Kinetics of phenol and chlorophenol utilization by Acinetobacter species

Evaluation of the mechanisms underlying altered fatty acid biosynthesis in heterotrophic microalgal strain Chlorella sorokiniana during biodegradation of phenol and p-nitrophenol

Phenolic compounds have become a severe environmental concern due to water contamination, affecting the sustainability of the ecosystem. The microalgae enzymes have enticed for the efficient involvement in the biodegradation of phenolics compound in metabolic processes. In this investigation, the oleaginous microalgae Chlorella sorokiniana was cultured heterotrophically under the influence of phenol and p-nitrophenol. The enzymatic assays of algal cell extracts were used to decipher the underlying mechanisms for phenol and p-nitrophenol biodegradation. A reduction of 99.58% and 97.21% in phenol and p-nitrophenol values, respectively, was recorded after the 10th day of microalgae cultivation. Also, the biochemical components in phenol, p-nitrophenol, and control were found to be 39.6 ± 2.3%, 36.7 ± 1.3%, and 30.9 ± 1.8% (total lipids); 27.4 ± 1.4%, 28.3 ± 1.8%, and 19.7 ± 1.5% (total carbohydrates); and 26.7 ± 1.9%, 28.3 ± 1.9%, and 39.9 ± 1.2% (total proteins), respectively. The GC-MS and 1H-NMR spectroscopy attested the incidence of fatty acid methyl esters in the synthesized microalgal biodiesel. The activity of catechol 2,3-dioxygenase and hydroquinone 1,2-dioxygenase in microalgae under heterotrophic conditions has conferred the ortho- and hydroquinone pathways for phenol and p-nitrophenol biodegradation, respectively. Also, the acceleration of fatty acid profiles in microalgae is deliberated under the impact of the phenol and p-nitrophenol biodegradation process. Thus, microalgae enzymes in the metabolic degradation process of phenolic compounds encourage ecosystem sustainability and biodiesel prospects due to the increased lipid profiles of microalgae.

A synergistic platform enables co-oxidation of halogenated organic pollutants without input of organic primary substrate

While co-oxidation is widely used to biodegrade halogenated organic pollutants (HOPs), a considerable amount of organic primary substrate is required. Adding organic primary substrates increases the operating cost and also leads to extra carbon dioxide release. In this study, we evaluated a two-stage Reduction and Oxidation Synergistic Platform (ROSP), which integrated catalytic reductive dehalogenation with biological co-oxidation for HOPs removal. The ROSP was a combination of an H₂-based membrane catalytic-film reactor (H_2-MCfR) and an O₂-based membrane biofilm reactor (O_2-MBfR). 4-chlorophenol (4-CP) was used as a model HOP to evaluate the performance of ROSP. In the MCfR stage, zero-valent palladium nanoparticles (Pd⁰NPs) catalyzed reductive hydrodechlorination that converted 4-CP to phenol, with a conversion yield over 92%. In the MBfR stage, the phenol was oxidized and used as a primary substrate that supported the co-oxidation of residual 4-CP. Genomic DNA sequencing revealed that phenol produced from 4-CP reduction enriched bacteria having genes for functional enzymes for phenol biodegradation in the biofilm community. In the ROSP, over 99% of 60 mg/L 4-CP was removed and mineralized during continuous operation: Effluent 4-CP and chemical oxygen demand concentrations were below 0.1 and 3 mg/L, respectively. H₂ was the only added electron donor to the ROSP, which means no extra carbon dioxide was produced by primary-substrate oxidation.

Kinetic characterization of a new phenol degrading Acinetobacter towneri strain isolated from landfill leachate treating bioreactor

The objective of this study was to establish and to mathematically describe the phenol degrading properties of a new Acinetobacter towneri CFII-87 strain, isolated from a bioreactor treating landfill leachate. For this purpose, the biokinetic parameters of phenol biodegradation at various initial phenol concentrations of the A. towneri CFII-87 strain have been experimentally measured, and four different mathematical inhibition models (Haldane, Yano, Aiba and Edwards models) have been used to simulate the substrate-inhibited phenol degradation process. The results of the batch biodegradation experiments show that the new A. towneri CFII-87 strain grows on and metabolizes phenol up to 1000 mg/L concentration, manifests significant substrate inhibition and lag time only at concentrations above 800 mg/L phenol, and has a maximum growth rate at 300 mg/L initial phenol concentration. The comparison of the model predictions with the experimental phenol and biomass data revealed that the Haldane, Aiba and Edwards models can be used with success to describe the phenol biodegradation process by A. towneri CFII-87, while the Yano model, especially at higher initial phenol concentrations, fails to describe the process. The best performing inhibition model was the Edwards model, presenting correlation coefficients of R² > 0.98 and modelling efficiency of ME > 0.94 for the prediction of biomass and phenol concentrations on the validation datasets. The calculated biokinetic model parameters place this new strain among the bacteria with the highest tolerance towards phenol. The results suggest that the A. towneri CFII-87 strain can potentially be used in the treatment of phenolic wastewaters.

Dynamics of symbiotic bacterial community in whole life stage of Harmonia axyridis (Coleoptera: Coccinellidae)

INTRODUCTION

Bacteria play critical roles in the reproduction, metabolism, physiology, and detoxification of their insect hosts. The ladybird beetle (Harmonia axyridis) harbors a myriad of endosymbiotic microbes. However, to date, little is known about how the microbial composition of H. axyridis varies throughout its life cycle.

METHODS

In this study, 16S rRNA amplicon sequencing and quantitative PCR were employed to investigate the diversity and dynamics of bacterial symbionts across the egg, larval, pupae, and adults stages of H. axyridis.

RESULTS

Higher bacterial community richness and diversity were observed in eggs, followed by those in adults and pupae. The community richness index differed significantly between second-instar larvae and other developmental stages. Proteobacteria, Firmicutes, and Actinobacteria were the dominant phyla. Staphylococcus, Enterobacter, Glutamicibacter, and Acinetobacter were the dominant bacteria genera; however, their relative abundances fluctuated across host developmental stages. Interestingly, the larval stage harbored high proportions of Firmicutes, whereas the adult microbial community largely consisted of Proteobacteria.

DISCUSSION

This study is the first to determine the symbiotic bacterial composition across key life stages of H. axyridis. These outcomes can foster the development of environmental risk assessments and novel biological control strategies.

Biodegradation of phenol by Candida tropicalis sp.: Kinetics, identification of putative genes and reconstruction of catabolic pathways by genomic and transcriptomic characteristics

Candida tropicalis sp. was isolated with predominant biodegradation capability to phenol compounds, even with high concentration or in acid environment. The biodegradation of phenol was evaluated at the following concentrations 10-1750 mg L^-1, the strain exhibited well biodegradation efficiency. The maximum specific growth rate was 0.660 h^-1 and the specific biodegradation rates was 0.47 mg (phenol) [(mg (VSS) h]^-1. Differentially expressed genes were screened out, and results revealed a complete process of energy and carbon metabolism. The genes' arrangements and phylogenetic information showed the unique genetic characteristics of the strain. Catabolic pathways were reconstructed and some key phenol-degrading genes were obviously upregulated, including pheA, catA, OXCT and fadA. A notable detail that CMBL encoding carboxymethylenebutenolidase was speculated to be involved in a shortened pathway of phenol biodegradation, thereby contributing to the reconstruction of the novel phenol catabolic pathway through the hydrolases of dienelactone. Finally, key enzymes were verified by the analysis of specific activity.

Kinetic Study of 4-Chlorophenol Biodegradation by Acclimated Sludge in a Packed Bed Reactor

In this study, batch experiments were conducted to evaluate the degradation of 4-CP using acclimated sludge. The Monod and Haldane models were employed to fit the specific growth rate with various initial 4-CP concentrations of 67–412 mg/L in the batch experiments. Haldane kinetics showed a better fit to experimental results than Monod kinetics. The kinetic parameters were obtained from a comparison of Monod and Haldane kinetics with batch experimental data. The values of μm and KS were found to be 0.691 d−1 and 5.62 mg/L, respectively, for Monod kinetics. In contrast, the values of μm, KS, and KI were 1.30 d−1, 8.38 mg/L, and 279.4 mg/L, respectively, for Haldane kinetics. The kinetic parameters in Haldane kinetics were used as input parameters for the kinetic model system of the packed bed reactor (PBR). The continuous flow PBR was conducted to validate the kinetic model system. The model-simulated results agreed well with experimental data in the PBR performance operation. At the steady-state stage, the removal efficiency of 4-CP was 70.8–96.1%, while the hydraulic retention time (HRT) was 2.5 to 12.4 h. The corresponding removal of 4-CP was assessed to be 94.6 and 96.1% when the inlet 4-CP loading rate was increased from 0.11 to 0.51 kg/m3-d. The approaches of kinetic models and experiments presented in this study can be applied to design a PBR for 4-CP treatment in wastewater from the effluents of various industries.

Biodegradation Kinetics of Phenol and 4-Chlorophenol in the Presence of Sodium Salicylate in Batch and Chemostat Systems

The biodegradation of phenol, sodium salicylate (SA), and 4-chlorophenol (4-CP) by Pseudomonas putida (P. putida) was evaluated by batch and chemostat experiments in single and binary substrate systems. The Haldane kinetics model for cell growth was chosen to describe the batch kinetic behavior to determine kinetic parameters in the single or binary substrates system. In the single phenol and SA system, the kinetic constants of μm,P = 0.423 h−1, μm,A = 0.247 h−1, KS,P = 48.1 mg/L, KS,A = 71.7 mg/L, KI,P = 272.5 mg/L, and KI,A = 3178.2 mg/L were evaluated. Experimental results indicate that SA was degraded more rapidly by P. putida cells compared to phenol because SA has a much larger KI value than phenol, which makes the cells less sensitive to substrate inhibition even though the μm,P value is larger compared to μm,A. The ratio of inhibition of phenol degradation due to the presence of SA (IA1) to the inhibition of SA degradation due to the presence of phenol (IA2) is 2.3, indicating that SA has a higher uncompetitive inhibition on phenol biodegradation compared to that of phenol on SA biodegradation in the binary substrate system. In the ternary substrate system, the time required for the complete degradation of SA and phenol was 14 and 11.5 d and an approximately 90% removal efficiency for 4-CP was achieved within 14 d. In the chemostat system, the removal rates of phenol and SA were 96.6 and 97.0%, while those of SA and 4-CP were 91.4% and 95.2%, respectively. The model prediction agreed satisfactorily with the experimental results of the chemostat system.

Linking Increased Isotope Fractionation at Low Concentrations to Enzyme Activity Regulation: 4-Cl Phenol Degradation by Arthrobacter chlorophenolicus A6

Slow microbial degradation of organic trace chemicals ("micropollutants") has been attributed to either downregulation of enzymatic turnover or rate-limiting substrate supply at low concentrations. In previous biodegradation studies, a drastic decrease in isotope fractionation of atrazine revealed a transition from rate-limiting enzyme turnover to membrane permeation as a bottleneck when concentrations fell below the Monod constant of microbial growth. With degradation of the pollutant 4-chlorophenol (4-CP) by Arthrobacter chlorophenolicus A6, this study targeted a bacterium which adapts its enzyme activity to concentrations. Unlike with atrazine degradation, isotope fractionation of 4-CP increased at lower concentrations, from ε(C) = -1.0 ± 0.5‰ in chemostats (D = 0.090 h^-1, 88 mg L^-1) and ε(C) = -2.1 ± 0.5‰ in batch (c₀ = 220 mg L^-1) to ε(C) = -4.1 ± 0.2‰ in chemostats at 90 μg L^-1. Surprisingly, fatty acid composition indicated increased cell wall permeability at high concentrations, while proteomics revealed that catabolic enzymes (CphCI and CphCII) were differentially expressed at D = 0.090 h^-1. These observations support regulation on the enzyme activity level─through either a metabolic shift between catabolic pathways or decreased enzymatic turnover at low concentrations─and, hence, reveal an alternative end-member scenario for bacterial adaptation at low concentrations. Including more degrader strains into this multidisciplinary analytical approach offers the perspective to build a knowledge base on bottlenecks of bioremediation at low concentrations that considers bacterial adaptation.

Kinetics of Cometabolic Transformation of 4-chlorophenol and Phenol Degradation by Pseudomonas putida Cells in Batch and Biofilm Reactors

The biodegradation kinetics of 4-chlorophenol (4-CP) and phenol and microbial growth of Pseudomonas putida (P. putida) cells were estimated in batch and biofilm reactors. The kinetic parameters of cells on phenol were determined using the Haldane formula. The maximum specific growth rate of P. putida on phenol, the half-saturation constant of phenol and the self-inhibition constant of phenol were 0.512 h−1, 78.38 mg/L and 228.5 mg/L, respectively. The yield growth of cells on phenol (YP) was 0.618 mg phenol/mg cell. The batch experimental results for the specific transformation rate of 4-CP by resting P. putida cells were fitted with Haldane kinetics to evaluate the maximum specific utilization rate of 4-CP, half-saturation constant of 4-CP, and self-inhibition constant of 4-CP, which were 0.246 h−1, 1.048 mg/L and 53.40 mg/L, respectively. The negative specific growth rates of cells on 4-CP obtained were fitted using a kinetic equation to investigate the true transformation capacity and first-order endogenous decay coefficient, which were 4.34 mg 4-CP/mg cell and 5.99 × 10−3 h−1, respectively. The competitive inhibition coefficients of phenol to 4-CP transformation and 4-CP to phenol degradation were 6.75 and 9.27 mg/L, respectively; therefore, phenol had a higher competitive inhibition of 4-CP transformation than the converse. The predicted model examining cometabolic transformation of 4-CP and phenol degradation showed good agreement with the experimental observations. The removal efficiencies for phenol and 4-CP were 94.56–98.45% and 96.09–98.85%, respectively, for steady-state performance.

Aerobic degradation of 2,4,6-trinitrophenol by Proteus sp. strain OSES2 obtained from an explosive contaminated tropical soil

A 2,4,6-trinitrophenol (TNP) degrading bacterial strain isolated from a site polluted with explosives was identified as Proteus sp. strain OSES2 via 16S rRNA gene sequencing. Metabolic investigation showed that the organism grew exponentially on 100 mg l^-1 of TNP as a source of carbon, nitrogen, and energy. In addition, the growth of the organism was sustainable on 3-nitrotoluene, 2,4-dinitrotoluene, 2,4,6-trinitrotoluene, 4-nitrophenol, methyl-3-nitrobenzoate, 4-nitroaniline, aniline and nitrobenzene. Strain OSES2 was able to utilize TNP within a concentration range of 100 mg l^-1 to 500 mg l^-1. The specific growth rate and degradation rates on TNP were 0.01043 h^-1 and 0.01766 mg l^-1 h^-1 respectively. Effective degradation of TNP in a chemically defined medium was evident with a gradual reduction in the concentration of TNP concomitant with an increase in cell density as well as the substantial release of ammonium (NH₄⁺), nitrite (NO₂^-), and nitrate (NO₃^-) as metabolites in 96 h. Degradation competence of the organism was enhanced in the presence of starch and acetate. On starch-supplemented TNP, the highest specific growth rate and degradation rates were 0.02634 h^-1 and 0.04458 mg l^-1 h^-1, respectively, while the corresponding values on acetate were 0.02341 h^-1 and 0.02811 mg l^-1 h^-1. However, amendment with nitrogen sources yielded no substantial improvement in degradation. TNP was utilized optimally at pH 7 to 9 and within the temperature range of 30 °C to 37 °C. The enzyme hydride transferase II [HTII], encoded by the npdI gene which is the first step involved in the TNP degradation pathway, was readily expressed by the isolate thus suggesting that substrate was utilized through the classical metabolic pathway.

Newly introduced Cardinium endosymbiont reduces microbial diversity in the rice brown planthopper Nilaparvata lugens

Symbiotic microorganisms in invertebrates play vital roles in host ecology and evolution. Cardinium, a common intracellular symbiont, is transinfected into the important agricultural pest Nilaparvata lugens (rice brown planthopper) to regulate its reproduction, but how this impacts its microbial community is unknown. Here, we characterized the bacterial microbiota from N. lugens, with or without Cardinium, at different developmental stages and in various adult tissues using 16S ribosomal ribonucleic acid (16S rRNA) gene sequencing. Upon infection with Cardinium, we found that microbial diversity in the different developmental stages of N. lugens (especially females), and in female midguts and male testes, was lower than that in the uninfected control. There was a negative correlation between Cardinium and most related genera and between Bacteroidetes and Proteobacteria. Although the microbial structure varied during Cardinium infection, Acinetobacter spp. were a core microbiome genus. The Cardinium infection enhanced the relative density of midgut-associated Acinetobacter spp., with both bacteria exhibiting tissue-specific tropism. In addition, this infection caused the changes of main microbial functions in N. lugens. These results offer insights into the effects of alien (i.e. newly introduced from other organism) Cardinium infection on N. lugens-associated microbiotas, aiding in the development of transinfected endosymbionts for pest control.

Treatment technologies and degradation pathways of glyphosate: A critical review

Glyphosate is one of the most widely used post-emergence broad-spectrum herbicides in the world. This molecule has been frequently detected in aqueous environment and can cause adverse effects to plants, animals, microorganisms, and humans. This review offers a comparative assessment of current treatment methods (physical, biological, and advanced oxidation process) for glyphosate wastewaters, considering their advantages and drawbacks. As for other molecules, adsorption does not destroy glyphosate. It can be used before other processes, if glyphosate concentrations are very high, or after, to decrease the final concentration of glyphosate and its by-products. Most of biological and oxidation processes can destroy glyphosate molecules, leading to by-products (the main ones being AMAP and sarcosine) that can be or not affected by these processes. This point is of major importance to control process efficiency. That is the reason why a specific focus on glyphosate degradation pathways by biological treatment or different advanced oxidation processes is proposed. However, one process is usually not efficient enough to reach the required standards. Therefore, the combination of processes (for instance biological and oxidation ones) seems to be high-performance technologies for the treatment of glyphosate-containing wastewater, due to their potential to overcome some drawbacks of each individual process. Finally, this review provides indications for future work for different treatment processes to increase their performances and gives some insights into the treatment of glyphosate or other organic contaminants in wastewater.

Variation in the microbiome of the spider mite Tetranychus truncatus with sex, instar and endosymbiont infection

Most arthropod-associated bacterial communities play a crucial role in host functional traits, whose structure could be dominated by endosymbionts. The spider mite Tetranychus truncatus is a notorious agricultural pest harboring various endosymbionts, yet the effects of endosymbionts on spider mite microbiota remain largely unknown. Here, using deep sequencing of the 16S rRNA gene, we characterized the microbiota of male and female T. truncatus with different endosymbionts (Wolbachia and Spiroplasma) across different developmental stages. Although the spider mite microbiota composition varied across the different developmental stages, Proteobacteria were the most dominant bacteria harbored in all samples. Positive relationships among related operational taxonomic units dominated the significant coassociation networks among bacteria. Moreover, the spider mites coinfected with Wolbachia and Spiroplasma had a significantly higher daily fecundity and juvenile survival rate than the singly infected or uninfected spider mites. The possible function of spider-mite associated bacteria was discussed. Our results highlight the dynamics of spider mite microbiotas across different life stages, and the potential role of endosymbionts in shaping the microbiota of spider mites and improving host fitness.

Inhibitory effect of phenol on wastewater ammonification

This study aimed to elucidate inhibitory effect of phenol on ammonification of dissolved organic nitrogen (DON) in wastewater. Laboratory incubation experiments were conducted using primary and secondary effluent samples spiked with phenol (100-1000 mg/L) and inoculated with mixed cultures, pure strains of phenol-degrading bacteria (Acinetobacter sp. and Pseudomonas putida F1), and/or an ammonia oxidizing bacterium (Nitrosomonas europaea). DON concentration was monitored with incubation time. Phenol suppressed the ammonification rate of DON up to 62.9%. No or minimal ammonification inhibition was observed at 100 mg/L of phenol while the inhibition increased with increasing phenol concentration from 250 to 1000 mg/L. The inhibition was curtailed by the presence of the phenol-degrading bacteria. DON was ammonified in the samples inoculated with only N. europaea and the ammonification was also inhibited by phenol. The findings suggest that high phenol in wastewater could result in low ammonification and high DON in the effluent.

Metabolite profiling of rhizosphere soil of different allelopathic potential rice accessions

BACKGROUND

Identification of the allelopathy-interrelated metabolites from the allelopathic rice rhizosphere is crucial to understand the allelopathic mechanism of rice, which in turn can promote its applications to farming. In this study, the metabolites from the rhizosphere soil of five different rice lines, including allelopathic rice accession PI312777 (PI) and non-allelopathic rice accession Lemont (Le) as well as their genetic derivatives (e.g., phenylalanine ammonia-lyase (PAL) gene overexpression transgenic lines of PI and Le, namely, PO and LO respectively, and PAL RNA interference line of PI, namely, PR) were identified and comparatively analyzed to explore the positive compounds that are involved in the process of rice allelopathy.

RESULTS

The results showed that 21 non-polar compounds and 21 polar compounds differed in content in the rhizosphere soil of PI and Le, which include several volatile fatty acids and long-chain fatty acids. The relative contents of fatty acids also differed between PAL overexpressing or RNA interference (RNAi)-silenced line and their wild-type respectively. Acetic acid content also differed among groups, i.e., it is higher in the high allelopathic potential rice. Further analysis showed that different metabolites from the ADS8 resin-extracted phase were more abundant than that those from the ADS21 resin-extracted phase, suggesting that the allelochemicals in root exudates of allelopathic rice are mainly non-polar substances. KEGG annotation of these differential metabolites revealed that these compounds were related to nutrient metabolism, secondary metabolite synthesis, signaling substance synthesis, and toxin degradation.

CONCLUSIONS

Rice allelochemicals deposited in the ADS8 resin-extracted phase were more abundant than those in the ADS21 resin-extracted phase. Allelochemicals in root exudates of allelopathic rice are mainly non-polar substances, and long-chain fatty acids are considered as allelopathy interrelated metabolites.

Biokinetic aspects for biocatalytic remediation of xenobiotics polluted seawater

AIMS

This research was conducted to investigate the biocatalytic remediation of xenobiotics polluted seawater using two biocatalysts; whole bacterial cells of facultative aerobic halotolerant Corynebacterium variabilis Sh42 and its extracted crude enzymes.

METHODS AND RESULTS

One-Factor-at-A-Time technique and statistical analysis were applied to study the effect of initial substrate concentrations, pH, temperature, and initial biocatalyst concentrations on the batch biocatalytic degradation of three xenobiotic pollutants (2-hydroxybiphenyl (2-HBP), catechol and benzoic acid) in artificial seawater (salinity 3·1%). HPLC and gas-chromatography mass spectroscopy analyses were utilized to illustrate the quantitative removal of the studied aromatic xenobiotic pollutants and their catabolic pathway. The results revealed that the microbial and enzymatic cultures followed substrate inhibition kinetics. Yano and Koga's equation showed the best fit for the biokinetic degradation rates of 2-HBP and benzoic acid, whereas Haldane biokinetic model adequately expressed the specific biodegradation rate of catechol. The biokinetic results indicated the good efficiency and tolerance of crude enzyme for biocatalytic degradation of extremely high concentrations of aromatic pollutants than whole C. variabilis Sh42 cells. The monitored by-products indicated that the catabolic degradation pathway followed an oxidation mechanism via a site-specific monooxygenase enzyme. Benzoic acid and catechol were identified as major intermediates in the biodegradation pathway of 2-HBP, which were then biodegraded through meta-cleavage to 2-hydroxymuconic semialdehyde. With time elapsed, the semialdehyde product was further biodegraded to acetaldehyde and pyruvic acid, which would be further metabolized via the bacterial TCA cycle.

CONCLUSION

The batch enzymatic bioreactors performed superior-specific biocatalytic degradation rates for all the studied xenobiotic pollutants.

SIGNIFICANCE AND IMPACT OF THE STUDY

The enzymatic system of C. variabilis Sh42 is tolerable for toxic xenobiotics and different physicochemical environmental parameters. Thus, it can be recommended as an effective biocatalyst for biocatalytic remediation of xenobiotics polluted seawater.

A cryogel-based bioreactor for water treatment applications

The aim of this study was to develop and test a non-diffusion limited, high cell density bioreactor for biodegradation of various phenol derivatives. The bioreactor was obtained using a straightforward one-step preparation method using cryostructuration and direct cross-linking of bacteria into a 3D structured (sponge-like) macroporous cryogel composite material consisting of 11.6% (by mass) cells and 1.2-1.7% polymer, with approximately 87% water (in the material pores). The macroporous cryogel composite material, composed of live bacteria, has pore sizes in the range of 20-150 μm (confirmed by SEM and Laser Scanning Confocal Microscopy). The enzymatic activity of bacteria within the cryogel structure and the effect of freezing on the viability of the cross-linked cells was estimated by MTT assay. Cryogels based on Pseudomonas mendocina, Rhodococcus koreensis and Acinetobacter radioresistens were exploited for the effective bioremediation of phenol and m-cresol, and to a lesser extent 2-chlorophenol and 4-chlorophenol, utilising these phenolic contaminants in water as their only source of carbon. For evaluation of treatment scalability the bioreactors were prepared in plastic "Kaldnes" carriers to improve their mechanical properties and allow application in batch or fluidised bed water treatment modes.

Pyrosequencing Uncovers a Shift in Bacterial Communities Across Life Stages of Octodonta nipae (Coleoptera: Chrysomelidae)

Bacterial symbionts of insects affect a wide array of host traits including fitness and immunity. Octodonta nipae (Maulik), commonly known as hispid leaf beetle is a destructive palm pest around the world. Understanding the dynamics of microbiota is essential to unravel the complex interplay between O. nipae and its bacterial symbionts. In this study, bacterial 16S rRNA V3-V4 region was targeted to decipher the diversity and dynamics of bacterial symbionts across different life stages [eggs, larvae, pupae, and adult (male and female)] and reproductive organs (ovaries and testis) of O. nipae. Clustering analysis at ≥97% similarity threshold produced 3,959 operational taxonomic units (OTUs) that belonged to nine different phyla. Proteobacteria, Actinobacteria, and Firmicutes represented the bulk of taxa that underwent notable changes during metamorphosis. Enterobacteriaceae and Dermabacteraceae were the most abundant families in immature stages (eggs, larvae, and pupae), while Anaplasmataceae family was dominated in adults (male and female) and reproductive organs (ovaries and testis). The genus Serratia and Lactococcus were most abundant in eggs, whereas Pantoea and Brachybacterium represented the bulk of larvae and pupae microbiota. Interestingly the genus Wolbachia found positive to all tested samples and was recorded extremely high (>64%) in the adults and reproductive organs. The bacteria varied across the developmental stages and responsible for various metabolic activities. Selection choice exerted by the insect host as a result of its age or developmental stage could be the main reason to ascertain the shift in the bacteria populations. Maternally inherited Wolbachia was found to be an obligate endosymbiont infecting all tested life stages, body parts, and tissues. These outcomes foster our understanding of the intricate associations between bacteria and O. nipae and will incorporate in devising novel pest control strategies against this palm pest.

Microalgae cultivation for phenolic compounds removal

Microalgae are promising sustainable and renewable sources of oils that can be used for biodiesel production. In addition, they contain important compounds, such as proteins and pigments, which have large applications in the food and pharmaceutical industries. Combining the production of these valuable products with wastewater treatment renders the cultivation of microalgae very attractive and economically feasible. This review paper presents and discusses the current applications of microalgae cultivation for wastewater treatment, particularly for the removal of phenolic compounds. The effects of cultivation conditions on the rate of contaminants removal and biomass productivity, as well as the chemical composition of microalgae cells are also discussed.

2-Chlorophenol consumption by cometabolism in nitrifying SBR reactors

Cometabolic consumption of 2-chlorophenol (2-CP) by a nitrifying sludge was evaluated in two SBR reactors fed with 60 mg 2-CP-C/L and different initial ammonium concentrations (100, 200, 300, 400, and 500 mg NH₄⁺-N/L). Irrespectively to the increase in ammonium concentration and throughout the operational cycles, the sludge achieved a complete nitrification in 14 days, accounting for ammonium consumption efficiencies close to 99% and nitrate production yields between 0.93 and 0.99. The sludge was able to completely consume 2-CP within 7 days. The increase in ammonium concentration provoked an increment in the specific rates of both ammonium (qNH₄⁺-N) and 2-CP (q2-CP-C) consumption up to 5.2 and 3.1 times, respectively. The cometabolic effect of the increase in ammonium concentration on 2-CP consumption was supported by a direct and significant relationship between the qNH₄⁺-N and q2-CP-C (r = 0.83). Moreover, batch assays conducted with ammonium, 2-CP, allylthiourea as specific inhibitor of the ammonium monooxygenase (AMO) enzyme, and the sludge inoculated into the reactors, resulted in a decrease of 34% in q2-CP-C, evidencing the participation of the AMO in the consumption of 2-CP. When the same assays were carried out with the sludge obtained from the SBR reactors after 13 operating cycles, a higher participation of the AMO in 2-CP consumption was noticed with a decrease of 53% in q2-CP-C. According to these results, the use of nitrifying sludge and high ammonium concentrations in SBR systems can be a suitable alternative for increasing the cometabolic consumption of recalcitrant compounds like 2-CP.

Bacterial Biodegradation of 4-Monohalogenated Diphenyl Ethers in One-Substrate and Co-Metabolic Systems

The use of diphenyl ether (DE) and its 4-monohalogenated derivatives (4-HDE) as flame retardants, solvents, and substrates in biocide production significantly increases the risk of ecosystem contamination. Their removal is important from the point of view of environmental protection. The aim of this study was to evaluate the degradation processes of DE and 4-HDE by enzymes of the environmental bacterial strains under one-substrate and co-metabolic conditions. The study is focused on the biodegradation of DE and 4-HDE, the enzymatic activity of microbial strains, and the cell surface properties after contact with compounds. The results show that the highest biodegradation (96%) was observed for 4-chlorodiphenyl ether in co-metabolic culture with P. fluorescens B01. Moreover, the activity of 1,2-dioxygenase during degradation of 4-monohalogenated diphenyl ethers was higher than that of 2,3-dioxygenase for each strain tested. The presence of a co-substrate provoked changes in dioxygenase activity, resulting in the increased activity of 1,2-dioxygenase. Moreover, the addition of phenol as a co-substrate allowed for increased biodegradation of the diphenyl ethers and noticeable modification of the cell surface hydrophobicity during the process. All observations within the study performed have led to a deeper understanding of the contaminants’ biodegradation processes catalyzed by environmental bacteria.

Kinetic study on biodegradation of glyphosate with unacclimated activated sludge

This article is concerned with the study of biodegradation of an organophosphorus herbicide (glyphosate) using unacclimated activated sludge. Glyphosate at different concentrations (0.1, 0.5, 1, 2 and 5 g/L) was tested for cellular growth. On the other hand, the effect of glyphosate on its own biodegradation was studied by evaluating the fittings of different kinetic models (Andrews, Aiba et al., Han and Levenspiel, Luong, Tessier, Webb, Tseng and Wayman, Yano and Koga). According to the obtained results, the activated sludge was able to use glyphosate as the sole carbon source; however, 2 and 5 g/L glyphosate seemed to inhibit cellular growth. Moreover, glyphosate at initial concentrations of 0.1, 0.5 and 1 g/L was completely degraded within 4, 13 and 18 h of incubation, respectively. Yano and Koga model was the best-fit model (R2 = 0.999, F = 173,106 and P = 0.000006).

Monitoring and modeling 4-chlorophenol biodegradation kinetics by phenol-acclimated activated sludge by using open respirometry

The aim of this study was to analyze the mechanisms, stoichiometry, and stability of 4-chlorophenol (4CP) biodegradation kinetics by phenol-acclimated activated sludge using open respirometry. While the removal of 4CP was higher than 98%, the removal of chemical oxygen demand (COD) ranged between 69 and 79% due to the accumulation of an intermediate metabolite. The value obtained from respirometric profiles for the stoichiometric ratio of O₂ to 4CP (Y_O2/4CP) was 1.95 ± 0.04 mol of oxygen consumed per mol of 4CP removed. This Y_O2/4CP value reflected the action of the oxygenases responsible for the first steps of the aerobic oxidation of 4CP. The 4CP degradation activity decreased noticeably when successive pulses of 4CP were added to the respirometer. A mathematical model was developed to represent the aerobic biodegradation of 4CP. The fitted model adequately predicted the oxygen consumption rate, total phenols, and soluble COD concentrations as a function of time. The results presented could help to predict the dynamic of biodegradation of chlorophenols in a biological wastewater treatment system.

Degradation of 4-chlorophenol and microbial diversity in soil inoculated with single Pseudomonas sp. CF600 and Stenotrophomonas maltophilia KB2

Soil contamination with chlorophenols is a serious problem all over the world due to their common use in different branches of industry and agriculture. The objective of this study was to determine whether bioaugmenting soil with single Pseudomonas sp. CF600 and Stenotrophomonas maltophilia KB2 and additional carbon sources such as phenol (P) and sodium benzoate (SB) could enhance the degradation of 4-chlorophenol (4-CP). During the degradation experiment, the number of bacteria as well as the structural and functional diversity of the soil microbial communities were determined. It was found that the most effective degradation of 4-CP in the soil was observed after it was inoculated with CF600 and the addition of SB. The biodegradation of five doses of 4-CP in this soil proceeded within 100 days. At the same time, the rate of the disappearance of 4-CP in the soil that had been bioaugmented with CF600 and contaminated with 4-CP and P was 5-6.5 times lower compared to its rate of disappearance in the soil that had been contaminated with 4-CP. The biodegradation of 4-CP in all of the treated and untreated soils was accompanied by a systematic decrease in the number of heterotrophic bacteria (THB) ranging between 13 and 40%. It was also proven that the tested aromatic compounds affected the soil microbial community structure through an increase in the marker fatty acids for Gram-negative bacteria (BG-) and fungi (F). The essential changes in the patterns of the fatty acid methyl esters (FAMEs) for the polluted soil included an increase in the fatty acid saturation and hydroxy fatty acid abundance. The obtained results also indicated that the introduction of CF600 into the soil contaminated with 4-CP and SB or P caused an increase in the functional diversity of the soil microorganisms. In contrast, in the soil that had been inoculated with KB2 and in the non-inoculated soil, the addition of 4-CP and P decreased the microbial activity. In conclusion, the inoculation of both strains into contaminated soil with aromatic compounds caused irreversible changes in the functional and structural diversity of the soil microbial communities.

Co-biodegradation of anthracene and naphthalene by the bacterium Acinetobacter johnsonii

NAP (Naphthalene) and ANT (anthracene) usually co-exist in environment and possessed interactional effects on their biodegradation in environment. Presently, a strain of Acinetobacter johnsonii was employed to degrade NAP and ANT in single- and dual-substrate systems. NAP was utilized as prefer substrate by cells to accelerate ANT biodegradation. As much as 200 mg L^-1 ANT could be entirely degraded with 1,500 mg L^-1 NAP, which was beyond bacterial potential in single substrate system. Especially, the shortest biodegradation period (103 h) for ANT was observed with the presence of 50 mg L^-1 NAP. By contrast, ANT showed strong inhibition on NAP degradation, while the peak biodegradation of 1,950 mg L^-1 NAP with 50 mg L^-1 ANT could still proceed. By introducing an inhibition constant parameter to fit the inhibition on cells, modeling indicated the substrate inhibition for NAP and ANT over the concentrations of 174 and 49 mg L^-1, respectively. Furthermore, enzyme assay revealed the pathway of meta fission in NAP biodegradation due to the appearance of catechol 2,3-dioxygenase activity, and low-level lipase excretion was also found in both NAP and ANT biodegradation, but hardly affect NAP and ANT biodegradation in the present study. To research the interplay of NAP and ANT is conducive to targeted decontamination.

Batch growth kinetic studies of locally isolated cyanide-degrading Serratia marcescens strain AQ07

The evaluation of degradation and growth kinetics of Serratia marcescens strain AQ07 was carried out using three half-order models at all the initial concentrations of cyanide with the values of regression exceeding 0.97. The presence of varying cyanide concentrations reveals that the growth and degradation of bacteria were affected by the increase in cyanide concentration with a total halt at 700 ppm KCN after 72 h incubation. In this study, specific growth and degradation rates were found to trail the substrate inhibition kinetics. These two rates fitted well to the kinetic models of Teissier, Luong, Aiba and Heldane, while the performance of Monod model was found to be unsatisfactory. These models were used to clarify the substrate inhibition on the bacteria growth. The analyses of these models have shown that Luong model has fitted the experimental data with the highest coefficient of determination (R²) value of 0.9794 and 0.9582 with the lowest root mean square error (RMSE) value of 0.000204 and 0.001, respectively, for the specific rate of degradation and growth. It is the only model that illustrates the maximum substrate concentration (S_m) of 713.4 and empirical constant (n) of 1.516. Tessier and Aiba fitted the experimental data with a R² value of 0.8002 and 0.7661 with low RMSE of 0.0006, respectively, for specific biodegradation rate, while having a R² value of 0.9 and RMSE of 0.001, respectively, for specific growth rate. Haldane has the lowest R² value of 0.67 and 0.78 for specific biodegradation and growth rate with RMSE of 0.0006 and 0.002, respectively. This indicates the level of the bacteria stability in varying concentrations of cyanide and the maximum cyanide concentration it can tolerate within a specific time period. The biokinetic constant predicted from this model demonstrates a good ability of the locally isolated bacteria in cyanide remediation in industrial effluents.

Changes in fatty acid composition of Stenotrophomonas maltophilia KB2 during co-metabolic degradation of monochlorophenols

The changes in the cellular fatty acid composition of Stenotrophomonas maltophilia KB2 during co-metabolic degradation of monochlorophenols in the presence of phenol as well as its adaptive mechanisms to these compounds were studied. It was found that bacteria were capable of degrading 4-chlorophenol (4-CP) completely in the presence of phenol, while 2-chlorophenol (2-CP) and 3-chlorophenol (3-CP) they degraded partially. The analysis of the fatty acid profiles indicated that adaptive mechanisms of bacteria depended on earlier exposure to phenol, which isomer they degraded, and on incubation time. In bacteria unexposed to phenol the permeability and structure of their membranes could be modified through the increase of hydroxylated and cyclopropane fatty acids, and straight-chain and hydroxylated fatty acids under 2-CP, 3-CP and 4-CP exposure, respectively. In the exposed cells, regardless of the isomer they degraded, the most important changes were connected with the increase of the contribution of branched fatty acid on day 4 and the content of hydroxylated fatty acids on day 7. The changes, particularly in the proportion of branched fatty acids, could be a good indicator for assessing the progress of the degradation of monochlorophenols by S. maltophilia KB2. In comparison, in phenol-degrading cells the increase of cyclopropane and straight-chain fatty acid content was established. These findings indicated the degradative potential of the tested strain towards the co-metabolic degradation of persistent chlorophenols, and extended the current knowledge about the adaptive mechanisms of these bacteria to such chemicals.

Isolation and growth kinetics of a novel phenol-degrading bacterium Microbacterium oxydans from the sediment of Taihu Lake (China)

Seven phylogenetically diverse phenol-degrading bacterial strains designated as P1 to P7 were isolated from the industry-effluent dump sites of an industrial area near Taihu Lake, China. Through the 16S rDNA sequence analysis, these strains were widely distributed among five different genera: Rhodococcus (P1), Pseudomonas (P2-P4), Acinetobacter (P5), Alcaligenes (P6), and Microbacterium (P7). All seven isolates were capable of growing with phenol as the sole carbon source. Strain P7 was found to be a novel phenol-degrading strain by detailed morphological, physiological and biochemical characteristic analysis as well as the 16S rDNA sequence analyses, and was named Microbacterium oxydans LY1 (M. oxydans LY1 in its short form). Degradation experiments of phenol at various initial concentrations (20-1,000 mg/L) revealed that phenol is an inhibitory substrate to M. oxydans LY1. In a batch culture experiment, more than 95% of the phenol (500 mg/L) was degraded by M. oxydans LY1 at 30°C, pH 7.0 and 120 rpm within 88 h. Phenol concentration higher than 200 mg/L was found to inhibit the bacterial growth. The growth kinetics correlated well with the Haldane model with μmax (maximum specific cell growth rate) = 0.243 h(-1), Ks (saturation constant) = 25.7 mg/L, and Ki (self-inhibition constant) = 156.3 mg/L. This is the first report of the ability of M. oxydans to degrade phenol, and the results could provide important information for bioremediation of phenol-contaminated environments.

Degradation pathway and kinetic analysis for p-xylene removal by a novel Pandoraea sp. strain WL1 and its application in a biotrickling filter

In this study, a novel Pandoraea sp. strain WL1 capable of mineralizing p-xylene as sole carbon and energy source was isolated from the activated sludge of a pharmaceutical wastewater treatment plant. A nearly complete degradation of 16.6∼99.4 mg L(-1)p-xylene in the liquid-phase was achieved within 6∼18 h accompanied by 15.9∼56.3 mg dry cell weight (DCW)L(-1) for bacterial growth. A complete pathway for p-xylene degradation by strain WL1 was presented through identification of a major intermediate (p-toluic acid) and final products (2.193 gCO2 gp-xylene(-1) of CO₂ production and 0.215 g DCW gp-xylene(-1) of bacterial yield). Kinetics of bacterial growth and p-xylene degradation were evaluated using Haldane-Andrews model and pseudo first-order model, respectively. Furthermore, a biotrickling filter (BTF) was employed to evaluate the application of strain WL1 on the removal of gas-phase p-xylene under gas flow rates of 0.41∼1.98 m(3)h(-1) for inlet loading rates of 5∼248 gm(-3)h(-1). The BTF inoculated with strain WL1 proved to be robust against fluctuations of gas flow rates and inlet p-xylene concentrations. All the results obtained highlight the potential of strain WL1 for the treatment of p-xylene.

Experimental and kinetic study on the cometabolic biodegradation of phenol and 4-chlorophenol by psychrotrophic Pseudomonas putida LY1

This study investigated the kinetics of phenol and 4-chlorophenol (4-CP) biodegradation by a cold-adapted bacteria, Pseudomonas putida LY1, isolated from Songhua River sediment. The results showed that P. putida LY1 cannot grow on 4-CP as a sole carbon source. P. putida LY1 had the potential to cometabolic biodegrade phenol and 4-CP in a wide range of temperature (varying from 5 to 35 °C) with the optimal temperature around 25 °C. Mixture of phenol and 4-CP were completely removed at two 4-CP concentrations (15 and 40 mg/L) over a wide range of phenol (20-400 mg/L) concentrations, whereby the ratio of 4-CP/biomass (S 2/X) was lower than 0.03. The kinetic models of cometabolic biodegradation of phenol and 4-CP were proposed, considering the growth and nongrowth substrate inhibition. These models successfully simulate the processes of cometabolic degradation of phenol and 4-CP.

Diversity in gut microflora of Helicoverpa armigera populations from different regions in relation to biological activity of Bacillus thuringiensis δ-endotoxin Cry1Ac

Transgenic crops expressing toxin proteins from Bacillus thuringiensis (Bt) have been deployed on a large scale for management of Helicoverpa armigera. Resistance to Bt toxins has been documented in several papers, and therefore, we examined the role of midgut microflora of H. armigera in its susceptibility to Bt toxins. The susceptibility of H. armigera to Bt toxin Cry1Ac was assessed using Log-dose-Probit analysis, and the microbial communities were identified by 16S rRNA sequencing. The H. armigera populations from nine locations harbored diverse microbial communities, and had some unique bacteria, suggesting a wide geographical variation in microbial community in the midgut of the pod borer larvae. Phylotypes belonging to 32 genera were identified in the H. armigera midgut in field populations from nine locations. Bacteria belonging to Enterobacteriaceae (Order Bacillales) were present in all the populations, and these may be the common members of the H. armigera larval midgut microflora. Presence and/or absence of certain species were linked to H. armigera susceptibility to Bt toxins, but there were no clear trends across locations. Variation in susceptibility of F1 neonates of H. armigera from different locations to the Bt toxin Cry1Ac was found to be 3.4-fold. These findings support the idea that insect migut microflora may influence the biological activity of Bt toxins.

Application of two bacterial strains for wastewater bioremediation and assessment of phenolics biodegradation

The use of native bacteria is a useful strategy to decontaminate industrial effluents. In this work, two bacterial strains isolated from polluted environments constitutes a promising alternative since they were able to remove several phenolic compounds not only from synthetic solutions but also from effluents derived from a chemical industry and a tannery which are complex matrices. Acinetobacter sp. RTE 1.4 showed ability to completely remove 2-methoxyphenol (1000 mg/L) while Rhodococcus sp. CS 1 not only degrade the same concentration of this compound but also removed 4- chlorophenol, 2,4-dichlorophenol and pentachlorophenol with high efficiency. Moreover, both bacteria degraded phenols naturally present or even exogenously added at high concentrations in effluents from the chemical industry and a tannery in short time (up to 5 d). In addition, a significant reduction of biological oxygen demand and chemical oxygen demand values was achieved after 7 d of treatment for both effluents using Acinetobacter sp. RTE 1.4 and Rhodococcus sp. CS1, respectively. These results showed that Acinetobacter sp. RTE1.4 and Rhodococcus sp. CS 1 might be considered as useful biotechnological tools for an efficient treatment of different effluents, since they showed wide versatility to detoxify these complex matrices, even supplemented with high phenol concentrations.

Cross effect of temperature, pH and free ammonia on autotrophic denitrification process with sulphide as electron donor

Autotrophic denitrification is a suitable technology to simultaneously remove oxidised nitrogen compounds and reduced sulphur compounds yielding nitrogen gas, sulphur and sulphate as the main products. In this work, several batch tests were conducted to investigate the cross effect of temperature, pH and free ammonia on the autotrophic denitrification. Denitrification efficiencies above 95% were achieved at 35°C and pH 7.5-8.0 with maximum specific autotrophic denitrifying activities up to 188mgN2g(-1)VSSd(-1). Free ammonia did not show any effect on denitrification at concentrations up to 53mg NH3-NL(-1). Different sulphide concentrations were also tested with stoichiometric nitrite and nitrate concentrations. Sulphide inhibited denitrification at concentrations higher than 200mgS(2-)L(-1). A 50% inhibition was also found at nitrite concentrations above 48mg NO2(-)-NL(-1). The maximum specific activity decreased until a value of 25mgN2g(-1) VSSd(-1) at 232mg NO2(-)-NL(-1). The Haldane model was used to describe denitrification inhibition caused by nitrite. Kinetic parameters determined from the fitting of experimental data were rmax=176mgN2g(-1)VSSd(-1), Ks=10.7mg NO2(-)-NL(-1) and Ki=34.7mg NO2(-)-NL(-1). The obtained model allowed optimising an autotrophic denitrification process by avoiding situations of inhibition and thus obtaining higher denitrification efficiencies.

Bioaugmentation of biological contact oxidation reactor (BCOR) with phenol-degrading bacteria for coal gasification wastewater (CGW) treatment

This study was conducted to evaluate the performance of the biological contact oxidation reactor (BCOR) treating coal gasification wastewater (CGW) after augmented with phenol degrading bacteria (PDB). The PDB were isolated with phenol, 4-methyl phenol, 3,5-dimethyl phenol and resorcinol as carbon resources. Much of the refractory phenolic compounds were converted into easily-biodegradable compounds in spite of low TOC removal. The bioaugmentation with PDB significantly enhanced the removal of COD, total phenols (TP) and NH3-N, with efficiencies from 58% to 78%, 66% to 80%, and 5% to 25%, respectively. In addition, the augmented BCOR exhibited strong recovery capability in TP and COD removal while recovery of NH3-N removal needed longer time. Microbial community analysis revealed that the PDB presented as dominant populations in the bacteria consortia, which in turn determined the overall performance of the system.

Biodegradation of 4-bromophenol by Arthrobacter chlorophenolicus A6 in batch shake flasks and in a continuously operated packed bed reactor

The present study investigated growth and biodegradation of 4-bromophenol (4-BP) by Arthrobacter chlorophenolicus A6 in batch shake flasks as well as in a continuously operated packed bed reactor (PBR). Batch growth kinetics of A. chlorophenolicus A6 in presence of 4-BP followed substrate inhibition kinetics with the estimated biokinetic parameters value of μ max = 0.246 h(-1), K i = 111 mg L(-1), K s  = 30.77 mg L(-1) and K = 100 mg L(-1). In addition, variations in the observed and theoretical biomass yield coefficient and maintenance energy of the culture were investigated at different initial 4-BP concentration. Results indicates that the toxicity tolerance and the biomass yield of A. chlorophenolicus A6 towards 4-BP was found to be poor as the organism utilized the substrate mainly for its metabolic maintenance energy. Further, 4-BP biodegradation performance by the microorganism was evaluated in a continuously operated PBR by varying the influent concentration and hydraulic retention time in the ranges 400-1,200 mg L(-1) and 24-7.5 h, respectively. Complete removal of 4-BP was achieved in the PBR up to a loading rate of 2,276 mg L(-1) day(-1).