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Poznanski RR, Cacha LA, Latif AZA, Salleh SH, Ali J, Yupapin P, Tuszynski JA, Ariff TM. Molecular orbitals of delocalized electron clouds in neuronal domains. Biosystems 2019; 183:103982. [PMID: 31195028 DOI: 10.1016/j.biosystems.2019.103982] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2019] [Revised: 06/07/2019] [Accepted: 06/07/2019] [Indexed: 02/08/2023]
Abstract
We have further developed the two-brains hypothesis as a form of complementarity (or complementary relationship) of endogenously induced weak magnetic fields in the electromagnetic brain. The locally induced magnetic field between electron magnetic dipole moments of delocalized electron clouds in neuronal domains is complementary to the exogenous electromagnetic waves created by the oscillating molecular dipoles in the electro-ionic brain. In this paper, we mathematically model the operation of the electromagnetic grid, especially in regard to the functional role of atomic orbitals of dipole-bound delocalized electrons. A quantum molecular dynamic approach under quantum equilibrium conditions is taken to illustrate phase differences between quasi-free electrons tethered to an oscillating molecular core. We use a simplified version of the many-body problem to analytically solve the macro-quantum wave equation (equivalent to the Kohn-Sham equation). The resultant solution for the mechanical angular momentum can be used to approximate the molecular orbital of the dipole-bound delocalized electrons. In addition to non-adiabatic motion of the molecular core, 'guidance waves' may contribute to the delocalized macro-quantum wave functions in generating nonlocal phase correlations. The intrinsic magnetic properties of the origins of the endogenous electromagnetic field are considered to be a nested hierarchy of electromagnetic fields that may also include electromagnetic patterns in three-dimensional space. The coupling between the two-brains may involve an 'anticipatory affect' based on the conceptualization of anticipation as potentiality, arising either from the macro-quantum potential energy or from the electrostatic effects of residual charges in the quantum and classical subsystems of the two-brains that occurs through partitioning of the potential energy of the combined quantum molecular dynamic system.
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Affiliation(s)
- Roman R Poznanski
- Faculty of Medicine, Universiti Sultan Zainal Abidin, 21300 Kuala Nerus, Terengganu, Malaysia.
| | - Lleuvelyn A Cacha
- Faculty of Medicine, Universiti Sultan Zainal Abidin, 21300 Kuala Nerus, Terengganu, Malaysia
| | - Ahmad Z A Latif
- Faculty of Medicine, Universiti Sultan Zainal Abidin, 21300 Kuala Nerus, Terengganu, Malaysia
| | - Sheik H Salleh
- Centre for Biomedical Engineering, Universiti Teknologi Malaysia, 81310, Johor Bahru, Malaysia
| | - Jalil Ali
- Laser Centre, Universiti Teknologi Malaysia, 81310, Johor Bahru, Malaysia
| | - Preecha Yupapin
- Computational Optics Research Group, Advanced Institute of Materials Science, Ton Duc Thang University, Ho Chi Minh City, Vietnam
| | - Jack A Tuszynski
- Department of Oncology, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, AB, T6G 2R7, Canada; Department of Mechanical and Aerospace Engineering, Politecnico di Torino, 10129, Torino, Italy
| | - Tengku M Ariff
- Faculty of Medicine, Universiti Sultan Zainal Abidin, 21300 Kuala Nerus, Terengganu, Malaysia
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Hu Z, Petoukhov SV, Petukhova ES. On symmetries, resonances and photonic crystals in morphogenesis. Biosystems 2018; 173:165-173. [PMID: 30222993 DOI: 10.1016/j.biosystems.2018.09.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2018] [Revised: 09/02/2018] [Accepted: 09/12/2018] [Indexed: 10/28/2022]
Abstract
Biological symmetries, theories of the morphogenetic field, resonant interactions and the role of photons in morphogenetic processes represented the main fields of interest of Lev Beloussov and his followers. This review article includes some results of our study on the important role of resonances and photonic crystals in genetic informatics. Mathematical formalisms of differential Riemannian geometry and tensor analysis are used for modeling inherited curved surfaces in biomorphology and for understanding conformal bio-symmetries connected with the networks of curvature lines of surfaces. Notions of a morpho-resonance field as one of variants of morphogenetic fields are discussed. The connection of the golden section with the Fibonacci matrix of growth used in morphogenetic models of phyllotaxis is shown. Photonic crystals are considered as important participants of organisation of molecular-genetic informatics.
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Affiliation(s)
- Zhengbing Hu
- School of Educational Information Technology, Central China Normal University, No. 152 Louyu Road, 430079, Wuhan, China
| | - Sergey V Petoukhov
- Mechanical Engineering Research Institute of Russian Academy of Sciences, Malyi Kharitonievsky pereulok, dom 4, Moscow, 101990, Russia.
| | - Elena S Petukhova
- Mechanical Engineering Research Institute of Russian Academy of Sciences, Malyi Kharitonievsky pereulok, dom 4, Moscow, 101990, Russia
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Vallverdú J, Castro O, Mayne R, Talanov M, Levin M, Baluška F, Gunji Y, Dussutour A, Zenil H, Adamatzky A. Slime mould: The fundamental mechanisms of biological cognition. Biosystems 2018; 165:57-70. [DOI: 10.1016/j.biosystems.2017.12.011] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Revised: 12/18/2017] [Accepted: 12/20/2017] [Indexed: 01/27/2023]
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Igamberdiev AU, Shklovskiy-Kordi NE. The quantum basis of spatiotemporality in perception and consciousness. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2017; 130:15-25. [PMID: 28232245 DOI: 10.1016/j.pbiomolbio.2017.02.008] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Accepted: 02/16/2017] [Indexed: 12/21/2022]
Abstract
Living systems inhabit the area of the world which is shaped by the predictable space-time of physical objects and forces that can be incorporated into their perception pattern. The process of selecting a "habitable" space-time is the internal quantum measurement in which living systems become embedded into the environment that supports their living state. This means that living organisms choose a coordinate system in which the influence of measurement is minimal. We discuss specific roles of biological macromolecules, in particular of the cytoskeleton, in shaping perception patterns formed in the internal measurement process. Operation of neuron is based on the transmission of signals via cytoskeleton where the digital output is generated that can be decoded through a reflective action of the perceiving agent. It is concluded that the principle of optimality in biology as formulated by Liberman et al. (BioSystems 22, 135-154, 1989) is related to the establishment of spatiotemporal patterns that are maximally predictable and can hold the living state for a prolonged time. This is achieved by the selection of a habitable space approximated to the conditions described by classical physics.
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Affiliation(s)
- Abir U Igamberdiev
- Department of Biology, Memorial University of Newfoundland, St. John's, NL A1B 3X9, Canada.
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5
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Igamberdiev AU, Shklovskiy-Kordi NE. Computational power and generative capacity of genetic systems. Biosystems 2016; 142-143:1-8. [DOI: 10.1016/j.biosystems.2016.01.003] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2015] [Revised: 01/25/2016] [Accepted: 01/27/2016] [Indexed: 01/01/2023]
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Thaheld FH. Can the Stark–Einstein law resolve the measurement problem from an animate perspective? Biosystems 2015; 135:50-4. [DOI: 10.1016/j.biosystems.2015.07.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2015] [Revised: 07/08/2015] [Accepted: 07/10/2015] [Indexed: 10/23/2022]
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Uragami D, Takahashi T, Matsuo Y. Cognitively inspired reinforcement learning architecture and its application to giant-swing motion control. Biosystems 2013; 116:1-9. [PMID: 24296286 DOI: 10.1016/j.biosystems.2013.11.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2013] [Revised: 11/20/2013] [Accepted: 11/21/2013] [Indexed: 10/25/2022]
Abstract
Many algorithms and methods in artificial intelligence or machine learning were inspired by human cognition. As a mechanism to handle the exploration-exploitation dilemma in reinforcement learning, the loosely symmetric (LS) value function that models causal intuition of humans was proposed (Shinohara et al., 2007). While LS shows the highest correlation with causal induction by humans, it has been reported that it effectively works in multi-armed bandit problems that form the simplest class of tasks representing the dilemma. However, the scope of application of LS was limited to the reinforcement learning problems that have K actions with only one state (K-armed bandit problems). This study proposes LS-Q learning architecture that can deal with general reinforcement learning tasks with multiple states and delayed reward. We tested the learning performance of the new architecture in giant-swing robot motion learning, where uncertainty and unknown-ness of the environment is huge. In the test, the help of ready-made internal models or functional approximation of the state space were not given. The simulations showed that while the ordinary Q-learning agent does not reach giant-swing motion because of stagnant loops (local optima with low rewards), LS-Q escapes such loops and acquires giant-swing. It is confirmed that the smaller number of states is, in other words, the more coarse-grained the division of states and the more incomplete the state observation is, the better LS-Q performs in comparison with Q-learning. We also showed that the high performance of LS-Q depends comparatively little on parameter tuning and learning time. This suggests that the proposed method inspired by human cognition works adaptively in real environments.
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Affiliation(s)
- Daisuke Uragami
- School of Computer Science, Tokyo University of Technology, Katakuramachi, Hachioji City, Tokyo 192-0982, Japan.
| | - Tatsuji Takahashi
- School of Science and Technology, Tokyo Denki University, Hatoyama, Hiki, Saitama 350-0394, Japan.
| | - Yoshiki Matsuo
- School of Computer Science, Tokyo University of Technology, Katakuramachi, Hachioji City, Tokyo 192-0982, Japan.
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Simeonov PL, Gomez-Ramirez J, Siregar P. On some recent insights in Integral Biomathics. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2013; 113:216-28. [PMID: 23806283 DOI: 10.1016/j.pbiomolbio.2013.06.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
This paper summarizes the results in Integral Biomathics obtained to this moment and provides an outlook for future research in the field.
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Takahashi T, Gunji YP. Symmetrizing object and meta levels organizes thinking. Biosystems 2011; 107:95-105. [PMID: 22100872 DOI: 10.1016/j.biosystems.2011.10.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2011] [Revised: 10/04/2011] [Accepted: 10/05/2011] [Indexed: 11/15/2022]
Abstract
We present a single non-cellular finite automaton model first shown to exhibit self-organizing behavior with intermittency and criticality, through a self-referential process. We propose a method to make self-referential contradiction a dynamic process of interaction with the selves in first person and third person description. The process represents thinking as inner dialogue with the self in second person. The dynamic effect of the rewrite shows characters proper to internal measurement, disequilibration by equilibration and transfer of inconsistency to the neighborhood by local resolution of the inconsistency. As the result, the advent of contradiction is postponed by the rewrite. The duality of internal measurement subject prevents inner dialogue in second person from lapsing into monologue. Criticality of thinking process is expressed. A probabilistic interpretation of non-determinacy weakening oracle is the key.
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Affiliation(s)
- Tatsuji Takahashi
- School of Science and Technology, Tokyo Denki University, Hiki, Saitama 350-0394, Japan.
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Mershin A, Kolomenski AA, Schuessler HA, Nanopoulos DV. Tubulin dipole moment, dielectric constant and quantum behavior: computer simulations, experimental results and suggestions. Biosystems 2005; 77:73-85. [PMID: 15527947 DOI: 10.1016/j.biosystems.2004.04.003] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2004] [Revised: 04/23/2004] [Accepted: 04/26/2004] [Indexed: 10/26/2022]
Abstract
We used computer simulation to calculate the electric dipole moments of the alpha- and beta-tubulin monomers and dimer and found those to be |p(alpha)| = 552D, |p(beta)| = 1193D and |p(alphabeta)| = 1740D, respectively. Independent surface plasmon resonance (SPR) and refractometry measurements of the high-frequency dielectric constant and polarizability strongly corroborated our previous SPR-derived results, giving Deltan/Deltac approximately 1.800 x 10(-3)ml/mg. The refractive index of tubulin was measured to be n(tub) approximately 2.90 and the high-frequency tubulin dielectric constant k(tub) approximately 8.41, while the high-frequency polarizability was found to be alpha(tub) approximately 2.1 x 10(-33)C m(2)/V. Methods for the experimental determination of the low-frequency p are explored, as well as ways to test the often conjectured quantum coherence and entanglement properties of tubulin. Biobits, bioqubits and other applications to bioelectronics are discussed.
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Affiliation(s)
- A Mershin
- Department of Physics, Texas A&M University, College Station, TX 77843-4242, USA.
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Thaheld FH. Does consciousness really collapse the wave function? A possible objective biophysical resolution of the measurement problem. Biosystems 2005; 81:113-24. [PMID: 16009281 DOI: 10.1016/j.biosystems.2005.03.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2004] [Revised: 03/03/2005] [Accepted: 03/04/2005] [Indexed: 11/28/2022]
Abstract
An analysis has been performed of the theories and postulates advanced by von Neumann, London and Bauer, and Wigner, concerning the role that consciousness might play in the collapse of the wave function, which has become known as the measurement problem. This reveals that an error may have been made by them in the area of biology and its interface with quantum mechanics when they called for the reduction of any superposition states in the brain through the mind or consciousness. Many years later Wigner changed his mind to reflect a simpler and more realistic objective position which appears to offer a way to resolve this issue. The argument is therefore made that the wave function of any superposed photon state or states is always objectively and stochastically changed within the complex architecture of the eye in a continuous linear process initially for most of the superposed photons, followed by a discontinuous nonlinear collapse process later for any remaining superposed photons, thereby guaranteeing that only final, measured information is presented to the brain, mind or consciousness. An experiment to be conducted in the near future may enable us to simultaneously resolve the measurement problem and also determine if the linear nature of quantum mechanics is violated by the perceptual process.
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Thaheld FH. An interdisciplinary approach to certain fundamental issues in the fields of physics and biology: towards a unified theory. Biosystems 2005; 80:41-56. [PMID: 15740834 DOI: 10.1016/j.biosystems.2004.10.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2004] [Revised: 10/06/2004] [Accepted: 10/07/2004] [Indexed: 11/29/2022]
Abstract
Recent experiments appear to have revealed the possibility of the existence of quantum entanglement between spatially separated human subjects. In addition, a similar condition might exist between basins containing human neurons adhering to printed circuit boards. In both instances, preliminary data indicates what appear to be non-local correlations between brain electrical activities in the case of the human subjects and also non-local correlations between neuronal basin electrical activities, implying entanglement at the macroscopic level. If the ongoing expanded research and the analysis of same continues to support this hypothesis, it may then make it possible to simultaneously address some of the fundamental problems facing us in both physics and biology through the adoption of an interdisciplinary empirical approach based on Bell's experimental philosophy, with the goal of unifying these two fields.
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Balázs A. Is there a "molecular Nirvana Principle"? Towards a unified resolutional model of the biological symbol-matter dichotomy. Biosystems 2004; 77:1-10. [PMID: 15527940 DOI: 10.1016/j.biosystems.2004.02.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2003] [Revised: 02/06/2004] [Accepted: 02/09/2004] [Indexed: 11/19/2022]
Abstract
In the present paper, the metapsychological "Nirvana Principle" is investigated evolutionarily at the earliest forms of life in a highly tentative way. A corresponding "molecular Nirvana Principle" is proposed, where the recent suggestions of the "internal measurement" biophysical quantum-molecular research programme of modern quantum biology are introduced, in relation to the former metapsychological theory, conceived to be valid in the entire realm of living systems (just as it was intended by the original author). By an appropriate introduction of a special primordeal dynamical time inversion symmetry breaking, originating in a premeval self-measurement in a composite nucleic acid-protein system, a special internal symmetry restoration time series is defined. In this way, a strictly physically defined self-identity ("molecular Nirvana," special physical symmetry restored) is derived, which is put equal to the quantum physical equivalent and root of the goals of evolutionarily higher level fundamental drives (the "Nirvana Principle"). It is shown that it is a natural requirement that the following internal regressive time (-reversal) physical molecular relations (and so the ultimate time symmetry) is mapped onto space, as is also suggested by some symbol-theoretical propositions.
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Affiliation(s)
- András Balázs
- Department of Biological Physics, Eötvös Lóránd University, H-1117 Budapest, Pázmány sétány 1, Hungary
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Thaheld FH. A method to explore the possibility of nonlocal correlations between brain electrical activities of two spatially separated animal subjects. Biosystems 2004; 73:205-16. [PMID: 15026195 DOI: 10.1016/j.biosystems.2004.01.001] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2003] [Revised: 01/15/2004] [Accepted: 01/16/2004] [Indexed: 12/01/2022]
Abstract
It now appears possible to design an experiment which might reveal whether nonlocal correlations exist between brain electrical activities of spatially separated animal subjects, with initial emphasis on primates and dolphins. This would have the advantage of being based upon research presently being conducted at the University of Washington-Bastyr University and the University of Freiburg, which appears to reveal that a visual evoked potential elicited in the brain of one human subject via patterned photostimulation, can induce a nonlocal transferred potential in the brain of a second human subject, without any apparent classical neural or electromagnetic intervention, since both subjects are in Faraday chambers. An observation of nonlocality may also make it possible to investigate if consciousness or mental experiences exist in various nonhuman animal subjects.
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Thaheld F. Biological nonlocality and the mind-brain interaction problem: comments on a new empirical approach. Biosystems 2003; 70:35-41. [PMID: 12753935 DOI: 10.1016/s0303-2647(03)00028-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Up to now, we have been faced with an age old fundamental dilemma posed by the mind-brain interaction problem, i.e. how is it that the mind which is subjective and immaterial, can interact with the brain which is objective and material? Analysis of recent experiments appears to indicate that quantum mechanics may have a role to play in the resolution of the mind-brain interaction problem in the form of biological entanglement and nonlocality. In addition to this analysis, when coupled with ongoing and proposed experiments, may help us to simultaneously resolve related issues such as whether mental events can initiate neural events, the transference of conscious subjective experience, the measurement problem and the binding problem.
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Affiliation(s)
- Fred Thaheld
- 240 Natoma Station Dr. #76, Folsom, CA 95630, USA.
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