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Lee TCH, Lai KKY, Xu SJL, Lee FWF. Upregulation of Peridinin-Chlorophyll A-Binding Protein in a Toxic Strain of Prorocentrum hoffmannianum under Normal and Phosphate-Depleted Conditions. Int J Mol Sci 2023; 24:ijms24021735. [PMID: 36675250 PMCID: PMC9864435 DOI: 10.3390/ijms24021735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 01/12/2023] [Accepted: 01/13/2023] [Indexed: 01/18/2023] Open
Abstract
Some strains of the dinoflagellate species Prorocentrum hoffmannianum show contrasting ability to produce diarrhetic shellfish poisoning (DSP) toxins. We previously compared the okadaic acid (OA) production level between a highly toxic strain (CCMP2804) and a non-toxic strain (CCMP683) of P. hoffmannianum and revealed that the cellular concentration of OA in CCMP2804 would increase significantly under the depletion of phosphate. To understand the molecular mechanisms, here, we compared and analyzed the proteome changes of both strains growing under normal condition and at phosphate depletion using two-dimensional gel electrophoresis (2-DE). There were 41 and 33 differential protein spots observed under normal condition and phosphate depletion, respectively, of which most were upregulated in CCMP2804 and 22 were common to both conditions. Due to the lack of matched peptide mass fingerprints in the database, de novo peptide sequencing was applied to identify the differentially expressed proteins. Of those upregulated spots in CCMP2804, nearly 60% were identified as peridinin-chlorophyll a-binding protein (PCP), an important light-harvesting protein for photosynthesis in dinoflagellates. We postulated that the high expression of PCP encourages the production of DSP toxins by enhancing the yields of raw materials such as acetate, glycolate and glycine. Other possible mechanisms of toxicity related to PCP might be through triggering the transcription of non-ribosomal peptide synthetase/polyketide synthase genes and the transportation of dinophysistoxin-4 from chloroplast to vacuoles.
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Affiliation(s)
- Thomas Chun-Hung Lee
- School of Science and Technology, Hong Kong Metropolitan University, Hong Kong, China
| | - Kaze King-Yip Lai
- School of Science and Technology, Hong Kong Metropolitan University, Hong Kong, China
| | - Steven Jing-Liang Xu
- School of Science and Technology, Hong Kong Metropolitan University, Hong Kong, China
| | - Fred Wang-Fat Lee
- School of Science and Technology, Hong Kong Metropolitan University, Hong Kong, China
- State Key Laboratory of Marine Pollution, City University of Hong Kong, Kowloon, Hong Kong, China
- Correspondence: ; Tel.: +852-31202690
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2
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Morales-Amador A, Souto ML, Hertweck C, Fernández JJ, García-Altares M. Rapid Screening of Polyol Polyketides from Marine Dinoflagellates. Anal Chem 2022; 94:14205-14213. [PMID: 36190828 PMCID: PMC9583072 DOI: 10.1021/acs.analchem.2c02185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Abstract
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Dinoflagellate-derived
polyketides are typically large molecules
(>1000 Da) with complex structures, potent bioactivities, and high
toxicities. Their discovery suffers three major bottlenecks: insufficient
bioavailability, low-yield cultivation of producer organisms, and
production of multiple highly related analogues by a single strain.
Consequently, the biotechnological production of therapeutics or toxicological
standards of dinoflagellate-derived polyketides is also hampered.
Strategies based on sensitive and selective techniques for chemical
prospection of dinoflagellate extracts could aid in overcoming these
limitations, as it allows selecting the most interesting candidates
for discovery and exploitation programs according to the biosynthetic
potential. In this work, we assess the combination of data-dependent
liquid chromatography coupled with high-resolution tandem mass spectrometry
(LC–HRMS2) and molecular networking to screen polyol
polyketides. To demonstrate the power of this approach, we selected
dinoflagellate Amphidinium carterae since it is commonly used as a biotechnological model and produces
amphidinols, a family of polyol-polyene compounds with antifungal
and antimycoplasmal activity. First, we screened families of compounds
with multiple hydroxyl groups by examining MS2 profiles
that contain sequential neutral losses of water. Then, we clustered
MS2 spectra by molecular networking to facilitate the dereplication
and discovery of amphidinols. Finally, we used the MS2 fragmentation
behavior of well-characterized luteophanol D as a model to propose
a structural hypothesis of nine novel amphidinols. We envision that
this strategy is a valuable approach to rapidly monitoring toxin production
of known and unknown polyol polyketides in dinoflagellates, even in
small culture volumes, and distinguishing strains according to their
toxin profiles.
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Affiliation(s)
- Adrián Morales-Amador
- Departamento de Química Orgánica, Instituto Universitario de Bio-Orgánica Antonio González (IUBO AG), Universidad de La Laguna (ULL), Avenida Astrofísico Francisco Sánchez 2, 38206 La Laguna, Tenerife, Spain.,Department of Biomolecular Chemistry, Leibniz Institute for Natural Products Research and Infection Biology, Hans Knöll Institute (HKI), Adolf-Reichwein-Straße 23, 07745 Jena, Germany
| | - María L Souto
- Departamento de Química Orgánica, Instituto Universitario de Bio-Orgánica Antonio González (IUBO AG), Universidad de La Laguna (ULL), Avenida Astrofísico Francisco Sánchez 2, 38206 La Laguna, Tenerife, Spain
| | - Christian Hertweck
- Department of Biomolecular Chemistry, Leibniz Institute for Natural Products Research and Infection Biology, Hans Knöll Institute (HKI), Adolf-Reichwein-Straße 23, 07745 Jena, Germany.,Faculty of Biological Sciences, Friedrich Schiller University Jena, 07743 Jena, Germany
| | - José J Fernández
- Departamento de Química Orgánica, Instituto Universitario de Bio-Orgánica Antonio González (IUBO AG), Universidad de La Laguna (ULL), Avenida Astrofísico Francisco Sánchez 2, 38206 La Laguna, Tenerife, Spain
| | - María García-Altares
- Department of Biomolecular Chemistry, Leibniz Institute for Natural Products Research and Infection Biology, Hans Knöll Institute (HKI), Adolf-Reichwein-Straße 23, 07745 Jena, Germany.,Department of Electronic Engineering, Rovira i Virgili University, 43007 Tarragona, Spain
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Pradhan B, Kim H, Abassi S, Ki JS. Toxic Effects and Tumor Promotion Activity of Marine Phytoplankton Toxins: A Review. Toxins (Basel) 2022; 14:toxins14060397. [PMID: 35737058 PMCID: PMC9229940 DOI: 10.3390/toxins14060397] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Accepted: 06/06/2022] [Indexed: 12/25/2022] Open
Abstract
Phytoplankton are photosynthetic microorganisms in aquatic environments that produce many bioactive substances. However, some of them are toxic to aquatic organisms via filter-feeding and are even poisonous to humans through the food chain. Human poisoning from these substances and their serious long-term consequences have resulted in several health threats, including cancer, skin disorders, and other diseases, which have been frequently documented. Seafood poisoning disorders triggered by phytoplankton toxins include paralytic shellfish poisoning (PSP), neurotoxic shellfish poisoning (NSP), amnesic shellfish poisoning (ASP), diarrheic shellfish poisoning (DSP), ciguatera fish poisoning (CFP), and azaspiracid shellfish poisoning (AZP). Accordingly, identifying harmful shellfish poisoning and toxin-producing species and their detrimental effects is urgently required. Although the harmful effects of these toxins are well documented, their possible modes of action are insufficiently understood in terms of clinical symptoms. In this review, we summarize the current state of knowledge regarding phytoplankton toxins and their detrimental consequences, including tumor-promoting activity. The structure, source, and clinical symptoms caused by these toxins, as well as their molecular mechanisms of action on voltage-gated ion channels, are briefly discussed. Moreover, the possible stress-associated reactive oxygen species (ROS)-related modes of action are summarized. Finally, we describe the toxic effects of phytoplankton toxins and discuss future research in the field of stress-associated ROS-related toxicity. Moreover, these toxins can also be used in different pharmacological prospects and can be established as a potent pharmacophore in the near future.
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Affiliation(s)
| | | | | | - Jang-Seu Ki
- Correspondence: ; Tel.: +82-2-2287-5449; Fax: +82-2-2287-0070
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4
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Long M, Krock B, Castrec J, Tillmann U. Unknown Extracellular and Bioactive Metabolites of the Genus Alexandrium: A Review of Overlooked Toxins. Toxins (Basel) 2021; 13:905. [PMID: 34941742 PMCID: PMC8703713 DOI: 10.3390/toxins13120905] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 12/08/2021] [Accepted: 12/14/2021] [Indexed: 12/04/2022] Open
Abstract
Various species of Alexandrium can produce a number of bioactive compounds, e.g., paralytic shellfish toxins (PSTs), spirolides, gymnodimines, goniodomins, and also uncharacterised bioactive extracellular compounds (BECs). The latter metabolites are released into the environment and affect a large range of organisms (from protists to fishes and mammalian cell lines). These compounds mediate allelochemical interactions, have anti-grazing and anti-parasitic activities, and have a potentially strong structuring role for the dynamic of Alexandrium blooms. In many studies evaluating the effects of Alexandrium on marine organisms, only the classical toxins were reported and the involvement of BECs was not considered. A lack of information on the presence/absence of BECs in experimental strains is likely the cause of contrasting results in the literature that render impossible a distinction between PSTs and BECs effects. We review the knowledge on Alexandrium BEC, (i.e., producing species, target cells, physiological effects, detection methods and molecular candidates). Overall, we highlight the need to identify the nature of Alexandrium BECs and urge further research on the chemical interactions according to their ecological importance in the planktonic chemical warfare and due to their potential collateral damage to a wide range of organisms.
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Affiliation(s)
- Marc Long
- IFREMER, Centre de Brest, DYNECO Pelagos, 29280 Plouzané, France;
| | - Bernd Krock
- Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany;
| | - Justine Castrec
- University Brest, CNRS, IRD, Ifremer, LEMAR, 29280 Plouzané, France;
- Station de Recherches Sous-Marines et Océanographiques (STARESO), Punta Revellata, BP33, 20260 Calvi, France
| | - Urban Tillmann
- Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany;
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O'Neill A, Morrell N, Turner AD, Maskrey BH. Method performance verification for the combined detection and quantitation of the marine neurotoxins cyclic imines and brevetoxin shellfish metabolites in mussels (Mytilus edulis) and oysters (Crassostrea gigas) by UHPLC-MS/MS. J Chromatogr B Analyt Technol Biomed Life Sci 2021; 1179:122864. [PMID: 34343946 DOI: 10.1016/j.jchromb.2021.122864] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Revised: 06/17/2021] [Accepted: 07/16/2021] [Indexed: 10/20/2022]
Abstract
A single laboratory method performance verification is reported for a rapid sensitive UHPLC-MS/MS method for the quantification of eight cyclic imine and two brevetoxin analogues in two bivalve shellfish matrices: mussel (Mytilus edulis) and Pacific oyster (Crassostrea gigas). Targeted cyclic imine analogues were from the spirolide, gymnodimine and pinnatoxin groups, namely 20-Me-SPX-C, 13-desMe-SPX-C, 13,19-didesMe-SPX-C, GYM-A, 12-Me-GYM, PnTx-E, PnTx-F and PnTx-G. Brevetoxin analogues consisted of the shellfish metabolites BTX-B5 and S-desoxy-BTX-B2. A rapid dispersive extraction was used as well as a fast six-minute UHPLC-MS/MS analysis. Mobile phase prepared using ammonium fluoride and methanol was optimised for both chromatographic separation and MS/MS response to suit all analytes. Method performance verification checks for both matrices were carried out. Matrix influence was acceptable for the majority of analogues with the MS response for all analogues being linear across an appropriate range of concentrations. In terms of limits of detection and quantitation the method was shown to be highly sensitive when compared with other methods. Acceptable recoveries were found with most analogues, with laboratory precision in terms of intra- and inter-batch precision deemed appropriate. The method was applied to environmental shellfish samples with results showing low concentrations of cyclic imines to be present. The method is fast and highly sensitive for the detection and quantification of all targeted analogues, in both mussel and oyster matrices. Consequently, the method has been shown to provide a useful tool for simultaneous monitoring for the presence or future emergence of these two toxin groups in shellfish.
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Affiliation(s)
- Alison O'Neill
- Centre for Environment Fisheries and Aquaculture Science (Cefas), Barrack Road, Weymouth, Dorset, DT4 8UB, United Kingdom
| | - Nadine Morrell
- Centre for Environment Fisheries and Aquaculture Science (Cefas), Barrack Road, Weymouth, Dorset, DT4 8UB, United Kingdom
| | - Andrew D Turner
- Centre for Environment Fisheries and Aquaculture Science (Cefas), Barrack Road, Weymouth, Dorset, DT4 8UB, United Kingdom
| | - Benjamin H Maskrey
- Centre for Environment Fisheries and Aquaculture Science (Cefas), Barrack Road, Weymouth, Dorset, DT4 8UB, United Kingdom.
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6
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Amorim TL, de Oliveira MAL. Advances in Lipid Capillary Electromigration Methods to Food Analysis Within the 2010s Decade. FOOD ANAL METHOD 2020. [DOI: 10.1007/s12161-020-01772-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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7
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Wang H, Guo R, Lim WA, Allen AE, Ki JS. Comparative transcriptomics of toxin synthesis genes between the non-toxin producing dinoflagellate Cochlodinium polykrikoides and toxigenic Alexandrium pacificum. HARMFUL ALGAE 2020; 93:101777. [PMID: 32307068 DOI: 10.1016/j.hal.2020.101777] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Revised: 02/13/2020] [Accepted: 02/19/2020] [Indexed: 06/11/2023]
Abstract
In the present study, we extensively characterized potential toxin-related genes, including polyketide synthase (PKS), saxitoxin (STX) and fatty acid synthase (FAS) from the non-toxin producing marine dinoflagellate Cochlodinium polykrikoides, comparing to those of a toxigenic dinoflagellate Alexandrium pacificum. RNA sequencing revealed 50 and 271 PKS contigs from C. polykrikoides and A. pacificum, respectively. According to domain constitute and amino acid alteration, we further classified the dinoflagellate type I PKS genes into 4 sub-groups. Type III PKS was first identified in C. polykrikoides. Interestingly, we detected a large number (242 and 288) of homologs of 18 sxt genes from two studied dinoflagellates. Most of the eight key genes (sxtA, sxtB, sxtD, sxtG, sxtH/T, sxtI, sxtS and sxtU) for STX synthesis were detected in both dinoflatellates, whereas a core STX biosynthesis gene sxtG was not detected in C. polykrikoides. This may partially explain the absence of saxitoxin production in C. polykrikoides. In addition, we identified several type I and type II FAS genes, including FabD, FabF, FabG, FabH, FabI, and FabZ, whereas FabB was not found in C. polykrikoides. Overall, the numbers of the toxin-related genes in C. polykrikoides were less than that of A. pacificum. Phylogenetic analyses showed that type I PKS/FASs of dinoflagellates had close relationships with apicomplexans and bacteria. These suggest that the toxin-related PKS and sxt genes are commonly present in toxigenic and non-toxin producing dinoflagellates, and may be involved not only in the toxin synthesis, but also in other related molecular metabolic functions.
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Affiliation(s)
- Hui Wang
- Department of Biotechnology, Sangmyung University, Seoul 03016, South Korea
| | - Ruoyu Guo
- Department of Biotechnology, Sangmyung University, Seoul 03016, South Korea; Key Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration & Second Institute of Oceanography, Ministry of Natural Resources, PR China
| | - Weol-Ae Lim
- Ocean Climate and Ecology Research Division, National Institute of Fisheries Science (NIFS), Busan 46083, South Korea
| | - Andrew E Allen
- Scripps Institution of Oceanography, University of California, San Diego, CA 92093, USA; Microbial and Environmental Genomics Group, J. Craig Venter Institute, La Jolla, CA 92037, USA
| | - Jang-Seu Ki
- Department of Biotechnology, Sangmyung University, Seoul 03016, South Korea.
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8
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Guillen PO, Jaramillo KB, Genta-Jouve G, Thomas OP. Marine natural products from zoantharians: bioactivity, biosynthesis, systematics, and ecological roles. Nat Prod Rep 2020; 37:515-540. [DOI: 10.1039/c9np00043g] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The dazzling marine zoantharians represent a reservoir of chemical diversity that remains to be unveiled. These fragile animals have so far been found to harbour the highly bioactive palytoxins or zoanthamines but also the harmless ecdysteroids or zoanthozanthins.
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Affiliation(s)
- Paul O. Guillen
- Marine Biodiscovery
- School of Chemistry and Ryan Institute
- National University of Ireland Galway (NUI Galway)
- H91 TK33 Galway
- Ireland
| | - Karla B. Jaramillo
- ESPOL Escuela Superior Politécnica del Litoral, ESPOL
- Centro Nacional de Acuacultura e Investigaciones Marinas
- Guayaquil
- Ecuador
- Zoology
| | - Grégory Genta-Jouve
- Muséum National d'Histoire Naturelle
- Unité Molécules de Communication et Adaptation des Micro-organismes (UMR 7245)
- Sorbonne Universités
- CNRS
- Paris
| | - Olivier P. Thomas
- Marine Biodiscovery
- School of Chemistry and Ryan Institute
- National University of Ireland Galway (NUI Galway)
- H91 TK33 Galway
- Ireland
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9
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Niu Z, Xu W, Na J, Lv Z, Zhang Y. How long-term exposure of environmentally relevant antibiotics may stimulate the growth of Prorocentrum lima: A probable positive factor for red tides. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 255:113149. [PMID: 31522007 DOI: 10.1016/j.envpol.2019.113149] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Revised: 07/29/2019] [Accepted: 08/30/2019] [Indexed: 06/10/2023]
Abstract
Antibiotics have been widely detected in the ocean and have various impacts on the environment, while knowledge of their chronic influence on phytoplankton, especially red tide algae, is still limited. Dinoflagellates and green algae are common phytoplankton in marine ecosystems. The former is the main red tide algae, and the latter is an important primary producer. We investigated the long-term responses of two representative algae, Prorocentrum lima and Chlorella sp., to two common antibiotics (sulfamethoxazole (SMX) and norfloxacin (NFX)) at environmentally relevant levels (10 and 100 ng/L) during simulated natural conditions. The cell density and activities of three antioxidant enzymes (superoxide dismutase (SOD), catalase (CAT) and peroxidase (POD)) were analyzed. The results showed that the influence of each antibiotic on Chlorella sp. was not significant (p > 0.05) during the first 10 days, but the influence of the antibiotics later began to show significant inhibition (p < 0.05) compared with the control group, especially during mixed exposure. P. lima was not inhibited, but its cell density increased. SMX had a superior stimulation effect on P. lima. The three enzymes activities of P. lima increased, and the antioxidant mechanism was not seriously impacted. However, for Chlorella sp., the activity of SOD increased while the activities of CAT and POD decreased, suggesting that this algae's antioxidant system was unbalanced due to oxidative stress. Based on our results, the growth of P. lima was different from green algae Chlorella sp. as well as other inhibited marine algae (such as diatom, golden algae) studied in previous studies. Therefore, as a typical pollutant in the ocean, antibiotics may play a positive role in the bloom of dinoflagellate red tides.
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Affiliation(s)
- Zhiguang Niu
- School of Marine Science and Technology, Tianjin University, Tianjin 300072, China
| | - Wei'an Xu
- School of Marine Science and Technology, Tianjin University, Tianjin 300072, China
| | - Jing Na
- School of Marine Science and Technology, Tianjin University, Tianjin 300072, China
| | - Zhiwei Lv
- School of Marine Science and Technology, Tianjin University, Tianjin 300072, China
| | - Ying Zhang
- MOE Key Laboratory of Pollution Processes and Environmental Criteria/Tianjin Key Laboratory of Environmental Technology for Complex Trans-Media Pollution, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, China.
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10
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Chikwililwa C, McCarron P, Waniek JJ, Schulz-Bull DE. Phylogenetic analysis and yessotoxin profiles of Gonyaulax spinifera cultures from the Benguela Current upwelling system. HARMFUL ALGAE 2019; 85:101626. [PMID: 31810531 DOI: 10.1016/j.hal.2019.101626] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2019] [Revised: 05/29/2019] [Accepted: 06/05/2019] [Indexed: 06/10/2023]
Abstract
The Benguela Current in the Atlantic is one of the four major upwelling systems on the Eastern boundary of the world ocean. Thus the coastal regions off Namibia are prone to high primary productivity that can lead to Harmful Algae Blooms as this nutrient rich water reaches the euphotic zone. Yessotoxins (YTXs) produced by G. spinifera were detected in Namibian phytoplankton field samples in 2011. Isolation of G. spinifera cultures from this location in 2012 enabled molecular genetics work and further liquid chromatography-mass spectrometry assessment of toxin profiles. The molecular work grouped the Benguela G. spinifera with other toxic G. spinifera strains originating from Italy and New Zealand. The main YTX analogs present in the Benguela G. spinifera are homo-YTX, YTX and a hydroxylated analogue. This work adds important knowledge on the occurrence of Harmful Algae Blooms in this region and is of relevance for safety.
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Affiliation(s)
- Chibo Chikwililwa
- Ministry of Fisheries and Marine Resources, National Marine Information and Research Centre, Aquaculture Directorate, Strand Street, PO Box 912, Swakopmund, Namibia; Leibniz Institute for Baltic Sea Research Warnemünde (IOW), Seestrasse 15, D-18119 Rostock, Germany; Microalgae and Seaweed Research and Development, Sam Nujoma Campus Henties Bay, University of Namibia, Private Bag 13301, 340 Mandume Ndemufayo Ave, Pionierspark, Windhoek, Namibia
| | - Pearse McCarron
- Biotoxin Metrology, National Research Council Canada, 1411 Oxford Street, Halifax, Nova Scotia, B3H 3Z1, Canada
| | - Joanna J Waniek
- Leibniz Institute for Baltic Sea Research Warnemünde (IOW), Seestrasse 15, D-18119 Rostock, Germany.
| | - Detlef E Schulz-Bull
- Leibniz Institute for Baltic Sea Research Warnemünde (IOW), Seestrasse 15, D-18119 Rostock, Germany
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11
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Beedessee G, Hisata K, Roy MC, Van Dolah FM, Satoh N, Shoguchi E. Diversified secondary metabolite biosynthesis gene repertoire revealed in symbiotic dinoflagellates. Sci Rep 2019; 9:1204. [PMID: 30718591 PMCID: PMC6361889 DOI: 10.1038/s41598-018-37792-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2018] [Accepted: 12/13/2018] [Indexed: 11/09/2022] Open
Abstract
Symbiodiniaceae dinoflagellates possess smaller nuclear genomes than other dinoflagellates and produce structurally specialized, biologically active, secondary metabolites. Till date, little is known about the evolution of secondary metabolism in dinoflagellates as comparative genomic approaches have been hampered by their large genome sizes. Here, we overcome this challenge by combining genomic and metabolomics approaches to investigate how chemical diversity arises in three decoded Symbiodiniaceae genomes (clades A3, B1 and C). Our analyses identify extensive diversification of polyketide synthase and non-ribosomal peptide synthetase genes from two newly decoded genomes of Symbiodinium tridacnidorum (A3) and Cladocopium sp. (C). Phylogenetic analyses indicate that almost all the gene families are derived from lineage-specific gene duplications in all three clades, suggesting divergence for environmental adaptation. Few metabolic pathways are conserved among the three clades and we detect metabolic similarity only in the recently diverged clades, B1 and C. We establish that secondary metabolism protein architecture guides substrate specificity and that gene duplication and domain shuffling have resulted in diversification of secondary metabolism genes.
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Affiliation(s)
- Girish Beedessee
- Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
| | - Kanako Hisata
- Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan
| | - Michael C Roy
- Instrumental Analysis Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan
| | - Frances M Van Dolah
- College of Charleston, School of Sciences and Mathematics, 66 George St., Charleston, South Carolina, 29424, USA
| | - Noriyuki Satoh
- Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan
| | - Eiichi Shoguchi
- Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
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12
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Ogawara H. Comparison of Strategies to Overcome Drug Resistance: Learning from Various Kingdoms. Molecules 2018; 23:E1476. [PMID: 29912169 PMCID: PMC6100412 DOI: 10.3390/molecules23061476] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2018] [Revised: 06/13/2018] [Accepted: 06/15/2018] [Indexed: 11/16/2022] Open
Abstract
Drug resistance, especially antibiotic resistance, is a growing threat to human health. To overcome this problem, it is significant to know precisely the mechanisms of drug resistance and/or self-resistance in various kingdoms, from bacteria through plants to animals, once more. This review compares the molecular mechanisms of the resistance against phycotoxins, toxins from marine and terrestrial animals, plants and fungi, and antibiotics. The results reveal that each kingdom possesses the characteristic features. The main mechanisms in each kingdom are transporters/efflux pumps in phycotoxins, mutation and modification of targets and sequestration in marine and terrestrial animal toxins, ABC transporters and sequestration in plant toxins, transporters in fungal toxins, and various or mixed mechanisms in antibiotics. Antibiotic producers in particular make tremendous efforts for avoiding suicide, and are more flexible and adaptable to the changes of environments. With these features in mind, potential alternative strategies to overcome these resistance problems are discussed. This paper will provide clues for solving the issues of drug resistance.
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Affiliation(s)
- Hiroshi Ogawara
- HO Bio Institute, Yushima-2, Bunkyo-ku, Tokyo 113-0034, Japan.
- Department of Biochemistry, Meiji Pharmaceutical University, Noshio-2, Kiyose, Tokyo 204-8588, Japan.
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Kohli GS, Campbell K, John U, Smith KF, Fraga S, Rhodes LL, Murray SA. Role of Modular Polyketide Synthases in the Production of Polyether Ladder Compounds in Ciguatoxin-Producing Gambierdiscus polynesiensis and G. excentricus (Dinophyceae). J Eukaryot Microbiol 2017; 64:691-706. [PMID: 28211202 DOI: 10.1111/jeu.12405] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2016] [Revised: 01/31/2017] [Accepted: 02/03/2017] [Indexed: 11/28/2022]
Abstract
Gambierdiscus, a benthic dinoflagellate, produces ciguatoxins that cause the human illness Ciguatera. Ciguatoxins are polyether ladder compounds that have a polyketide origin, indicating that polyketide synthases (PKS) are involved in their production. We sequenced transcriptomes of Gambierdiscus excentricus and Gambierdiscus polynesiensis and found 264 contigs encoding single domain ketoacyl synthases (KS; G. excentricus: 106, G. polynesiensis: 143) and ketoreductases (KR; G. excentricus: 7, G. polynesiensis: 8) with sequence similarity to type I PKSs, as reported in other dinoflagellates. In addition, 24 contigs (G. excentricus: 3, G. polynesiensis: 21) encoding multiple PKS domains (forming typical type I PKSs modules) were found. The proposed structure produced by one of these megasynthases resembles a partial carbon backbone of a polyether ladder compound. Seventeen contigs encoding single domain KS, KR, s-malonyltransacylase, dehydratase and enoyl reductase with sequence similarity to type II fatty acid synthases (FAS) in plants were found. Type I PKS and type II FAS genes were distinguished based on the arrangement of domains on the contigs and their sequence similarity and phylogenetic clustering with known PKS/FAS genes in other organisms. This differentiation of PKS and FAS pathways in Gambierdiscus is important, as it will facilitate approaches to investigating toxin biosynthesis pathways in dinoflagellates.
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Affiliation(s)
- Gurjeet S Kohli
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, 2007, Australia.,Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 689528, Singapore
| | - Katrina Campbell
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, David Keir Building, Stranmillis Road, Belfast, BT9 5AG, United Kingdom
| | - Uwe John
- Alfred-Wegener-Institute Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, 27515, Germany.,Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg, Oldenburg, 26111, Germany
| | - Kirsty F Smith
- Cawthron Institute, 98 Halifax Street East, Nelson, 7010, New Zealand
| | - Santiago Fraga
- Instituto Español de Oceanografía, Centro Oceanográfico de Vigo, Subida a Radio Faro 50, Vigo, 36390, Spain
| | - Lesley L Rhodes
- Cawthron Institute, 98 Halifax Street East, Nelson, 7010, New Zealand
| | - Shauna A Murray
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, 2007, Australia
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14
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Beedessee G, Hisata K, Roy MC, Satoh N, Shoguchi E. Multifunctional polyketide synthase genes identified by genomic survey of the symbiotic dinoflagellate, Symbiodinium minutum. BMC Genomics 2015; 16:941. [PMID: 26573520 PMCID: PMC4647583 DOI: 10.1186/s12864-015-2195-8] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2015] [Accepted: 11/05/2015] [Indexed: 11/17/2022] Open
Abstract
Background Dinoflagellates are unicellular marine and freshwater eukaryotes. They possess large nuclear genomes (1.5–245 gigabases) and produce structurally unique and biologically active polyketide secondary metabolites. Although polyketide biosynthesis is well studied in terrestrial and freshwater organisms, only recently have dinoflagellate polyketides been investigated. Transcriptomic analyses have characterized dinoflagellate polyketide synthase genes having single domains. The Genus Symbiodinium, with a comparatively small genome, is a group of major coral symbionts, and the S. minutum nuclear genome has been decoded. Results The present survey investigated the assembled S. minutum genome and identified 25 candidate polyketide synthase (PKS) genes that encode proteins with mono- and multifunctional domains. Predicted proteins retain functionally important amino acids in the catalytic ketosynthase (KS) domain. Molecular phylogenetic analyses of KS domains form a clade in which S. minutum domains cluster within the protist Type I PKS clade with those of other dinoflagellates and other eukaryotes. Single-domain PKS genes are likely expanded in dinoflagellate lineage. Two PKS genes of bacterial origin are found in the S. minutum genome. Interestingly, the largest enzyme is likely expressed as a hybrid non-ribosomal peptide synthetase-polyketide synthase (NRPS-PKS) assembly of 10,601 amino acids, containing NRPS and PKS modules and a thioesterase (TE) domain. We also found intron-rich genes with the minimal set of catalytic domains needed to produce polyketides. Ketosynthase (KS), acyltransferase (AT), and acyl carrier protein (ACP) along with other optional domains are present. Mapping of transcripts to the genome with the dinoflagellate-specific spliced leader sequence, supports expression of multifunctional PKS genes. Metabolite profiling of cultured S. minutum confirmed production of zooxanthellamide D, a polyhydroxy amide polyketide and other unknown polyketide secondary metabolites. Conclusion This genomic survey demonstrates that S. minutum contains genes with the minimal set of catalytic domains needed to produce polyketides and provides evidence of the modular nature of Type I PKS, unlike monofunctional Type I PKS from other dinoflagellates. In addition, our study suggests that diversification of dinoflagellate PKS genes comprises dinoflagellate-specific PKS genes with single domains, multifunctional PKS genes with KS domains orthologous to those of other protists, and PKS genes of bacterial origin. Electronic supplementary material The online version of this article (doi:10.1186/s12864-015-2195-8) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Girish Beedessee
- Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
| | - Kanako Hisata
- Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
| | - Michael C Roy
- Imaging and Instrumental Analysis Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
| | - Noriyuki Satoh
- Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
| | - Eiichi Shoguchi
- Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
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Krock B, Tillmann U, Potvin É, Jeong HJ, Drebing W, Kilcoyne J, Al-Jorani A, Twiner MJ, Göthel Q, Köck M. Structure Elucidation and in Vitro Toxicity of New Azaspiracids Isolated from the Marine Dinoflagellate Azadinium poporum. Mar Drugs 2015; 13:6687-702. [PMID: 26528990 PMCID: PMC4663548 DOI: 10.3390/md13116687] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2015] [Revised: 06/14/2015] [Accepted: 10/14/2015] [Indexed: 11/23/2022] Open
Abstract
Two strains of Azadinium poporum, one from the Korean West coast and the other from the North Sea, were mass cultured for isolation of new azaspiracids. Approximately 0.9 mg of pure AZA-36 (1) and 1.3 mg of pure AZA-37 (2) were isolated from the Korean (870 L) and North Sea (120 L) strains, respectively. The structures were determined to be 3-hydroxy-8-methyl-39-demethyl-azaspiracid-1 (1) and 3-hydroxy-7,8-dihydro-39-demethyl-azaspiracid-1 (2) by ¹H- and (13)C-NMR. Using the Jurkat T lymphocyte cell toxicity assay, (1) and (2) were found to be 6- and 3-fold less toxic than AZA-1, respectively.
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Affiliation(s)
- Bernd Krock
- Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung, Am Handelshafen 12, Bremerhaven 27570, Germany; E-Mails: (U.T.); (W.D.); (Q.G.)
| | - Urban Tillmann
- Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung, Am Handelshafen 12, Bremerhaven 27570, Germany; E-Mails: (U.T.); (W.D.); (Q.G.)
| | - Éric Potvin
- Division of Polar Ocean Environment, Korea Polar Research Institute, Incheon 406-840, Korea; E-Mail:
| | - Hae Jin Jeong
- School of Earth and Environmental Science, Seoul National University, Seoul 151-747, Korea; E-Mail:
| | - Wolfgang Drebing
- Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung, Am Handelshafen 12, Bremerhaven 27570, Germany; E-Mails: (U.T.); (W.D.); (Q.G.)
| | - Jane Kilcoyne
- Marine Institute, Rinville, Oranmore, Co. Galway, H91 R673, Ireland; E-Mail:
| | - Ahmed Al-Jorani
- Department of Natural Sciences, University of Michigan, Dearborn, MI 48202, USA; E-Mails: (A.A.-J.); (M.J.T.)
| | - Michael J. Twiner
- Department of Natural Sciences, University of Michigan, Dearborn, MI 48202, USA; E-Mails: (A.A.-J.); (M.J.T.)
| | - Qun Göthel
- Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung, Am Handelshafen 12, Bremerhaven 27570, Germany; E-Mails: (U.T.); (W.D.); (Q.G.)
| | - Matthias Köck
- Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung, Am Handelshafen 12, Bremerhaven 27570, Germany; E-Mails: (U.T.); (W.D.); (Q.G.)
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Polyketide synthesis genes associated with toxin production in two species of Gambierdiscus (Dinophyceae). BMC Genomics 2015; 16:410. [PMID: 26016672 PMCID: PMC4445524 DOI: 10.1186/s12864-015-1625-y] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2014] [Accepted: 05/07/2015] [Indexed: 11/10/2022] Open
Abstract
Background Marine microbial protists, in particular, dinoflagellates, produce polyketide toxins with ecosystem-wide and human health impacts. Species of Gambierdiscus produce the polyether ladder compounds ciguatoxins and maitotoxins, which can lead to ciguatera fish poisoning, a serious human illness associated with reef fish consumption. Genes associated with the biosynthesis of polyether ladder compounds are yet to be elucidated, however, stable isotope feeding studies of such compounds consistently support their polyketide origin indicating that polyketide synthases are involved in their biosynthesis. Results Here, we report the toxicity, genome size, gene content and transcriptome of Gambierdiscus australes and G. belizeanus. G. australes produced maitotoxin-1 and maitotoxin-3, while G. belizeanus produced maitotoxin-3, for which cell extracts were toxic to mice by IP injection (LD50 = 3.8 mg kg-1). The gene catalogues comprised 83,353 and 84,870 unique contigs, with genome sizes of 32.5 ± 3.7 Gbp and 35 ± 0.88 Gbp, respectively, and are amongst the most comprehensive yet reported from a dinoflagellate. We found three hundred and six genes involved in polyketide biosynthesis, including one hundred and ninty-two ketoacyl synthase transcripts, which formed five unique phylogenetic clusters. Conclusions Two clusters were unique to these maitotoxin-producing dinoflagellate species, suggesting that they may be associated with maitotoxin biosynthesis. This work represents a significant step forward in our understanding of the genetic basis of polyketide production in dinoflagellates, in particular, species responsible for ciguatera fish poisoning. Electronic supplementary material The online version of this article (doi:10.1186/s12864-015-1625-y) contains supplementary material, which is available to authorized users.
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Van Wagoner RM, Satake M, Wright JLC. Polyketide biosynthesis in dinoflagellates: what makes it different? Nat Prod Rep 2014; 31:1101-37. [DOI: 10.1039/c4np00016a] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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18
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Vilches TS, Norte M, Daranas AH, Fernández JJ. Biosynthetic studies on water-soluble derivative 5c (DTX5c). Mar Drugs 2012; 10:2234-2245. [PMID: 23170080 PMCID: PMC3497019 DOI: 10.3390/md10102234] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2012] [Revised: 09/18/2012] [Accepted: 09/20/2012] [Indexed: 11/23/2022] Open
Abstract
The dinoflagellate Prorocentrum belizeanum is responsible for the production of several toxins involved in the red tide phenomenon known as Diarrhetic Shellfish Poisoning (DSP). In this paper we report on the biosynthetic origin of an okadaic acid water-soluble ester derivative, DTX5c, on the basis of the spectroscopical analysis of ¹³C enriched samples obtained by addition of labelled sodium [l-¹³C], [2-¹³C] acetate to artificial cultures of this dinoflagellate.
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Affiliation(s)
- Tamara S. Vilches
- University Institute for Bio-Organic Chemistry “Antonio González”, University of La Laguna, Av. Astrofísico Francisco Sánchez 2, La Laguna 38206, Spain; (T.S.V.); (M.N.)
| | - Manuel Norte
- University Institute for Bio-Organic Chemistry “Antonio González”, University of La Laguna, Av. Astrofísico Francisco Sánchez 2, La Laguna 38206, Spain; (T.S.V.); (M.N.)
- Department of Organic Chemistry, Faculty of Pharmacy, University of La Laguna, Av. Astrofísico Francisco Sánchez s/n, La Laguna 38206, Spain
| | - Antonio Hernández Daranas
- University Institute for Bio-Organic Chemistry “Antonio González”, University of La Laguna, Av. Astrofísico Francisco Sánchez 2, La Laguna 38206, Spain; (T.S.V.); (M.N.)
- Department of Chemical Engineering and Pharmaceutical Technology, Faculty of Pharmacy, University of La Laguna, Av. Astrofísico Francisco Sánchez s/n, La Laguna 38206, Spain
| | - José J. Fernández
- University Institute for Bio-Organic Chemistry “Antonio González”, University of La Laguna, Av. Astrofísico Francisco Sánchez 2, La Laguna 38206, Spain; (T.S.V.); (M.N.)
- Department of Organic Chemistry, Faculty of Pharmacy, University of La Laguna, Av. Astrofísico Francisco Sánchez s/n, La Laguna 38206, Spain
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Gallardo-Rodríguez J, Sánchez-Mirón A, García-Camacho F, López-Rosales L, Chisti Y, Molina-Grima E. Bioactives from microalgal dinoflagellates. Biotechnol Adv 2012; 30:1673-84. [PMID: 22884890 DOI: 10.1016/j.biotechadv.2012.07.005] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2012] [Revised: 07/27/2012] [Accepted: 07/29/2012] [Indexed: 01/12/2023]
Abstract
Dinoflagellate microalgae are an important source of marine biotoxins. Bioactives from dinoflagellates are attracting increasing attention because of their impact on the safety of seafood and potential uses in biomedical, toxicological and pharmacological research. Here we review the potential applications of dinoflagellate toxins and the methods for producing them. Only sparing quantities of dinoflagellate toxins are generally available and this hinders bioactivity characterization and evaluation in possible applications. Approaches to production of increased quantities of dinoflagellate bioactives are discussed. Although many dinoflagellates are fragile and grow slowly, controlled culture in bioreactors appears to be generally suitable for producing many of the metabolites of interest.
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20
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Sasso S, Pohnert G, Lohr M, Mittag M, Hertweck C. Microalgae in the postgenomic era: a blooming reservoir for new natural products. FEMS Microbiol Rev 2012; 36:761-85. [DOI: 10.1111/j.1574-6976.2011.00304.x] [Citation(s) in RCA: 115] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2011] [Accepted: 08/29/2011] [Indexed: 01/20/2023] Open
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21
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Fleming LE, Kirkpatrick B, Backer LC, Walsh CJ, Nierenberg K, Clark J, Reich A, Hollenbeck J, Benson J, Cheng YS, Naar J, Pierce R, Bourdelais AJ, Abraham WM, Kirkpatrick G, Zaias J, Wanner A, Mendes E, Shalat S, Hoagland P, Stephan W, Bean J, Watkins S, Clarke T, Byrne M, Baden DG. Review of Florida Red Tide and Human Health Effects. HARMFUL ALGAE 2011; 10:224-233. [PMID: 21218152 PMCID: PMC3014608 DOI: 10.1016/j.hal.2010.08.006] [Citation(s) in RCA: 109] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
This paper reviews the literature describing research performed over the past decade on the known and possible exposures and human health effects associated with Florida red tides. These harmful algal blooms are caused by the dinoflagellate, Karenia brevis, and similar organisms, all of which produce a suite of natural toxins known as brevetoxins. Florida red tide research has benefited from a consistently funded, long term research program, that has allowed an interdisciplinary team of researchers to focus their attention on this specific environmental issue-one that is critically important to Gulf of Mexico and other coastal communities. This long-term interdisciplinary approach has allowed the team to engage the local community, identify measures to protect public health, take emerging technologies into the field, forge advances in natural products chemistry, and develop a valuable pharmaceutical product. The Review includes a brief discussion of the Florida red tide organisms and their toxins, and then focuses on the effects of these toxins on animals and humans, including how these effects predict what we might expect to see in exposed people.
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Affiliation(s)
- Lora E Fleming
- NSF NIEHS Oceans and Human Health Center, University of Miami, 4600 Rickenbacker Causeway, Miami, FL, 33149
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Kalaitzis JA, Chau R, Kohli GS, Murray SA, Neilan BA. Biosynthesis of toxic naturally-occurring seafood contaminants. Toxicon 2010; 56:244-58. [DOI: 10.1016/j.toxicon.2009.09.001] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2008] [Revised: 08/20/2009] [Accepted: 09/07/2009] [Indexed: 10/20/2022]
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Gene expression in proliferating cells of the dinoflagellate Alexandrium catenella (Dinophyceae). Appl Environ Microbiol 2010; 76:4521-9. [PMID: 20435767 DOI: 10.1128/aem.02345-09] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Understanding the conditions leading to harmful algal blooms, especially those produced by toxic dinoflagellate species, is important for environmental and health safety. In addition to investigations into the environmental conditions necessary for the formation of toxic blooms, we postulate that investigating gene expression in proliferating cells is essential for understanding bloom dynamics. Expressed sequence tags were produced from cultured cells of the toxic dinoflagellate Alexandrium catenella sampled during the initiation phase of growth using Sanger's method and by 454 pyrosequencing. A significant proportion of identified genes (ca. 25%) represented enzymes and proteins that participate in a variety of cellular regulatory mechanisms that may characterize proliferating cells, e.g., control of the cell cycle and division, regulation of transcription, translation and posttranslational protein modifications, signaling, intracellular trafficking, and transport. All of the several genes selected for gene expression assays due to their involvement in metabolism and the cell cycle were overexpressed during exponential growth. These data will be useful for investigating the mechanisms underlying growth and toxin production in toxic Alexandrium species and for studying and monitoring the development of toxic blooms.
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Kellmann R, Stüken A, Orr RJS, Svendsen HM, Jakobsen KS. Biosynthesis and molecular genetics of polyketides in marine dinoflagellates. Mar Drugs 2010; 8:1011-48. [PMID: 20479965 PMCID: PMC2866473 DOI: 10.3390/md8041011] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2010] [Revised: 03/17/2010] [Accepted: 03/26/2010] [Indexed: 11/20/2022] Open
Abstract
Marine dinoflagellates are the single most important group of algae that produce toxins, which have a global impact on human activities. The toxins are chemically diverse, and include macrolides, cyclic polyethers, spirolides and purine alkaloids. Whereas there is a multitude of studies describing the pharmacology of these toxins, there is limited or no knowledge regarding the biochemistry and molecular genetics involved in their biosynthesis. Recently, however, exciting advances have been made. Expressed sequence tag sequencing studies have revealed important insights into the transcriptomes of dinoflagellates, whereas other studies have implicated polyketide synthase genes in the biosynthesis of cyclic polyether toxins, and the molecular genetic basis for the biosynthesis of paralytic shellfish toxins has been elucidated in cyanobacteria. This review summarises the recent progress that has been made regarding the unusual genomes of dinoflagellates, the biosynthesis and molecular genetics of dinoflagellate toxins. In addition, the evolution of these metabolic pathways will be discussed, and an outlook for future research and possible applications is provided.
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Affiliation(s)
- Ralf Kellmann
- University of Bergen, Department of Molecular Biology, 5020 Bergen, Norway; E-Mail:
| | - Anke Stüken
- University of Oslo, Department of Biology, Centre for Ecological and Evolutionary Synthesis (CEES), 0316 Oslo, Norway; E-Mails:
(A.S.);
(K.S.J.)
- University of Oslo, Department of Biology, Microbial Evolution Research Group (MERG), 0316 Oslo, Norway; E-Mail:
| | - Russell J. S. Orr
- University of Oslo, Department of Biology, Microbial Evolution Research Group (MERG), 0316 Oslo, Norway; E-Mail:
| | - Helene M. Svendsen
- University of Bergen, Department of Molecular Biology, 5020 Bergen, Norway; E-Mail:
| | - Kjetill S. Jakobsen
- University of Oslo, Department of Biology, Centre for Ecological and Evolutionary Synthesis (CEES), 0316 Oslo, Norway; E-Mails:
(A.S.);
(K.S.J.)
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Vilotijevic I, Jamison T. Epoxidöffnungskaskaden zur Synthese polycyclischer Polyether-Naturstoffe. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200900600] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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26
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Growth and toxin production in the ciguatera-causing dinoflagellate Gambierdiscus polynesiensis (Dinophyceae) in culture. Toxicon 2009; 56:739-50. [PMID: 19540257 DOI: 10.1016/j.toxicon.2009.06.013] [Citation(s) in RCA: 123] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2009] [Revised: 05/28/2009] [Accepted: 06/02/2009] [Indexed: 11/23/2022]
Abstract
The growth and toxin production in a clonal strain of Gambierdiscus polynesiensis, TB-92, was examined in batch culture conditions. The mean growth rate at exponential phase was (0.13+/-0.03)division day(-1). Regardless of the age of cultures, all mice injected with dichloromethanolic and methanolic extracts showed symptoms specific to ciguatoxin (CTX) and maitotoxin (MTX) bioactivity, respectively. The highest total toxicity assessed in TB-92 cultures was 10.4 x 10(-4) mouse unit cell(-1). The toxin production pattern reveals an enhanced cellular toxin content with the age of the culture. CTX- and MTX-like compounds each accounted for approx. 50% of the total toxicity of TB-92 cultures, except in aged cells where CTXs were dominant. The high ciguatoxic activity of TB-92 was further confirmed in dichloromethanolic extracts by means of the receptor-binding assay. The highest CTX level monitored at late stationary phase was (11.9+/-0.4)pg P-CTX-3C equiv cell(-1). Further HPLC and LC-MS analysis revealed the presence of five CTXs congeners in lipid-soluble extracts, i.e. CTX-3C, -3B, -4A, -4B and M-seco-CTX-3C, and of new CTX congeners. Toxin composition comparison between two G. polynesiensis strains suggests that the toxin profile is a stable characteristic in this species. G. polynesiensis clones also proved inherently more toxic than other Gambierdiscus species isolated from other geographical areas.
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Vilotijevic I, Jamison TF. Epoxide-opening cascades in the synthesis of polycyclic polyether natural products. Angew Chem Int Ed Engl 2009; 48:5250-81. [PMID: 19572302 PMCID: PMC2810545 DOI: 10.1002/anie.200900600] [Citation(s) in RCA: 181] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The structural features of polycyclic polyether natural products can, in some cases, be traced to their biosynthetic origin. However in case that are less well understood, only biosynthetic pathways that feature dramatic, yet speculative, epoxide-opening cascades are proposed. We summarize how such epoxide-opening cascade reactions have been used in the synthesis of polycyclic polyethers (see scheme) and related natural products.The group of polycyclic polyether natural products is of special interest owing to the fascinating structure and biological effects displayed by its members. The latter includes potentially therapeutic antibiotic, antifungal, and anticancer properties, and extreme lethality. The polycyclic structural features of this class of compounds can, in some cases, be traced to their biosynthetic origin, but in others that are less well understood, only to proposed biosynthetic pathways that feature dramatic, yet speculative, epoxide-opening cascades. In this review we summarize how such epoxide-opening cascade reactions have been used in the synthesis of polycyclic polyethers and related natural products.
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Affiliation(s)
- Ivan Vilotijevic
- Department of Chemistry, Massachusettes Institute of Technology, Cambridge, MA 02139 (USA), Fax: (+1) 617-324-0253, , , Homepage: http://web.mit.edu/chemistry/jamison
| | - Timothy F. Jamison
- Department of Chemistry, Massachusettes Institute of Technology, Cambridge, MA 02139 (USA), Fax: (+1) 617-324-0253, , , Homepage: http://web.mit.edu/chemistry/jamison
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The toxic dinoflagellate Karenia brevis encodes novel type I-like polyketide synthases containing discrete catalytic domains. Protist 2008; 159:471-82. [PMID: 18467171 DOI: 10.1016/j.protis.2008.02.004] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2007] [Accepted: 02/08/2008] [Indexed: 11/22/2022]
Abstract
Karenia brevis is the Florida red tide dinoflagellate responsible for detrimental effects on human and environmental health through the production of brevetoxins. Brevetoxins are thought to be synthesized by a polyketide synthase (PKS) complex, but the gene cluster for this PKS has yet to be identified. Here, eight PKS transcripts were identified in K. brevis by high throughput cDNA library screening. Full length sequences were obtained through 3' and 5' RACE, which demonstrated the presence of polyadenylation, 3'-UTRs, and an identical dinoflagellate-specific spliced leader sequence at the 5' end of PKS transcripts. Six transcripts encoded for individual ketosynthase (KS) domains, one ketoreductase (KR), and one transcript encoded both acyl carrier protein (ACP) and KS domains. Transcript lengths ranged from 1875 to 3397 nucleotides, based on sequence analysis, and were confirmed by northern blotting. Baysian phylogenetic analysis of the K. brevis KS domains placed them well within the protist type I PKS clade. Thus although most similar to type I modular PKSs, the presence of individual catalytic domains on separate transcripts suggests a protein structure more similar to type II PKSs, in which each catalytic domain resides on an individual protein. These results identify an unprecedented PKS structure in a toxic dinoflagellate.
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Mazumdar J, Striepen B. Make it or take it: fatty acid metabolism of apicomplexan parasites. EUKARYOTIC CELL 2007; 6:1727-35. [PMID: 17715365 PMCID: PMC2043401 DOI: 10.1128/ec.00255-07] [Citation(s) in RCA: 101] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Jolly Mazumdar
- Department of Cellular Biology, University of Georgia, Paul D Coverdell Center, Athens, GA 30602, USA
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Camacho FG, Rodríguez JG, Mirón AS, García MCC, Belarbi EH, Chisti Y, Grima EM. Biotechnological significance of toxic marine dinoflagellates. Biotechnol Adv 2006; 25:176-94. [PMID: 17208406 DOI: 10.1016/j.biotechadv.2006.11.008] [Citation(s) in RCA: 94] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2006] [Accepted: 11/28/2006] [Indexed: 10/23/2022]
Abstract
Dinoflagellates are microalgae that are associated with the production of many marine toxins. These toxins poison fish, other wildlife and humans. Dinoflagellate-associated human poisonings include paralytic shellfish poisoning, diarrhetic shellfish poisoning, neurotoxic shellfish poisoning, and ciguatera fish poisoning. Dinoflagellate toxins and bioactives are of increasing interest because of their commercial impact, influence on safety of seafood, and potential medical and other applications. This review discusses biotechnological methods of identifying toxic dinoflagellates and detecting their toxins. Potential applications of the toxins are discussed. A lack of sufficient quantities of toxins for investigational purposes remains a significant limitation. Producing quantities of dinoflagellate bioactives requires an ability to mass culture them. Considerations relating to bioreactor culture of generally fragile and slow-growing dinoflagellates are discussed. Production and processing of dinoflagellates to extract bioactives, require attention to biosafety considerations as outlined in this review.
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Affiliation(s)
- F Garcia Camacho
- Department of Chemical Engineering, University of Almería, 04120 Almería, Spain.
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