4
|
Heidari M, Gerami SH, Bassett B, Graham RM, Chua ACG, Aryal R, House MJ, Collingwood JF, Bettencourt C, Houlden H, Ryten M, Olynyk JK, Trinder D, Johnstone DM, Milward EA. Pathological relationships involving iron and myelin may constitute a shared mechanism linking various rare and common brain diseases. Rare Dis 2016; 4:e1198458. [PMID: 27500074 PMCID: PMC4961263 DOI: 10.1080/21675511.2016.1198458] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2016] [Revised: 05/02/2016] [Accepted: 06/01/2016] [Indexed: 12/18/2022] Open
Abstract
We previously demonstrated elevated brain iron levels in myelinated structures and associated cells in a hemochromatosis Hfe−/−xTfr2mut mouse model. This was accompanied by altered expression of a group of myelin-related genes, including a suite of genes causatively linked to the rare disease family ‘neurodegeneration with brain iron accumulation’ (NBIA). Expanded data mining and ontological analyses have now identified additional myelin-related transcriptome changes in response to brain iron loading. Concordance between the mouse transcriptome changes and human myelin-related gene expression networks in normal and NBIA basal ganglia testifies to potential clinical relevance. These analyses implicate, among others, genes linked to various rare central hypomyelinating leukodystrophies and peripheral neuropathies including Pelizaeus-Merzbacher-like disease and Charcot-Marie-Tooth disease as well as genes linked to other rare neurological diseases such as Niemann-Pick disease. The findings may help understand interrelationships of iron and myelin in more common conditions such as hemochromatosis, multiple sclerosis and various psychiatric disorders.
Collapse
Affiliation(s)
- Moones Heidari
- School of Biomedical Sciences and Pharmacy, The University of Newcastle , Callaghan, NSW, Australia
| | - Sam H Gerami
- School of Biomedical Sciences and Pharmacy, The University of Newcastle , Callaghan, NSW, Australia
| | - Brianna Bassett
- School of Biomedical Sciences and Pharmacy, The University of Newcastle , Callaghan, NSW, Australia
| | - Ross M Graham
- School of Biomedical Sciences & Curtin Health Innovation Research Institute - Biosciences, Curtin University of Technology , Bentley, WA, Australia
| | - Anita C G Chua
- School of Medicine and Pharmacology, University of Western Australia, Fiona Stanley Hospital, Murdoch, WA, Australia; Harry Perkins Institute of Medical Research, Murdoch, WA, Australia
| | - Ritambhara Aryal
- School of Biomedical Sciences and Pharmacy, The University of Newcastle , Callaghan, NSW, Australia
| | - Michael J House
- School of Physics, University of Western Australia , Crawley, WA, Australia
| | - Joanna F Collingwood
- Warwick Engineering in Biomedicine, School of Engineering, University of Warwick , Coventry, UK
| | - Conceição Bettencourt
- Department of Molecular Neuroscience, UCL Institute of Neurology, London, UK; Department of Clinical and Experimental Epilepsy, UCL Institute of Neurology, London, UK
| | - Henry Houlden
- Department of Molecular Neuroscience, UCL Institute of Neurology , London, UK
| | - Mina Ryten
- Department of Molecular Neuroscience, UCL Institute of Neurology, London, UK; Department of Medical and Molecular Genetics, King's College London, London, UK
| | | | - John K Olynyk
- School of Biomedical Sciences & Curtin Health Innovation Research Institute - Biosciences, Curtin University of Technology, Bentley, WA, Australia; Institute for Immunology and Infectious Diseases, Murdoch University, Perth, WA, Australia; Department of Gastroenterology and Hepatology, Fiona Stanley Hospital, Murdoch, WA, Australia; Department of Gastroenterology and Hepatology, Fremantle Hospital, Fremantle, WA, Australia
| | - Debbie Trinder
- School of Medicine and Pharmacology, University of Western Australia, Fiona Stanley Hospital, Murdoch, WA, Australia; Harry Perkins Institute of Medical Research, Murdoch, WA, Australia
| | - Daniel M Johnstone
- Bosch Institute and Discipline of Physiology, University of Sydney , Sydney, NSW, Australia
| | - Elizabeth A Milward
- School of Biomedical Sciences and Pharmacy, The University of Newcastle , Callaghan, NSW, Australia
| |
Collapse
|
12
|
Woodward KJ, Cundall M, Sperle K, Sistermans EA, Ross M, Howell G, Gribble SM, Burford DC, Carter NP, Hobson DL, Garbern JY, Kamholz J, Heng H, Hodes ME, Malcolm S, Hobson GM. Heterogeneous duplications in patients with Pelizaeus-Merzbacher disease suggest a mechanism of coupled homologous and nonhomologous recombination. Am J Hum Genet 2005; 77:966-87. [PMID: 16380909 PMCID: PMC1285180 DOI: 10.1086/498048] [Citation(s) in RCA: 83] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2005] [Accepted: 09/12/2005] [Indexed: 11/04/2022] Open
Abstract
We describe genomic structures of 59 X-chromosome segmental duplications that include the proteolipid protein 1 gene (PLP1) in patients with Pelizaeus-Merzbacher disease. We provide the first report of 13 junction sequences, which gives insight into underlying mechanisms. Although proximal breakpoints were highly variable, distal breakpoints tended to cluster around low-copy repeats (LCRs) (50% of distal breakpoints), and each duplication event appeared to be unique (100 kb to 4.6 Mb in size). Sequence analysis of the junctions revealed no large homologous regions between proximal and distal breakpoints. Most junctions had microhomology of 1-6 bases, and one had a 2-base insertion. Boundaries between single-copy and duplicated DNA were identical to the reference genomic sequence in all patients investigated. Taken together, these data suggest that the tandem duplications are formed by a coupled homologous and nonhomologous recombination mechanism. We suggest repair of a double-stranded break (DSB) by one-sided homologous strand invasion of a sister chromatid, followed by DNA synthesis and nonhomologous end joining with the other end of the break. This is in contrast to other genomic disorders that have recurrent rearrangements formed by nonallelic homologous recombination between LCRs. Interspersed repetitive elements (Alu elements, long interspersed nuclear elements, and long terminal repeats) were found at 18 of the 26 breakpoint sequences studied. No specific motif that may predispose to DSBs was revealed, but single or alternating tracts of purines and pyrimidines that may cause secondary structures were common. Analysis of the 2-Mb region susceptible to duplications identified proximal-specific repeats and distal LCRs in addition to the previously reported ones, suggesting that the unique genomic architecture may have a role in nonrecurrent rearrangements by promoting instability.
Collapse
Affiliation(s)
- Karen J. Woodward
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - Maria Cundall
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - Karen Sperle
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - Erik A. Sistermans
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - Mark Ross
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - Gareth Howell
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - Susan M. Gribble
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - Deborah C. Burford
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - Nigel P. Carter
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - Donald L. Hobson
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - James Y. Garbern
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - John Kamholz
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - Henry Heng
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - M. E. Hodes
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - Sue Malcolm
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| | - Grace M. Hobson
- Clinical and Molecular Genetics, Institute of Child Health, London; Western Diagnostic Pathology, Perth, Australia; Nemours Biomedical Research, Alfred I. duPont Hospital for Children, Nemours Children’s Clinic, Wilmington, DE; Department of Human Genetics, Radboud University, Nijmegen, The Netherlands; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom; Department of Neurology and Center for Molecular Medicine and Genetics, Wayne State University, Detroit; Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis; and Department of Pediatrics, Thomas Jefferson University, Philadelphia
| |
Collapse
|