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Fournier JB. Multibody interactions between protein inclusions in the pointlike curvature model for tense and tensionless membranes. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2024; 47:64. [PMID: 39414663 DOI: 10.1140/epje/s10189-024-00456-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2024] [Accepted: 09/18/2024] [Indexed: 10/18/2024]
Abstract
The pointlike curvature constraint (PCC) model and the disk detachment angle (DDA) model for the deformation-mediated interaction of conical integral protein inclusions in biomembranes are compared in the small deformation regime. Given the radius of membrane proteins, which is comparable to the membrane thickness, it is not obvious which of the two models should be considered the most adequate. For two proteins in a tensionless membranes, the PCC and DDA models coincide at the leading-order ∼ r - 4 in their separation but differ at the next order. Yet, for distances larger than twice the proteins diameter, the difference is less than 10 % . Like the DDA model, the PCC model includes all multibody interactions in a non-approximate way. The asymptotic ∼ r - 4 many-body energy of triangular and square protein clusters is exactly the same in both models. Pentagonal clusters, however, behave differently; they have a vanishing energy in the PCC model, while they have a non-vanishing weaker ∼ r - 6 asymptotic power law in the DDA model. We quantify the importance of multibody interactions in small polygonal clusters of three, four and five inclusions with identical or opposite curvatures in tensionless or tense membranes. We find that the pairwise approximation is almost always very poor. At short separation, the three-body interaction is not sufficient to account for the full many-body interaction. This is confirmed by equilibrium Monte Carlo simulations of up to ten inclusions.
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Affiliation(s)
- Jean-Baptiste Fournier
- Université Paris Cité, CNRS, Laboratoire Matière et Systèmes Complexes (MSC), 75013, Paris, France.
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2
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Azadbakht A, Meadowcroft B, Májek J, Šarić A, Kraft DJ. Nonadditivity in interactions between three membrane-wrapped colloidal spheres. Biophys J 2024; 123:307-316. [PMID: 38158654 PMCID: PMC10870171 DOI: 10.1016/j.bpj.2023.12.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 10/27/2023] [Accepted: 12/22/2023] [Indexed: 01/03/2024] Open
Abstract
Many cell functions require a concerted effort from multiple membrane proteins, for example, for signaling, cell division, and endocytosis. One contribution to their successful self-organization stems from the membrane deformations that these proteins induce. While the pairwise interaction potential of two membrane-deforming spheres has recently been measured, membrane-deformation-induced interactions have been predicted to be nonadditive, and hence their collective behavior cannot be deduced from this measurement. We here employ a colloidal model system consisting of adhesive spheres and giant unilamellar vesicles to test these predictions by measuring the interaction potential of the simplest case of three membrane-deforming, spherical particles. We quantify their interactions and arrangements and, for the first time, experimentally confirm and quantify the nonadditive nature of membrane-deformation-induced interactions. We furthermore conclude that there exist two favorable configurations on the membrane: (1) a linear and (2) a triangular arrangement of the three spheres. Using Monte Carlo simulations, we corroborate the experimentally observed energy minima and identify a lowering of the membrane deformation as the cause for the observed configurations. The high symmetry of the preferred arrangements for three particles suggests that arrangements of many membrane-deforming objects might follow simple rules.
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Affiliation(s)
- Ali Azadbakht
- Soft Matter Physics, Huygens-Kamerlingh Onnes Laboratory, Leiden University, Leiden, the Netherlands
| | - Billie Meadowcroft
- Institute of Science and Technology Austria, Klosterneuburg, Austria; Department of Physics and Astronomy, Institute for the Physics of Living Systems, University College London, London, United Kingdom
| | - Juraj Májek
- Institute of Science and Technology Austria, Klosterneuburg, Austria
| | - Anđela Šarić
- Institute of Science and Technology Austria, Klosterneuburg, Austria
| | - Daniela J Kraft
- Soft Matter Physics, Huygens-Kamerlingh Onnes Laboratory, Leiden University, Leiden, the Netherlands.
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3
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Noguchi H, Tozzi C, Arroyo M. Binding of anisotropic curvature-inducing proteins onto membrane tubes. SOFT MATTER 2022; 18:3384-3394. [PMID: 35416229 DOI: 10.1039/d2sm00274d] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Bin/Amphiphysin/Rvs superfamily proteins and other curvature-inducing proteins have anisotropic shapes and anisotropically bend biomembranes. Here, we report how the anisotropic proteins bind the membrane tube and are orientationally ordered using mean-field theory including an orientation-dependent excluded volume. The proteins exhibit a second-order or first-order nematic transition with increasing protein density depending on the radius of the membrane tube. The tube curvatures for the maximum protein binding and orientational order are different and varied by the protein density and rigidity. As the external force along the tube axis increases, a first-order transition from a large tube radius with low protein density to a small radius with high density occurs once, and subsequently, the protein orientation tilts to the tube-axis direction. When an isotropic bending energy is used for the proteins with an elliptic shape, the force-dependence curves become symmetric and the first-order transition occurs twice. This theory quantitatively reproduces the results of meshless membrane simulation for short proteins, whereas deviations are seen for long proteins owing to the formation of protein clusters.
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Affiliation(s)
- Hiroshi Noguchi
- Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277-8581, Japan.
| | - Caterina Tozzi
- Universitat Politèdcnica de Catalunya-BarcelonaTech, 08034 Barcelona, Spain
| | - Marino Arroyo
- Universitat Politèdcnica de Catalunya-BarcelonaTech, 08034 Barcelona, Spain
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), 08028 Barcelona, Spain
- Centre Internacional de Mètodes Numèrics en Enginyeria (CIMNE), 08034 Barcelona, Spain
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4
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Gao J, Hou R, Li L, Hu J. Membrane-Mediated Interactions Between Protein Inclusions. Front Mol Biosci 2021; 8:811711. [PMID: 35004858 PMCID: PMC8727768 DOI: 10.3389/fmolb.2021.811711] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Accepted: 11/30/2021] [Indexed: 11/13/2022] Open
Abstract
Integral or peripheral membrane proteins, or protein oligomers often get close to each other on cell membranes and carry out biological tasks in a collective manner. In addition to electrostatic and van der Waals interactions, those proteins also experience membrane-mediated interactions, which may be necessary for their functionality. The membrane-mediated interactions originate from perturbation of lipid membranes by the presence of protein inclusions, and have been the subject of intensive research in membrane biophysics. Here we review both theoretical and numerical studies of such interactions for membrane proteins and for nanoparticles bound to lipid membranes.
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Affiliation(s)
- Jie Gao
- Kuang Yaming Honors School, Nanjing University, Nanjing, China
| | - Ruihan Hou
- Kuang Yaming Honors School, Nanjing University, Nanjing, China
| | - Long Li
- State Key Laboratory of Nonlinear Mechanics (LNM) and Beijing Key Laboratory of Engineered Construction and Mechanobiology, Institute of Mechanics, Chinese Academy of Sciences, Beijing, China
| | - Jinglei Hu
- Kuang Yaming Honors School, Nanjing University, Nanjing, China
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5
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Goutaland Q, van Wijland F, Fournier JB, Noguchi H. Binding of thermalized and active membrane curvature-inducing proteins. SOFT MATTER 2021; 17:5560-5573. [PMID: 33978669 DOI: 10.1039/d1sm00027f] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The phase behavior of a membrane induced by the binding of curvature-inducing proteins is studied by a combination of analytical and numerical approaches. In thermal equilibrium under the detailed balance between binding and unbinding, the membrane exhibits three phases: an unbound uniform flat phase (U), a bound uniform flat phase (B), and a separated/corrugated phase (SC). In the SC phase, the bound proteins form hexagonally-ordered bowl-shaped domains. The transitions between the U and SC phases and between the B and SC phases are second order and first order, respectively. At a small spontaneous curvature of the protein or high surface tension, the transition between B and SC phases becomes continuous. Moreover, a first-order transition between the U and B phases is found at zero spontaneous curvature driven by the Casimir-like interactions between rigid proteins. Furthermore, nonequilibrium dynamics is investigated by the addition of active binding and unbinding at a constant rate. The active binding and unbinding processes alter the stability of the SC phase.
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Affiliation(s)
- Quentin Goutaland
- Laboratoire Matière et Systèmes Complexes (MSC), Université de Paris & CNRS, 75013 Paris, France
| | - Frédéric van Wijland
- Laboratoire Matière et Systèmes Complexes (MSC), Université de Paris & CNRS, 75013 Paris, France
| | - Jean-Baptiste Fournier
- Laboratoire Matière et Systèmes Complexes (MSC), Université de Paris & CNRS, 75013 Paris, France
| | - Hiroshi Noguchi
- Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277-8581, Japan. and Institut Lumière Matière, UMR 5306 CNRS, Université Lyon 1, F-69622 Villeurbanne, France
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Goutaland Q, Fournier JB. Saffman-Delbrück and beyond: A pointlike approach. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2019; 42:156. [PMID: 31834595 DOI: 10.1140/epje/i2019-11922-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 11/29/2019] [Indexed: 06/10/2023]
Abstract
We show that a very good analytical approximation of Saffman-Delbrück's (SD) law (mobility of a bio-membrane inclusion) can be obtained easily from the velocity field produced by a pointlike force in a 2D fluid embedded in a solvent, by using a small wavelength cutoff of the order of the particle's radius a . With this method, we obtain analytical generalizations of the SD law that take into account the bilayer nature of the membrane and the intermonolayer friction b . We also derive, in a calculation that consistently couples the quasi-planar two-dimensional (2D) membrane flow with the 3D solvent flow, the correction to the SD law arising when the inclusion creates a local spontaneous curvature. For an inclusion spanning a flat bilayer, the SD law is found to hold simply upon replacing the 2D viscosity [Formula: see text] of the membrane by the sum of the monolayer viscosities, without influence of b as long as b is above a threshold in practice well below known experimental values. For an inclusion located in only one of the two monolayers (or adhering to one monolayer), the SD law is influenced by b when b < [Formula: see text]/(4a2) . In this case, the mobility can be increased by up to a factor of two, as the opposite monolayer is not fully dragged by the inclusion. For an inclusion creating a local spontaneous curvature, we show that the total friction is the sum of the SD friction and that due to the pull-back created by the membrane deformation, a point that was assumed without demonstration in the literature.
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Affiliation(s)
- Quentin Goutaland
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université de Paris, 75205, Paris Cedex 13, France
| | - Jean-Baptiste Fournier
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université de Paris, 75205, Paris Cedex 13, France.
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7
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Le Roux AL, Quiroga X, Walani N, Arroyo M, Roca-Cusachs P. The plasma membrane as a mechanochemical transducer. Philos Trans R Soc Lond B Biol Sci 2019; 374:20180221. [PMID: 31431176 PMCID: PMC6627014 DOI: 10.1098/rstb.2018.0221] [Citation(s) in RCA: 119] [Impact Index Per Article: 19.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/22/2019] [Indexed: 12/20/2022] Open
Abstract
Cells are constantly submitted to external mechanical stresses, which they must withstand and respond to. By forming a physical boundary between cells and their environment that is also a biochemical platform, the plasma membrane (PM) is a key interface mediating both cellular response to mechanical stimuli, and subsequent biochemical responses. Here, we review the role of the PM as a mechanosensing structure. We first analyse how the PM responds to mechanical stresses, and then discuss how this mechanical response triggers downstream biochemical responses. The molecular players involved in PM mechanochemical transduction include sensors of membrane unfolding, membrane tension, membrane curvature or membrane domain rearrangement. These sensors trigger signalling cascades fundamental both in healthy scenarios and in diseases such as cancer, which cells harness to maintain integrity, keep or restore homeostasis and adapt to their external environment. This article is part of a discussion meeting issue 'Forces in cancer: interdisciplinary approaches in tumour mechanobiology'.
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Affiliation(s)
- Anabel-Lise Le Roux
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), Barcelona 08028, Spain
| | - Xarxa Quiroga
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), Barcelona 08028, Spain
| | - Nikhil Walani
- LaCàN, Universitat Politècnica de Catalunya-BarcelonaTech, Spain
| | - Marino Arroyo
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), Barcelona 08028, Spain
- LaCàN, Universitat Politècnica de Catalunya-BarcelonaTech, Spain
| | - Pere Roca-Cusachs
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), Barcelona 08028, Spain
- Department of Biomedical Sciences, Universitat de Barcelona, Barcelona 08036, Spain
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8
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Conformational switching of chiral colloidal rafts regulates raft-raft attractions and repulsions. Proc Natl Acad Sci U S A 2019; 116:15792-15801. [PMID: 31320590 DOI: 10.1073/pnas.1900615116] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Membrane-mediated particle interactions depend both on the properties of the particles themselves and the membrane environment in which they are suspended. Experiments have shown that chiral rod-like inclusions dissolved in a colloidal membrane of opposite handedness assemble into colloidal rafts, which are finite-sized reconfigurable droplets consisting of a large but precisely defined number of rods. We systematically tune the chirality of the background membrane and find that, in the achiral limit, colloidal rafts acquire complex structural properties and interactions. In particular, rafts can switch between 2 chiral states of opposite handedness, which alters the nature of the membrane-mediated raft-raft interactions. Rafts with the same chirality have long-ranged repulsions, while those with opposite chirality acquire attractions with a well-defined minimum. Both attractive and repulsive interactions are qualitatively explained by a continuum model that accounts for the coupling between the membrane thickness and the local tilt of the constituent rods. These switchable interactions enable assembly of colloidal rafts into intricate higher-order architectures, including stable tetrameric clusters and "ionic crystallites" of counter-twisting domains organized on a binary square lattice. Furthermore, the properties of individual rafts, such as their sizes, are controlled by their complexation with other rafts. The emergence of these complex behaviors can be rationalized purely in terms of generic couplings between compositional and orientational order of fluids of rod-like elements. Thus, the uncovered principles might have relevance for conventional lipid bilayers, in which the assembly of higher-order structures is also mediated by complex membrane-mediated interactions.
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9
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Microparticle Assembly Pathways on Lipid Membranes. Biophys J 2017; 113:1037-1046. [PMID: 28877487 DOI: 10.1016/j.bpj.2017.07.019] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Revised: 07/25/2017] [Accepted: 07/31/2017] [Indexed: 11/20/2022] Open
Abstract
Understanding interactions between microparticles and lipid membranes is of increasing importance, especially for unraveling the influence of microplastics on our health and environment. Here, we study how a short-ranged adhesive force between microparticles and model lipid membranes causes membrane-mediated particle assembly. Using confocal microscopy, we observe the initial particle attachment to the membrane, then particle wrapping, and in rare cases spontaneous membrane tubulation. In the attached state, we measure that the particle mobility decreases by 26%. If multiple particles adhere to the same vesicle, their initial single-particle state determines their interactions and subsequent assembly pathways: 1) attached particles only aggregate when small adhesive vesicles are present in solution, 2) wrapped particles reversibly attract one another by membrane deformation, and 3) a combination of wrapped and attached particles form membrane-mediated dimers, which further assemble into a variety of complex structures. The experimental observation of distinct assembly pathways, induced only by a short-ranged membrane-particle adhesion, shows that a cytoskeleton or other active components are not required for microparticle aggregation. We suggest that this membrane-mediated microparticle aggregation is a reason behind reported long retention times of polymer microparticles in organisms.
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10
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Noguchi H. Acceleration and suppression of banana-shaped-protein-induced tubulation by addition of small membrane inclusions of isotropic spontaneous curvatures. SOFT MATTER 2017; 13:7771-7779. [PMID: 29018843 DOI: 10.1039/c7sm01375b] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Membrane tubulation induced by banana-shaped protein rods is investigated by using coarse-grained meshless membrane simulations. It is found that tubulation is promoted by laterally isotropic membrane inclusions that generate the same sign of spontaneous curvature as the adsorbed protein rods. The inclusions are concentrated in the tubules and reduce the bending energy of the tip of the tubules. On the other hand, inclusions with an opposite curvature suppress tubulation by percolated-network formation at a high protein-rod density while they induce the formation of a spherical membrane bud at a low rod density. When equal amounts of the two types of inclusions (with positive and negative curvatures) are added, their effects cancel each other for the first short period but later the tubulation is slowly accelerated. Positive surface tension suppresses tubulation. Our results suggest that the cooperation of scaffolding of BAR (Bin/Amphiphysin/Rvs) domains and isotropic membrane inclusions is important for tubulation.
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Affiliation(s)
- Hiroshi Noguchi
- Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277-8581, Japan.
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11
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Vahid A, Šarić A, Idema T. Curvature variation controls particle aggregation on fluid vesicles. SOFT MATTER 2017; 13:4924-4930. [PMID: 28677712 DOI: 10.1039/c7sm00433h] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Cellular membranes exhibit a large variety of shapes, strongly coupled to their function. Many biological processes involve dynamic reshaping of membranes, usually mediated by proteins. This interaction works both ways: while proteins influence the membrane shape, the membrane shape affects the interactions between the proteins. To study these membrane-mediated interactions on closed and anisotropically curved membranes, we use colloids adhered to ellipsoidal membrane vesicles as a model system. We find that two particles on a closed system always attract each other, and tend to align with the direction of largest curvature. Multiple particles form arcs, or, at large enough numbers, a complete ring surrounding the vesicle in its equatorial plane. The resulting vesicle shape resembles a snowman. Our results indicate that these physical interactions on membranes with anisotropic shapes can be exploited by cells to drive macromolecules to preferred regions of cellular or intracellular membranes, and utilized to initiate dynamic processes such as cell division. The same principle could be used to find the midplane of an artificial vesicle, as a first step towards dividing it into two equal parts.
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Affiliation(s)
- Afshin Vahid
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands.
| | - Anđela Šarić
- Department of Physics and Astronomy, Institute for the Physics of Living Systems, University College London, Gower Street, London, WC1E 6BT, UK.
| | - Timon Idema
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands.
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12
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Noguchi H, Fournier JB. Membrane structure formation induced by two types of banana-shaped proteins. SOFT MATTER 2017; 13:4099-4111. [PMID: 28540958 DOI: 10.1039/c7sm00305f] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The assembly of banana-shaped rodlike proteins on membranes and the associated membrane shape transformations are investigated by analytical theory and coarse-grained simulations. The membrane-mediated interactions between two banana-shaped inclusions are derived theoretically using a point-like formalism based on fixed anisotropic curvatures, both for zero surface tension and for finite surface tension. On a larger scale, the interactions between the assemblies of such rodlike inclusions are determined analytically. Meshless membrane simulations are performed in the presence of a large number of inclusions of two types, corresponding to the curved rods of opposite curvatures, both for flat membranes and vesicles. Rods of the same type aggregate into linear assemblies perpendicular to the rod axis, leading to membrane tubulation. However, rods of the other type, those of opposite curvature, are attracted to the lateral sides of these assemblies, and stabilize a straight bump structure that prevents tubulation. When the two types of rods have almost opposite curvatures, the bumps attract one another, forming a striped structure. Positive surface tension is found to stabilize stripe formation. The simulation results agree well with the theoretical predictions provided the point-like curvatures of the model are scaled-down to account for the effective flexibility of the simulated rods.
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Affiliation(s)
- Hiroshi Noguchi
- Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277-8581, Japan.
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13
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Golushko IY, Rochal SB, Lorman VL. Multipole analysis of the strain-mediated coupling between proteins adsorbed at tubular lipid membrane surface. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2016; 39:128. [PMID: 28000047 DOI: 10.1140/epje/i2016-16128-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2016] [Accepted: 11/23/2016] [Indexed: 06/06/2023]
Abstract
The tubular lipid membranes (TLMs) pulled out from vesicles are often used in in vitro studies of the interactions between curvature-inducing proteins and highly curved membranes. The protein molecules adsorbed at the membrane surface deform the TLM and couple with each other due to the induced strain. Here we propose an approach which models the single curvature-inducing protein action on the lipid bilayer by the multipole, the superposition of the point forces applied to the membrane in the region of the protein adsorption. We show that to be localized in the area of the protein size at the TLM surface, the force multipoles satisfying the mechanical equilibrium conditions should be composed of three or more point forces. The protein coupling energy mediated by the membrane strain is studied in detail. In the region of the tubular membrane stability the maximal distance between two neighboring interacting protein-induced force multipoles is estimated to be of the order of the TLM cross section perimeter. In the vicinity of the TLM instability in the region of the vanishing stretching force applied to the TLM, the interaction radius increases drastically. The high affinity of the single curvature-inducing protein molecule to the regions in the vicinity of the TLM ends is explained and related to the boundary conditions in the experimental set-ups. The reasons for the aggregate formation on the membrane surface are also discussed.
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Affiliation(s)
- I Yu Golushko
- Faculty of Physics, Southern Federal University, 5 Zorge Street, 344090, Rostov-on-Don, Russia.
| | - S B Rochal
- Faculty of Physics, Southern Federal University, 5 Zorge Street, 344090, Rostov-on-Don, Russia
| | - V L Lorman
- Laboratoire Charles Coulomb, UMR 5221 CNRS - Université de Montpellier, Place E. Bataillon, F-34095, Montpellier Cedex 5, France
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14
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Vahid A, Idema T. Pointlike Inclusion Interactions in Tubular Membranes. PHYSICAL REVIEW LETTERS 2016; 117:138102. [PMID: 27715092 DOI: 10.1103/physrevlett.117.138102] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2015] [Indexed: 06/06/2023]
Abstract
Membrane tubes and tubular networks are ubiquitous in living cells. Inclusions like proteins are vital for both the stability and the dynamics of such networks. These inclusions interact via the curvature deformations they impose on the membrane. We analytically study the resulting membrane mediated interactions in strongly curved tubular membranes. We model inclusions as constraints coupled to the curvature tensor of the membrane tube. First, as special test cases, we analyze the interaction between ring- and rod-shaped inclusions. Using Monte Carlo simulations, we further show how pointlike inclusions interact to form linear aggregates. To minimize the curvature energy of the membrane, inclusions self-assemble into either line- or ringlike patterns. Our results show that the global curvature of the membrane strongly affects the interactions between proteins embedded in it, and can lead to the spontaneous formation of biologically relevant structures.
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Affiliation(s)
- Afshin Vahid
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Timon Idema
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
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15
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Lipid membrane-mediated attraction between curvature inducing objects. Sci Rep 2016; 6:32825. [PMID: 27618764 PMCID: PMC5020653 DOI: 10.1038/srep32825] [Citation(s) in RCA: 64] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Accepted: 08/16/2016] [Indexed: 01/18/2023] Open
Abstract
The interplay of membrane proteins is vital for many biological processes, such as cellular transport, cell division, and signal transduction between nerve cells. Theoretical considerations have led to the idea that the membrane itself mediates protein self-organization in these processes through minimization of membrane curvature energy. Here, we present a combined experimental and numerical study in which we quantify these interactions directly for the first time. In our experimental model system we control the deformation of a lipid membrane by adhering colloidal particles. Using confocal microscopy, we establish that these membrane deformations cause an attractive interaction force leading to reversible binding. The attraction extends over 2.5 times the particle diameter and has a strength of three times the thermal energy (-3.3 kBT). Coarse-grained Monte-Carlo simulations of the system are in excellent agreement with the experimental results and prove that the measured interaction is independent of length scale. Our combined experimental and numerical results reveal membrane curvature as a common physical origin for interactions between any membrane-deforming objects, from nanometre-sized proteins to micrometre-sized particles.
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16
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Noguchi H. Shape deformation of lipid membranes by banana-shaped protein rods: Comparison with isotropic inclusions and membrane rupture. Phys Rev E 2016; 93:052404. [PMID: 27300921 DOI: 10.1103/physreve.93.052404] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2016] [Indexed: 06/06/2023]
Abstract
The assembly of curved protein rods on fluid membranes is studied using implicit-solvent meshless membrane simulations. As the rod curvature increases, the rods on a membrane tube assemble along the azimuthal direction first and subsequently along the longitudinal direction. Here, we show that both transition curvatures decrease with increasing rod stiffness. For comparison, curvature-inducing isotropic inclusions are also simulated. When the isotropic inclusions have the same bending rigidity as the other membrane regions, the inclusions are uniformly distributed on the membrane tubes and vesicles even for large spontaneous curvature of the inclusions. However, the isotropic inclusions with much larger bending rigidity induce shape deformation and are concentrated on the region of a preferred curvature. For high rod density, high rod stiffness, and/or low line tension of the membrane edge, the rod assembly induces vesicle rupture, resulting in the formation of a high-genus vesicle. A gradual change in the curvature suppresses this rupture. Hence, large stress, compared to the edge tension, induced by the rod assembly is the key factor determining rupture. For rod curvature with the opposite sign to the vesicle curvature, membrane rupture induces inversion of the membrane, leading to division into multiple vesicles as well as formation of a high-genus vesicle.
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Affiliation(s)
- Hiroshi Noguchi
- Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277-8581, Japan
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Hutchison JB, Karunanayake Mudiyanselage APKK, Weis RM, Dinsmore AD. Osmotically-induced tension and the binding of N-BAR protein to lipid vesicles. SOFT MATTER 2016; 12:2465-2472. [PMID: 26822233 DOI: 10.1039/c5sm02496j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The binding affinity of a curvature-sensing protein domain (N-BAR) is measured as a function of applied osmotic stress while the membrane curvature is nearly constant. Varying the osmotic stress allows us to control membrane tension, which provides a probe of the mechanism of binding. We study the N-BAR domain of the Drosophila amphiphysin and monitor its binding on 50 nm-radius vesicles composed of 90 mol% DOPC and 10 mol% PIP. We find that the bound fraction of N-BAR is enhanced by a factor of approximately 6.5 when the tension increases from zero to 2.6 mN m(-1). This tension-induced response can be explained by the hydrophobic insertion mechanism. From the data we extract a hydrophobic domain area that is consistent with known structure. These results indicate that membrane stress and strain could play a major role in the previously reported curvature-affinity of N-BAR.
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Affiliation(s)
- Jaime B Hutchison
- Department of Physics, University of Massachusetts Amherst, Hasbrouck Lab 411, 666 North Pleasant Street, Amherst, MA 01003, USA.
| | | | - Robert M Weis
- Department of Chemistry, University of Massachusetts Amherst, USA
| | - Anthony D Dinsmore
- Department of Physics, University of Massachusetts Amherst, Hasbrouck Lab 411, 666 North Pleasant Street, Amherst, MA 01003, USA.
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18
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Membrane tubule formation by banana-shaped proteins with or without transient network structure. Sci Rep 2016; 6:20935. [PMID: 26863901 PMCID: PMC4750063 DOI: 10.1038/srep20935] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2015] [Accepted: 01/13/2016] [Indexed: 11/08/2022] Open
Abstract
In living cells, membrane morphology is regulated by various proteins. Many membrane reshaping proteins contain a Bin/Amphiphysin/Rvs (BAR) domain, which consists of a banana-shaped rod. The BAR domain bends the biomembrane along the rod axis and the features of this anisotropic bending have recently been studied. Here, we report on the role of the BAR protein rods in inducing membrane tubulation, using large-scale coarse-grained simulations. We reveal that a small spontaneous side curvature perpendicular to the rod can drastically alter the tubulation dynamics at high protein density, whereas no significant difference is obtained at low density. A percolated network is intermediately formed depending on the side curvature. This network suppresses tubule protrusion, leading to the slow formation of fewer tubules. Thus, the side curvature, which is generated by protein–protein and membrane–protein interactions, plays a significant role in tubulation dynamics. We also find that positive surface tensions and the vesicle membrane curvature can stabilize this network structure by suppressing the tubulation.
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19
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Schweitzer Y, Kozlov MM. Membrane-mediated interaction between strongly anisotropic protein scaffolds. PLoS Comput Biol 2015; 11:e1004054. [PMID: 25710602 PMCID: PMC4339200 DOI: 10.1371/journal.pcbi.1004054] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2014] [Accepted: 11/21/2014] [Indexed: 12/29/2022] Open
Abstract
Specialized proteins serve as scaffolds sculpting strongly curved membranes of intracellular organelles. Effective membrane shaping requires segregation of these proteins into domains and is, therefore, critically dependent on the protein-protein interaction. Interactions mediated by membrane elastic deformations have been extensively analyzed within approximations of large inter-protein distances, small extents of the protein-mediated membrane bending and small deviations of the protein shapes from isotropic spherical segments. At the same time, important classes of the realistic membrane-shaping proteins have strongly elongated shapes with large and highly anisotropic curvature. Here we investigated, computationally, the membrane mediated interaction between proteins or protein oligomers representing membrane scaffolds with strongly anisotropic curvature, and addressed, quantitatively, a specific case of the scaffold geometrical parameters characterizing BAR domains, which are crucial for membrane shaping in endocytosis. In addition to the previously analyzed contributions to the interaction, we considered a repulsive force stemming from the entropy of the scaffold orientation. We computed this interaction to be of the same order of magnitude as the well-known attractive force related to the entropy of membrane undulations. We demonstrated the scaffold shape anisotropy to cause a mutual aligning of the scaffolds and to generate a strong attractive interaction bringing the scaffolds close to each other to equilibrium distances much smaller than the scaffold size. We computed the energy of interaction between scaffolds of a realistic geometry to constitute tens of kBT, which guarantees a robust segregation of the scaffolds into domains.
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Affiliation(s)
- Yonatan Schweitzer
- Department of Physiology and Pharmacology, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel
| | - Michael M. Kozlov
- Department of Physiology and Pharmacology, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel
- * E-mail:
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20
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Ramakrishnan N, Radhakrishnan R. Phenomenology based multiscale models as tools to understand cell membrane and organelle morphologies. ACTA ACUST UNITED AC 2015; 22:129-175. [PMID: 27087801 DOI: 10.1016/bs.adplan.2015.06.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
An intriguing question in cell biology is "how do cells regulate their shape?" It is commonly believed that the observed cellular morphologies are a result of the complex interaction among the lipid molecules (constituting the cell membrane), and with a number of other macromolecules, such as proteins. It is also believed that the common biophysical processes essential for the functioning of a cell also play an important role in cellular morphogenesis. At the cellular scale-where typical dimensions are in the order of micrometers-the effects arising from the molecular scale can either be modeled as equilibrium or non-equilibrium processes. In this chapter, we discuss the dynamically triangulated Monte Carlo technique to model and simulate membrane morphologies at the cellular scale, which in turn can be used to investigate several questions related to shape regulation in cells. In particular, we focus on two specific problems within the framework of isotropic and anisotropic elasticity theories: namely, (i) the origin of complex, physiologically relevant, membrane shapes due to the interaction of the membrane with curvature remodeling proteins, and (ii) the genesis of steady state cellular shapes due to the action of non-equilibrium forces that are generated by the fission and fusion of transport vesicles and by the binding and unbinding of proteins from the parent membrane.
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Affiliation(s)
- N Ramakrishnan
- Department of Chemical and Biomolecular Engineering, Department of Bioengineering, Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA-19104
| | - Ravi Radhakrishnan
- Department of Chemical and Biomolecular Engineering, Department of Bioengineering, Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA-19104
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21
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Deserno M. Fluid lipid membranes: From differential geometry to curvature stresses. Chem Phys Lipids 2015; 185:11-45. [DOI: 10.1016/j.chemphyslip.2014.05.001] [Citation(s) in RCA: 137] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2014] [Revised: 04/21/2014] [Accepted: 05/06/2014] [Indexed: 10/25/2022]
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22
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Yolcu C, Haussman RC, Deserno M. The Effective Field Theory approach towards membrane-mediated interactions between particles. Adv Colloid Interface Sci 2014; 208:89-109. [PMID: 24685271 DOI: 10.1016/j.cis.2014.02.017] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2013] [Revised: 02/14/2014] [Accepted: 02/15/2014] [Indexed: 01/03/2023]
Abstract
Fluid lipid membranes can mediate forces between particles bound to them: A local deformation of the surface geometry created by some object spreads to distant regions, where other objects can respond to it. The physical characteristics of these geometric interactions, and how they are affected by thermal fluctuations, are well described by the simple continuum curvature-elastic Hamiltonian proposed 40 years ago by Wolfgang Helfrich. Unfortunately, while the underlying principles are conceptually straightforward, the corresponding calculations are not-largely because one must enforce boundary conditions for finite-sized objects. This challenge has inspired several heuristic approaches for expressing the problem in a point particle language. While streamlining the calculations of leading order results and enabling predictions for higher order corrections, the ad hoc nature of the reformulation leaves its domain of validity unclear. In contrast, the framework of Effective Field Theory (EFT) provides a systematic way to construct a completely equivalent point particle description. In this review we present a detailed account for how this is accomplished. In particular, we use a familiar example from electrostatics as an analogy to motivate the key steps needed to construct an EFT, most notably capturing finite size information in point-like "polarizabilities," and determining their value through a suitable "matching procedure." The interaction (free) energy then emerges as a systematic cumulant expansion, for which powerful diagrammatic techniques exist, which we also briefly revisit. We then apply this formalism to derive series expansions for interactions between flat and curved particle pairs, multibody interactions, as well as corrections to all these interactions due to thermal fluctuations.
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Affiliation(s)
- Cem Yolcu
- Dept. of Physics, Carnegie Mellon University, Pittsburgh, PA 15213, United States
| | - Robert C Haussman
- Dept. of Physics, Carnegie Mellon University, Pittsburgh, PA 15213, United States
| | - Markus Deserno
- Dept. of Physics, Carnegie Mellon University, Pittsburgh, PA 15213, United States.
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23
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Fournier JB. Dynamics of the force exchanged between membrane inclusions. PHYSICAL REVIEW LETTERS 2014; 112:128101. [PMID: 24724681 DOI: 10.1103/physrevlett.112.128101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2013] [Indexed: 06/03/2023]
Abstract
We study the dynamical response of a fluid membrane to the sudden conformation change of active inclusions linearly coupled to the membrane curvature. The mutual force between two inclusions triggered simultaneously is shown to exhibit a transient maximum much larger than the equilibrium force. Even in the presence of tension, this dynamical interaction is long range over distances much larger than the correlation length. We derive the scaling laws describing these phenomena analytically, and we stress the importance of the damping due to intermonolayer friction.
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Affiliation(s)
- Jean-Baptiste Fournier
- Université Paris Diderot, Sorbonne Paris Cité, Laboratoire Matière et Systèmes Complexes (MSC), UMR 7057 CNRS, F-75205 Paris, France
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24
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Computational Studies of Biomembrane Systems: Theoretical Considerations, Simulation Models, and Applications. FROM SINGLE MOLECULES TO NANOSCOPICALLY STRUCTURED MATERIALS 2013. [DOI: 10.1007/12_2013_258] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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25
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Akabori K, Santangelo CD. Membrane morphology induced by anisotropic proteins. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 84:061909. [PMID: 22304118 DOI: 10.1103/physreve.84.061909] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2011] [Indexed: 05/31/2023]
Abstract
There are a great many proteins that localize to and collectively generate curvature in biological fluid membranes. We study changes in the topology of fluid membranes due to the presence of highly anisotropic, curvature-inducing proteins. Generically, we find a surprisingly rich phase diagram with phases of both positive and negative Gaussian curvature. As a concrete example modeled on experiments, we find that a lamellar phase in a negative Gaussian curvature regime exhibits a propensity to form screw dislocations of definite Burgers scalar but of both chiralities.
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Affiliation(s)
- Kiyotaka Akabori
- Department of Physics, University of Massachusetts, Amherst, Massachusetts 01003, USA.
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26
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Schmidt NW, Mishra A, Lai GH, Davis M, Sanders LK, Tran D, Garcia A, Tai KP, McCray PB, Ouellette AJ, Selsted ME, Wong GCL. Criterion for amino acid composition of defensins and antimicrobial peptides based on geometry of membrane destabilization. J Am Chem Soc 2011; 133:6720-7. [PMID: 21473577 DOI: 10.1021/ja200079a] [Citation(s) in RCA: 158] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Defensins comprise a potent class of membrane disruptive antimicrobial peptides (AMPs) with well-characterized broad spectrum and selective microbicidal effects. By using high-resolution synchrotron small-angle X-ray scattering to investigate interactions between heterogeneous membranes and members of the defensin subfamilies, α-defensins (Crp-4), β-defensins (HBD-2, HBD-3), and θ-defensins (RTD-1, BTD-7), we show how these peptides all permeabilize model bacterial membranes but not model eukaryotic membranes: defensins selectively generate saddle-splay ("negative Gaussian") membrane curvature in model membranes rich in negative curvature lipids such as those with phosphoethanolamine (PE) headgroups. These results are shown to be consistent with vesicle leakage assays. A mechanism of action based on saddle-splay membrane curvature generation is broadly enabling, because it is a necessary condition for processes such as pore formation, blebbing, budding, and vesicularization, all of which destabilize the barrier function of cell membranes. Importantly, saddle-splay membrane curvature generation places constraints on the amino acid composition of membrane disruptive peptides. For example, we show that the requirement for generating saddle-splay curvature implies that a decrease in arginine content in an AMP can be offset by an increase in both lysine and hydrophobic content. This "design rule" is consistent with the amino acid compositions of 1080 known cationic AMPs.
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Affiliation(s)
- Nathan W Schmidt
- Department of Physics, University of Illinois, Urbana-Champaign, Illinois 61801, USA
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27
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Idema T, Semrau S, Storm C, Schmidt T. Membrane mediated sorting. PHYSICAL REVIEW LETTERS 2010; 104:198102. [PMID: 20867001 DOI: 10.1103/physrevlett.104.198102] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2009] [Indexed: 05/29/2023]
Abstract
Inclusions in biological membranes may interact via deformations they induce on the shape of that very membrane. Such deformations are a purely physical effect, resulting in nonspecific forces between the inclusions. In this Letter we show that this type of interaction can organize membrane domains and hence may play an important biological role. Using a simple analytical model we predict that membrane inclusions sort according to the curvature they impose. We verify this prediction by both numerical simulations and experimental observations of membrane domains in phase separated vesicles.
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Affiliation(s)
- Timon Idema
- Instituut-Lorentz for Theoretical Physics, Leiden University, Post Office Box 9506, 2300 RA Leiden, The Netherlands
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28
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Membrane-mediated interactions measured using membrane domains. Biophys J 2009; 96:4906-15. [PMID: 19527649 DOI: 10.1016/j.bpj.2009.03.050] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2008] [Revised: 03/25/2009] [Accepted: 03/26/2009] [Indexed: 01/22/2023] Open
Abstract
Cell membrane organization is the result of the collective effect of many driving forces. Several of these, such as electrostatic and van der Waals forces, have been identified and studied in detail. In this article, we investigate and quantify another force, the interaction between inclusions via deformations of the membrane shape. For electrically neutral systems, this interaction is the dominant organizing force. As a model system to study membrane-mediated interactions, we use phase-separated biomimetic vesicles that exhibit coexistence of liquid-ordered and liquid-disordered lipid domains. The membrane-mediated interactions between these domains lead to a rich variety of effects, including the creation of long-range order and the setting of a preferred domain size. Our findings also apply to the interaction of membrane protein patches, which induce similar membrane shape deformations and hence experience similar interactions.
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29
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Chapter 6 Salt‐Induced Morphological Transitions in Nonequimolar Catanionic Systems. ACTA ACUST UNITED AC 2009. [DOI: 10.1016/s1554-4516(09)09006-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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30
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Fošnarič M, Iglič A, Slivnik T, Kralj-Iglič V. Flexible Membrane Inclusions and Membrane Inclusions Induced by Rigid Globular Proteins. ADVANCES IN PLANAR LIPID BILAYERS AND LIPOSOMES 2008. [DOI: 10.1016/s1554-4516(08)00006-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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31
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Atilgan E, Sun SX. Shape transitions in lipid membranes and protein mediated vesicle fusion and fission. J Chem Phys 2007; 126:095102. [PMID: 17362130 DOI: 10.1063/1.2483862] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In the cell, the plasma membrane is often densely decorated by transmembrane proteins. The morphology and dynamics of the membrane are strongly influenced by the presence of proteins. In this paper, we use a coarse-grained model to explore the composite membrane-protein system and develop a simulation methodology based on thermodynamic integration to examine free energy changes during membrane shape transitions. The authors show that a critical concentration of conical membrane proteins or proteins with nonzero spontaneous curvature can drive the formation of small vesicles. The driving force of vesicle budding stems from the preference of proteins to gather in regions of high curvature. A sufficiently high concentration of proteins therefore can influence the topology of the membrane. The biological significance of our results is discussed.
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Affiliation(s)
- Erdinç Atilgan
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA
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32
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Fosnaric M, Iglic A, May S. Influence of rigid inclusions on the bending elasticity of a lipid membrane. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 74:051503. [PMID: 17279913 DOI: 10.1103/physreve.74.051503] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2006] [Indexed: 05/13/2023]
Abstract
We model the influence of rigid inclusions on the curvature elasticity of a lipid membrane. Our focus is on conelike transmembrane inclusions that are able to induce long-range deformations in the host bilayer membrane. The elastic properties of the membrane are described in terms of curvature and tilt elasticity. The latter adds an additional degree of freedom that allows the membrane to accommodate an inclusion not only through a curvature deformation but also via changes in lipid tilt. Using a (mean-field level) cell model for homogeneously distributed inclusions in a small membrane segment of prescribed (mesoscopic-scale) spherical shape, we calculate the optimal microscopic-scale deviation of the membrane shape around the intercalated inclusions and the corresponding free energy, analytically. We show that the lipid tilt degree of freedom can lead to local softening of the inclusion-containing lipid bilayer segment. The predicted softening requires a sufficiently small value of the tilt modulus; its origin lies in the reduction of the excess membrane-inclusion interaction energy. We compare our results to the case of suppressed microscopic shape relaxation. Here, too, local softening of the membrane is possible.
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Affiliation(s)
- Miha Fosnaric
- Laboratory of Physics, Faculty of Electrical Engineering, University of Ljubljana, Trzaska 25, SI-1000 Ljubljana, Slovenia.
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33
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Dean DS, Manghi M. Fluctuation-induced interactions between domains in membranes. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 74:021916. [PMID: 17025481 DOI: 10.1103/physreve.74.021916] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2005] [Revised: 07/03/2006] [Indexed: 05/12/2023]
Abstract
We study a model lipid bilayer composed of a mixture of two incompatible lipid types which have a natural tendency to segregate in the absence of membrane fluctuations. The membrane is mechanically characterized by a local bending rigidity kappa(phi) which varies with the average local lipid composition phi. We show, in the case where kappa varies weakly with phi, that the effective interaction between lipids of the same type either can be everywhere attractive or can have a repulsive component at intermediate distances greater than the typical lipid size. When this interaction has a repulsive component, it can prevent macrophase separation and lead to separation in mesophases with a finite domain size. This effect could be relevant to certain experimental and numerical observations of mesoscopic domains in such systems.
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Affiliation(s)
- D S Dean
- Laboratoire de Physique Théorique, UMR CNRS 5152, IRSAMC, Université Paul Sabatier, 118 route de Narbonne, 31062 Toulouse Cedex 04, France
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34
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Fosnaric M, Bohinc K, Gauger DR, Iglic A, Kralj-Iglic V, May S. The influence of anisotropic membrane inclusions on curvature elastic properties of lipid membranes. J Chem Inf Model 2006; 45:1652-61. [PMID: 16309269 DOI: 10.1021/ci050171t] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A membrane inclusion can be defined as a complex of protein or peptide and the surrounding significantly distorted lipids. We suggest a theoretical model that allows for the estimation of the influence of membrane inclusions on the curvature elastic properties of lipid membranes. Our treatment includes anisotropic inclusions whose energetics depends on their in-plane orientation within the membrane. On the basis of continuum elasticity theory, we calculate the inclusion-membrane interaction energy that reflects the protein or peptide-induced short-ranged elastic deformation of a bent lipid layer. A numerical estimate of the corresponding interaction constants indicates the ability of inclusions to sense membrane bending and to accumulate at regions of favorable curvature, matching the effective shape of the inclusions. Strongly anisotropic inclusions interact favorably with lipid layers that adopt saddlelike curvature; such structures may be stabilized energetically. We explore this possibility for the case of vesicle budding where we consider a shape sequence of closed, axisymmetric vesicles that form a (saddle-curvature adopting) membrane neck. It appears that not only isotropic but also strongly anisotropic inclusions can significantly contribute to the budding energetics, a finding that we discuss in terms of recent experiments.
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Affiliation(s)
- Miha Fosnaric
- Laboratory of Physics, Faculty of Electrical Engineering, University of Ljubljana, TrZaska 25, 1000 Ljubljana, Slovenia
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35
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Weikl TR. Indirect interactions of membrane-adsorbed cylinders. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2003; 12:265-273. [PMID: 15007662 DOI: 10.1140/epje/i2003-10058-x] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Biological and biomimetic membranes often contain aggregates of embedded or adsorbed macromolecules. In this paper, the indirect interactions of cylindrical objects adhering to a planar membrane are considered theoretically. The adhesion of the cylinders causes a local perturbation of the equilibrium membrane shape, which leads to membrane-mediated interactions. For a planar membrane under lateral tension, the interaction is repulsive for a pair of cylinders adhering to the same side of the membrane, and attractive for cylinders adhering at opposite membrane sides. For a membrane in an external harmonic potential, the interaction of adsorbed cylinders is always attractive and increases if forces perpendicular to the membrane act on the cylinders.
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Affiliation(s)
- T R Weikl
- Max-Planck-Institut für Kolloid- und Grenzflächenforschung, 14424 , Potsdam, Germany.
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36
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Abstract
Recent structural findings have shown that dynamin, a cytosol protein playing a key-role in clathrin-mediated endocytosis, inserts partly within the lipid bilayer and tends to self-assemble around lipid tubules. Taking into account these observations, we make the hypothesis that individual membrane-inserted dynamins imprint a local cylindrical curvature to the membrane. This imprint may give rise to long-range mechanical forces mediated by the elasticity of the membrane. Calculating the resulting many-body interaction between a collection of inserted dynamins and a membrane bud, we find a regime in which the dynamins are elastically recruited by the bud to form a collar around its neck, which is reminiscent of the actual process preempting vesicle scission. This physical mechanism might therefore be implied in the recruitment of dynamins by clathrin coats.
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Affiliation(s)
- Jean-Baptiste Fournier
- Laboratoire de physico-chimie théorique, FR CNRS 2438 Matière et Systèmes complexes, ESPCI, 10, rue Vauquelin, 75231 Paris, France.
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