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For: Zhu Z, Thiele DJ. A specialized nucleosome modulates transcription factor access to a C. glabrata metal responsive promoter. Cell 1996;87:459-70. [PMID: 8898199 DOI: 10.1016/s0092-8674(00)81366-5] [Citation(s) in RCA: 78] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Number Cited by Other Article(s)
1
Onufriev AV. Biologically relevant small variations of intra-cellular pH can have significant effect on stability of protein-DNA complexes, including the nucleosome. Front Mol Biosci 2023;10:1067787. [PMID: 37143824 PMCID: PMC10151541 DOI: 10.3389/fmolb.2023.1067787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Accepted: 01/16/2023] [Indexed: 05/06/2023]  Open
2
Onufriev AV, Schiessel H. The nucleosome: from structure to function through physics. Curr Opin Struct Biol 2019;56:119-130. [DOI: 10.1016/j.sbi.2018.11.003] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2018] [Revised: 11/07/2018] [Accepted: 11/13/2018] [Indexed: 02/07/2023]
3
Fonseca M, Molina M, Winnik D, Busi M, Fariña J, Villalba L, Zapata P. Isolation of a laccase-coding gene from the lignin-degrading fungusPhlebia brevisporaBAFC 633 and heterologous expression inPichia pastoris. J Appl Microbiol 2018;124:1454-1468. [DOI: 10.1111/jam.13720] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2017] [Revised: 01/26/2018] [Accepted: 01/29/2018] [Indexed: 11/28/2022]
4
Fenley AT, Anandakrishnan R, Kidane YH, Onufriev AV. Modulation of nucleosomal DNA accessibility via charge-altering post-translational modifications in histone core. Epigenetics Chromatin 2018;11:11. [PMID: 29548294 PMCID: PMC5856334 DOI: 10.1186/s13072-018-0181-5] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Accepted: 03/06/2018] [Indexed: 12/20/2022]  Open
5
Ichikawa Y, Morohashi N, Tomita N, Mitchell AP, Kurumizaka H, Shimizu M. Sequence-directed nucleosome-depletion is sufficient to activate transcription from a yeast core promoter in vivo. Biochem Biophys Res Commun 2016;476:57-62. [PMID: 27208777 DOI: 10.1016/j.bbrc.2016.05.063] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2016] [Accepted: 05/12/2016] [Indexed: 11/18/2022]
6
Zheng Y, Li X, Hu H. Computational discovery of feature patterns in nucleosomal DNA sequences. Genomics 2014;104:87-95. [PMID: 25063528 DOI: 10.1016/j.ygeno.2014.07.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2013] [Revised: 04/18/2014] [Accepted: 07/15/2014] [Indexed: 11/27/2022]
7
Determinants of nucleosome positioning. Nat Struct Mol Biol 2013;20:267-73. [PMID: 23463311 DOI: 10.1038/nsmb.2506] [Citation(s) in RCA: 452] [Impact Index Per Article: 41.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2012] [Accepted: 01/03/2013] [Indexed: 01/09/2023]
8
Rodriguez J, Tsukiyama T. ATR-like kinase Mec1 facilitates both chromatin accessibility at DNA replication forks and replication fork progression during replication stress. Genes Dev 2013;27:74-86. [PMID: 23307868 DOI: 10.1101/gad.202978.112] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
9
Vedel V, Scotti I. Promoting the promoter. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2011;180:182-189. [PMID: 21421359 DOI: 10.1016/j.plantsci.2010.09.009] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2010] [Revised: 09/23/2010] [Accepted: 09/27/2010] [Indexed: 05/28/2023]
10
Interactions of transcription factors with chromatin. Subcell Biochem 2011;52:223-59. [PMID: 21557086 DOI: 10.1007/978-90-481-9069-0_11] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
11
Determination of the core promoter regions of the Saccharomyces cerevisiae RPS3 gene. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2009;1789:741-50. [PMID: 19853675 DOI: 10.1016/j.bbagrm.2009.10.002] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2009] [Revised: 10/12/2009] [Accepted: 10/13/2009] [Indexed: 12/13/2022]
12
Ransom M, Williams SK, Dechassa ML, Das C, Linger J, Adkins M, Liu C, Bartholomew B, Tyler JK. FACT and the proteasome promote promoter chromatin disassembly and transcriptional initiation. J Biol Chem 2009;284:23461-71. [PMID: 19574230 DOI: 10.1074/jbc.m109.019562] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
13
Ababneh AM. The role of polarization interactions in the wrapping/unwrapping of nucleosomal DNA around the histone octamer: Implications to gene regulation. J Theor Biol 2009;258:229-39. [DOI: 10.1016/j.jtbi.2009.02.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2008] [Revised: 02/10/2009] [Accepted: 02/12/2009] [Indexed: 10/21/2022]
14
Bomble YJ, Case DA. Multiscale modeling of nucleic acids: insights into DNA flexibility. Biopolymers 2008;89:722-31. [PMID: 18412139 DOI: 10.1002/bip.21000] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
15
Sumida N, Nishikawa JI, Kishi H, Amano M, Furuya T, Sonobe H, Ohyama T. A designed curved DNA segment that is a remarkable activator of eukaryotic transcription. FEBS J 2006;273:5691-702. [PMID: 17212784 DOI: 10.1111/j.1742-4658.2006.05557.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
16
Morohashi N, Yamamoto Y, Kuwana S, Morita W, Shindo H, Mitchell AP, Shimizu M. Effect of sequence-directed nucleosome disruption on cell-type-specific repression by alpha2/Mcm1 in the yeast genome. EUKARYOTIC CELL 2006;5:1925-33. [PMID: 16980406 PMCID: PMC1694797 DOI: 10.1128/ec.00105-06] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
17
Bao Y, White CL, Luger K. Nucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure. J Mol Biol 2006;361:617-24. [PMID: 16860337 DOI: 10.1016/j.jmb.2006.06.051] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2006] [Revised: 06/15/2006] [Accepted: 06/21/2006] [Indexed: 11/29/2022]
18
Ishida C, Aranda C, Valenzuela L, Riego L, Deluna A, Recillas-Targa F, Filetici P, López-Revilla R, González A. The UGA3-GLT1 intergenic region constitutes a promoter whose bidirectional nature is determined by chromatin organization in Saccharomyces cerevisiae. Mol Microbiol 2006;59:1790-806. [PMID: 16553884 DOI: 10.1111/j.1365-2958.2006.05055.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
19
Chodaparambil JV, Edayathumangalam RS, Bao Y, Park YJ, Luger K. Nucleosome structure and function. ERNST SCHERING RESEARCH FOUNDATION WORKSHOP 2006:29-46. [PMID: 16568947 DOI: 10.1007/3-540-37633-x_2] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
20
Kanhere A, Bansal M. Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes. Nucleic Acids Res 2005;33:3165-75. [PMID: 15939933 PMCID: PMC1143579 DOI: 10.1093/nar/gki627] [Citation(s) in RCA: 92] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]  Open
21
Chakravarthy S, Park YJ, Chodaparambil J, Edayathumangalam RS, Luger K. Structure and dynamic properties of nucleosome core particles. FEBS Lett 2004;579:895-8. [PMID: 15680970 DOI: 10.1016/j.febslet.2004.11.030] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2004] [Accepted: 11/04/2004] [Indexed: 11/16/2022]
22
White CL, Luger K. Defined structural changes occur in a nucleosome upon Amt1 transcription factor binding. J Mol Biol 2004;342:1391-402. [PMID: 15364568 DOI: 10.1016/j.jmb.2004.07.080] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2004] [Revised: 07/17/2004] [Accepted: 07/20/2004] [Indexed: 11/19/2022]
23
Shivaswamy S, Kassavetis GA, Bhargava P. High-level activation of transcription of the yeast U6 snRNA gene in chromatin by the basal RNA polymerase III transcription factor TFIIIC. Mol Cell Biol 2004;24:3596-606. [PMID: 15082757 PMCID: PMC387771 DOI: 10.1128/mcb.24.9.3596-3606.2004] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
24
Nishikawa JI, Amano M, Fukue Y, Tanaka S, Kishi H, Hirota Y, Yoda K, Ohyama T. Left-handedly curved DNA regulates accessibility to cis-DNA elements in chromatin. Nucleic Acids Res 2004;31:6651-62. [PMID: 14602926 PMCID: PMC275550 DOI: 10.1093/nar/gkg854] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
25
Bi X, Yu Q, Sandmeier JJ, Zou Y. Formation of boundaries of transcriptionally silent chromatin by nucleosome-excluding structures. Mol Cell Biol 2004;24:2118-31. [PMID: 14966290 PMCID: PMC350542 DOI: 10.1128/mcb.24.5.2118-2131.2004] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
26
Morse RH. Getting into chromatin: how do transcription factors get past the histones? Biochem Cell Biol 2003;81:101-12. [PMID: 12897843 DOI: 10.1139/o03-039] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
27
Kwik-Uribe CL, Reaney S, Zhu Z, Smith D. Alterations in cellular IRP-dependent iron regulation by in vitro manganese exposure in undifferentiated PC12 cells. Brain Res 2003;973:1-15. [PMID: 12729948 DOI: 10.1016/s0006-8993(03)02457-0] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
28
Winge DR. Copper metalloregulation of gene expression. ADVANCES IN PROTEIN CHEMISTRY 2003;60:51-92. [PMID: 12418175 DOI: 10.1016/s0065-3233(02)60051-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
29
Luger K. Structure and dynamic behavior of nucleosomes. Curr Opin Genet Dev 2003;13:127-35. [PMID: 12672489 DOI: 10.1016/s0959-437x(03)00026-1] [Citation(s) in RCA: 229] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
30
Suto RK, Edayathumangalam RS, White CL, Melander C, Gottesfeld JM, Dervan PB, Luger K. Crystal structures of nucleosome core particles in complex with minor groove DNA-binding ligands. J Mol Biol 2003;326:371-80. [PMID: 12559907 DOI: 10.1016/s0022-2836(02)01407-9] [Citation(s) in RCA: 116] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
31
Spontaneous access of proteins to buried nucleosomal DNA target sites occurs via a mechanism that is distinct from nucleosome translocation. Mol Cell Biol 2002. [PMID: 12242292 DOI: 10.1128/mbc.22.20.7147-7157.2002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
32
Anderson JD, Thåström A, Widom J. Spontaneous access of proteins to buried nucleosomal DNA target sites occurs via a mechanism that is distinct from nucleosome translocation. Mol Cell Biol 2002;22:7147-57. [PMID: 12242292 PMCID: PMC139820 DOI: 10.1128/mcb.22.20.7147-7157.2002] [Citation(s) in RCA: 97] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
33
Deckert J, Struhl K. Targeted recruitment of Rpd3 histone deacetylase represses transcription by inhibiting recruitment of Swi/Snf, SAGA, and TATA binding protein. Mol Cell Biol 2002;22:6458-70. [PMID: 12192044 PMCID: PMC135627 DOI: 10.1128/mcb.22.18.6458-6470.2002] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
34
Lafontaine I, Lavery R. ADAPT: a molecular mechanics approach for studying the structural properties of long DNA sequences. Biopolymers 2002;56:292-310. [PMID: 11754342 DOI: 10.1002/1097-0282(2000)56:4<292::aid-bip10028>3.0.co;2-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
35
Martin MP, Gerlach VL, Brow DA. A novel upstream RNA polymerase III promoter element becomes essential when the chromatin structure of the yeast U6 RNA gene is altered. Mol Cell Biol 2001;21:6429-39. [PMID: 11533232 PMCID: PMC99790 DOI: 10.1128/mcb.21.19.6429-6439.2001] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
36
Stafford GA, Morse RH. GCN5 dependence of chromatin remodeling and transcriptional activation by the GAL4 and VP16 activation domains in budding yeast. Mol Cell Biol 2001;21:4568-78. [PMID: 11416135 PMCID: PMC87115 DOI: 10.1128/mcb.21.14.4568-4578.2001] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
37
Anderson JD, Widom J. Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites. Mol Cell Biol 2001;21:3830-9. [PMID: 11340174 PMCID: PMC87046 DOI: 10.1128/mcb.21.11.3830-3839.2001] [Citation(s) in RCA: 129] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
38
Koch KA, Allard S, Santoro N, Côté J, Thiele DJ. The Candida glabrata Amt1 copper-sensing transcription factor requires Swi/Snf and Gcn5 at a critical step in copper detoxification. Mol Microbiol 2001;40:1165-74. [PMID: 11401720 DOI: 10.1046/j.1365-2958.2001.02458.x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
39
Beaudoin J, Labbé S. The fission yeast copper-sensing transcription factor Cuf1 regulates the copper transporter gene expression through an Ace1/Amt1-like recognition sequence. J Biol Chem 2001;276:15472-80. [PMID: 11278870 DOI: 10.1074/jbc.m011256200] [Citation(s) in RCA: 60] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
40
Heredia J, Crooks M, Zhu Z. Phosphorylation and Cu+ coordination-dependent DNA binding of the transcription factor Mac1p in the regulation of copper transport. J Biol Chem 2001;276:8793-7. [PMID: 11134042 DOI: 10.1074/jbc.m008179200] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
41
Kumar MJ, Jamaluddin MS, Natarajan K, Kaur D, Datta A. The inducible N-acetylglucosamine catabolic pathway gene cluster in Candida albicans: discrete N-acetylglucosamine-inducible factors interact at the promoter of NAG1. Proc Natl Acad Sci U S A 2000;97:14218-23. [PMID: 11114181 PMCID: PMC18898 DOI: 10.1073/pnas.250452997] [Citation(s) in RCA: 65] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
42
Suter B, Schnappauf G, Thoma F. Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo. Nucleic Acids Res 2000;28:4083-9. [PMID: 11058103 PMCID: PMC113125 DOI: 10.1093/nar/28.21.4083] [Citation(s) in RCA: 114] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
43
Mai X, Chou S, Struhl K. Preferential accessibility of the yeast his3 promoter is determined by a general property of the DNA sequence, not by specific elements. Mol Cell Biol 2000;20:6668-76. [PMID: 10958664 PMCID: PMC86173 DOI: 10.1128/mcb.20.18.6668-6676.2000] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
44
Shimizu M, Mori T, Sakurai T, Shindo H. Destabilization of nucleosomes by an unusual DNA conformation adopted by poly(dA) small middle dotpoly(dT) tracts in vivo. EMBO J 2000;19:3358-65. [PMID: 10880448 PMCID: PMC313933 DOI: 10.1093/emboj/19.13.3358] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
45
Reeves R, Leonard WJ, Nissen MS. Binding of HMG-I(Y) imparts architectural specificity to a positioned nucleosome on the promoter of the human interleukin-2 receptor alpha gene. Mol Cell Biol 2000;20:4666-79. [PMID: 10848593 PMCID: PMC85880 DOI: 10.1128/mcb.20.13.4666-4679.2000] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
46
Pedersen AG, Jensen LJ, Brunak S, Staerfeldt HH, Ussery DW. A DNA structural atlas for Escherichia coli. J Mol Biol 2000;299:907-30. [PMID: 10843847 DOI: 10.1006/jmbi.2000.3787] [Citation(s) in RCA: 178] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
47
El Barkani A, Haynes K, Mösch H, Frosch M, Mühlschlegel FA. Candida glabrata shuttle vectors suitable for translational fusions to lacZ and use of beta-galactosidase as a reporter of gene expression. Gene 2000;246:151-5. [PMID: 10767536 DOI: 10.1016/s0378-1119(00)00065-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Lascaris RF, Groot E, Hoen PB, Mager WH, Planta RJ. Different roles for abf1p and a T-rich promoter element in nucleosome organization of the yeast RPS28A gene. Nucleic Acids Res 2000;28:1390-6. [PMID: 10684934 PMCID: PMC111049 DOI: 10.1093/nar/28.6.1390] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
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Zhan XL, Hong Y, Zhu T, Mitchell AP, Deschenes RJ, Guan KL. Essential functions of protein tyrosine phosphatases PTP2 and PTP3 and RIM11 tyrosine phosphorylation in Saccharomyces cerevisiae meiosis and sporulation. Mol Biol Cell 2000;11:663-76. [PMID: 10679022 PMCID: PMC14801 DOI: 10.1091/mbc.11.2.663] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]  Open
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Fojta M, Brazdova M, Cernocka H, Pecinka P, Brazda V, Palecek J, Jagelska E, Vojtesek B, Pospisilova S, Subramaniam V, Jovin TM, Palecek E. Effects of Oxidation Agents and Metal Ions on Binding of p53 to Supercoiled DNA. J Biomol Struct Dyn 2000;17 Suppl 1:177-83. [DOI: 10.1080/07391102.2000.10506618] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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