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Zhao W, Liu M, Qin Y, Bing H, Zhang F, Zhao G. Characterization and functional of four mutants of hydroxy fatty acid dehydrogenase from Lactobacillus plantarum p-8. FEMS Microbiol Lett 2022; 369:6633657. [PMID: 35798009 DOI: 10.1093/femsle/fnac060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 12/16/2021] [Revised: 04/25/2022] [Accepted: 07/05/2022] [Indexed: 11/14/2022] Open
Abstract
In this study, the hydroxy fatty acid dehydrogenase CLA-DH from Lactobacillus plantarum p-8 and its four mutant variants were expressed in Escherichia coli Rosetta (DE3). UV spectrophotometry was employed to verify the catalytic power of the purified CLA-DH to convert ricinoleic acid into 12-oxo-cis-9-octadecenoic acid in the presence of oxidized nicotinamide adenine dinucleotide (NAD+). The optimum reaction temperature for CLA-DH was 45°C, with a maintained stability between 20°C and 40°C. The optimal pH for CLA-DH catalytic activity was 6.0-7.0, with a maintained stability at a pH range of 6.0-8.0. In addition, Fe3+ promoted enzyme activity, whereas Cu2+, Zn2+, and Fe2+ inhibited enzyme activity (P < 0.05). The Km, Vmax, Kcat, and Kcat/Km of CLA-DH were determined as 2.19 ± 0.34 μM, 2.06 ± 0.28 μM min-1, 2.00 ± 0.27 min-1, and 0.92 ± 0.02 min-1μM-1, respectively. Site-directed mutagenesis and molecular dynamics simulations demonstrated that both Tyr156 and Ser143 residues play significant roles in the catalysis of CLA-DH, and its solubility is affected by Lys160 and Asp63. Moreover, Gas chromatography determined that recombinant CLA-DH could be successfully applied to Conjugated linoleic acids production.
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Affiliation(s)
- Wei Zhao
- College of Life Sciences, Inner Mongolia Agricultural University, 29 Erdos Street, Hohhot 010011, China.,College of Food Science, Shanxi Normal University, 339 Taiyu Road, Taiyuan 030031, China
| | - Meiqi Liu
- College of Life Sciences, Inner Mongolia Agricultural University, 29 Erdos Street, Hohhot 010011, China
| | - Yali Qin
- College of Life Sciences, Inner Mongolia Agricultural University, 29 Erdos Street, Hohhot 010011, China
| | - Han Bing
- College of Life Sciences, Inner Mongolia Agricultural University, 29 Erdos Street, Hohhot 010011, China
| | - Feng Zhang
- College of Life Sciences, Inner Mongolia Agricultural University, 29 Erdos Street, Hohhot 010011, China
| | - Guofen Zhao
- College of Life Sciences, Inner Mongolia Agricultural University, 29 Erdos Street, Hohhot 010011, China
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Thompson MP, Turner NJ. Two-Enzyme Hydrogen-Borrowing Amination of Alcohols Enabled by a Cofactor-Switched Alcohol Dehydrogenase. ChemCatChem 2017. [DOI: 10.1002/cctc.201701092] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 12/25/2022]
Affiliation(s)
- Matthew P. Thompson
- School of Chemistry, Manchester Institute of Biotechnology; The University of Manchester; 131 Princess Street Manchester M1 7DN UK
| | - Nicholas J. Turner
- School of Chemistry, Manchester Institute of Biotechnology; The University of Manchester; 131 Princess Street Manchester M1 7DN UK
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Rodríguez C, Borzęcka W, Sattler JH, Kroutil W, Lavandera I, Gotor V. Steric vs. electronic effects in the Lactobacillus brevis ADH-catalyzed bioreduction of ketones. Org Biomol Chem 2014; 12:673-81. [DOI: 10.1039/c3ob42057d] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/21/2022]
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Yamamoto H, Kudoh M. Novel chiral tool, (R)-2-octanol dehydrogenase, from Pichia finlandica: purification, gene cloning, and application for optically active α-haloalcohols. Appl Microbiol Biotechnol 2012; 97:8087-96. [PMID: 23274959 DOI: 10.1007/s00253-012-4643-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 08/21/2012] [Revised: 12/04/2012] [Accepted: 12/06/2012] [Indexed: 11/25/2022]
Abstract
A novel enantioselective alcohol dehydrogenase, (R)-2-octanol dehydrogenase (PfODH), was discovered among methylotrophic microorganisms. The enzyme was purified from Pichia finlandica and characterized. The molecular mass of the enzyme was estimated to be 83,000 and 30,000 by gel filtration and sodium dodecyl sulfate-polyacrylamide gel electrophoresis, respectively. The enzyme was an NAD(+)-dependent secondary alcohol dehydrogenase and showed a strict enantioselectivity, very broad substrate specificity, and high tolerance to SH reagents. A gene-encoding PfODH was cloned and sequenced. The gene consisted of 765 nucleotides, coding polypeptides of 254 amino acids. The gene was singly expressed and coexpressed together with a formate dehydrogenase as an NADH regenerator in an Escherichia coli. Ethyl (S)-4-chloro-3-hydroxybutanoate and (S)-2-chloro-1-phenylethanol were synthesized using a whole-cell biocatalyst in more than 99 % optical purity.
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Affiliation(s)
- Hiroaki Yamamoto
- Green Product Development Center, R&D Management, Daicel Corporation, 1-1 Shinko-cho, Myoko, Niigata, 944-8550, Japan.
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Relationship between Catalytic Asymmetric Reduction Ability of Carbonyl Reductase of <I>Rhodobacter sphaeroides</I> and Substrate Structure. CHINESE JOURNAL OF CATALYSIS 2010. [DOI: 10.3724/sp.j.1088.2010.90801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Academic Contribution Register] [Indexed: 11/25/2022]
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Musa M, Lott N, Laivenieks M, Watanabe L, Vieille C, Phillips R. A Single Point Mutation Reverses the Enantiopreference ofThermoanaerobacter ethanolicusSecondary Alcohol Dehydrogenase. ChemCatChem 2009. [DOI: 10.1002/cctc.200900033] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/08/2022]
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Wallner SR, Lavandera I, Mayer SF, Öhrlein R, Hafner A, Edegger K, Faber K, Kroutil W. Stereoselective anti-Prelog reduction of ketones by whole cells of Comamonas testosteroni in a ‘substrate-coupled’ approach. ACTA ACUST UNITED AC 2008. [DOI: 10.1016/j.molcatb.2008.02.009] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/28/2022]
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9
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Lavandera I, Höller B, Kern A, Ellmer U, Glieder A, de Wildeman S, Kroutil W. Asymmetric anti-Prelog reduction of ketones catalysed by Paracoccus pantotrophus and Comamonas sp. cells via hydrogen transfer. ACTA ACUST UNITED AC 2008. [DOI: 10.1016/j.tetasy.2008.08.005] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 12/01/2022]
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Lavandera I, Kern A, Ferreira-Silva B, Glieder A, de Wildeman S, Kroutil W. Stereoselective Bioreduction of Bulky-Bulky Ketones by a Novel ADH from Ralstonia sp. J Org Chem 2008; 73:6003-5. [DOI: 10.1021/jo800849d] [Citation(s) in RCA: 105] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/29/2022]
Affiliation(s)
- Iván Lavandera
- Research Centre Applied Biocatalysis c/o Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria, Research Centre Applied Biocatalysis c/o Institute for Molecular Biotechnology, Graz University of Technology, Petersgasse 14/2, 8010 Graz, Austria, Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria, and DSM Pharmaceutical Products, P.O. Box 18, 6160, MD Geleen, The Netherlands
| | - Alexander Kern
- Research Centre Applied Biocatalysis c/o Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria, Research Centre Applied Biocatalysis c/o Institute for Molecular Biotechnology, Graz University of Technology, Petersgasse 14/2, 8010 Graz, Austria, Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria, and DSM Pharmaceutical Products, P.O. Box 18, 6160, MD Geleen, The Netherlands
| | - Bianca Ferreira-Silva
- Research Centre Applied Biocatalysis c/o Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria, Research Centre Applied Biocatalysis c/o Institute for Molecular Biotechnology, Graz University of Technology, Petersgasse 14/2, 8010 Graz, Austria, Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria, and DSM Pharmaceutical Products, P.O. Box 18, 6160, MD Geleen, The Netherlands
| | - Anton Glieder
- Research Centre Applied Biocatalysis c/o Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria, Research Centre Applied Biocatalysis c/o Institute for Molecular Biotechnology, Graz University of Technology, Petersgasse 14/2, 8010 Graz, Austria, Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria, and DSM Pharmaceutical Products, P.O. Box 18, 6160, MD Geleen, The Netherlands
| | - Stefaan de Wildeman
- Research Centre Applied Biocatalysis c/o Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria, Research Centre Applied Biocatalysis c/o Institute for Molecular Biotechnology, Graz University of Technology, Petersgasse 14/2, 8010 Graz, Austria, Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria, and DSM Pharmaceutical Products, P.O. Box 18, 6160, MD Geleen, The Netherlands
| | - Wolfgang Kroutil
- Research Centre Applied Biocatalysis c/o Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria, Research Centre Applied Biocatalysis c/o Institute for Molecular Biotechnology, Graz University of Technology, Petersgasse 14/2, 8010 Graz, Austria, Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria, and DSM Pharmaceutical Products, P.O. Box 18, 6160, MD Geleen, The Netherlands
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Lavandera I, Kern A, Schaffenberger M, Gross J, Glieder A, de Wildeman S, Kroutil W. An exceptionally DMSO-tolerant alcohol dehydrogenase for the stereoselective reduction of ketones. CHEMSUSCHEM 2008; 1:431-436. [PMID: 18702138 DOI: 10.1002/cssc.200800032] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Academic Contribution Register] [Indexed: 05/26/2023]
Abstract
A novel short-chain alcohol dehydrogenase from Paracoccus pantotrophus DSM 11072, which is applicable for hydrogen transfer, has been identified, cloned, and overexpressed in E. coli. The enzyme stereoselectively reduces several ketones in a sustainable substrate-coupled approach using 2-propanol (5% v/v) as hydrogen donor. The enzyme maintained its activity in organic co-solvents in biphasic as well as monophasic systems and was even active in micro-aqueous media (1% v/v aqueous buffer). In general, a higher conversion was observed at higher log P values of the solvent, however, DMSO, which exhibits the lowest log P value of all solvents investigated, was not only tolerated but led to a higher conversion and relative activity (110-210%). For example, the conversion after 24 h in 15% v/v DMSO was double that for the reaction performed in buffer. This tolerance to DMSO may be attributed to the ability of the wild-type strain to adapt and grow in media with high sulfur content.
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Affiliation(s)
- Iván Lavandera
- Research Centre Applied Biocatalysis c/o Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria
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Gruber CC, Nestl BM, Gross J, Hildebrandt P, Bornscheuer UT, Faber K, Kroutil W. Emulation of Racemase Activity by Employing a Pair of Stereocomplementary Biocatalysts. Chemistry 2007; 13:8271-6. [PMID: 17639544 DOI: 10.1002/chem.200700528] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/09/2022]
Abstract
Racemization is the key step to turn a kinetic resolution process into dynamic resolution. A general strategy for racemization under mild reaction conditions by employing stereoselective biocatalysts is presented, in which racemization is achieved by employing a pair of stereocomplementary biocatalysts that reversibly interconvert an sp3 to a sp2 center. The formal interconversion of the enantiomers proceeds via a prochiral sp2 intermediate the formation of which is catalyzed either by two stereocomplementary enzymes or by a single enzyme with low stereoselectivity. By choosing appropriate reaction conditions, the amount of the prochiral intermediate is kept to a minimum. This general strategy, which is applicable to redox enzymes (e.g., by acting on R2CHOH and R2CHNHR groups) and lyase-catalyzed addition-elimination reactions, was proven for the racemization of secondary alcohols by employing alcohol dehydrogenases. Thus, enantiopure chiral alcohols were used as model substrates and were racemized either with highly stereoselective biocatalysts or by using (rarely found) non-selective enzymes.
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Affiliation(s)
- Christian C Gruber
- Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria
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de Gonzalo G, Lavandera I, Durchschein K, Wurm D, Faber K, Kroutil W. Asymmetric biocatalytic reduction of ketones using hydroxy-functionalised water-miscible ionic liquids as solvents. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.tetasy.2007.10.010] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 10/22/2022]
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Yang Y, Zhu D, Piegat TJ, Hua L. Enzymatic ketone reduction: mapping the substrate profile of a short-chain alcohol dehydrogenase (YMR226c) from Saccharomyces cerevisiae. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.tetasy.2007.08.008] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 10/22/2022]
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15
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Edegger K, Stampfer W, Seisser B, Faber K, Mayer SF, Oehrlein R, Hafner A, Kroutil W. Regio- and Stereoselective Reduction of Diketones and Oxidation of Diols by Biocatalytic Hydrogen Transfer. European J Org Chem 2006. [DOI: 10.1002/ejoc.200500839] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/10/2022]
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16
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Edegger K, Gruber C, Faber K, Hafner A, Kroutil W. Optimization of Reaction Parameters and Cultivation Conditions for Biocatalytic Hydrogen Transfer Employing Overexpressed ADH-‘A’ fromRhodococcus ruber DSM 44541 inE. coli. Eng Life Sci 2006. [DOI: 10.1002/elsc.200620902] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/07/2022] Open
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17
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Edegger K, Gruber CC, Poessl TM, Wallner SR, Lavandera I, Faber K, Niehaus F, Eck J, Oehrlein R, Hafner A, Kroutil W. Biocatalytic deuterium- and hydrogen-transfer using over-expressed ADH-‘A’: enhanced stereoselectivity and2H-labeled chiral alcohols. Chem Commun (Camb) 2006:2402-4. [PMID: 16733594 DOI: 10.1039/b602487d] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/21/2022]
Abstract
Employing the over-expressed highly organic solvent tolerant alcohol dehydrogenase ADH-'A' from Rhodococcus ruber DSM 44541, versatile building blocks, which were not accessible by the wild type catalyst, were obtained in > 99% e.e.; furthermore, employing d8-2-propanol as deuterium source, stereoselective biocatalytic deuterium transfer was made feasible to furnish enantiopure deuterium labeled sec-alcohols on a preparative scale employing a single enzyme.
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Affiliation(s)
- Klaus Edegger
- Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, A-8010, Graz, Austria
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Poessl T, Kosjek B, Ellmer U, Gruber C, Edegger K, Faber K, Hildebrandt P, Bornscheuer U, Kroutil W. Non-Racemic Halohydrinsvia Biocatalytic Hydrogen-Transfer Reduction of Halo-Ketones and One-Pot Cascade Reaction to Enantiopure Epoxides. Adv Synth Catal 2005. [DOI: 10.1002/adsc.200505094] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/08/2022]
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Kroutil W, Mang H, Edegger K, Faber K. Recent advances in the biocatalytic reduction of ketones and oxidation of sec -alcohols. Curr Opin Chem Biol 2004; 8:120-6. [PMID: 15062771 DOI: 10.1016/j.cbpa.2004.02.005] [Citation(s) in RCA: 299] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/22/2022]
Abstract
To improve the efficiency and applicability of biocatalytic redox-reactions for asymmetric ketone-reduction and enantioselective alcohol-oxidation catalyzed by nicotinamide-dependent dehydrogenases/reductases, several achievements for cofactor-recycling have been made during the last two years. First, the use of hydrogenases for NADPH recycling in a two enzyme system. Second, preparative transformations with alcohol dehydrogenases coupled with NADH oxidases for NAD+/NADP+ recycling. Third, an exceptional chemo-stable alcohol dehydrogenase can efficiently use i-propanol and acetone as cosubstrates for reduction and oxidation, respectively, in a single-enzyme system. Novel carbonyl reductases and dehydrogenases derived from plant cells are particularly suited for sterically demanding substrates.
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Affiliation(s)
- Wolfgang Kroutil
- Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Austria
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Kosjek B, Stampfer W, Pogorevc M, Goessler W, Faber K, Kroutil W. Purification and characterization of a chemotolerant alcohol dehydrogenase applicable to coupled redox reactions. Biotechnol Bioeng 2004; 86:55-62. [PMID: 15007841 DOI: 10.1002/bit.20004] [Citation(s) in RCA: 91] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/12/2022]
Abstract
The purification and characterization of an organic solvent tolerant, NADH-dependent medium-chain secondary alcohol dehydrogenase (denoted sec-ADH "A") from Rhodococcus ruber DSM 44541 is reported. The enzyme can withstand elevated concentrations of organic solvents, such as acetone (up to 50% v/v) and 2-propanol (up to 80% v/v). Thus, it is ideally suited for the preparative-scale enantioselective oxidation of sec-alcohol and the asymmetric reduction of ketones, using acetone and 2-propanol, respectively, as cosubstrates for cofactor-regeneration via a coupled-substrate approach. The homodimeric protein was found to bear tightly bound zinc and displayed a molecular mass of 38 kDa per subunit as determined by SDS gel electrophoresis. The optimal temperature ranged from 30-50 degrees C and the half-life at 50 degrees C was 35 h. In addition, excellent storage stability was found. The pH optimum for reduction is pH 6.5; pH 9.0 is preferred for oxidation. The enzyme followed a sequential reaction mechanism. The substrates are medium chain sec-alcohols or (omega-1)-ketones; primary alcohols or aldehydes are not accepted.
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Affiliation(s)
- Birgit Kosjek
- Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, A-8010 Graz, Austria
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Abstract
Many European chemical industries are in a phase of reorganization resulting in a general opening towards life sciences. Traditional chemical markets are served increasingly with products derived from bioprocesses or hybrid chemical/biocatalytic processes. Biocatalytic steps are already being used to produce a wide range of products, including agricultural chemicals, organics, drugs and plastic materials, to name but a few. Apart from the rapidly growing number of commercialized bioprocesses, a partial survey of exploratory activities points to future applications of enzymes in the European chemical industry, which will bring new products and technologies and, in some cases, replace traditional syntheses.
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Affiliation(s)
- Andreas Schmid
- Institute of Biotechnology, Swiss Federal Institute of Technology, Zurich, Hoenggerberg, CH-8093, Zurich, Switzerland.
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