1
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Dhakal B, Mandhapati A, Park S, Sun L, Chaikof EL. Insights Derived from the Synthesis of a Complex Core 2 Glycan. J Org Chem 2024; 89:11641-11658. [PMID: 39087956 DOI: 10.1021/acs.joc.4c01345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/02/2024]
Abstract
We describe the synthesis of a benzoyl-based C2-O-sLeX-Thr-COOH building block devoid of any aglycone transfer or orthoester-formed byproducts. The absence of byproducts was achieved in the course of both [1 + 1] glycosylation reactions with thiophenol aglycone containing galactose acceptors, as well as a [2 + 2] glycosylation in the presence of a p-methoxy benzyl containing glucosamine-fucose disaccharide. We also report an efficient [2 + 1 + 1] synthesis of a peracetylated sLeX en route to a peracetylated C2-O-sLeX-Thr-COOH. While the total synthesis of the latter compound was recently reported by a related route, the divergent [2 + 1 + 1] synthesis provided good reaction yields for each step of the sequence, establishing this scheme as an alternate approach to the peracetylated C2-O-sLeX-Thr-COOH. Importantly, the current report details the role of a variety of hydroxy-protecting groups, including acetyl, benzoyl, p-methoxy benzyl, and naphthylmethyl that may be considered in designing a route to this complex Core 2 glycan. While we have previously described the use of more glycosylation-friendly naphthylmethyl protecting groups, the current synthesis used p-methoxy benzyl protecting groups with excellent reaction yields, demonstrating the feasibility of applying this side reaction-prone protecting group for this challenging synthesis.
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Affiliation(s)
- Bibek Dhakal
- Department of Surgery, Harvard Medical School, Beth Israel Deaconess Medical Center, Boston, Massachusetts 02215, United States
| | - Appi Mandhapati
- Department of Surgery, Harvard Medical School, Beth Israel Deaconess Medical Center, Boston, Massachusetts 02215, United States
| | - Simon Park
- Department of Surgery, Harvard Medical School, Beth Israel Deaconess Medical Center, Boston, Massachusetts 02215, United States
| | - Lijun Sun
- Department of Surgery, Harvard Medical School, Beth Israel Deaconess Medical Center, Boston, Massachusetts 02215, United States
- Harvard Medical School Center for Glycoscience, Harvard Medical School, Boston, Massachusetts 02215, United States
| | - Elliot L Chaikof
- Department of Surgery, Harvard Medical School, Beth Israel Deaconess Medical Center, Boston, Massachusetts 02215, United States
- Harvard Medical School Center for Glycoscience, Harvard Medical School, Boston, Massachusetts 02215, United States
- Wyss Institute of Biologically Inspired Engineering, Harvard University, Boston, Massachusetts 02115, United States
- Division of Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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2
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Landau F, Hermann S, Schelhaas S, Schäfers M, Niemann S, Faust A. 18F-labelled gentiobiose as potential PET-radiotracer for specific bacterial imaging: precursor synthesis, radiolabelling and in vitro evaluation. Nuklearmedizin 2024. [PMID: 39084346 DOI: 10.1055/a-2365-8054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/02/2024]
Abstract
AIM Bacterial infections are a clinical challenge, requiring fast and specific diagnosis to ensure effective treatment. Therefore, this project is dedicated to development of positron emission tomography (PET) radiotracers specifically targeting bacteria. Unlike previously developed bacteria-specific radiotracers, which are successful in detecting Gram-negative bacteria, tracers capable of imaging Gram-positive infections are still lacking. METHODS The disaccharide gentiobiose as abundant part of the cell wall of Gram-positive bacteria could fill this gap. Herein, the synthesis and evaluation of 2'-deoxy-2'-[18F]fluorogentiobiose ([18F]FLA280) is reported. The precursor for radiolabelling was obtained from a convergent synthesis under application of a benzylidene/benzyl group protecting strategy. RESULTS The first catalytic hydrogenation in 18F-radiochemistry is reported as proof of concept. The deprotection was carried out without any side product formation, giving the final radiotracer [18F]FLA280 in good radiochemical yield and excellent radiochemical purity. [18F]FLA280 was proven to be stable in murine and human blood serum for 120 minutes and was subjected to in vitro bacterial uptake studies towards S. aureus and E. coli resulting in a low bacterial uptake. CONCLUSION The observed bacterial uptake indicates that [18F]FLA280 may be not a promising tracer candidate for in vivo translation and alternative candidates particularly for Gram-positive bacteria are required. However, further development on the concept of labelled carbohydrates and cell wall building blocks might be promising.
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Affiliation(s)
- Felicitas Landau
- European Institute for Molecular Imaging, University of Münster, Münster, Germany
- Department of Nuclear Medicine, University Hospital Münster, Münster, Germany
| | - Sven Hermann
- European Institute for Molecular Imaging, University of Münster, Münster, Germany
| | - Sonja Schelhaas
- European Institute for Molecular Imaging, University of Münster, Münster, Germany
| | - Michael Schäfers
- European Institute for Molecular Imaging, University of Münster, Münster, Germany
- Department of Nuclear Medicine, University Hospital Münster, Münster, Germany
| | - Silke Niemann
- Institute of Medical Microbiology, University Hospital Münster, Münster, Germany
| | - Andreas Faust
- European Institute for Molecular Imaging, University of Münster, Münster, Germany
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3
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Abstract
The structural complexity of glycans poses a serious challenge in the chemical synthesis of glycosides, oligosaccharides and glycoconjugates. Glycan complexity, determined by composition, connectivity, and configuration far exceeds what nature achieves with nucleic acids and proteins. Consequently, glycoside synthesis ranks among the most complex tasks in organic synthesis, despite involving only a simple type of bond-forming reaction. Here, we introduce the fundamental principles of glycoside bond formation and summarize recent advances in glycoside bond formation and oligosaccharide synthesis.
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Affiliation(s)
- Conor J Crawford
- Department of Biomolecular Systems, Max Planck Institute for Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany.
| | - Peter H Seeberger
- Department of Biomolecular Systems, Max Planck Institute for Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany.
- Institute for Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
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4
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Ande C, Crich D. Stereodirecting Effect of Esters at the 4-Position of Galacto- and Glucopyranosyl Donors: Effect of 4- C-Methylation on Side-Chain Conformation and Donor Reactivity, and Influence of Concentration and Stoichiometry on Distal Group Participation. J Org Chem 2023; 88:13883-13893. [PMID: 37677151 PMCID: PMC10563135 DOI: 10.1021/acs.joc.3c01496] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Indexed: 09/09/2023]
Abstract
When generated in a mass spectrometer bridged bicyclic 1,3-dioxenium ions derived from 4-O-acylgalactopyranosyl, donors can be observed by infrared spectroscopy at cryogenic temperatures, but they are not seen in the solution phase in contrast to the fused bicyclic 1,3-dioxalenium ions of neighboring group participation. The inclusion of a 4-C-methyl group into a 4-O-benzoyl galactopyranosyl donor enables nuclear magnetic resonance observation of the bicyclic ion arising from participation by the distal ester, with the methyl group influence attributed to ester ground state conformation destabilization. We show that a 4-C-methyl group also influences the side-chain conformation, enforcing a gauche,trans conformation in gluco and galactopyranosides. Competition experiments reveal that the 4-C-methyl group has only a minor influence on the rate of reaction of 4-O-benzoyl or 4-O-benzyl-galacto and glucopyranosyl donors and, consequently, that participation by the distal ester does not result in kinetic acceleration (anchimeric assistance). We demonstrate that the stereoselectivity of the 4-O-benzoyl-4-C-methyl galactopyranosyl donor depends on reaction concentration and additive (diphenyl sulfoxide) stoichiometry and hence that participation by the distal ester is a borderline phenomenon in competition with standard glycosylation mechanisms. An analysis of a recent paper affirming participation by a remote pivalate ester is presented with alternative explanations for the observed phenomena.
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Affiliation(s)
- Chennaiah Ande
- Department
of Pharmaceutical and Biomedical Sciences, University of Georgia, 250 West Green Street, Athens, Georgia 30602, United States
| | - David Crich
- Department
of Pharmaceutical and Biomedical Sciences, University of Georgia, 250 West Green Street, Athens, Georgia 30602, United States
- Department
of Chemistry, University of Georgia, 302 East Campus Road, Athens, Georgia 30602, United States
- Complex
Carbohydrate Research Center, University
of Georgia, 315 Riverbend
Road, Athens, Georgia 30602, United States
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5
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Romanò C, Bengtsson D, Infantino AS, Oscarson S. Synthesis of fluoro- and seleno-containing D-lactose and D-galactose analogues. Org Biomol Chem 2023; 21:2545-2555. [PMID: 36877217 DOI: 10.1039/d2ob02299k] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/03/2023]
Abstract
Synthetic deoxy-fluoro-carbohydrate derivatives and seleno-sugars are useful tools in protein-carbohydrate interaction studies using nuclear magnetic resonance spectroscopy because of the presence of the 19F and 77Se reporter nuclei. Seven saccharides containing both these atoms have been synthesized, three monosaccharides, methyl 6-deoxy-6-fluoro-1-seleno-β-D-galactopyranoside (1) and methyl 2-deoxy-2-fluoro-1-seleno-α/β-D-galactopyranoside (2α and 2β), and four disaccharides, methyl 4-O-(β-D-galactopyranosyl)-2-deoxy-2-fluoro-1-seleno-β-D-glucopyranoside (3), methyl 4-Se-(β-D-galactopyranosyl)-2-deoxy-2-fluoro-4-seleno-β-D-glucopyranoside (4), and methyl 4-Se-(2-deoxy-2-fluoro-α/β-D-galactopyranosyl)-4-seleno-β-D-glucopyranoside (5α and 5β), the three latter compounds with an interglycosidic selenium atom. Selenoglycosides 1 and 3 were obtained from the corresponding bromo sugar by treatment with dimethyl selenide and a reducing agent, while compounds 2α/2β, 4, and 5α/5β were synthesized by the coupling of a D-galactosyl selenolate, obtained in situ from the corresponding isoselenouronium salt, with either methyl iodide or a 4-O-trifluoromethanesulfonyl D-galactosyl moiety. While benzyl ether protecting groups were found to be incompatible with the selenide linkage during deprotection, a change to acetyl esters afforded 4 in a 17% overall yield and over 9 steps from peracetylated D-galactosyl bromide. The synthesis of 5 was performed similarly, but the 2-fluoro substituent led to reduced stereoselectivity in the formation of the isoselenouronium salt (α/β ∼ 1 : 2.3). However, the β-anomer of the uronium salt could be obtained almost pure (∼98%) by precipitation from the reaction mixture. The following displacement reaction occurred without anomerisation, affording, after deacetylation, pure 5β.
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Affiliation(s)
- Cecilia Romanò
- Centre for Synthesis and Chemical Biology, University College Dublin, Belfield, Dublin 4, Ireland.
| | - Dennis Bengtsson
- Centre for Synthesis and Chemical Biology, University College Dublin, Belfield, Dublin 4, Ireland.
| | - Angela Simona Infantino
- Centre for Synthesis and Chemical Biology, University College Dublin, Belfield, Dublin 4, Ireland.
| | - Stefan Oscarson
- Centre for Synthesis and Chemical Biology, University College Dublin, Belfield, Dublin 4, Ireland.
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6
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Upadhyaya K, Osorio-Morales N, Crich D. Can Side-Chain Conformation and Glycosylation Selectivity of Hexopyranosyl Donors Be Controlled with a Dummy Ligand? J Org Chem 2023; 88:3678-3696. [PMID: 36877600 PMCID: PMC10028612 DOI: 10.1021/acs.joc.2c02889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/07/2023]
Abstract
The use of a phenylthio group (SPh) as a dummy ligand at the 6-position to control the side-chain conformation of a series of hexopyranosyl donors is described. The SPh group limits side-chain conformation in a configuration-specific manner, which parallels that seen in the heptopyranosides, and so influences glycosylation selectivity. With both d- and l-glycero-d-galacto-configured donors, the equatorial products are highly favored as they are with an l-glycero-d-gluco donor. For the d-glycero-d-gluco donor, on the other hand, modest axial selectivity is observed. Selectivity patterns are discussed in terms of the side-chain conformation of the donors in combination with the electron-withdrawing effect of the thioacetal group. After glycosylation, removal of the thiophenyl moiety and hydrogenolytic deprotection is achieved in a single step with Raney nickel.
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Affiliation(s)
- Kapil Upadhyaya
- Department of Pharmaceutical and Biomedical Sciences, University of Georgia, 250 West Green Street, Athens, Georgia 30602, United States
| | - Nicolas Osorio-Morales
- Department of Pharmaceutical and Biomedical Sciences, University of Georgia, 250 West Green Street, Athens, Georgia 30602, United States
- Department of Chemistry, University of Georgia, 302 East Campus Road, Athens, Georgia 30602, United States
| | - David Crich
- Department of Pharmaceutical and Biomedical Sciences, University of Georgia, 250 West Green Street, Athens, Georgia 30602, United States
- Department of Chemistry, University of Georgia, 302 East Campus Road, Athens, Georgia 30602, United States
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, Georgia 30602, United States
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7
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P. R, Saif Ali M, Ghosh S, Babu Tatina M. Total Synthesis of
Streptococcus suis
Serotype 8 Capsular Polysaccharide Repeating Unit. ChemistrySelect 2023. [DOI: 10.1002/slct.202300263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/09/2023]
Affiliation(s)
- Ramesh P.
- Department of Organic Synthesis and Process Chemistry CSIR-Indian Institute of Chemical Technology Tarnaka 500007 Hyderabad India
- Academy of Scientific and Innovative Research (AcSIR) 202002 Ghaziabad India
| | - Mohammad Saif Ali
- Department of Organic Synthesis and Process Chemistry CSIR-Indian Institute of Chemical Technology Tarnaka 500007 Hyderabad India
| | - Subhash Ghosh
- Department of Organic Synthesis and Process Chemistry CSIR-Indian Institute of Chemical Technology Tarnaka 500007 Hyderabad India
- Academy of Scientific and Innovative Research (AcSIR) 202002 Ghaziabad India
| | - Madhu Babu Tatina
- Department of Organic Synthesis and Process Chemistry CSIR-Indian Institute of Chemical Technology Tarnaka 500007 Hyderabad India
- Academy of Scientific and Innovative Research (AcSIR) 202002 Ghaziabad India
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8
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Mezö E, Herczeg M, Demeter F, Bereczki I, Csávás M, Borbás A. Systematic Study of Regioselective Reductive Ring-Opening Reactions of 4,6- O-Halobenzylidene Acetals of Glucopyranosides. J Org Chem 2021; 86:12973-12987. [PMID: 34478619 DOI: 10.1021/acs.joc.1c01667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Reductive openings of cyclic acetals are widely used in modern synthetic organic chemistry for the regioselective introduction of protecting groups. A systematic study was performed on the applicability and efficacy of various hydride donor and protic or Lewis acid reagent combinations in the reductive ring opening of glucosidic 4,6-halobenzylidene acetals bearing an ortho-, meta-, and para-chloro- or -bromo substituent on the benzene ring. Most of the reagent combinations tested cleaved the 4,6-O-halobenzylidene acetal rings at O4 or O6 efficiently and with the expected regioselectivity. The LiAlH4-AlCl3 and the BH3·THF-TMSOTf combinations produced the 4-O-halobenzyl ether/6-OH products with complete regioselectivity and high yields. The use of Me3N·BH3-AlCl3 reagent system in toluene was also effective in cleaving the acetal ring at O6 but was accompanied by Al-chelation-assisted debenzylation side reactions. The NaCNBH3-HCl and the Et3SiH-BF3·Et2O combinations were highly effective in yielding the 6-halobenzyl ether/4-OH derivatives. Et3SiH, in combination with TfOH, produced the 6-O-ether/4-OH products in rapid reactions but also triggered silylation and reductive halobenzylation as secondary transformations. Reductive opening of the 1,3-dioxane ring of pyranosidic 4,6-O-halobenzylidene acetals by the proper reagent combination was found to be an efficient method for the regioselective introduction of versatile halobenzyl protecting groups onto the pyranose ring.
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Affiliation(s)
- Erika Mezö
- Department of Pharmaceutical Chemistry, University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary
| | - Mihály Herczeg
- Department of Pharmaceutical Chemistry, University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary.,Research Group for Oligosaccharide Chemistry of Hungarian Academy of Sciences, Egyetem tér 1, H-4032 Debrecen, Hungary
| | - Fruzsina Demeter
- Department of Pharmaceutical Chemistry, University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary
| | - Ilona Bereczki
- Department of Pharmaceutical Chemistry, University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary
| | - Magdolna Csávás
- MTA-DE Molecular Recognition and Interaction Research Group, University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary
| | - Anikó Borbás
- Department of Pharmaceutical Chemistry, University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary
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9
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Kurfiřt M, Lucie ČŠ, Cuřínová P, Hamala V, Karban J. Development of α-Selective Glycosylation for the Synthesis of Deoxyfluorinated TN Antigen Analogues. J Org Chem 2021; 86:5073-5090. [DOI: 10.1021/acs.joc.0c03015] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Martin Kurfiřt
- Institute of Chemical Process Fundamentals of the CAS, v. v. i., Rozvojová 135, 16502 Praha 6, Czech Republic
- University of Chemistry and Technology Prague, Technická 5, 16628 Praha 6, Czech Republic
| | - Červenková Št’astná Lucie
- Institute of Chemical Process Fundamentals of the CAS, v. v. i., Rozvojová 135, 16502 Praha 6, Czech Republic
| | - Petra Cuřínová
- Institute of Chemical Process Fundamentals of the CAS, v. v. i., Rozvojová 135, 16502 Praha 6, Czech Republic
| | - Vojtěch Hamala
- Institute of Chemical Process Fundamentals of the CAS, v. v. i., Rozvojová 135, 16502 Praha 6, Czech Republic
- University of Chemistry and Technology Prague, Technická 5, 16628 Praha 6, Czech Republic
| | - Jindřich Karban
- Institute of Chemical Process Fundamentals of the CAS, v. v. i., Rozvojová 135, 16502 Praha 6, Czech Republic
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10
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Hamala V, Červenková Šťastná L, Kurfiřt M, Cuřínová P, Dračínský M, Karban J. Use of remote acyl groups for stereoselective 1,2-cis-glycosylation with fluorinated glucosazide thiodonors. Org Biomol Chem 2020; 18:5427-5434. [DOI: 10.1039/d0ob01065k] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Introducing remote O-acyl protecting groups enabled 1,2-cis stereoselective glycosylation with fluorinated glucosazide glycosyl donors.
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Affiliation(s)
- Vojtěch Hamala
- Institute of Chemical Process Fundamentals of the CAS
- 16502 Praha 6
- Czech Republic
- University of Chemistry and Technology Prague
- 16628 Praha 6
| | | | - Martin Kurfiřt
- Institute of Chemical Process Fundamentals of the CAS
- 16502 Praha 6
- Czech Republic
- University of Chemistry and Technology Prague
- 16628 Praha 6
| | - Petra Cuřínová
- Institute of Chemical Process Fundamentals of the CAS
- 16502 Praha 6
- Czech Republic
| | - Martin Dračínský
- Institute of Organic Chemistry and Biochemistry of the CAS
- Praha 6
- Czech Republic
| | - Jindřich Karban
- Institute of Chemical Process Fundamentals of the CAS
- 16502 Praha 6
- Czech Republic
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11
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Chen JS, Sankar A, Lin YJ, Huang PH, Liao CH, Wu SS, Wu HR, Luo SY. Phosphotungstic acid as a novel acidic catalyst for carbohydrate protection and glycosylation. RSC Adv 2019; 9:33853-33862. [PMID: 35528919 PMCID: PMC9073715 DOI: 10.1039/c9ra06170c] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Accepted: 10/11/2019] [Indexed: 01/28/2023] Open
Abstract
This work demonstrates the utilization of phosphotungstic acid (PTA) as a novel acidic catalyst for carbohydrate reactions, such as per-O-acetylation, regioselective O-4,6 benzylidene acetal formation, regioselective O-4 ring-opening, and glycosylation. These reactions are basic and salient during the synthesis of carbohydrate-based bioactive oligomers. Phosphotungstic acid's high acidity and eco-friendly character make it a tempting alternative to corrosive homogeneous acids. The various homogenous acid catalysts were replaced by the phosphotungstic acid solely for different carbohydrate reactions. It can be widely used as a catalyst for organic reactions as it is thermally stable and easy to handle. In our work, the reactions are operated smoothly under ambient conditions; the temperature varies from 0 °C to room temperature. Good to excellent yields were obtained in all four kinds of reactions.
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Affiliation(s)
- Jyun-Siao Chen
- Department of Chemistry, National Chung Hsing University Taichung 402 Taiwan
| | - Arumugam Sankar
- Department of Chemistry, National Chung Hsing University Taichung 402 Taiwan
| | - Yi-Jyun Lin
- Department of Chemistry, National Chung Hsing University Taichung 402 Taiwan
| | - Po-Hsun Huang
- Department of Chemistry, National Chung Hsing University Taichung 402 Taiwan
| | - Chih-Hsiang Liao
- Taichung Municipal Feng Yuan Senior High School Taichung 420 Taiwan
| | - Shen-Shen Wu
- National Hsinchu Girls' Senior High School Hsinchu 300 Taiwan
| | - Hsin-Ru Wu
- Instrumentation Center, National Tsing Hua University, MOST Hsinchu 300 Taiwan
| | - Shun-Yuan Luo
- Department of Chemistry, National Chung Hsing University Taichung 402 Taiwan
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12
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Nagatomo M. [Development of Synthetic Strategies for Densely Oxygenated Natural Products: Total Synthesis of Lactacystin and Zaragozic Acid C Using Photochemical C(sp 3)-H Functionalization]. YAKUGAKU ZASSHI 2019; 139:651-661. [PMID: 31061332 DOI: 10.1248/yakushi.18-00210] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
This review describes two novel synthetic routes from (S)-pyroglutaminol to (+)-lactacystin, a potent inhibitor of the 20S proteasome and from d-gluconolactone derivative to zaragozic acid C, a potent squalene synthase inhibitor. In lactacystin synthesis, the photoinduced intermolecular C(sp3)-H alkynylation and intramolecular C(sp3)-H acylation chemoselectively and stereoselectively constructed the tetrasubstituted and trisubstituted carbon centers, respectively. In the synthesis of zaragozic acid C, the stereoselective installation of the two contiguous tetrasubstituted carbons was achieved by the photochemical intramolecular C(sp3)-H acylation of a densely oxygenated intermediate.
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13
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Kurfiřt M, Červenková Št’astná L, Dračínský M, Müllerová M, Hamala V, Cuřínová P, Karban J. Stereoselectivity in Glycosylation with Deoxofluorinated Glucosazide and Galactosazide Thiodonors. J Org Chem 2019; 84:6405-6431. [DOI: 10.1021/acs.joc.9b00705] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Martin Kurfiřt
- Institute of Chemical Process Fundamentals of the CAS, v. v. i, Rozvojová 135, 16502 Praha, Czech Republic
| | - Lucie Červenková Št’astná
- Institute of Chemical Process Fundamentals of the CAS, v. v. i, Rozvojová 135, 16502 Praha, Czech Republic
| | - Martin Dračínský
- Institute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 542/2, 16610 Praha, Czech Republic
| | - Monika Müllerová
- Institute of Chemical Process Fundamentals of the CAS, v. v. i, Rozvojová 135, 16502 Praha, Czech Republic
| | - Vojtěch Hamala
- Institute of Chemical Process Fundamentals of the CAS, v. v. i, Rozvojová 135, 16502 Praha, Czech Republic
| | - Petra Cuřínová
- Institute of Chemical Process Fundamentals of the CAS, v. v. i, Rozvojová 135, 16502 Praha, Czech Republic
| | - Jindřich Karban
- Institute of Chemical Process Fundamentals of the CAS, v. v. i, Rozvojová 135, 16502 Praha, Czech Republic
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14
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Wang T, Demchenko AV. Synthesis of carbohydrate building blocks via regioselective uniform protection/deprotection strategies. Org Biomol Chem 2019; 17:4934-4950. [PMID: 31044205 DOI: 10.1039/c9ob00573k] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Discussed herein is the synthesis of partially protected carbohydrates by manipulating only one type of a protecting group for a given substrate. The first focus of this review is the uniform protection of an unprotected starting material in a way that only one (or two) hydroxyl group remains unprotected. The second focus involves regioselective partial deprotection of uniformly protected compounds in a way that only one (or two) hydroxyl group becomes liberated.
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Affiliation(s)
- Tinghua Wang
- Department of Chemistry and Biochemistry, University of Missouri - St Louis, One University Boulevard, St Louis, Missouri 63121, USA.
| | - Alexei V Demchenko
- Department of Chemistry and Biochemistry, University of Missouri - St Louis, One University Boulevard, St Louis, Missouri 63121, USA.
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15
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Kumar H, Mandal PK. Synthetic routes toward pentasaccharide repeating unit corresponding to the O-antigen of Escherichia coli O181. Tetrahedron Lett 2019. [DOI: 10.1016/j.tetlet.2019.02.027] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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16
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Andersen MCF, Boos I, Kinnaert C, Awan SI, Pedersen HL, Kračun SK, Lanz G, Rydahl MG, Kjærulff L, Håkansson M, Kimbung R, Logan DT, Gotfredsen CH, Willats WGT, Clausen MH. Synthesis of branched and linear 1,4-linked galactan oligosaccharides. Org Biomol Chem 2019; 16:1157-1162. [PMID: 29367995 DOI: 10.1039/c7ob03035e] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
We report the synthesis of linear and branched (1→4)-d-galactans. Four tetrasaccharides and one pentasaccharide were accessed by adopting a procedure of regioselective ring opening of a 4,6-O-naphthylidene protecting group followed by glycosylation using phenyl thioglycoside donors. The binding of the linear pentasaccharide with galectin-3 is also investigated by the determination of a co-crystal structure. The binding of the (1→4)-linked galactan to Gal-3 highlights the oligosaccharides of pectic galactan, which is abundant in the human diet, as putative Gal-3 ligands.
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Affiliation(s)
- Mathias C F Andersen
- Center for Nanomedicine and Theranostics, Department of Chemistry, Technical University of Denmark, Kemitorvet 207, DK-2800, Kgs. Lyngby, Denmark.
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17
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Bradshaw GA, Colgan AC, Allen NP, Pongener I, Boland MB, Ortin Y, McGarrigle EM. Stereoselective organocatalyzed glycosylations - thiouracil, thioureas and monothiophthalimide act as Brønsted acid catalysts at low loadings. Chem Sci 2019; 10:508-514. [PMID: 30713648 PMCID: PMC6334493 DOI: 10.1039/c8sc02788a] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Accepted: 10/15/2018] [Indexed: 01/21/2023] Open
Abstract
Thiouracil catalyzes stereoselective glycosylations with galactals in loadings as low as 0.1 mol%. It is proposed that in these glycosylations thiouracil, monothiophthalimide, and the previously reported catalyst, Schreiner's thiourea, do not operate via a double H-bonding mechanism but rather by Brønsted acid/base catalysis. In addition to the synthesis of 2-deoxyglycosides and glycoconjugates, we report the first organocatalytic synthesis of 1,1'-linked trehalose-type sugars.
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Affiliation(s)
- G A Bradshaw
- Centre for Synthesis & Chemical Biology , UCD School of Chemistry , University College Dublin , Belfield , Dublin 4 , Ireland .
| | - A C Colgan
- Centre for Synthesis & Chemical Biology , UCD School of Chemistry , University College Dublin , Belfield , Dublin 4 , Ireland .
| | - N P Allen
- Centre for Synthesis & Chemical Biology , UCD School of Chemistry , University College Dublin , Belfield , Dublin 4 , Ireland .
| | - I Pongener
- Centre for Synthesis & Chemical Biology , UCD School of Chemistry , University College Dublin , Belfield , Dublin 4 , Ireland .
| | - M B Boland
- Centre for Synthesis & Chemical Biology , UCD School of Chemistry , University College Dublin , Belfield , Dublin 4 , Ireland .
| | - Y Ortin
- Centre for Synthesis & Chemical Biology , UCD School of Chemistry , University College Dublin , Belfield , Dublin 4 , Ireland .
| | - E M McGarrigle
- Centre for Synthesis & Chemical Biology , UCD School of Chemistry , University College Dublin , Belfield , Dublin 4 , Ireland .
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18
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Janssens J, Risseeuw MDP, Van der Eycken J, Van Calenbergh S. Regioselective Ring Opening of 1,3-Dioxane-Type Acetals in Carbohydrates. European J Org Chem 2018. [DOI: 10.1002/ejoc.201801245] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Jonas Janssens
- Laboratory for Medicinal Chemistry; Department of Pharmaceutics (FFW); Ghent University; Ottergemsesteenweg 460 9000 Ghent Belgium
- Laboratory for Organic and Bioorganic Synthesis; Department of Organic and Macromolecular Chemistry; Ghent University; Krijgslaan 281 (S4) 9000 Ghent Belgium
| | - Martijn D. P. Risseeuw
- Laboratory for Medicinal Chemistry; Department of Pharmaceutics (FFW); Ghent University; Ottergemsesteenweg 460 9000 Ghent Belgium
| | - Johan Van der Eycken
- Laboratory for Organic and Bioorganic Synthesis; Department of Organic and Macromolecular Chemistry; Ghent University; Krijgslaan 281 (S4) 9000 Ghent Belgium
| | - Serge Van Calenbergh
- Laboratory for Medicinal Chemistry; Department of Pharmaceutics (FFW); Ghent University; Ottergemsesteenweg 460 9000 Ghent Belgium
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19
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Kulkarni SS, Wang CC, Sabbavarapu NM, Podilapu AR, Liao PH, Hung SC. "One-Pot" Protection, Glycosylation, and Protection-Glycosylation Strategies of Carbohydrates. Chem Rev 2018; 118:8025-8104. [PMID: 29870239 DOI: 10.1021/acs.chemrev.8b00036] [Citation(s) in RCA: 202] [Impact Index Per Article: 33.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Carbohydrates, which are ubiquitously distributed throughout the three domains of life, play significant roles in a variety of vital biological processes. Access to unique and homogeneous carbohydrate materials is important to understand their physical properties, biological functions, and disease-related features. It is difficult to isolate carbohydrates in acceptable purity and amounts from natural sources. Therefore, complex saccharides with well-defined structures are often most conviently accessed through chemical syntheses. Two major hurdles, regioselective protection and stereoselective glycosylation, are faced by carbohydrate chemists in synthesizing these highly complicated molecules. Over the past few years, there has been a radical change in tackling these problems and speeding up the synthesis of oligosaccharides. This is largely due to the development of one-pot protection, one-pot glycosylation, and one-pot protection-glycosylation protocols and streamlined approaches to orthogonally protected building blocks, including those from rare sugars, that can be used in glycan coupling. In addition, new automated strategies for oligosaccharide syntheses have been reported not only for program-controlled assembly on solid support but also by the stepwise glycosylation in solution phase. As a result, various sugar molecules with highly complex, large structures could be successfully synthesized. To summarize these recent advances, this review describes the methodologies for one-pot protection and their one-pot glycosylation into the complex glycans and the chronological developments associated with automated syntheses of oligosaccharides.
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Affiliation(s)
- Suvarn S Kulkarni
- Department of Chemistry , Indian Institute of Technology Bombay , Mumbai 400076 , India
| | | | | | - Ananda Rao Podilapu
- Department of Chemistry , Indian Institute of Technology Bombay , Mumbai 400076 , India
| | - Pin-Hsuan Liao
- Institute of Chemistry , Academia Sinica , Taipei 115 , Taiwan
| | - Shang-Cheng Hung
- Genomics Research Center , Academia Sinica , Taipei 115 , Taiwan
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20
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Singh PK, Silakari O. The Current Status of O-Heterocycles: A Synthetic and Medicinal Overview. ChemMedChem 2018; 13:1071-1087. [PMID: 29603634 DOI: 10.1002/cmdc.201800119] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2018] [Revised: 03/23/2018] [Indexed: 12/20/2022]
Abstract
O-Heterocycles have been explored in the field of medicinal chemistry for a long time, but their significance has not been duly recognised and they are often shunned in favour of N-heterocycles. The design of bioactive molecules for nearly every pathophysiological condition is primarily focused on novel N-heterocycles. The main reasons for such bias include the ease of synthesis and possible mimicking of physiological molecules by N-heterocycles. But considering only this criterion rarely provides breakthrough molecules for a given disease condition, and instead the risks of toxicity or side effects are increased with such molecules. On the other hand, owing to improved synthetic feasibility, O-heterocycles have established themselves as equally potent lead molecules for a wide range of pathophysiological conditions. In the last decade there have been hundreds of reports validating the fact that equally potent molecules can be designed and developed by using O-heterocycles, and these are also expected to have comparably low toxicity. Even so, researchers tend to remain biased toward the use of N-heterocycles over O-heterocycles. Thus, this review provides a critical analysis of the synthesis and medicinal attributes of O-heterocycles, such as pyrones, oxazolones, furanones, oxetanes, oxazolidinones, and dioxolonones, and others, reported in the last five years, underlining the need for and the advantages guiding researchers toward them.
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Affiliation(s)
- Pankaj Kumar Singh
- Molecular Modelling Lab (MML), Department of Pharmaceutical Sciences and Drug Research, Punjabi University, Patiala, Punjab, 147002, India
| | - Om Silakari
- Molecular Modelling Lab (MML), Department of Pharmaceutical Sciences and Drug Research, Punjabi University, Patiala, Punjab, 147002, India
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21
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Amarasekara H, Dharuman S, Kato T, Crich D. Synthesis of Conformationally-Locked cis- and trans-Bicyclo[4.4.0] Mono-, Di-, and Trioxadecane Modifications of Galacto- and Glucopyranose; Experimental Limiting 3J H,H Coupling Constants for the Estimation of Carbohydrate Side Chain Populations and Beyond. J Org Chem 2018; 83:881-897. [PMID: 29241001 PMCID: PMC5775050 DOI: 10.1021/acs.joc.7b02891] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Hexopyranose side chains populate three staggered conformations, whose proportions can be determined from the three sets of ideal limiting 3JH5,H6R and 3JH5,H6S coupling constants in combination with the time-averaged experimental coupling constants. Literature values for the limiting coupling constants, obtained by the study of model compounds, the use of the Haasnoot-Altona and related equations, or quantum mechanical computations, can result in computed negative populations of one of the three ideal conformations. Such values arise from errors in the limiting coupling constants and/or from the population of nonideal conformers. We describe the synthesis and analysis of a series of cis- and trans-fused mono-, di-, and trioxabicyclo[4.4.0]octane-like compounds. Correction factors for the application of data from internal models (-CH(OR)-CH(OR)-) to terminal systems (-CH(OR)-CH2(OR)) are deduced from comparison of further models, and applied where necessary. Limiting coupling constants so-derived are applied to the side chain conformations of three model hexopyranosides, resulting in calculated conformer populations without negative values. Although, developed primarily for hexopyranose side chains, the limiting coupling constants are suitable, with the correction factors presented, for application to the side chains of higher carbon sugars and to conformation analysis of acyclic diols and their derivatives in a more general sense.
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Affiliation(s)
- Harsha Amarasekara
- Department of Chemistry, Wayne State University , Detroit, Michigan 48202, United States
| | - Suresh Dharuman
- Department of Chemistry, Wayne State University , Detroit, Michigan 48202, United States
| | - Takayuki Kato
- Department of Chemistry, Wayne State University , Detroit, Michigan 48202, United States
| | - David Crich
- Department of Chemistry, Wayne State University , Detroit, Michigan 48202, United States
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22
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Kawamata T, Nagatomo M, Inoue M. Total Synthesis of Zaragozic Acid C: Implementation of Photochemical C(sp3)–H Acylation. J Am Chem Soc 2017; 139:1814-1817. [DOI: 10.1021/jacs.6b13263] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Takahiro Kawamata
- Graduate School of Pharmaceutical
Sciences, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Masanori Nagatomo
- Graduate School of Pharmaceutical
Sciences, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Masayuki Inoue
- Graduate School of Pharmaceutical
Sciences, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
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23
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Andersen MC, Boos I, Marcus SE, Kračun SK, Rydahl MG, Willats WG, Knox JP, Clausen MH. Characterization of the LM5 pectic galactan epitope with synthetic analogues of β-1,4-d-galactotetraose. Carbohydr Res 2016; 436:36-40. [DOI: 10.1016/j.carres.2016.10.012] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2016] [Revised: 10/26/2016] [Accepted: 10/27/2016] [Indexed: 10/20/2022]
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24
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Dhakal B, Buda S, Crich D. Stereoselective Synthesis of 5-epi-α-Sialosides Related to the Pseudaminic Acid Glycosides. Reassessment of the Stereoselectivity of the 5-Azido-5-deacetamidosialyl Thioglycosides and Use of Triflate as Nucleophile in the Zbiral Deamination of Sialic Acids. J Org Chem 2016; 81:10617-10630. [PMID: 27806203 PMCID: PMC5148678 DOI: 10.1021/acs.joc.6b02221] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
With a view to the eventual synthesis of glycosyl donors for the stereocontrolled synthesis of pseudaminic acid glycosides, the stereocontrolled synthesis of a d-glycero-d-gulo sialic acid adamantanylthioglycoside carrying an axial azide at the 5-position is described. The synthesis employs levulinic acid as nucleophile in the oxidative deamination of an N-acetylneuraminic acid thioglycoside leading to the formation of a 3-deoxy-d-glycero-d-galacto-2-nonulosonic acid (KDN) derivative selectively protected as 5-O-levulinate. Replacement of the levulinate by triflate enables introduction of the axial azide and hence formation of the glycosyl donor. A shorter synthesis uses trifluoromethanesulfonate as nucleophile in the oxidative deamination step when the 5-O-triflyl KDN derivative is obtained directly. Glycosylation reactions conducted with the 5-azido-d-glycero-d-gulo-configured sialyl adamantanylthioglycoside at -78 °C are selective for the formation of the equatorial glycosides, suggesting that the synthesis of equatorial pseudaminic acid glycosides will be possible as suitable donors become available. A comparable N-acetylneuraminic acid adamantanylthioglycoside carrying an equatorial azide at the 5-position was also found to be selective for equatorial glycoside formation under the same conditions, suggesting that reinvestigation of other azide-protected NeuAc donors is merited. Glycosylation stereoselectivity in the d-glycero-d-gulo series is discussed in terms of the side-chain conformation of the donor.
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Affiliation(s)
- Bibek Dhakal
- Department of Chemistry, Wayne State University, Detroit, MI 48202, USA
| | - Szymon Buda
- Department of Chemistry, Wayne State University, Detroit, MI 48202, USA
| | - David Crich
- Department of Chemistry, Wayne State University, Detroit, MI 48202, USA
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25
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Highly regioselective homoallyl alcohol protection through ring opening of p-methoxybenzylidene acetal. Tetrahedron Lett 2016. [DOI: 10.1016/j.tetlet.2016.10.068] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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26
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27
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Guazzelli L, McCabe O, Oscarson S. Synthesis of part structures of Cryptococcus neoformans serotype C capsular polysaccharide. Carbohydr Res 2016; 433:5-13. [PMID: 27423877 DOI: 10.1016/j.carres.2016.06.012] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2016] [Revised: 06/27/2016] [Accepted: 06/28/2016] [Indexed: 11/19/2022]
Abstract
Cryptococcus neoformans is a fungal pathogen that can cause life-threatening infections in immunocompromised patients. The development of a vaccine based on the capsular polysaccharide of C. neoformans is still an open challenge due to the heterogeneity of the capsular polysaccharide and the difficulty of identifying protective epitopes. Therefore, construction of structurally defined part structures of the C. neoformans GXM capsule is in great demand. Herein is presented the synthesis of a 3-O-naphthalenylmethyl protected trisaccharide thioglycoside building block which is present in C. neoformans serotype C polysaccharide. Its property as a donor in a glycosylation reaction with a model acceptor has been evaluated together with its behaviour as an acceptor following removal of the temporary protecting group. The heavily branched hexasaccharide was obtained in good yields and excellent α-selectivity. The frame shifted octasaccharide structural triad motif for serotype C was also prepared following the same building block strategy. For the first time this structural motif, which is the most substituted amongst the four C. neoformans serotypes, was prepared. Three synthesized C. neoformans serotype C fragments of varying size, from penta-up to octasaccharide, were deprotected and will be included in unique glycoarrays to further investigate the possibility to develop a synthetic vaccine against this pathogen.
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Affiliation(s)
- Lorenzo Guazzelli
- School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland.
| | - Orla McCabe
- School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Stefan Oscarson
- School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
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28
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An efficient synthesis and regioselective hydrogenolysis of dioxolane-type of carbohydrates. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.04.068] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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29
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Santra A, Ghosh T, Misra AK. Synthesis of Di- and Trisaccharides Related to the O-Polysaccharide of Shigella dysenteriae Type 8. J Carbohydr Chem 2015. [DOI: 10.1080/07328303.2015.1108424] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Abhishek Santra
- Bose Institute, Division of Molecular Medicine, P-1/12, C.I.T. Scheme VII-M, Kolkata-700054, India
| | - Tamashree Ghosh
- Bose Institute, Division of Molecular Medicine, P-1/12, C.I.T. Scheme VII-M, Kolkata-700054, India
| | - Anup Kumar Misra
- Bose Institute, Division of Molecular Medicine, P-1/12, C.I.T. Scheme VII-M, Kolkata-700054, India
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30
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Soliman SE, Kováč P. Synthesis of a Conjugation-Ready, Phosphorylated, Tetrasaccharide Fragment of the O-PS of Vibrio cholerae O139. J Org Chem 2015; 80:11227-32. [DOI: 10.1021/acs.joc.5b02105] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sameh E. Soliman
- NIDDK,
LBC, Section on Carbohydrates, National Institutes of Health, Bethesda, Maryland 20892-0815, United States
- Department
of Chemistry, Faculty of Science, Alexandria University, Alexandria 21321, Egypt
| | - Pavol Kováč
- NIDDK,
LBC, Section on Carbohydrates, National Institutes of Health, Bethesda, Maryland 20892-0815, United States
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31
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Kato T, Yang G, Teo Y, Juskeviciene R, Perez-Fernandez D, Shinde HM, Salian S, Bernet B, Vasella A, Böttger EC, Crich D. Synthesis and Antiribosomal Activities of 4'-O-, 6'-O-, 4″-O-, 4',6'-O- and 4″,6″-O-Derivatives in the Kanamycin Series Indicate Differing Target Selectivity Patterns between the 4,5- and 4,6-Series of Disubstituted 2-Deoxystreptamine Aminoglycoside Antibiotics. ACS Infect Dis 2015; 1:479-86. [PMID: 27623314 DOI: 10.1021/acsinfecdis.5b00069] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Chemistry for the efficient modification of the kanamycin class of 4,6-aminoglycosides at the 4'-position is presented. In all kanamycins but kanamycin B, 4'-O-alkylation is strongly detrimental to antiribosomal and antibacterial activity. Ethylation of kanamycin B at the 4″-position entails little loss of antiribosomal and antibacterial activity, but no increase of ribosomal selectivity. These results are contrasted with those for the 4,5-aminoglycosides, where 4'-O-alkylation of paromomycin causes only a minimal loss of activity but results in a significant increase in selectivity with a concomitant loss of ototoxicity.
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Affiliation(s)
- Takayuki Kato
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - Guanyu Yang
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - Youjin Teo
- Institut für Medizinische Mikrobiologie, Universität Zürich, 8006 Zürich, Switzerland
| | - Reda Juskeviciene
- Institut für Medizinische Mikrobiologie, Universität Zürich, 8006 Zürich, Switzerland
| | | | - Harish M. Shinde
- Laboratorium für Organische Chemie, ETH Zürich, 8093 Zürich, Switzerland
| | - Sumanth Salian
- Laboratorium für Organische Chemie, ETH Zürich, 8093 Zürich, Switzerland
| | - Bruno Bernet
- Laboratorium für Organische Chemie, ETH Zürich, 8093 Zürich, Switzerland
| | - Andrea Vasella
- Laboratorium für Organische Chemie, ETH Zürich, 8093 Zürich, Switzerland
| | - Erik C. Böttger
- Institut für Medizinische Mikrobiologie, Universität Zürich, 8006 Zürich, Switzerland
| | - David Crich
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
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32
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Guazzelli L, Ulc R, Oscarson S. Synthesis of a Glucuronic Acid-Containing Thioglycoside Trisaccharide Building Block and Its Use in the Assembly of Cryptococcus Neoformans Capsular Polysaccharide Fragments. ChemistryOpen 2015; 4:729-39. [PMID: 27308199 PMCID: PMC4906494 DOI: 10.1002/open.201500143] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2015] [Indexed: 11/27/2022] Open
Abstract
As part of an ongoing project aimed at identifying protective capsular polysaccharide epitopes for the development of vaccine candidates against the fungal pathogen Cryptococcus neoformans, the synthesis and glycosylation properties of a naphthalenylmethyl (NAP) orthogonally protected trisaccharide thioglycoside, a common building block for construction of serotype B and C capsular polysaccharide structures, were investigated. Ethyl (benzyl 2,3,4‐tri‐O‐benzyl‐β‐d‐glucopyranosyl‐ uronate)‐(1→2)‐[2,3,4‐tri‐O‐benzyl‐β‐d‐xylopyranosyl‐(1→4)]‐6‐O‐benzyl‐3‐O‐(2‐naphthalenylmethyl)‐1‐thio‐α‐d‐mannopyranoside was prepared and used both as a donor and an acceptor in glycosylation reactions to obtain spacer equipped hexa‐ and heptasaccharide structures suitable either for continued elongation or for deprotection and printing onto a glycan array or conjugation to a carrier protein. The glycosylation reactions proceeded with high yields and α‐selectivity, proving the viability of the building block approach also for construction of 4‐O‐xylosyl‐containing C. neoformans CPS structures.
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Affiliation(s)
- Lorenzo Guazzelli
- School of Chemistry and Chemical Biology University College Dublin Belfield 4 Dublin Ireland
| | - Rebecca Ulc
- School of Chemistry and Chemical Biology University College Dublin Belfield 4 Dublin Ireland
| | - Stefan Oscarson
- School of Chemistry and Chemical Biology University College Dublin Belfield 4 Dublin Ireland
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33
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Soliman SE, Kováč P. Stereoselective Syntheses of the Conjugation-Ready, Downstream Disaccharide and Phosphorylated Upstream, Branched Trisaccharide Fragments of the O-PS of Vibrio cholerae O139. J Org Chem 2015; 80:4851-60. [DOI: 10.1021/acs.joc.5b00562] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sameh E. Soliman
- NIDDK,
LBC, Section on Carbohydrates, National Institutes of Health, Bethesda, Maryland 20892-0815, United States
- Department
of Chemistry, Faculty of Science, Alexandria University, Alexandria 21321, Egypt
| | - Pavol Kováč
- NIDDK,
LBC, Section on Carbohydrates, National Institutes of Health, Bethesda, Maryland 20892-0815, United States
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34
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Mandal PK. Synthesis of the pentasaccharide repeating unit of the O-antigen of E. coli O117:K98:H4. Beilstein J Org Chem 2014; 10:2724-8. [PMID: 25550736 PMCID: PMC4273275 DOI: 10.3762/bjoc.10.287] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2014] [Accepted: 11/06/2014] [Indexed: 11/24/2022] Open
Abstract
The pentasaccharide repeating unit of the O-antigen of E. coli O117:K98:H4 strain has been synthesized using a combination of sequential glycosylations and [3 + 2] block synthetic strategy from the suitably protected monosaccharide intermediates. Thioglycosides and glycosyl trichloroacetimidate derivatives have been used as glycosyl donors in the glycosylations.
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Affiliation(s)
- Pintu Kumar Mandal
- Medicinal and Process Chemistry Division, CSIR-Central Drug Research Institute, BS-10/1, Sector 10, Jankipuram extension, Sitapur Road, Lucknow, 226 031, India
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35
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Kurimoto K, Yamamura H, Miyagawa A. Chemical approach for the syntheses of GM4 isomers with sialic acid to non-natural linkage positions on galactose. Carbohydr Res 2014; 401:39-50. [PMID: 25464080 DOI: 10.1016/j.carres.2014.10.018] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2014] [Revised: 10/21/2014] [Accepted: 10/21/2014] [Indexed: 10/24/2022]
Abstract
Cell-surface glycans containing sialic acid are involved in various biological phenomena. However, the syntheses of GM4 derivatives with (2 → 2) and (2 → 4) linkages have not been investigated to date. In this study, sialylation of all of the hydroxyl groups on galactose were investigated for the syntheses of GM4 isomers. Regioselective sialylation was achieved via protection of galactosyl acceptors using electron-rich benzyl groups. These synthetic sialylated glycans will prove to be useful tools for studying unidentified carbohydrate-mediated biological roles.
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Affiliation(s)
- Kenta Kurimoto
- Graduate School of Engineering, Nagoya Institute of Technology, Gokiso-cho, Showa-ku, Nagoya 466-8555, Japan
| | - Hatsuo Yamamura
- Graduate School of Engineering, Nagoya Institute of Technology, Gokiso-cho, Showa-ku, Nagoya 466-8555, Japan
| | - Atsushi Miyagawa
- Graduate School of Engineering, Nagoya Institute of Technology, Gokiso-cho, Showa-ku, Nagoya 466-8555, Japan.
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36
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Catalytic enantioselective diversity-oriented synthesis of a small library of polyhydroxylated pyrans inspired from thiomarinol antibiotics. Mol Divers 2014; 18:701-19. [DOI: 10.1007/s11030-014-9542-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2014] [Accepted: 07/30/2014] [Indexed: 10/24/2022]
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37
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Dara S, Saikam V, Yadav M, Singh PP, Vishwakarma RA. HClO4–silica-catalysed regioselective opening of benzylidene acetals and its application towards regioselective HO-4 glycosylation of benzylidene acetals in one-pot. Carbohydr Res 2014; 391:93-6. [DOI: 10.1016/j.carres.2014.01.011] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2013] [Revised: 01/11/2014] [Accepted: 01/13/2014] [Indexed: 12/01/2022]
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38
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Yokoyama H, Hirai Y, Kusumoto Y, Sumiyoshi K, Miyazawa M. Synthetic Studies of Yessotoxin: Iterative Synthesis of the AB Ring System via Pd(II)-Catalyzed Cyclization of Alcohol. HETEROCYCLES 2014. [DOI: 10.3987/com-13-12892] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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39
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Shie CR, Tzeng ZH, Wang CC, Hung SC. Metal Trifluoromethanesulfonate-Catalyzed Regioselective Reductive Ring Opening of Benzylidene Acetals. J CHIN CHEM SOC-TAIP 2013. [DOI: 10.1002/jccs.200900076] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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40
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Sau A, Dhara D, Misra AK. Concise synthesis of a pentasaccharide repeating unit corresponding to the O-antigen of Escherichia coli O102. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/j.tetasy.2013.06.005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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41
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Das R, Mukhopadhyay B. Chemical synthesis of the tetrasaccharide repeating unit of the O-antigenic polysaccharide from Plesiomonas shigelloides strain AM36565. Carbohydr Res 2013; 376:1-6. [DOI: 10.1016/j.carres.2013.04.033] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2013] [Revised: 04/22/2013] [Accepted: 04/30/2013] [Indexed: 11/30/2022]
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42
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Koizumi A, Matsuo I, Takatani M, Seko A, Hachisu M, Takeda Y, Ito Y. Top-Down Chemoenzymatic Approach to a High-Mannose-Type Glycan Library: Synthesis of a Common Precursor and Its Enzymatic Trimming. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201301613] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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43
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Koizumi A, Matsuo I, Takatani M, Seko A, Hachisu M, Takeda Y, Ito Y. Top-Down Chemoenzymatic Approach to a High-Mannose-Type Glycan Library: Synthesis of a Common Precursor and Its Enzymatic Trimming. Angew Chem Int Ed Engl 2013; 52:7426-31. [DOI: 10.1002/anie.201301613] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2013] [Revised: 05/01/2013] [Indexed: 01/20/2023]
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44
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Liu L, Pohl NLB. Synthesis of a series of maltotriose phosphates with an evaluation of the utility of a fluorous phosphate protecting group. Carbohydr Res 2013; 369:14-24. [PMID: 23376679 DOI: 10.1016/j.carres.2012.12.015] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2012] [Revised: 12/13/2012] [Accepted: 12/15/2012] [Indexed: 01/21/2023]
Abstract
A series of methyl maltotrioside phosphates were synthesized for application in the determination of the actual molecular substrate of the Lafora enzyme involved in Lafora disease. Several different synthetic routes were applied for the successful synthesis of six methyl maltotrioside phosphate regioisomers. The utility of a new fluorous phosphate protecting group was also evaluated, but its utility was found to be limited in this particular late stage introduction.
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Affiliation(s)
- Lin Liu
- Department of Chemistry, Department of Chemical and Biological Engineering, and the Plant Sciences Institute, Hach Hall, Iowa State University, Ames, IA 50011-3111, USA
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45
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Muñoz-García JC, López-Prados J, Angulo J, Díaz-Contreras I, Reichardt N, de Paz JL, Martín-Lomas M, Nieto PM. Effect of the substituents of the neighboring ring in the conformational equilibrium of iduronate in heparin-like trisaccharides. Chemistry 2012; 18:16319-31. [PMID: 23143902 DOI: 10.1002/chem.201202770] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2012] [Indexed: 12/22/2022]
Abstract
Based on the structure of the regular heparin, we have prepared a smart library of heparin-like trisaccharides by incorporating some sulfate groups in the sequence α-D-GlcNS- (1-4)-α-L-Ido2S-(1-4)-α-D-GlcN. According to the 3D structure of heparin, which features one helix turn every four residues, this fragment corresponds to the minimum binding motif. We have performed a complete NMR study and found that the trisaccharides have a similar 3D structure to regular heparin itself, but their spectral properties are such that allow to extract very detailed information about distances and coupling constants as they are isotropic molecules. The characteristic conformational equilibrium of the central iduronate ring has been analyzed combining NMR and molecular dynamics and the populations of the conformers of the central iduronate ring have been calculated. We have found that in those compounds lacking the sulfate group at position 6 of the reducing end glucosamine, the population of (2)S(0) of the central iduronate residue is sensitive to the temperature decreasing to 19% at 278 K. On the contrary, the trisaccharides with 6-O-sulfate in the reducing end glucosamine keep the level of population constant with temperature circa 40% of (2)S(0) similar to that observed at room temperature. Another structural feature that has been revealed through this analysis is the larger flexibility of the L-IdoAS- D-GlcN glycosidic linkage, compared with the D-GlcNS-L-IdoA. We propose that this is the point where the heparin chain is bended to form structures far from the regular helix known as kink that have been proposed to play an important role in the specificity of the heparin-protein interaction.
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Affiliation(s)
- Juan Carlos Muñoz-García
- Glycosystems Laboratory, Instituto de Investigaciones Quimicas, CSIC-US, Americo Vespucio, 49, 41092 Sevilla, Spain
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46
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47
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Crich D. Methodology development and physical organic chemistry: a powerful combination for the advancement of glycochemistry. J Org Chem 2011; 76:9193-209. [PMID: 21919522 PMCID: PMC3215858 DOI: 10.1021/jo2017026] [Citation(s) in RCA: 98] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
This Perspective outlines work in the Crich group on the diastereoselective synthesis of the so-called difficult classes of glycosidic bond: the 2-deoxy-β-glycopyranosides, the β-mannopyranosides, the α-sialosides, the α-glucopyranosides, and the β-arabinofuranosides with an emphasis on the critical interplay between mechanism and methodology development.
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Affiliation(s)
- David Crich
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, USA.
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48
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Dettmann R, Ziegler T. Synthesis of octyl S-glycosides of tri- to pentasaccharide fragments related to the GPI anchor of Trypanosoma brucei. Carbohydr Res 2011; 346:2348-61. [PMID: 21920515 DOI: 10.1016/j.carres.2011.08.001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2011] [Revised: 06/21/2011] [Accepted: 08/02/2011] [Indexed: 10/17/2022]
Abstract
The three oligosaccharide octyl-S-glycosides Man-α1,6-Man-α1,4-GlcNH(2)-α1,S-Octyl (19), Man-α1,6-(Gal-α1,3)Man-α1,4-GlcNH(2)-α1,S-Octyl (27) and Man-α1,2-Man-α1,6-(Gal-α1,3)Man-α1,4-GlcNH(2)-α1,S-Octyl (37), related to the GPI anchor of Trypanosoma brucei were prepared by a stepwise and block-wise approach from octyl 2-azido-2-deoxy-3,6-di-O-benzyl-1-thio-α-D-glucopyranoside (8) and octyl 2-O-benzoyl-4,6-O-(1,1,3,3-tetraisopropyl-1,3-disiloxane-1,3-diyl)-1-thio-α-D-mannopyransoside (9). Glucosamine derivative 8 was obtained from 1,3,4,6-tetra-O-acetyl-2-azido-2-desoxy-β-D-glucopyranose (1) in five steps. Mannoside 9 was converted into the corresponding imidate 12 and coupled with 8 to give disaccharide octyl-S-glycoside 13 which was further mannosylated to afford trisaccharide 19 upon deprotection. Likewise, mannoside 9 was galactosylated, converted into the corresponding imidate and coupled with 8 to give trisaccharide 25. Mannosylation of the latter afforded tetrasaccharide 27 upon deprotection. Condensation of 25 with disaccharide imidate 35 gave, upon deprotection of the intermediates, the corresponding pentasaccharide octyl-S-glycoside 37. Saccharides 19, 27 and 37 are suitable substrates for studying the enzymatic glycosylation pattern of the GPI anchor of T. brucei.
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Affiliation(s)
- Ralf Dettmann
- Institute of Organic Chemistry, University of Tuebingen, Auf der Morgenstelle 18, 72076 Tuebingen, Germany
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49
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Ohlin M, Johnsson R, Ellervik U. Regioselective reductive openings of 4,6-benzylidene acetals: synthetic and mechanistic aspects. Carbohydr Res 2011; 346:1358-70. [DOI: 10.1016/j.carres.2011.03.032] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2011] [Accepted: 03/22/2011] [Indexed: 11/24/2022]
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50
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Matwiejuk M, Thiem J. New Method for Regioselective Glycosylation Employing Saccharide Oxyanions. European J Org Chem 2011. [DOI: 10.1002/ejoc.201100861] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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