS)
- Zanjan
- Iran
| | | | - Sepideh Madadkhani
- Department of Chemistry
- Institute for Advanced Studies in Basic Sciences (IASBS)
- Zanjan
- Iran
| | - Małgorzata Hołyńska
- Fachbereich Chemie and Wissenschaftliches Zentrum für Materialwissenschaften (WZMW)
- Philipps-Universität Marburg
- D-35032 Marburg
- Germany
| | - Somayeh Mehrabani
- Department of Chemistry
- Institute for Advanced Studies in Basic Sciences (IASBS)
- Zanjan
- Iran
| | - Robabeh Bagheri
- Surface Protection Research Group
- Surface Department
- Ningbo Institute of Materials Technology and Engineering
- Chinese Academy of Sciences
- Ningbo 315201
| | - Zhenlun Song
- Surface Protection Research Group
- Surface Department
- Ningbo Institute of Materials Technology and Engineering
- Chinese Academy of Sciences
- Ningbo 315201
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Sequential and Coupled Proton and Electron Transfer Events in the S2 → S3 Transition of Photosynthetic Water Oxidation Revealed by Time-Resolved X-ray Absorption Spectroscopy. Biochemistry 2016; 55:6996-7004. [DOI: 10.1021/acs.biochem.6b01078] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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21
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Siggel U, Schmitt FJ, Messinger J. Gernot Renger (1937-2013): his life, Max-Volmer Laboratory, and photosynthesis research. PHOTOSYNTHESIS RESEARCH 2016; 129:109-127. [PMID: 27312337 DOI: 10.1007/s11120-016-0280-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 06/02/2016] [Indexed: 06/06/2023]
Abstract
Gernot Renger (October 23, 1937-January 12, 2013), one of the leading biophysicists in the field of photosynthesis research, studied and worked at the Max-Volmer-Institute (MVI) of the Technische Universität Berlin, Germany, for more than 50 years, and thus witnessed the rise and decline of photosynthesis research at this institute, which at its prime was one of the leading centers in this field. We present a tribute to Gernot Renger's work and life in the context of the history of photosynthesis research of that period, with special focus on the MVI. Gernot will be remembered for his thought-provoking questions and his boundless enthusiasm for science.
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Affiliation(s)
- Ulrich Siggel
- Max-Volmer-Laboratorium, TU Berlin, Strasse des 17. Juni 135, 10623, Berlin, Germany.
| | - Franz-Josef Schmitt
- Max-Volmer-Laboratorium, TU Berlin, Strasse des 17. Juni 135, 10623, Berlin, Germany
| | - Johannes Messinger
- Departmant of Chemistry, Umeå University, Linnaeus väg 6 (KBC huset), 90187, Umeå, Sweden.
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22
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Takaoka T, Sakashita N, Saito K, Ishikita H. pK(a) of a Proton-Conducting Water Chain in Photosystem II. J Phys Chem Lett 2016; 7:1925-32. [PMID: 27128410 DOI: 10.1021/acs.jpclett.6b00656] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Recent high-resolution crystal structures of the water-oxidizing enzyme photosystem II (PSII) show that O4 of the catalytic Mn4CaO5 cluster forms an H-bond with a water molecule W539, which belongs to a chain of water molecules (O4-water chain). Oxidation of Mn4CaO5 to S1 resulted in elongation of the O-H bonds and decrease in pKa(O-H/O(-)) in the [O4-H···OW539-H···OW538-H···OW393] region along the O4-water chain. In S1, removal of all water molecules from the O4-water chain, except W539, resulted in a significant pKa upshift at O4; this suggests that the proton-conducting water chain serves as a conducting media for protons and significantly decreases the donor pKa, leading to a downhill proton transfer. The absence of a corresponding proton-conducting channel is disadvantageous for release of protons from the proton-releasing site, as in the case of O5 that has no H-bond partner.
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Affiliation(s)
- Tomohiro Takaoka
- Department of Applied Chemistry, The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan
| | - Naoki Sakashita
- Department of Applied Chemistry, The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan
| | - Keisuke Saito
- Department of Applied Chemistry, The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan
- Research Center for Advanced Science and Technology, The University of Tokyo , 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan
- Japan Science and Technology Agency (JST), PRESTO, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan
| | - Hiroshi Ishikita
- Department of Applied Chemistry, The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan
- Research Center for Advanced Science and Technology, The University of Tokyo , 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan
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Energetics of proton release on the first oxidation step in the water-oxidizing enzyme. Nat Commun 2015; 6:8488. [PMID: 26442814 PMCID: PMC4617610 DOI: 10.1038/ncomms9488] [Citation(s) in RCA: 98] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2015] [Accepted: 08/26/2015] [Indexed: 12/31/2022] Open
Abstract
In photosystem II (PSII), the Mn4CaO5 cluster catalyses the water splitting reaction. The crystal structure of PSII shows the presence of a hydrogen-bonded water molecule directly linked to O4. Here we show the detailed properties of the H-bonds associated with the Mn4CaO5 cluster using a quantum mechanical/molecular mechanical approach. When O4 is taken as a μ-hydroxo bridge acting as a hydrogen-bond donor to water539 (W539), the S0 redox state best describes the unusually short O4–OW539 distance (2.5 Å) seen in the crystal structure. We find that in S1, O4 easily releases the proton into a chain of eight strongly hydrogen-bonded water molecules. The corresponding hydrogen-bond network is absent for O5 in S1. The present study suggests that the O4-water chain could facilitate the initial deprotonation event in PSII. This unexpected insight is likely to be of real relevance to mechanistic models for water oxidation. The availability of crystal structures of photosystem II opens up the possibility of gaining insights into its mechanism. Here, the authors use a computational approach and propose a deprotonation event at O4 followed by long-range proton-transfer along a chain of strongly bonded water molecules.
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Belyaeva NE, Schmitt FJ, Paschenko VZ, Riznichenko GY, Rubin AB. Modeling of the redox state dynamics in photosystem II of Chlorella pyrenoidosa Chick cells and leaves of spinach and Arabidopsis thaliana from single flash-induced fluorescence quantum yield changes on the 100 ns-10 s time scale. PHOTOSYNTHESIS RESEARCH 2015; 125:123-140. [PMID: 26049407 DOI: 10.1007/s11120-015-0163-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2014] [Accepted: 05/27/2015] [Indexed: 06/04/2023]
Abstract
The time courses of the photosystem II (PSII) redox states were analyzed with a model scheme supposing a fraction of 11-25 % semiquinone (with reduced [Formula: see text]) RCs in the dark. Patterns of single flash-induced transient fluorescence yield (SFITFY) measured for leaves (spinach and Arabidopsis (A.) thaliana) and the thermophilic alga Chlorella (C.) pyrenoidosa Chick (Steffen et al. Biochemistry 44:3123-3132, 2005; Belyaeva et al. Photosynth Res 98:105-119, 2008, Plant Physiol Biochem 77:49-59, 2014) were fitted with the PSII model. The simulations show that at high-light conditions the flash generated triplet carotenoid (3)Car(t) population is the main NPQ regulator decaying in the time interval of 6-8 μs. So the SFITFY increase up to the maximum level [Formula: see text]/F 0 (at ~50 μs) depends mainly on the flash energy. Transient electron redistributions on the RC redox cofactors were displayed to explain the SFITFY measured by weak light pulses during the PSII relaxation by electron transfer (ET) steps and coupled proton transfer on both the donor and the acceptor side of the PSII. The contribution of non-radiative charge recombination was taken into account. Analytical expressions for the laser flash, the (3)Car(t) decay and the work of the water-oxidizing complex (WOC) were used to improve the modeled P680(+) reduction by YZ in the state S 1 of the WOC. All parameter values were compared between spinach, A. thaliana leaves and C. pyrenoidosa alga cells and at different laser flash energies. ET from [Formula: see text] slower in alga as compared to leaf samples was elucidated by the dynamics of [Formula: see text] fractions to fit SFITFY data. Low membrane energization after the 10 ns single turnover flash was modeled: the ∆Ψ(t) amplitude (20 mV) is found to be about 5-fold smaller than under the continuous light induction; the time-independent lumen pHL, stroma pHS are fitted close to dark estimates. Depending on the flash energy used at 1.4, 4, 100 % the pHS in stroma is fitted to 7.3, 7.4, and 7.7, respectively. The biggest ∆pH difference between stroma and lumen was found to be 1.2, thus pH- dependent NPQ was not considered.
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Affiliation(s)
- N E Belyaeva
- Department of Biophysics, Biology Faculty, M.V. Lomonosov Moscow State University, 119992, Moscow, Russia,
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25
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Najafpour MM, Abasi M, Tomo T, Allakhverdiev SI. Nanolayered manganese oxide/C(60) composite: a good water-oxidizing catalyst for artificial photosynthetic systems. Dalton Trans 2015; 43:12058-64. [PMID: 24984108 DOI: 10.1039/c4dt00599f] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
For the first time, we considered Mn oxide/C60 composites as water-oxidizing catalysts. The composites were synthesized by easy and simple procedures, and characterized by some methods. The water-oxidizing activities of these composites were also measured in the presence of cerium(iv) ammonium nitrate. We found that the nanolayered Mn oxide/C60 composites show promising activity toward water oxidation.
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Affiliation(s)
- Mohammad Mahdi Najafpour
- Department of Chemistry, Institute for Advanced Studies in Basic Sciences (IASBS), Zanjan, 45137-66731, Iran.
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26
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Najafpour MM, Fekete M, Sedigh DJ, Aro EM, Carpentier R, Eaton-Rye JJ, Nishihara H, Shen JR, Allakhverdiev SI, Spiccia L. Damage Management in Water-Oxidizing Catalysts: From Photosystem II to Nanosized Metal Oxides. ACS Catal 2015. [DOI: 10.1021/cs5015157] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
| | - Monika Fekete
- School of Chemistry and the ARC Centre of Excellence for Electromaterials Science, Monash University, Victoria 3800, Australia
| | | | - Eva-Mari Aro
- Department of Biochemistry and Food Chemistry, University of Turku, FI-20014 Turku, Finland
| | - Robert Carpentier
- Groupe de Recherche en Biologie Végétale (GRBV), Université du Québec à Trois-Rivières, C.P. 500, Trois-Rivières, Québec G9A 5H7, Canada
| | - Julian J. Eaton-Rye
- Department of Biochemistry, University of Otago, P.O. Box 56, Dunedin 9054, New Zealand
| | - Hiroshi Nishihara
- Department of Chemistry, School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Jian-Ren Shen
- Photosynthesis Research Center, Graduate School of Natural Science and Technology/Faculty of Science, Okayama University, Okayama 700-8530, Japan
| | - Suleyman I. Allakhverdiev
- Controlled Photobiosynthesis Laboratory, Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow 127276, Russia
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia
- Department of Plant Physiology, Faculty of Biology, M. V. Lomonosov Moscow State University, Leninskie Gory 1-12, Moscow 119991, Russia
| | - Leone Spiccia
- School of Chemistry and the ARC Centre of Excellence for Electromaterials Science, Monash University, Victoria 3800, Australia
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27
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Najafpour MM, Amini E. Nano-sized Mn oxides on halloysite or high surface area montmorillonite as efficient catalysts for water oxidation with cerium(iv) ammonium nitrate: support from natural sources. Dalton Trans 2015; 44:15441-9. [DOI: 10.1039/c5dt02336j] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
We used halloysite, a nano-sized natural mineral and high surface area montmorillonite as supports for nano-sized Mn oxides to synthesize efficient water-oxidising catalysts.
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Affiliation(s)
- Mohammad Mahdi Najafpour
- Department of Chemistry
- Institute for Advanced Studies in Basic Sciences (IASBS)
- Zanjan
- Iran
- Center of Climate Change and Global Warming
| | - Emad Amini
- Department of Chemistry
- Institute for Advanced Studies in Basic Sciences (IASBS)
- Zanjan
- Iran
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28
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Mognon L, Benet-Buchholz J, Rahaman SMW, Bo C, Llobet A. Ru–Zn Heteropolynuclear Complexes Containing a Dinucleating Bridging Ligand: Synthesis, Structure, and Isomerism. Inorg Chem 2014; 53:12407-15. [DOI: 10.1021/ic5017559] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Lorenzo Mognon
- Institute of Chemical Research of Catalonia (ICIQ), Avinguda Països Catalans 16, 43007 Tarragona, Spain
| | - Jordi Benet-Buchholz
- Institute of Chemical Research of Catalonia (ICIQ), Avinguda Països Catalans 16, 43007 Tarragona, Spain
| | - S. M. Wahidur Rahaman
- Institute of Chemical Research of Catalonia (ICIQ), Avinguda Països Catalans 16, 43007 Tarragona, Spain
| | - Carles Bo
- Institute of Chemical Research of Catalonia (ICIQ), Avinguda Països Catalans 16, 43007 Tarragona, Spain
- Departament de Quı́mica
Fı́sica i Inorgànica, Universitat Rovira i Virgili, 43007 Tarragona, Spain
| | - Antoni Llobet
- Institute of Chemical Research of Catalonia (ICIQ), Avinguda Països Catalans 16, 43007 Tarragona, Spain
- Departament de Química, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193 Barcelona, Spain
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29
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Influencing factors on heterogeneous water oxidation catalysis by di-μ-oxo dimanganese complex on mica as a synthetic model of photosystem II. RESEARCH ON CHEMICAL INTERMEDIATES 2014. [DOI: 10.1007/s11164-014-1826-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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30
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Belyaeva NE, Schmitt FJ, Paschenko VZ, Riznichenko GY, Rubin AB, Renger G. Model based analysis of transient fluorescence yield induced by actinic laser flashes in spinach leaves and cells of green alga Chlorella pyrenoidosa Chick. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2014; 77:49-59. [PMID: 24556534 DOI: 10.1016/j.plaphy.2014.01.017] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2013] [Accepted: 01/25/2014] [Indexed: 06/03/2023]
Abstract
Measurements of Single Flash Induced Transient Fluorescence Yield (SFITFY) on spinach leaves and whole cells of green thermophilic alga Chlorella pyrenoidosa Chick were analyzed for electron transfer (ET) steps and coupled proton transfer (PT) on both the donor and the acceptor side of the reaction center (RC) of photosystem II (PS II). A specially developed PS II model (Belyaeva et al., 2008, 2011a) allowed the determination of ET steps that occur in a hierarchically ordered time scale from nanoseconds to several seconds. Our study demonstrates that our SFITFY data is consistent with the concept of the reduction of P680(+) by YZ in both leaves and algae (studied on spinach leaves and cells of Chlorella pyrenoidosa Chick). The multiphasic P680(+) reduction kinetics by YZ in PS II core complexes with high oxygen evolution capacity was seen in both algae and leaves. Model simulation to fit SFITFY curves for dark adapted species used here gives the rate constants to verify nanosecond kinetic stages of P680(+) reduction by YZ in the redox state S1 of the water oxidizing complex (WOC) shown in Kühn et al. (2004). Then a sequence of relaxation steps in the redox state S1, outlined by Renger (2012), occurs in both algae and leaves as a similar non-adiabatic ET reactions. Coupled PT is discussed briefly to understand a rearrangement of hydrogen bond protons in the protein matrix of the WOC (Umena et al., 2011). On the other hand, present studies showed a slower reoxidation of reduced QA by QB in algal cells as compared with that in a leaf that might be regarded as a consequence of differences of spatial domains at the QB-site in leaves compared to algae. Our comparative study helped to correlate theory with experimental data for molecular photosynthetic mechanisms in thylakoid membranes.
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Affiliation(s)
- N E Belyaeva
- Department of Biophysics, Biology Faculty, M.V. Lomonosov Moscow State University, 119992 Moscow, Russia.
| | - F-J Schmitt
- Technical University Berlin, Institute of Chemistry, Max-Volmer-Laboratory of Biophysical Chemistry, Straβe des 17. Juni 135, D-10623 Berlin, Germany
| | - V Z Paschenko
- Department of Biophysics, Biology Faculty, M.V. Lomonosov Moscow State University, 119992 Moscow, Russia
| | - G Yu Riznichenko
- Department of Biophysics, Biology Faculty, M.V. Lomonosov Moscow State University, 119992 Moscow, Russia
| | - A B Rubin
- Department of Biophysics, Biology Faculty, M.V. Lomonosov Moscow State University, 119992 Moscow, Russia
| | - G Renger
- Department of Biophysics, Biology Faculty, M.V. Lomonosov Moscow State University, 119992 Moscow, Russia; Technical University Berlin, Institute of Chemistry, Max-Volmer-Laboratory of Biophysical Chemistry, Straβe des 17. Juni 135, D-10623 Berlin, Germany
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Najafpour MM, Heidari S, Amini E, Khatamian M, Carpentier R, Allakhverdiev SI. Nano-sized layered Mn oxides as promising and biomimetic water oxidizing catalysts for water splitting in artificial photosynthetic systems. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2014; 133:124-39. [DOI: 10.1016/j.jphotobiol.2014.03.005] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2014] [Revised: 03/02/2014] [Accepted: 03/07/2014] [Indexed: 01/22/2023]
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32
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Wang H, Lu Y, Mijangos E, Thapper A. Photo-Induced Water Oxidation Based on a Mononuclear Cobalt(II) Complex. CHINESE J CHEM 2014. [DOI: 10.1002/cjoc.201300856] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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33
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Gabdulkhakov AG, Dontsova MV. Structural studies on photosystem II of cyanobacteria. BIOCHEMISTRY (MOSCOW) 2014; 78:1524-38. [DOI: 10.1134/s0006297913130105] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
- A G Gabdulkhakov
- Institute of Protein Research, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia.
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34
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Najafpour MM, Abasi M, Tomo T, Allakhverdiev SI. Mn oxide/nanodiamond composite: a new water-oxidizing catalyst for water oxidation. RSC Adv 2014. [DOI: 10.1039/c4ra06181k] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Herein, we reported nanosized Mn oxide/nanodiamond composites as water-oxidizing compounds.
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Affiliation(s)
- Mohammad Mahdi Najafpour
- Department of Chemistry
- Institute for Advanced Studies in Basic Sciences (IASBS)
- Zanjan, Iran
- Center of Climate Change and Global Warming
- Institute for Advanced Studies in Basic Sciences (IASBS)
| | - Mahnaz Abasi
- Department of Chemistry
- Institute for Advanced Studies in Basic Sciences (IASBS)
- Zanjan, Iran
| | - Tatsuya Tomo
- Department of Biology
- Faculty of Science
- Tokyo University of Science
- Tokyo 162-8601, Japan
- PRESTO
| | - Suleyman I. Allakhverdiev
- Controlled Photobiosynthesis Laboratory
- Institute of Plant Physiology
- Russian Academy of Sciences
- Moscow 127276, Russia
- Institute of Basic Biological Problems
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35
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Najafpour MM, Abbasi Isaloo M, Abasi M, Hołyńska M. Manganese oxide as a water-oxidizing catalyst: from the bulk to Ångström-scale. NEW J CHEM 2014. [DOI: 10.1039/c3nj01393f] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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36
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Yamaguchi K, Yamanaka S, Shoji M, Isobe H, Kitagawa Y, Kawakami T, Yamada S, Okumura M. Theory of chemical bonds in metalloenzymes XIX: labile manganese oxygen bonds of the CaMn4O5cluster in oxygen evolving complex of photosystem II. Mol Phys 2013. [DOI: 10.1080/00268976.2013.842009] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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37
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Abstract
The asymmetric oxidation product [((Ph)L)Fe3(μ-Cl)]2 [(Ph)LH6 = MeC(CH2NHPh-o-NHPh)3], where each trinuclear core is comprised of an oxidized diiron unit [Fe2](5+) and an isolated trigonal pyramidal ferrous site, reacts with MCl2 salts to afford heptanuclear bridged structures of the type ((Ph)L)2Fe6M(μ-Cl)4(thf)2, where M = Fe or Co. Zero-field, (57)Fe Mössbauer analysis revealed the Co resides within the trinuclear core subunits, not at the octahedral, halide-bridged MCl4(thf)2 position indicating Co migration into the trinuclear subunits has occurred. Reaction of [((Ph)L)Fe3(μ-Cl)]2 with CoCl2 (2 or 5 equivalents) followed by precipitation via addition of acetonitrile afforded trinuclear products where one or two irons, respectively, can be substituted within the trinuclear core. Metal atom substitution was verified by (1)H NMR, (57)Fe Mossbauer, single crystal X-ray diffraction, X-ray fluorescence, and magnetometry analysis. Spectroscopic analysis revealed that the Co atom(s) substitute(s) into the oxidized dimetal unit ([M2](5+)), while the M(2+) site remains iron-substituted. Magnetic data acquired for the series are consistent with this analysis revealing the oxidized dimetal unit comprises a strongly coupled S = 1 unit ([FeCo](5+)) or S = 1/2 ([Co2](5+)) that is weakly antiferromagnetically coupled to the high spin (S = 2) ferrous site. The kinetic pathway for metal substitution was probed via reaction of [((Ph)L)Fe3(μ-Cl)]2 with isotopically enriched (57)FeCl2(thf)2, the results of which suggest rapid equilibration of (57)Fe into both the M(2+) site and oxidized diiron site, achieving a 1:1 mixture.
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Affiliation(s)
- Emily V Eames
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138, United States
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Cox N, Messinger J. Reflections on substrate water and dioxygen formation. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2013; 1827:1020-30. [PMID: 23380392 DOI: 10.1016/j.bbabio.2013.01.013] [Citation(s) in RCA: 204] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2012] [Revised: 01/23/2013] [Accepted: 01/25/2013] [Indexed: 11/30/2022]
Abstract
This brief article aims at presenting a concise summary of all experimental findings regarding substrate water-binding to the Mn4CaO5 cluster in photosystem II. Mass spectrometric and spectroscopic results are interpreted in light of recent structural information of the water oxidizing complex obtained by X-ray crystallography, spectroscopy and theoretical modeling. Within this framework current proposals for the mechanism of photosynthetic water-oxidation are evaluated. This article is part of a Special Issue entitled: Metals in Bioenergetics and Biomimetics Systems.
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Affiliation(s)
- Nicholas Cox
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, Mülheim an der Ruhr, Germany
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Najafpour MM, Kompany-Zareh M, Zahraei A, Jafarian Sedigh D, Jaccard H, Khoshkam M, Britt RD, Casey WH. Mechanism, decomposition pathway and new evidence for self-healing of manganese oxides as efficient water oxidizing catalysts: new insights. Dalton Trans 2013; 42:14603-11. [DOI: 10.1039/c3dt51406d] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Najafpour MM, Sedigh DJ, Pashaei B, Nayeri S. Water oxidation by nano-layered manganese oxides in the presence of cerium(iv) ammonium nitrate: important factors and a proposed self-repair mechanism. NEW J CHEM 2013. [DOI: 10.1039/c3nj00372h] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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García-Antón J, Bofill R, Escriche L, Llobet A, Sala X. Transition-Metal Complexes Containing the Dinucleating Tetra-N-Dentate 3,5-Bis(2-pyridyl)pyrazole (Hbpp) Ligand - A Robust Scaffold for Multiple Applications Including the Catalytic Oxidation of Water to Molecular Oxygen. Eur J Inorg Chem 2012. [DOI: 10.1002/ejic.201200661] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Renger G. Mechanism of light induced water splitting in Photosystem II of oxygen evolving photosynthetic organisms. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2012; 1817:1164-76. [PMID: 22353626 DOI: 10.1016/j.bbabio.2012.02.005] [Citation(s) in RCA: 121] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2011] [Revised: 01/27/2012] [Accepted: 02/05/2012] [Indexed: 11/24/2022]
Abstract
The reactions of light induced oxidative water splitting were analyzed within the framework of the empirical rate constant-distance relationship of non-adiabatic electron transfer in biological systems (C. C. Page, C. C. Moser, X. Chen , P. L. Dutton, Nature 402 (1999) 47-52) on the basis of structure information on Photosystem II (PS II) (A. Guskov, A. Gabdulkhakov, M. Broser, C. Glöckner, J. Hellmich, J. Kern, J. Frank, W. Saenger, A. Zouni, Chem. Phys. Chem. 11 (2010) 1160-1171, Y. Umena, K. Kawakami, J-R Shen, N. Kamiya, Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9Å. Nature 47 (2011) 55-60). Comparison of these results with experimental data leads to the following conclusions: 1) The oxidation of tyrosine Y(z) by the cation radical P680(+·) in systems with an intact water oxidizing complex (WOC) is kinetically limited by the non-adiabatic electron transfer step and the extent of this reaction is thermodynamically determined by relaxation processes in the environment including rearrangements of hydrogen bond network(s). In marked contrast, all Y(z)(ox) induced oxidation steps in the WOC up to redox state S(3) are kinetically limited by trigger reactions which are slower by orders of magnitude than the rates calculated for non-adiabatic electron transfer. 3) The overall rate of the triggered reaction sequence of Y(z)(ox) reduction by the WOC in redox state S(3) eventually leading to formation and release of O(2) is kinetically limited by an uphill electron transfer step. Alternative models are discussed for this reaction. The protein matrix of the WOC and bound water molecules provide an optimized dynamic landscape of hydrogen bonded protons for catalyzing oxidative water splitting energetically driven by light induced formation of the cation radical P680(+·). In this way the PS II core acts as a molecular machine formed during a long evolutionary process. This article is part of a Special Issue entitled: Photosynthesis Research for Sustainability: from Natural to Artificial.
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Ames W, Pantazis DA, Krewald V, Cox N, Messinger J, Lubitz W, Neese F. Theoretical evaluation of structural models of the S2 state in the oxygen evolving complex of Photosystem II: protonation states and magnetic interactions. J Am Chem Soc 2011; 133:19743-57. [PMID: 22092013 DOI: 10.1021/ja2041805] [Citation(s) in RCA: 232] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Protonation states of water ligands and oxo bridges are intimately involved in tuning the electronic structures and oxidation potentials of the oxygen evolving complex (OEC) in Photosystem II, steering the mechanistic pathway, which involves at least five redox state intermediates S(n) (n = 0-4) resulting in the oxidation of water to molecular oxygen. Although protons are practically invisible in protein crystallography, their effects on the electronic structure and magnetic properties of metal active sites can be probed using spectroscopy. With the twin purpose of aiding the interpretation of the complex electron paramagnetic resonance (EPR) spectroscopic data of the OEC and of improving the view of the cluster at the atomic level, a complete set of protonation configurations for the S(2) state of the OEC were investigated, and their distinctive effects on magnetic properties of the cluster were evaluated. The most recent X-ray structure of Photosystem II at 1.9 Å resolution was used and refined to obtain the optimum structure for the Mn(4)O(5)Ca core within the protein pocket. Employing this model, a set of 26 structures was constructed that tested various protonation scenarios of the water ligands and oxo bridges. Our results suggest that one of the two water molecules that are proposed to coordinate the outer Mn ion (Mn(A)) of the cluster is deprotonated in the S(2) state, as this leads to optimal experimental agreement, reproducing the correct ground state spin multiplicity (S = 1/2), spin expectation values, and EXAFS-derived metal-metal distances. Deprotonation of Ca(2+)-bound water molecules is strongly disfavored in the S(2) state, but dissociation of one of the two water ligands appears to be facile. The computed isotropic hyperfine couplings presented here allow distinctions between models to be made and call into question the assumption that the largest coupling is always attributable to Mn(III). The present results impose limits for the total charge and the proton configuration of the OEC in the S(2) state, with implications for the cascade of events in the Kok cycle and for the water splitting mechanism.
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Affiliation(s)
- William Ames
- Max-Planck-Institut für Bioanorganische Chemie, Stiftstr. 34-36, D-45470 Mülheim an der Ruhr, Germany
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Singh WM, Pegram D, Duan H, Kalita D, Simone P, Emmert GL, Zhao X. Hydrogen Production Coupled to Hydrocarbon Oxygenation from Photocatalytic Water Splitting. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201106494] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Singh WM, Pegram D, Duan H, Kalita D, Simone P, Emmert GL, Zhao X. Hydrogen production coupled to hydrocarbon oxygenation from photocatalytic water splitting. Angew Chem Int Ed Engl 2011; 51:1653-6. [PMID: 22095876 DOI: 10.1002/anie.201106494] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2011] [Indexed: 11/05/2022]
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Belatik A, Essemine J, Hotchandani S, Carpentier R. Afterglow Thermoluminescence Measured in Isolated Chloroplasts. Photochem Photobiol 2011; 88:67-75. [DOI: 10.1111/j.1751-1097.2011.01016.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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47
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Abasova L, Deák Z, Schwarz R, Vass I. The role of the PsbU subunit in the light sensitivity of PSII in the cyanobacterium Synechococcus 7942. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2011; 105:149-56. [DOI: 10.1016/j.jphotobiol.2011.08.004] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2011] [Revised: 08/05/2011] [Accepted: 08/11/2011] [Indexed: 10/17/2022]
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Radaram B, Ivie JA, Singh WM, Grudzien RM, Reibenspies JH, Webster CE, Zhao X. Water Oxidation by Mononuclear Ruthenium Complexes with TPA-Based Ligands. Inorg Chem 2011; 50:10564-71. [DOI: 10.1021/ic200050g] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Bhasker Radaram
- Department of Chemistry, The University of Memphis, Memphis, Tennessee 38152, United States
| | - Jeffrey A. Ivie
- Department of Chemistry, Physics, and Astronomy, Georgia College & State University, Milledgeville, Georgia 31061, United States
| | | | - Rafal M. Grudzien
- Department of Chemistry, The University of Memphis, Memphis, Tennessee 38152, United States
| | - Joseph H. Reibenspies
- Department of Chemistry, Texas A&M University, College Station, Texas 77843-3255, United States
| | - Charles Edwin Webster
- Department of Chemistry, The University of Memphis, Memphis, Tennessee 38152, United States
| | - Xuan Zhao
- Department of Chemistry, The University of Memphis, Memphis, Tennessee 38152, United States
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Belyaeva NE, Bulychev AA, Riznichenko GY, Rubin AB. A model of photosystem II for the analysis of fast fluorescence rise in plant leaves. Biophysics (Nagoya-shi) 2011. [DOI: 10.1134/s0006350911030055] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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50
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Kawakami K, Umena Y, Kamiya N, Shen JR. Structure of the catalytic, inorganic core of oxygen-evolving photosystem II at 1.9Å resolution. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2011; 104:9-18. [PMID: 21543235 DOI: 10.1016/j.jphotobiol.2011.03.017] [Citation(s) in RCA: 135] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2011] [Revised: 03/25/2011] [Accepted: 03/26/2011] [Indexed: 10/18/2022]
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