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Wied P, Carraro F, Bolivar JM, Doonan CJ, Falcaro P, Nidetzky B. Combining a Genetically Engineered Oxidase with Hydrogen-Bonded Organic Frameworks (HOFs) for Highly Efficient Biocomposites. Angew Chem Int Ed Engl 2022; 61:e202117345. [PMID: 35038217 PMCID: PMC9305891 DOI: 10.1002/anie.202117345] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Indexed: 12/16/2022]
Abstract
Enzymes incorporated into hydrogen-bonded organic frameworks (HOFs) via bottom-up synthesis are promising biocomposites for applications in catalysis and sensing. Here, we explored synthetic incorporation of d-amino acid oxidase (DAAO) with the metal-free tetraamidine/tetracarboxylate-based BioHOF-1 in water. N-terminal enzyme fusion with the positively charged module Zbasic2 strongly boosted the loading (2.5-fold; ≈500 mg enzyme gmaterial-1 ) and the specific activity (6.5-fold; 23 U mg-1 ). The DAAO@BioHOF-1 composites showed superior activity with respect to every reported carrier for the same enzyme and excellent stability during catalyst recycling. Further, extension to other enzymes, including cytochrome P450 BM3 (used in the production of high-value oxyfunctionalized compounds), points to the versatility of genetic engineering as a strategy for the preparation of biohybrid systems with unprecedented properties.
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Affiliation(s)
- Peter Wied
- Institute of Biotechnology and Biochemical EngineeringGraz University of TechnologyPetersgasse 12/18010GrazAustria
- Institute of Physical and Theoretical ChemistryGraz University of TechnologyStremayrgasse 9/Z28010GrazAustria
| | - Francesco Carraro
- Institute of Physical and Theoretical ChemistryGraz University of TechnologyStremayrgasse 9/Z28010GrazAustria
| | - Juan M. Bolivar
- Institute of Biotechnology and Biochemical EngineeringGraz University of TechnologyPetersgasse 12/18010GrazAustria
| | - Christian J. Doonan
- Department of ChemistryThe University of AdelaideAdelaideSouth Australia 5005Australia
| | - Paolo Falcaro
- Institute of Physical and Theoretical ChemistryGraz University of TechnologyStremayrgasse 9/Z28010GrazAustria
| | - Bernd Nidetzky
- Institute of Biotechnology and Biochemical EngineeringGraz University of TechnologyPetersgasse 12/18010GrazAustria
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2
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Wied P, Carraro F, Bolivar JM, Doonan CJ, Falcaro P, Nidetzky B. Combining Genetically Engineered Oxidase with Hydrogen Bonded Organic Framework (HOF) for Highly Efficient Biocomposites. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202117345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Peter Wied
- Graz University of Technology: Technische Universitat Graz Biotechnology and Biochemical Engineering AUSTRIA
| | - Francesco Carraro
- Graz University of Technology: Technische Universitat Graz Physical Chemistry AUSTRIA
| | - Juan M. Bolivar
- Complutense University of Madrid: Universidad Complutense de Madrid Biochemical Engineering SPAIN
| | - Christian J. Doonan
- University of Adelaide Press: The University of Adelaide Chemistry AUSTRALIA
| | - Paolo Falcaro
- Graz University of Technology: Technische Universitat Graz Physical Chemistry AUSTRIA
| | - Bernd Nidetzky
- Biotechnology and Biochemical Engineering Graz University of Technology Petersgasse 12 8010 Graz AUSTRIA
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3
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Enzyme co-immobilization: Always the biocatalyst designers' choice…or not? Biotechnol Adv 2021; 51:107584. [DOI: 10.1016/j.biotechadv.2020.107584] [Citation(s) in RCA: 78] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 06/24/2020] [Accepted: 06/24/2020] [Indexed: 01/08/2023]
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Liang W, Wied P, Carraro F, Sumby CJ, Nidetzky B, Tsung CK, Falcaro P, Doonan CJ. Metal–Organic Framework-Based Enzyme Biocomposites. Chem Rev 2021; 121:1077-1129. [DOI: 10.1021/acs.chemrev.0c01029] [Citation(s) in RCA: 166] [Impact Index Per Article: 55.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Weibin Liang
- Department of Chemistry and Centre for Advanced Nanomaterials, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Peter Wied
- Institute of Physical and Theoretical Chemistry, Graz University of Technology, Stremayrgasse 9, 8010 Graz, Austria
| | - Francesco Carraro
- Institute of Physical and Theoretical Chemistry, Graz University of Technology, Stremayrgasse 9, 8010 Graz, Austria
| | - Christopher J. Sumby
- Department of Chemistry and Centre for Advanced Nanomaterials, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Bernd Nidetzky
- Institute of Biotechnology and Biochemical Engineering, Graz University of Technology, Petersgasse 12/1, 8010 Graz, Austria
| | - Chia-Kuang Tsung
- Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, Massachusetts 02467, United States
| | - Paolo Falcaro
- Institute of Physical and Theoretical Chemistry, Graz University of Technology, Stremayrgasse 9, 8010 Graz, Austria
| | - Christian J. Doonan
- Department of Chemistry and Centre for Advanced Nanomaterials, The University of Adelaide, Adelaide, South Australia 5005, Australia
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Benítez-Mateos AI, Nidetzky B, Bolivar JM, López-Gallego F. Single-Particle Studies to Advance the Characterization of Heterogeneous Biocatalysts. ChemCatChem 2018. [DOI: 10.1002/cctc.201701590] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Ana I. Benítez-Mateos
- Heterogeneous Biocatalysis Group; CIC BiomaGUNE; Paseo Miramon 182 San Sebastian-Donostia 20014 Spain
| | - Bernd Nidetzky
- Institute of Biotechnology and Biochemical Engineering; Graz University of Technology, NAWI Graz; Petersgasse 12 8010 Graz Austria
- Austrian Centre of Industrial Biotechnology; Petersgasse 14 8010 Graz Austria
| | - Juan M. Bolivar
- Institute of Biotechnology and Biochemical Engineering; Graz University of Technology, NAWI Graz; Petersgasse 12 8010 Graz Austria
| | - Fernando López-Gallego
- Heterogeneous Biocatalysis Group; CIC BiomaGUNE; Paseo Miramon 182 San Sebastian-Donostia 20014 Spain
- IKERBASQUE; Basque Foundation for Science; Bilbao Spain
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Zaak H, Siar EH, Kornecki JF, Fernandez-Lopez L, Pedrero SG, Virgen-Ortíz JJ, Fernandez-Lafuente R. Effect of immobilization rate and enzyme crowding on enzyme stability under different conditions. The case of lipase from Thermomyces lanuginosus immobilized on octyl agarose beads. Process Biochem 2017. [DOI: 10.1016/j.procbio.2017.02.024] [Citation(s) in RCA: 100] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Effect of protein load on stability of immobilized enzymes. Enzyme Microb Technol 2017; 98:18-25. [DOI: 10.1016/j.enzmictec.2016.12.002] [Citation(s) in RCA: 155] [Impact Index Per Article: 22.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2016] [Revised: 12/12/2016] [Accepted: 12/15/2016] [Indexed: 12/24/2022]
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8
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Bolivar JM, Eisl I, Nidetzky B. Advanced characterization of immobilized enzymes as heterogeneous biocatalysts. Catal Today 2016. [DOI: 10.1016/j.cattod.2015.05.004] [Citation(s) in RCA: 129] [Impact Index Per Article: 16.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Garcia-Galan C, Berenguer-Murcia Á, Fernandez-Lafuente R, Rodrigues RC. Potential of Different Enzyme Immobilization Strategies to Improve Enzyme Performance. Adv Synth Catal 2011. [DOI: 10.1002/adsc.201100534] [Citation(s) in RCA: 1243] [Impact Index Per Article: 95.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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Modulation of the distribution of small proteins within porous matrixes by smart-control of the immobilization rate. J Biotechnol 2011; 155:412-20. [DOI: 10.1016/j.jbiotec.2011.07.039] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2011] [Revised: 07/04/2011] [Accepted: 07/28/2011] [Indexed: 11/23/2022]
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Raja M, Raja A, Imran M, Santha A, Devasena K. Enzymes Application in Diagnostic Prospects. ACTA ACUST UNITED AC 2010. [DOI: 10.3923/biotech.2011.51.59] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Zavrel M, Michalik C, Schwendt T, Schmidt T, Ansorge-Schumacher M, Janzen C, Marquardt W, Büchs J, Spiess AC. Systematic determination of intrinsic reaction parameters in enzyme immobilizates. Chem Eng Sci 2010. [DOI: 10.1016/j.ces.2009.12.026] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Chen B, Miller ME, Gross RA. Effects of porous polystyrene resin parameters on Candida antarctica lipase B adsorption, distribution, and polyester synthesis activity. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2007; 23:6467-74. [PMID: 17451255 DOI: 10.1021/la063515y] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Polystyrene resins with varied particle sizes (35 to 350-600 microm) and pore diameters (300-1000 A) were employed to study the effects of immobilization resin particle size and pore diameter on Candida antarctica Lipase B (CALB) loading, distribution within resins, fraction of active sites, and catalytic properties for polyester synthesis. CALB adsorbed rapidly (saturation time </= 4 min) for particle sizes </= 120 microm (pore size = 300 A). Infrared microspectroscopy showed that CALB forms protein loading fronts regardless of resin particle size at similar enzyme loadings ( approximately 8%). From the IR images, the fractions of total surface area available to the enzyme are 21, 33, 35, 37, and 88% for particle sizes 350-600, 120, 75, 35 microm (pore size 300 A), and 35 microm (pore size 1000 A), respectively. Titration with methyl p-nitrophenyl n-hexylphosphate (MNPHP) showed that the fraction of active CALB molecules adsorbed onto resins was approximately 60%. The fraction of active CALB molecules was invariable as a function of resin particle and pore size. At approximately 8% (w/w) CALB loading, by increasing the immobilization support pore diameter from 300 to 1000 A, the turnover frequency (TOF) of epsilon-caprolactone (epsilon-CL) to polyester increased from 12.4 to 28.2 s-1. However, the epsilon-CL conversion rate was not influenced by changes in resin particle size. Similar trends were observed for condensation polymerizations between 1,8-octanediol and adipic acid. The results herein are compared to those obtained with a similar series of methyl methacrylate resins, where variations in particle size largely affected CALB distribution within resins and catalyst activity for polyester synthesis.
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Affiliation(s)
- Bo Chen
- NSF I/UCRC for Biocatalysis and Bioprocessing of Macromolecules, Polytechnic University, 6 Metrotech Center, Brooklyn, New York 11201, USA
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van Roon JL, Schroën CGPH, Tramper J, Beeftink HH. Biocatalysts: Measurement, modelling and design of heterogeneity. Biotechnol Adv 2007; 25:137-47. [PMID: 17196783 DOI: 10.1016/j.biotechadv.2006.11.005] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2006] [Accepted: 11/06/2006] [Indexed: 11/21/2022]
Abstract
Multiple phenomena are involved in conversions by immobilized biocatalysts. A paradox is identified between analytical desires on one hand and analytical boundary conditions on the other: while the study of interdependent phenomena would call for their simultaneous analysis in an integrated context, the available experimental options may impose a series of separate and dedicated analyses. From this analysis, bottlenecks in particle performance may be identified, if possible supported by a mechanistic model and performance criteria. Subsequently, a strategy for further biocatalyst development may be chosen. Finally, possibilities for future improvement of biocatalysts are discussed for various fields of research. Some examples of recent developments in enzyme and matrix characteristics, reactor operation, and micro-technology are discussed.
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Affiliation(s)
- J L van Roon
- Wageningen University, Food and Bioprocess Engineering Group, P.O. Box 8129, 6700 EV Wageningen, The Netherlands
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15
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Chen B, Miller EM, Miller L, Maikner JJ, Gross RA. Effects of macroporous resin size on Candida antarctica lipase B adsorption, fraction of active molecules, and catalytic activity for polyester synthesis. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2007; 23:1381-7. [PMID: 17241062 DOI: 10.1021/la062258u] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Methyl methacrylate resins with identical average pore diameter (250 A) and surface area (500 m2/g) but with varied particle size (35 to 560-710 microm) were employed to study how immobilization resin particle size influences Candida antarctica Lipase B (CALB) loading, fraction of active sites, and catalytic properties for polyester synthesis. CALB adsorbed more rapidly on smaller beads. Saturation occurred in less than 30 s and 48 h for beads with diameters 35 and 560-710 microm, respectively. Linearization of adsorption isotherm data by the Scatchard analysis showed for the 35 microm resin that: (i) CALB loading at saturation was well below that required to form a monolayer and fully cover the support surface and (ii) CALB has a high affinity for this resin surface. Infrared microspectroscopy showed that CALB forms protein loading fronts for resins with particle sizes 560-710 and 120 microm. In contrast, CALB appears evenly distributed throughout 35 microm resins. By titration with p-nitrophenyl n-hexyl phosphate (MNPHP), the fraction of active CALB molecules adsorbed onto resins was <50% which was not influenced by particle size. The fraction of active CALB molecules on the 35 microm support increased from 30 to 43% as enzyme loading was increased from 0.9 to 5.7% (w/w) leading to increased activity for epsilon-caprolactone (epsilon-CL) ring-opening polymerization. At about 5% w/w CALB loading, by decreasing the immobilization support diameter from 560-710 to 120, 75, and 35 microm, conversion of epsilon-CL % to polyester increased (20 to 36, 42, and 61%, respectively, at 80 min). Similar trends were observed for condensation polymerizations between 1,8-octanediol and adipic acid.
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Affiliation(s)
- Bo Chen
- NSF Industry/University Cooperative Research Center for Biocatalysis and Bioprocessing of Macromolecules, Polytechnic University, 6 Metrotech Center, Brooklyn, NY 11201, USA
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van Roon JL, van Aelst AC, Schroën CGPH, Tramper J, Beeftink HH. Field-emission scanning electron microscopy analysis of morphology and enzyme distribution within an industrial biocatalytic particle. SCANNING 2005; 27:181-9. [PMID: 16089302 DOI: 10.1002/sca.4950270405] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Field-emission scanning electron microscopy (FESEM) was used in a technical feasibility study to obtain insight into the internal morphology and the intraparticle enzyme distribution of Assemblase, an industrial biocatalytic particle containing immobilized penicillin-G acylase. The results were compared with previous studies based on light and transmission electron microscopic techniques. The integrated FESEM approach yielded the same quantitative results as the microscopic techniques used previously. Given this technical equivalence, the integrated approach offers several advantages. First, the single preparation method and detection system avoids interpretation discrepancies between corresponding areas that were examined for different properties with different detection techniques in different samples. Second, the specimen size suitable for whole particle study is virtually unlimited, which simplifies sectioning and puts less stringent demands on the embedding technique. Furthermore, the sensitivity toward enzyme presence and distribution increases because the epitopes inside thick sections become available for labeling. Quick and unambiguous analysis of the relation between particle morphology and enzyme distribution is important because this information may be used in the future for the design of enzyme distributions in which the particle morphology can be used as a control parameter.
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Affiliation(s)
- J L van Roon
- Department of Agrotechnology and Food Sciences, Food and Bioprocess Engineering Group, Wageningen University, Wageningen, The Netherlands.
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van Roon JL, Groenendijk E, Kieft H, Schroën CGPH, Tramper J, Beeftink HH. Novel approach to quantify immobilized-enzyme distributions. Biotechnol Bioeng 2005; 89:660-9. [PMID: 15674826 DOI: 10.1002/bit.20345] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
The quantitative intraparticle enzyme distribution of Assemblase, an industrially employed polydisperse immobilized penicillin-G acylase, was measured. Because of strong autofluorescence of the carrier, the generally applied technique of confocal scanning microscopy could not be used; light microscopy was our method of choice. To do so, Assemblase particles of various sizes were sectioned, labeled with antibodies specifically against the enzyme, and analyzed light microscopically. Image analysis software was developed and used to determine the intraparticle enzyme distribution, which was found to be heterogeneous, with most enzyme located in the outer regions of the particles. Larger particles showed steeper gradients than smaller ones. A mathematical representation of the intraparticle profiles, based on in-stationary enzyme diffusion into the particles, was validated successfully for a broad range of particle sizes using data for volume-averaged particle size and enzyme loading. The enzyme gradients determined in this work will be used as input for a physical model that quantitatively describes the complex behavior of Assemblase. Such a physical model will lead to identification of the current bottlenecks in Assemblase and can serve as a starting point for the design of improved biocatalysts that also may be based on intelligent use of enzyme gradients.
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Affiliation(s)
- J L van Roon
- Department of Agrotechnology and Food Sciences, Food and Bioprocess Engineering Group, Wageningen University, P.O. Box 8129, 6700 EV Wageningen, The Netherlands.
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Abstract
Recent advances have been made in the development of carrier-free immobilised enzymes and several criteria established for the selection of immobilised enzymes for biotransformations. The pros and cons of carrier-free versus carrier-bound immobilised enzymes and of each type of carrier-free enzyme are discussed.
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Affiliation(s)
- Linqiu Cao
- Laboratory of Biocatalysis and Organic Chemistry, Delft University of Technology, Julianalaan 136, 2628 BL Delft, The Netherlands
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