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Raval P, Thomas N, Hamdouna L, Delevoye L, Lafon O, Manjunatha Reddy GN. Boron Adsorption Kinetics of Microcrystalline Cellulose and Polymer Resin. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:5384-5395. [PMID: 37022335 DOI: 10.1021/acs.langmuir.3c00021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Tailoring boron-polysaccharide interactions is an important strategy for developing functional soft materials such as hydrogels, fire retardants, and sorbents for environmental remediation, for example, using lignocellulosic biomass. For such applications to be realized, it is paramount to understand the adsorption kinetics of borate anions on cellulose and their local structures. Here, the kinetic aspects of boron adsorption by microcrystalline cellulose, lignin, and polymeric resin are investigated and compared. Borate anions interact with the vicinal diols in the glucopyranoside moieties of cellulose to yield chemisorbed boron chelate complexes. In contrast to cellulose, technical lignin contains fewer cis-vicinal diols, and it does not have a tendency to form such chelate complexes upon treatment with the aqueous boric acid solution. The formation kinetics and stability of these chelate complexes strongly depend on nanoscale structures, as well as reaction conditions such as pH and concentration of the sorbate and sorbent. Specifically, insights into the distinct boron adsorption sites were obtained by solid-state one-dimensional (1D) 11B magic-angle spinning NMR and the local structures and intermolecular interactions in the vicinities of boron chelate complexes are elucidated by analyzing two-dimensional (2D) 1H-13C and 11B-1H heteronuclear correlation NMR spectra. The total boron adsorption capacity of cellulose is estimated to be in the 1.3-3.0 mg range per gram of sorbent, which is lower than the boron adsorption capacity of a polystyrene-based resin, ∼17.2 mg of boron per gram of Amberlite IRA 743. Our study demonstrates that the local backbone and side chain flexibility as well as the structures of polyol groups play a significant role in determining the kinetic and thermodynamic stability of chelate complexes, yielding to different boron adsorption capabilities of lignocellulosic polymers.
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Affiliation(s)
- Parth Raval
- University of Lille, CNRS, Centrale Lille Institut, Univ. Artois, UMR 8181-UCCS- Unité de Catalyse et Chimie du Solide, F-59000 Lille, France
| | - Neethu Thomas
- University of Lille, CNRS, Centrale Lille Institut, Univ. Artois, UMR 8181-UCCS- Unité de Catalyse et Chimie du Solide, F-59000 Lille, France
| | - Lama Hamdouna
- University of Lille, CNRS, Centrale Lille Institut, Univ. Artois, UMR 8181-UCCS- Unité de Catalyse et Chimie du Solide, F-59000 Lille, France
| | - Laurent Delevoye
- University of Lille, CNRS, Centrale Lille Institut, Univ. Artois, UMR 8181-UCCS- Unité de Catalyse et Chimie du Solide, F-59000 Lille, France
| | - Olivier Lafon
- University of Lille, CNRS, Centrale Lille Institut, Univ. Artois, UMR 8181-UCCS- Unité de Catalyse et Chimie du Solide, F-59000 Lille, France
| | - G N Manjunatha Reddy
- University of Lille, CNRS, Centrale Lille Institut, Univ. Artois, UMR 8181-UCCS- Unité de Catalyse et Chimie du Solide, F-59000 Lille, France
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2
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Wong YTA, Aspers RLEG, Uusi-Penttilä M, Kentgens APM. Rapid Quantification of Pharmaceuticals via 1H Solid-State NMR Spectroscopy. Anal Chem 2022; 94:16667-16674. [DOI: 10.1021/acs.analchem.2c02905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Affiliation(s)
- Y. T. Angel Wong
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJNijmegen, The Netherlands
| | - Ruud L. E. G. Aspers
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJNijmegen, The Netherlands
| | | | - Arno P. M. Kentgens
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJNijmegen, The Netherlands
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3
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O’Brien TE, Ioffe LB, Su Y, Fushman D, Neven H, Babbush R, Smelyanskiy V. Quantum computation of molecular structure using data from challenging-to-classically-simulate nuclear magnetic resonance experiments. PRX QUANTUM : A PHYSICAL REVIEW JOURNAL 2022; 3:030345. [PMID: 36624758 PMCID: PMC9825292 DOI: 10.1103/prxquantum.3.030345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
We propose a quantum algorithm for inferring the molecular nuclear spin Hamiltonian from time-resolved measurements of spin-spin correlators, which can be obtained via nuclear magnetic resonance (NMR). We focus on learning the anisotropic dipolar term of the Hamiltonian, which generates dynamics that are challenging to classically simulate in some contexts. We demonstrate the ability to directly estimate the Jacobian and Hessian of the corresponding learning problem on a quantum computer, allowing us to learn the Hamiltonian parameters. We develop algorithms for performing this computation on both noisy near-term and future fault-tolerant quantum computers. We argue that the former is promising as an early beyond-classical quantum application since it only requires evolution of a local spin Hamiltonian. We investigate the example of a protein (ubiquitin) confined on a membrane as a benchmark of our method. We isolate small spin clusters, demonstrate the convergence of our learning algorithm on one such example, and then investigate the learnability of these clusters as we cross the ergodic to non-ergodic phase transition by suppressing the dipolar interaction. We see a clear correspondence between a drop in the multifractal dimension measured across many-body eigenstates of these clusters, and a transition in the structure of the Hessian of the learning cost function (from degenerate to learnable). Our hope is that such quantum computations might enable the interpretation and development of new NMR techniques for analyzing molecular structure.
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Affiliation(s)
| | - Lev B. Ioffe
- Google Quantum AI, Venice, CA 90291, United States
| | - Yuan Su
- Google Quantum AI, Venice, CA 90291, United States
| | - David Fushman
- Department of Chemistry and Biochemistry, Center for Biomolecular Structure and Organization, University of Maryland, College Park, MD 20742, United States
| | | | - Ryan Babbush
- Google Quantum AI, Venice, CA 90291, United States
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Tognetti J, Franks WT, Lewandowski JR, Brown SP. Optimisation of 1H PMLG homonuclear decoupling at 60 kHz MAS to enable 15N-1H through-bond heteronuclear correlation solid-state NMR spectroscopy. Phys Chem Chem Phys 2022; 24:20258-20273. [PMID: 35975627 PMCID: PMC9429863 DOI: 10.1039/d2cp01041k] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The Lee–Goldburg condition for homonuclear decoupling in 1H magic-angle spinning (MAS) solid-state NMR sets the angle θ, corresponding to arctan of the ratio of the rf nutation frequency, ν1, to the rf offset, to be the magic angle, θm, equal to tan−1(√2) = 54.7°. At 60 kHz MAS, we report enhanced decoupling compared to MAS alone in a 1H spectrum of 15N-glycine with at θ = 30° for a ν1 of ∼100 kHz at a 1H Larmor frequency, ν0, of 500 MHz and 1 GHz, corresponding to a high chemical shift scaling factor (λCS) of 0.82. At 1 GHz, we also demonstrate enhanced decoupling compared to 60 kHz MAS alone for a lower ν1 of 51 kHz, i.e., a case where the nutation frequency is less than the MAS frequency, with θ = 18°, λCS = 0.92. The ratio of the rotor period to the decoupling cycle time, Ψ = τr/τc, is in the range 0.53 to 0.61. Windowed decoupling using the optimised parameters for a ν1 of ∼100 kHz also gives good performance in a 1H spin-echo experiment, enabling implementation in a 1H-detected 15N–1H cross polarisation (CP)-refocused INEPT heteronuclear correlation NMR experiment. Specifically, initial 15N transverse magnetisation as generated by 1H–15N CP is transferred back to 1H using a refocused INEPT pulse sequence employing windowed 1H decoupling. Such an approach ensures the observation of through-bond N–H connectivities. For 15N-glycine, while the CP-refocused INEPT experiment has a lower sensitivity (∼50%) as compared to a double CP experiment (with a 200 μs 15N to 1H CP contact time), there is selectivity for the directly bonded NH3+ moiety, while intensity is observed for the CH21H resonances in the double CP experiment. Two-dimensional 15N–1H correlation MAS NMR spectra are presented for the dipeptide β-AspAla and the pharmaceutical cimetidine at 60 kHz MAS, both at natural isotopic abundance. For the dipeptide β-AspAla, different build-up dependence on the first spin-echo duration is observed for the NH and NH3+ moieties demonstrating that the experiment could be used to distinguish resonances for different NHx groups. 15N–1H heteronuclear NMR correlation at natural abundance in the solid state via J couplings is enabled by optimisation of phase-modulated Lee–Goldburg (PMLG) 1H homonuclear decoupling during the spin echoes, far from the ideal magic-angle condition.![]()
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Affiliation(s)
- Jacqueline Tognetti
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, UK
- Department of Physics, University of Warwick, Coventry CV4 7AL, UK.
| | - W Trent Franks
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, UK
- Department of Physics, University of Warwick, Coventry CV4 7AL, UK.
| | | | - Steven P Brown
- Department of Physics, University of Warwick, Coventry CV4 7AL, UK.
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Nagashima H, Trébosc J, Kon Y, Lafon O, Amoureux JP. Efficient transfer of DNP-enhanced 1 H magnetization to half-integer quadrupolar nuclei in solids at moderate spinning rate. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2021; 59:920-939. [PMID: 33300128 DOI: 10.1002/mrc.5121] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 12/02/2020] [Accepted: 12/05/2020] [Indexed: 06/12/2023]
Abstract
We show herein how the proton magnetization enhanced by dynamic nuclear polarization (DNP) can be efficiently transferred at moderate magic-angle spinning (MAS) frequencies to half-integer quadrupolar nuclei, S ≥ 3/2, using the Dipolar-mediated Refocused Insensitive Nuclei Enhanced by Polarization Transfer (D-RINEPT) technique, in which a symmetry-based SR 4 1 2 recoupling scheme built from adiabatic inversion 1 H pulses reintroduces the 1 H-S dipolar couplings, while suppressing the 1 H-1 H ones. The use of adiabatic pulses also improves the robustness to offsets and radiofrequency (rf)-field inhomogeneity. Furthermore, the efficiency of the polarization transfer is further improved by using 1 H composite pulses and continuous-wave irradiations between the recoupling blocks, as well as by manipulating the S satellite transitions during the first recoupling block. Furthermore, in the case of large 1 H-S dipolar couplings, the D-RINEPT variant with two pulses on the quadrupolar channel results in an improved transfer efficiency. We compare here the performances of this new adiabatic scheme with those of its parent version with single π pulses, as well as with those of PRESTO and CPMAS transfers. This comparison is performed using simulations as well as DNP-enhanced 27 Al, 95 Mo, and 17 O NMR experiments on isotopically unmodified γ-alumina, hydrated titania-supported MoO3 , Mg(OH)2 , and l-histidine·HCl·H2 O. The introduced RINEPT method outperforms the existing methods, both in terms of efficiency and robustness to rf-field inhomogeneity and offset.
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Affiliation(s)
- Hiroki Nagashima
- Interdisciplinary Research Center for Catalytic Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan
| | - Julien Trébosc
- Univ. Lille, CNRS, Centrale Lille, Univ. Artois, UMR 8181-UCCS-Unité de Catalyse et de Chimie du Solide, Lille, France
- Univ. Lille, CNRS, INRAE, Centrale Lille, Univ. Artois, FR 2638 - IMEC - Institut Michel-Eugène Chevreul, Lille, France
| | - Yoshihiro Kon
- Interdisciplinary Research Center for Catalytic Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan
| | - Olivier Lafon
- Univ. Lille, CNRS, Centrale Lille, Univ. Artois, UMR 8181-UCCS-Unité de Catalyse et de Chimie du Solide, Lille, France
- Institut Universitaire de France, France
| | - Jean-Paul Amoureux
- Univ. Lille, CNRS, Centrale Lille, Univ. Artois, UMR 8181-UCCS-Unité de Catalyse et de Chimie du Solide, Lille, France
- Bruker BioSpin, Wissembourg, France
- NMR Science and Development Division, Riken, Yokohama, Japan
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6
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Leroy C, Bonhomme-Coury L, Gervais C, Tielens F, Babonneau F, Daudon M, Bazin D, Letavernier E, Laurencin D, Iuga D, Hanna J, Smith M, Bonhomme C. A novel multinuclear solid-state NMR approach for the characterization of kidney stones. MAGNETIC RESONANCE (GOTTINGEN, GERMANY) 2021; 2:653-671. [PMID: 37905220 PMCID: PMC10539836 DOI: 10.5194/mr-2-653-2021] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2021] [Accepted: 06/15/2021] [Indexed: 11/01/2023]
Abstract
The spectroscopic study of pathological calcifications (including kidney stones) is extremely rich and helps to improve the understanding of the physical and chemical processes associated with their formation. While Fourier transform infrared (FTIR) imaging and optical/electron microscopies are routine techniques in hospitals, there has been a dearth of solid-state NMR studies introduced into this area of medical research, probably due to the scarcity of this analytical technique in hospital facilities. This work introduces effective multinuclear and multidimensional solid-state NMR methodologies to study the complex chemical and structural properties characterizing kidney stone composition. As a basis for comparison, three hydrates (n = 1 , 2 and 3) of calcium oxalate are examined along with nine representative kidney stones. The multinuclear magic angle spinning (MAS) NMR approach adopted investigates the 1 H , 13 C , 31 P and 31 P nuclei, with the 1 H and 13 C MAS NMR data able to be readily deconvoluted into the constituent elements associated with the different oxalates and organics present. For the first time, the full interpretation of highly resolved 1 H NMR spectra is presented for the three hydrates, based on the structure and local dynamics. The corresponding 31 P MAS NMR data indicates the presence of low-level inorganic phosphate species; however, the complexity of these data make the precise identification of the phases difficult to assign. This work provides physicians, urologists and nephrologists with additional avenues of spectroscopic investigation to interrogate this complex medical dilemma that requires real, multitechnique approaches to generate effective outcomes.
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Affiliation(s)
- César Leroy
- Laboratoire Chimie de la Matière Condensée de Paris, LCMCP, Sorbonne Université, CNRS, 75005 Paris, France
- Institut Charles Gerhardt Montpellier, CNRS, ENSCM, Université de Montpellier, Montpellier, France
| | - Laure Bonhomme-Coury
- Laboratoire Chimie de la Matière Condensée de Paris, LCMCP, Sorbonne Université, CNRS, 75005 Paris, France
| | - Christel Gervais
- Laboratoire Chimie de la Matière Condensée de Paris, LCMCP, Sorbonne Université, CNRS, 75005 Paris, France
| | - Frederik Tielens
- Laboratoire Chimie de la Matière Condensée de Paris, LCMCP, Sorbonne Université, CNRS, 75005 Paris, France
- General Chemistry (ALGC) – Materials Modelling Group, Vrije
Universiteit Brussel (Free University Brussels – VUB), Pleinlaan 2, 1050
Brussels, Belgium
| | - Florence Babonneau
- Laboratoire Chimie de la Matière Condensée de Paris, LCMCP, Sorbonne Université, CNRS, 75005 Paris, France
| | - Michel Daudon
- AP-HP, Hôpital Tenon, Explorations Fonctionnelles
Multidisciplinaires et INSERM UMRS 1155, Sorbonne Université, Hôpital Tenon, Paris, France
| | - Dominique Bazin
- Institut de Chimie Physique, UMR CNRS 8000, Bâtiment 350,
Université Paris Saclay, 91405 Orsay CEDEX, France
- Laboratoire de Physique des Solides, UMR CNRS 8502, Bâtiment 510, Université Paris-Sud, 91405 Orsay CEDEX, France
| | - Emmanuel Letavernier
- AP-HP, Hôpital Tenon, Explorations Fonctionnelles
Multidisciplinaires et INSERM UMRS 1155, Sorbonne Université, Hôpital Tenon, Paris, France
| | - Danielle Laurencin
- Institut Charles Gerhardt Montpellier, CNRS, ENSCM, Université de Montpellier, Montpellier, France
| | - Dinu Iuga
- Department of Physics, University of Warwick, Gibbet Hill Road,
Coventry CV4 7AL, United Kingdom
| | - John V. Hanna
- Department of Physics, University of Warwick, Gibbet Hill Road,
Coventry CV4 7AL, United Kingdom
| | - Mark E. Smith
- Department of Chemistry, University of Southampton, Southampton SO17 1BJ, United Kingdom
| | - Christian Bonhomme
- Laboratoire Chimie de la Matière Condensée de Paris, LCMCP, Sorbonne Université, CNRS, 75005 Paris, France
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Nagashima H, Trébosc J, Kon Y, Sato K, Lafon O, Amoureux JP. Observation of Low-γ Quadrupolar Nuclei by Surface-Enhanced NMR Spectroscopy. J Am Chem Soc 2020; 142:10659-10672. [DOI: 10.1021/jacs.9b13838] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Hiroki Nagashima
- Interdisciplinary Research Center for Catalytic Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan
| | - Julien Trébosc
- Univ. Lille, CNRS, Centrale Lille, Univ. Artois, UMR 8181, UCCS - Unité de Catalyse et de Chimie du Solide, F-59000 Lille, France
- Univ. Lille, CNRS-2638, Fédération Chevreul, F-59000 Lille, France
| | - Yoshihiro Kon
- Interdisciplinary Research Center for Catalytic Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan
| | - Kazuhiko Sato
- Interdisciplinary Research Center for Catalytic Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan
| | - Olivier Lafon
- Univ. Lille, CNRS, Centrale Lille, Univ. Artois, UMR 8181, UCCS - Unité de Catalyse et de Chimie du Solide, F-59000 Lille, France
- Institut Universitaire de France, 1 rue Descartes, F-75231 Paris, France
| | - Jean-Paul Amoureux
- Univ. Lille, CNRS, Centrale Lille, Univ. Artois, UMR 8181, UCCS - Unité de Catalyse et de Chimie du Solide, F-59000 Lille, France
- Bruker Biospin, 34 rue de l’industrie, F-67166 Wissembourg, France
- Riken NMR Science and Development Division, Yokohama, 230-0045 Kanagawa, Japan
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8
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Paruzzo FM, Emsley L. High-resolution 1H NMR of powdered solids by homonuclear dipolar decoupling. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2019; 309:106598. [PMID: 31586820 DOI: 10.1016/j.jmr.2019.106598] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2019] [Revised: 09/13/2019] [Accepted: 09/13/2019] [Indexed: 06/10/2023]
Abstract
The development of homonuclear dipolar decoupling sequences to obtain high-resolution 1H NMR spectra from solids has recently celebrated its 50th birthday. Over the years, a series of different decoupling schemes have been developed, starting with the pioneering Lee-Goldburg and WAHUHA sequences up to the most recent generation of experimentally optimized phase-modulated schemes such as eDUMBO-122 and LG4. These schemes can all yield over an order of magnitude reduction in 1H NMR linewidths in solids. Here we provide an overview and a broad experimental comparison of the performance of the main sequences, which has so far been absent in the literature, especially between the newest and the oldest decoupling schemes. We compare experimental results obtained using eight different decoupling schemes (LG, WHH-4, MREV-8, BR-24, FSLG/PMLG, DUMBO-1, eDUMBO-122 and LG4) on three different microcrystalline powdered samples (alanine, glycine and β-AspAla) and at three different MAS rates (3.0, 12.5 and 22.0 kHz). Finally, since these sequences can be technically demanding, we describe the experimental protocol we have used to optimize these schemes with the aim to provide simple guidelines for the optimization of CRAMPS experiments for all NMR users.
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Affiliation(s)
- Federico M Paruzzo
- Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Lyndon Emsley
- Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland.
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9
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Naito A, Kametani S, Aoki A, Asakura T. Structural Analyses of Alanine Trimer and Tetramer Crystals with Antiparallel and Parallel β-Sheet Structures Using Solid-State 1H Spin-Diffusion 2D Correlation NMR Spectroscopy. J Phys Chem B 2018; 122:9373-9381. [PMID: 30234305 DOI: 10.1021/acs.jpcb.8b07859] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Poly-l-alanine (PLA) sequences are key elements of the crystalline domains of spider dragline and wild silkworm silks. In the present work, 1H spin-diffusion two-dimensional (2D) correlation NMR spectra were observed for selectively deuterated (Ala)3 and (Ala)4 crystals to develop the analytical method for the structure of PLA sequences. The build-up curves of the cross peaks for three kinds of 1H pairs in selectively deuterated (Ala)3 and (Ala)4 crystals were observed to obtain spin-diffusion rate constant k j, k from relaxation master equations P i, j(τm). The k j, k values subsequently lead to effective interproton distance r j, keff (obs) values for individual proton-proton pairs, which include intra- and intermolecular contributions. The r j, keff (obs) values were compared to r j, keff (calc) values obtained from the experimentally determined atomic coordinates of antiparallel (AP) β-sheet (Ala)3 and (Ala)4 and parallel (P) β-sheet of (Ala)3 and (Ala)4 crystals. The agreement between the r j, keff (obs) and r j, keff (calc) values was good for AP β-sheet (Ala)3 and (Ala)4 crystals but poor for P β-sheet (Ala)3 and (Ala)4 crystals. These deviations were obtained from the interproton distances of the interchain contributions due to different packing arrangements. The packing arrangements of the PLA region are important when considering the relevant structure and the mechanical properties of silks.
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Affiliation(s)
- Akira Naito
- Department of Biotechnology , Tokyo University of Agriculture and Technology , Koganei , Tokyo 184-8588 , Japan
| | - Shunsuke Kametani
- Department of Biotechnology , Tokyo University of Agriculture and Technology , Koganei , Tokyo 184-8588 , Japan
| | - Akihiro Aoki
- Department of Biotechnology , Tokyo University of Agriculture and Technology , Koganei , Tokyo 184-8588 , Japan
| | - Tetsuo Asakura
- Department of Biotechnology , Tokyo University of Agriculture and Technology , Koganei , Tokyo 184-8588 , Japan
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10
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Potnuru LR, Yarava JR, Pahari B, Ramanathan K. Use of reverse cross-polarization for editing solid–state proton NMR spectra. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.04.097] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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11
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Paruzzo FM, Stevanato G, Halse ME, Schlagnitweit J, Mammoli D, Lesage A, Emsley L. Refocused linewidths less than 10 Hz in 1H solid-state NMR. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2018; 293:41-46. [PMID: 29890485 DOI: 10.1016/j.jmr.2018.06.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2018] [Revised: 05/29/2018] [Accepted: 06/01/2018] [Indexed: 06/08/2023]
Abstract
Coherence lifetimes in homonuclear dipolar decoupled 1H solid-state NMR experiments are usually on the order of a few ms. We discover an oscillation that limits the lifetime of the coherences by recording spin-echo dephasing curves. We find that this oscillation can be removed by the application of a double spin-echo experiment, leading to coherence lifetimes of more than 45 ms in adamantane and more that 22 ms in β-AspAla, corresponding to refocused linewidths of less than 7 and 14 Hz respectively.
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Affiliation(s)
- Federico M Paruzzo
- Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland
| | - Gabriele Stevanato
- Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland
| | - Meghan E Halse
- Department of Chemistry, University of York, Heslington, York YO10 5DD, UK
| | - Judith Schlagnitweit
- Department of Medical Biochemistry and Biophysics, Karolinska Institute, Stockholm 17177, Sweden
| | - Daniele Mammoli
- Department of Radiology, University of California, San Francisco 94158, USA
| | - Anne Lesage
- Institut des Sciences Analytiques, Université de Lyon, 69100 Villeurbanne, France
| | - Lyndon Emsley
- Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland.
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12
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Sternberg U, Witter R, Kuprov I, Lamley JM, Oss A, Lewandowski JR, Samoson A. 1H line width dependence on MAS speed in solid state NMR - Comparison of experiment and simulation. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2018; 291:32-39. [PMID: 29679841 DOI: 10.1016/j.jmr.2018.04.003] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Revised: 04/04/2018] [Accepted: 04/06/2018] [Indexed: 06/08/2023]
Abstract
Recent developments in magic angle spinning (MAS) technology permit spinning frequencies of ≥100 kHz. We examine the effect of such fast MAS rates upon nuclear magnetic resonance proton line widths in the multi-spin system of β-Asp-Ala crystal. We perform powder pattern simulations employing Fokker-Plank approach with periodic boundary conditions and 1H-chemical shift tensors calculated using the bond polarization theory. The theoretical predictions mirror well the experimental results. Both approaches demonstrate that homogeneous broadening has a linear-quadratic dependency on the inverse of the MAS spinning frequency and that, at the faster end of the spinning frequencies, the residual spectral line broadening becomes dominated by chemical shift distributions and susceptibility effects even for crystalline systems.
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Affiliation(s)
- Ulrich Sternberg
- Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany; COSMOS GbR, Jena, Germany.
| | - Raiker Witter
- School of Information Technologies, Tallinn University of Technology, Tallinn, Estonia; Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany; NMR Institute MTÜ, Tallinn, Estonia
| | - Ilya Kuprov
- School of Chemistry, University of Southampton, UK
| | | | - Andres Oss
- School of Information Technologies, Tallinn University of Technology, Tallinn, Estonia; NMR Institute MTÜ, Tallinn, Estonia
| | | | - Ago Samoson
- School of Information Technologies, Tallinn University of Technology, Tallinn, Estonia; NMR Institute MTÜ, Tallinn, Estonia
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13
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Pindelska E, Sokal A, Kolodziejski W. Pharmaceutical cocrystals, salts and polymorphs: Advanced characterization techniques. Adv Drug Deliv Rev 2017; 117:111-146. [PMID: 28931472 DOI: 10.1016/j.addr.2017.09.014] [Citation(s) in RCA: 73] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2017] [Revised: 08/21/2017] [Accepted: 09/14/2017] [Indexed: 12/11/2022]
Abstract
The main goal of a novel drug development is to obtain it with optimal physiochemical, pharmaceutical and biological properties. Pharmaceutical companies and scientists modify active pharmaceutical ingredients (APIs), which often are cocrystals, salts or carefully selected polymorphs, to improve the properties of a parent drug. To find the best form of a drug, various advanced characterization methods should be used. In this review, we have described such analytical methods, dedicated to solid drug forms. Thus, diffraction, spectroscopic, thermal and also pharmaceutical characterization methods are discussed. They all are necessary to study a solid API in its intrinsic complexity from bulk down to the molecular level, gain information on its structure, properties, purity and possible transformations, and make the characterization efficient, comprehensive and complete. Furthermore, these methods can be used to monitor and investigate physical processes, involved in the drug development, in situ and in real time. The main aim of this paper is to gather information on the current advancements in the analytical methods and highlight their pharmaceutical relevance.
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14
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Ahmed NB, Masse S, Laurent G, Piquemal JY, Yéprémian C, Brayner R, Coradin T. Optical microalgal biosensors for aqueous contaminants using organically doped silica as cellular hosts. Anal Bioanal Chem 2017; 410:1205-1216. [DOI: 10.1007/s00216-017-0405-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2016] [Revised: 04/27/2017] [Accepted: 05/09/2017] [Indexed: 10/19/2022]
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15
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Tian D, Li T, Zhang R, Wu Q, Chen T, Sun P, Ramamoorthy A. Conformations and Intermolecular Interactions in Cellulose/Silk Fibroin Blend Films: A Solid-State NMR Perspective. J Phys Chem B 2017; 121:6108-6116. [DOI: 10.1021/acs.jpcb.7b02838] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Donglin Tian
- Key
Laboratory of Functional Polymer Materials of Ministry of Education
and College of chemistry, Nankai University, Tianjin 300071, P. R. China
| | - Tao Li
- Key
Laboratory of Functional Polymer Materials of Ministry of Education
and College of chemistry, Nankai University, Tianjin 300071, P. R. China
| | - Rongchun Zhang
- State
Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300071, P. R. China
| | - Qiang Wu
- Key
Laboratory of Functional Polymer Materials of Ministry of Education
and College of chemistry, Nankai University, Tianjin 300071, P. R. China
| | - Tiehong Chen
- Institute
of New Catalytic Materials Science, School of Materials Science and
Engineering, Key Laboratory of Advanced Energy Materials Chemistry
(MOE), Nankai University, Tianjin 300350, P. R. China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300071, P. R. China
| | - Pingchuan Sun
- Key
Laboratory of Functional Polymer Materials of Ministry of Education
and College of chemistry, Nankai University, Tianjin 300071, P. R. China
- State
Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300071, P. R. China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300071, P. R. China
| | - Ayyalusamy Ramamoorthy
- Biophysics
Program and Department of Chemistry, The University of Michigan, 930 North University Avenue, Ann Arbor, Michigan 48109-1055, United States
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16
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Hunyadi D, Majzik E, Mátyási J, Balla J, Domján A, Szegedi Á, Szilágyi IM. WO 3–EDA hybrid nanoplates and nanowires: synthesis, characterization, formation mechanism and thermal decomposition. RSC Adv 2017. [DOI: 10.1039/c7ra10120a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Previously the WO3–EDA hybrid material was obtained only from solvothermal reactions.
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Affiliation(s)
- Dávid Hunyadi
- Department of Inorganic and Analytical Chemistry
- Budapest University of Technology and Economics
- H-1111 Budapest
- Hungary
| | - Eszter Majzik
- Department of Inorganic and Analytical Chemistry
- Budapest University of Technology and Economics
- H-1111 Budapest
- Hungary
| | - Judit Mátyási
- Department of Inorganic and Analytical Chemistry
- Budapest University of Technology and Economics
- H-1111 Budapest
- Hungary
| | - József Balla
- Department of Inorganic and Analytical Chemistry
- Budapest University of Technology and Economics
- H-1111 Budapest
- Hungary
| | - Attila Domján
- NMR Laboratory
- Research Centre for Natural Sciences
- Hungarian Academy of Sciences
- H-1117 Budapest
- Hungary
| | - Ágnes Szegedi
- Institute of Materials and Environmental Chemistry
- Research Centre for Natural Sciences
- Hungarian Academy of Sciences
- H-1117 Budapest
- Hungary
| | - Imre Miklós Szilágyi
- Department of Inorganic and Analytical Chemistry
- Budapest University of Technology and Economics
- H-1111 Budapest
- Hungary
- Technical Analytical Chemistry Research Group of the Hungarian Academy of Sciences
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17
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Brauckmann JO, Janssen JWGH, Kentgens APM. High resolution triple resonance micro magic angle spinning NMR spectroscopy of nanoliter sample volumes. Phys Chem Chem Phys 2016; 18:4902-10. [PMID: 26806199 DOI: 10.1039/c5cp07857a] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
To be able to study mass-limited samples and small single crystals, a triple resonance micro-magic angle spinning (μMAS) probehead for the application of high-resolution solid-state NMR of nanoliter samples was developed. Due to its excellent rf performance this allows us to explore the limits of proton NMR resolution in strongly coupled solids. Using homonuclear decoupling we obtain unprecedented (1)H linewidths for a single crystal of glycine (Δν(CH2) = 0.14 ppm) at high field (20 T) in a directly detected spectrum. The triple channel design allowed the recording of high-resolution μMAS (13)C-(15)N correlations of [U-(13)C-(15)N] arginine HCl and shows that the superior (1)H resolution opens the way for high-sensitivity inverse detection of heteronuclei even at moderate spinning speeds and rf-fields. Efficient decoupling leads to long coherence times which can be exploited in many correlation experiments.
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Affiliation(s)
- J Ole Brauckmann
- Institute of Molecules and Materials, Radboud University, 6500 GL Nijmegen, Netherlands. and TI-COAST, Science Park 904, 1098 XH Amsterdam, Netherlands
| | - J W G Hans Janssen
- Institute of Molecules and Materials, Radboud University, 6500 GL Nijmegen, Netherlands.
| | - Arno P M Kentgens
- Institute of Molecules and Materials, Radboud University, 6500 GL Nijmegen, Netherlands.
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18
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Gras P, Baker A, Combes C, Rey C, Sarda S, Wright AJ, Smith ME, Hanna JV, Gervais C, Laurencin D, Bonhomme C. From crystalline to amorphous calcium pyrophosphates: A solid state Nuclear Magnetic Resonance perspective. Acta Biomater 2016; 31:348-357. [PMID: 26476341 DOI: 10.1016/j.actbio.2015.10.016] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2015] [Revised: 09/09/2015] [Accepted: 10/12/2015] [Indexed: 12/14/2022]
Abstract
Hydrated calcium pyrophosphates (CPP, Ca2P2O7·nH2O) are a fundamental family of materials among osteoarticular pathologic calcifications. In this contribution, a comprehensive multinuclear NMR (Nuclear Magnetic Resonance) study of four crystalline and two amorphous phases of this family is presented. (1)H, (31)P and (43)Ca MAS (Magic Angle Spinning) NMR spectra were recorded, leading to informative fingerprints characterizing each compound. In particular, different (1)H and (43)Ca solid state NMR signatures were observed for the amorphous phases, depending on the synthetic procedure used. The NMR parameters of the crystalline phases were determined using the GIPAW (Gauge Including Projected Augmented Wave) DFT approach, based on first-principles calculations. In some cases, relaxed structures were found to improve the agreement between experimental and calculated values, demonstrating the importance of proton positions and pyrophosphate local geometry in this particular NMR crystallography approach. Such calculations serve as a basis for the future ab initio modeling of the amorphous CPP phases. STATEMENT OF SIGNIFICANCE The general concept of NMR crystallography is applied to the detailed study of calcium pyrophosphates (CPP), whether hydrated or not, and whether crystalline or amorphous. CPP are a fundamental family of materials among osteoarticular pathologic calcifications. Their prevalence increases with age, impacting on 17.5% of the population after the age of 80. They are frequently involved or associated with acute articular arthritis such as pseudogout. Current treatments are mainly directed at relieving the symptoms of joint inflammation but not at inhibiting CPP formation nor at dissolving these crystals. The combination of advanced NMR techniques, modeling and DFT based calculation of NMR parameters allows new original insights in the detailed structural description of this important class of biomaterials.
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Affiliation(s)
- Pierre Gras
- CIRIMAT, INPT-CNRS-UPS, Université de Toulouse, ENSIACET, Toulouse, France
| | - Annabelle Baker
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK
| | - Christèle Combes
- CIRIMAT, INPT-CNRS-UPS, Université de Toulouse, ENSIACET, Toulouse, France
| | - Christian Rey
- CIRIMAT, INPT-CNRS-UPS, Université de Toulouse, ENSIACET, Toulouse, France
| | - Stéphanie Sarda
- CIRIMAT, INPT-CNRS-UPS, Université de Toulouse, Université Paul Sabatier, Toulouse, France
| | - Adrian J Wright
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK
| | - Mark E Smith
- Vice-Chancellor's Office, University House, Lancaster University, Lancaster LA14YW, UK; Department of Physics, University of Warwick, Coventry CV4 7AL, UK
| | - John V Hanna
- Department of Physics, University of Warwick, Coventry CV4 7AL, UK
| | - Christel Gervais
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, Collège de France, UMR 7574, Chimie de la Matière Condensée de Paris, 75005 Paris, France
| | - Danielle Laurencin
- Institut Charles Gerhardt de Montpellier, UMR 5253, CNRS-UM-ENSCM, Université de Montpellier, Montpellier, France
| | - Christian Bonhomme
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, Collège de France, UMR 7574, Chimie de la Matière Condensée de Paris, 75005 Paris, France.
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19
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Mote KR, Madhu PK. Proton-detected solid-state NMR spectroscopy of fully protonated proteins at slow to moderate magic-angle spinning frequencies. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2015; 261:149-56. [PMID: 26580064 DOI: 10.1016/j.jmr.2015.10.016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Revised: 10/11/2015] [Accepted: 10/20/2015] [Indexed: 06/05/2023]
Abstract
(1)H-detection offers a substitute to the sensitivity-starved experiments often used to characterize biomolecular samples using magic-angle spinning solid-state NMR spectroscopy (MAS-ssNMR). To mitigate the effects of the strong (1)H-(1)H dipolar coupled network that would otherwise severely broaden resonances, high MAS frequencies (>40kHz) are often employed. Here, we have explored the alternative of stroboscopic (1)H-detection at moderate MAS frequencies of 5-30kHz using windowed version of supercycled-phase-modulated Lee-Goldburg homonuclear decoupling. We show that improved resolution in the (1)H dimension, comparable to that obtainable at high spinning frequencies of 40-60kHz without homonuclear decoupling, can be obtained in these experiments for fully protonated proteins. Along with detailed analysis of the performance of the method on the standard tri-peptide f-MLF, experiments on micro-crystalline GB1 and amyloid-β aggregates are used to demonstrate the applicability of these pulse-sequences to challenging biomolecular systems. With only two parameters to optimize, broadbanded performance of the homonuclear decoupling sequence, linear dependence of the chemical-shift scaling factor on resonance offset and a straightforward implementation under experimental conditions currently used for many biomolecular studies (viz. spinning frequencies and radio-frequency amplitudes), we expect these experiments to complement the current (13)C-detection based methods in assignments and characterization through chemical-shift mapping.
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Affiliation(s)
- Kaustubh R Mote
- TIFR Center for Interdisciplinary Sciences, Tata Institute of Fundamental Research Hyderabad, 21 Brundavan Colony, Narsingi, Hyderabad 500075, India.
| | - Perunthiruthy K Madhu
- TIFR Center for Interdisciplinary Sciences, Tata Institute of Fundamental Research Hyderabad, 21 Brundavan Colony, Narsingi, Hyderabad 500075, India; Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400005, India.
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20
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Brouwer DH, Horvath M. Minimizing the effects of RF inhomogeneity and phase transients allows resolution of two peaks in the (1)H CRAMPS NMR spectrum of adamantane. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2015; 71:30-40. [PMID: 26483329 DOI: 10.1016/j.ssnmr.2015.10.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2015] [Revised: 09/23/2015] [Accepted: 10/07/2015] [Indexed: 06/05/2023]
Abstract
One of the limiting factors to achieving highly resolved (1)H NMR spectra with (1)H homonuclear decoupling sequences is imperfections in the applied radiofrequency (RF) pulses, most notably phase transients and RF inhomogeneity. Through a series of simulations and solid-state NMR experiments, it is demonstrated that the combined effects of phase transients and RF inhomogeneity can be minimized by a combination of (i) restricting the sample to small volume of the rotor, (ii) by employing a super-cycled version of the DUMBO decoupling sequence, and (iii) by carefully adjusting the probe tuning such that the asymmetric component of phase transients is minimized. Under these optimal conditions, it was possible to clearly resolve two signals in the (1)H CRAMPS NMR spectrum of adamantane arising from the CH and CH2 protons in the molecule. It is proposed that adamantane could be a very useful setup sample for (1)H CRAMPS NMR as the two peaks are only resolved when the effects of RF inhomogeneity and phase transients are minimized.
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Affiliation(s)
- Darren H Brouwer
- Department of Chemistry, Redeemer University College, Ancaster, ON, Canada L9K 1J4.
| | - Matthew Horvath
- Department of Chemistry, Redeemer University College, Ancaster, ON, Canada L9K 1J4
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21
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Reddy GNM, Cook DS, Iuga D, Walton RI, Marsh A, Brown SP. An NMR crystallography study of the hemihydrate of 2', 3'-O-isopropylidineguanosine. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2015; 65:41-48. [PMID: 25686689 DOI: 10.1016/j.ssnmr.2015.01.001] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2014] [Revised: 01/05/2015] [Accepted: 01/08/2015] [Indexed: 06/04/2023]
Abstract
An NMR crystallography study of the hemihydrate of 2', 3'-O-isopropylidineguanosine (Gace) is presented, together with powder X-ray diffraction and thermogravimetric analysis. (1)H double-quantum and (14)N-(1)H HMQC spectra recorded at 850MHz and 75kHz MAS (using a JEOL 1mm probe) are presented together with a (1)H-(13)C refocused INEPT spectrum recorded at 500MHz and 12.5kHz MAS using eDUMBO-122(1)H homonuclear decoupling. NMR chemical shieldings are calculated using the GIPAW (gauge-including projector augmented wave) method; good two-dimensional agreement between calculation and experiment is observed for (13)C and (1)H chemical shifts for directly bonded CH and CH3 peaks. There are two Gace molecules in the asymmetric unit cell: differences in specific (1)H chemical shifts are rationalised in terms of the strength of CH-π and intermolecular hydrogen bonding interactions.
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Affiliation(s)
| | - Daniel S Cook
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, UK
| | - Dinu Iuga
- Department of Physics, University of Warwick, Coventry CV4 7AL, UK
| | - Richard I Walton
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, UK
| | - Andrew Marsh
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, UK
| | - Steven P Brown
- Department of Physics, University of Warwick, Coventry CV4 7AL, UK.
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22
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Rai RK, Singh C, Sinha N. Predominant role of water in native collagen assembly inside the bone matrix. J Phys Chem B 2014; 119:201-11. [PMID: 25530228 DOI: 10.1021/jp511288g] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Bone is one of the most intriguing biomaterials found in nature consisting of bundles of collagen helixes, hydroxyapatite, and water, forming an exceptionally tough, yet lightweight material. We present here an experimental tool to map water-dependent subtle changes in triple helical assembly of collagen protein in its absolute native environment. Collagen being the most abundant animal protein has been subject of several structural studies in last few decades, mostly on an extracted, overexpressed, and synthesized form of collagen protein. Our method is based on a (1)H detected solid-state nuclear magnetic resonance (ssNMR) experiment performed on native collagen protein inside intact bone matrix. Recent development in (1)H homonuclear decoupling sequences has made it possible to observe specific atomic resolution in a large complex system. The method consists of observing a natural-abundance two-dimensional (2D) (1)H/(13)C heteronuclear correlation (HETCOR) and(1)H double quantum-single quantum (DQ-SQ) correlation ssNMR experiment. The 2D NMR experiment maps three-dimensional assembly of native collagen protein and shows that extracted form of collagen protein is significantly different from protein in the native state. The method also captures native collagen subtle changes (of the order of ∼1.0 Å) due to dehydration and H/D exchange, giving an experimental tool to map small changes. The method has the potential to be of wide applicability to other collagen containing biomaterials.
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Affiliation(s)
- Ratan Kumar Rai
- Centre of Biomedical Research , SGPGIMS Campus, Raibarelly Road, Lucknow 226014, India
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23
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Berthomieu D, Gervais C, Renaudin G, Reinholdt M, Sene S, Smith ME, Bonhomme C, Laurencin D. Coordination Polymers Based on Alkylboronate Ligands: Synthesis, Characterization, and Computational Modelling. Eur J Inorg Chem 2014. [DOI: 10.1002/ejic.201402561] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Jayasubba Reddy Y, Agarwal V, Lesage A, Emsley L, Ramanathan KV. Heteronuclear proton double quantum-carbon single quantum scalar correlation in solids. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2014; 245:31-37. [PMID: 24921949 DOI: 10.1016/j.jmr.2014.05.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2014] [Revised: 05/01/2014] [Accepted: 05/05/2014] [Indexed: 06/03/2023]
Abstract
A new NMR experiment that exploits the advantages of proton double quantum (DQ) NMR through a proton DQ-carbon single quantum (SQ) correlation experiment in the solid state is proposed. Analogous to the previously proposed 2D (1)H (DQ)-(13)C refocused INEPT experiment (Webber et al., 2010), the correlation between (1)H and (13)C is achieved through scalar coupling evolution, while the double quantum coherence among protons is generated through dipolar couplings. However, the new experiment relies on (13)C transverse coherence for scalar transfer. The new experiment dubbed MAS-J-(1)H (DQ)-(13)C-HMQC, is particularly suited for unlabeled molecules and can provide higher sensitivity than its INEPT counterpart. The experiment is applied to four different samples.
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Affiliation(s)
- Y Jayasubba Reddy
- NMR Research Centre, Indian Institute of Science, Bangalore 560012, India; Department of Physics, Indian Institute of Science, Bangalore 560012, India
| | - Vipin Agarwal
- NMR Research Centre, Indian Institute of Science, Bangalore 560012, India.
| | - Anne Lesage
- Centre de RMN à Très Hauts Champs, Institut des Sciences Analytiques (CNRS/ENS Lyon/UCB Lyon 1), Université de Lyon, 69100 Villeurbanne, France
| | - Lyndon Emsley
- Centre de RMN à Très Hauts Champs, Institut des Sciences Analytiques (CNRS/ENS Lyon/UCB Lyon 1), Université de Lyon, 69100 Villeurbanne, France
| | - K V Ramanathan
- NMR Research Centre, Indian Institute of Science, Bangalore 560012, India.
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25
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Shen M, Trébosc J, Lafon O, Pourpoint F, Hu B, Chen Q, Amoureux JP. Improving the resolution in proton-detected through-space heteronuclear multiple quantum correlation NMR spectroscopy. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2014; 245:38-49. [PMID: 24929867 DOI: 10.1016/j.jmr.2014.05.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2014] [Revised: 05/02/2014] [Accepted: 05/05/2014] [Indexed: 06/03/2023]
Abstract
Connectivities and proximities between protons and low-gamma nuclei can be probed in solid-state NMR spectroscopy using two-dimensional (2D) proton-detected heteronuclear correlation, through Heteronuclear Multiple Quantum Correlation (HMQC) pulse sequence. The indirect detection via protons dramatically enhances the sensitivity. However, the spectra are often broadened along the indirect F1 dimension by the decay of heteronuclear multiple-quantum coherences under the strong (1)H-(1)H dipolar couplings. This work presents a systematic comparison of the performances of various decoupling schemes during the indirect t1 evolution period of dipolar-mediated HMQC (D-HMQC) experiment. We demonstrate that (1)H-(1)H dipolar decoupling sequences during t1, such as symmetry-based schemes, phase-modulated Lee-Goldburg (PMLG) and Decoupling Using Mind-Boggling Optimization (DUMBO), provide better resolution than continuous wave (1)H irradiation. We also report that high resolution requires the preservation of (1)H isotropic chemical shifts during the decoupling sequences. When observing indirectly broad spectra presenting numerous spinning sidebands, the D-HMQC sequence must be fully rotor-synchronized owing to the rotor-synchronized indirect sampling and dipolar recoupling sequence employed. In this case, we propose a solution to reduce artefact sidebands caused by the modulation of window delays before and after the decoupling application during the t1 period. Moreover, we show that (1)H-(1)H dipolar decoupling sequence using Smooth Amplitude Modulation (SAM) minimizes the t1-noise. The performances of the various decoupling schemes are assessed via numerical simulations and compared to 2D (1)H-{(13)C} D-HMQC experiments on [U-(13)C]-L-histidine⋅HCl⋅H2O at various magnetic fields and Magic Angle spinning (MAS) frequencies. Great resolution and sensitivity enhancements resulting from decoupling during t1 period enable the detection of heteronuclear correlation between aliphatic protons and ammonium (14)N sites in L-histidine⋅HCl⋅H2O.
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Affiliation(s)
- Ming Shen
- Physics Department & Shanghai Key Laboratory of Magnetic Resonance, East China Normal University, Shanghai 200062, China; UCCS, University Lille North of France, Villeneuve d'Ascq 59652, France
| | - J Trébosc
- UCCS, University Lille North of France, Villeneuve d'Ascq 59652, France
| | - O Lafon
- UCCS, University Lille North of France, Villeneuve d'Ascq 59652, France
| | - F Pourpoint
- UCCS, University Lille North of France, Villeneuve d'Ascq 59652, France
| | - Bingwen Hu
- Physics Department & Shanghai Key Laboratory of Magnetic Resonance, East China Normal University, Shanghai 200062, China
| | - Qun Chen
- Physics Department & Shanghai Key Laboratory of Magnetic Resonance, East China Normal University, Shanghai 200062, China
| | - J-P Amoureux
- Physics Department & Shanghai Key Laboratory of Magnetic Resonance, East China Normal University, Shanghai 200062, China; UCCS, University Lille North of France, Villeneuve d'Ascq 59652, France.
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27
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Domenici V, Lelli M, Cifelli M, Hamplova V, Marchetti A, Veracini CA. Conformational Properties and Orientational Order of a de Vries Liquid Crystal Investigated through NMR Spectroscopy. Chemphyschem 2014; 15:1485-95. [DOI: 10.1002/cphc.201301036] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2013] [Indexed: 11/05/2022]
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28
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Sene S, Berthomieu D, Donnadieu B, Richeter S, Vezzani J, Granier D, Bégu S, Mutin H, Gervais C, Laurencin D. A combined experimental-computational study of benzoxaborole crystal structures. CrystEngComm 2014. [DOI: 10.1039/c4ce00313f] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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29
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Chierotti MR, Gobetto R, Nervi C, Bacchi A, Pelagatti P, Colombo V, Sironi A. Probing Hydrogen Bond Networks in Half-Sandwich Ru(II) Building Blocks by a Combined 1H DQ CRAMPS Solid-State NMR, XRPD, and DFT Approach. Inorg Chem 2013; 53:139-46. [DOI: 10.1021/ic401762z] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Michele R. Chierotti
- Department of Chemistry and NIS
Centre of Excellence, University of Torino, Via P. Giuria 7, 10125 Torino, Italy
| | - Roberto Gobetto
- Department of Chemistry and NIS
Centre of Excellence, University of Torino, Via P. Giuria 7, 10125 Torino, Italy
| | - Carlo Nervi
- Department of Chemistry and NIS
Centre of Excellence, University of Torino, Via P. Giuria 7, 10125 Torino, Italy
| | - Alessia Bacchi
- Department of Chemistry, University of Parma, Parco Area
Scienze 17/A, 43124 Parma, Italy
| | - Paolo Pelagatti
- Department of Chemistry, University of Parma, Parco Area
Scienze 17/A, 43124 Parma, Italy
| | - Valentina Colombo
- Department of Chemistry, University of Milano, Via Golgi 19, 20133 Milano, Italy
| | - Angelo Sironi
- Department of Chemistry, University of Milano, Via Golgi 19, 20133 Milano, Italy
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Vogt FG, Williams GR, Copley RC. Solid-State NMR Analysis of a Boron-Containing Pharmaceutical Hydrochloride Salt. J Pharm Sci 2013; 102:3705-16. [DOI: 10.1002/jps.23679] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2013] [Revised: 06/26/2013] [Accepted: 07/01/2013] [Indexed: 01/20/2023]
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31
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Wang L, Zhou DH. High-resolution proton CRAMPS NMR using narrowband analog filters and postponed data acquisition. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2013; 234:141-146. [PMID: 23876780 PMCID: PMC3763936 DOI: 10.1016/j.jmr.2013.06.018] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2013] [Revised: 06/16/2013] [Accepted: 06/24/2013] [Indexed: 06/02/2023]
Abstract
Proton linewidths decrease with increasing magic-angle spinning (MAS) rates. However, without spin dilution by deuteration, even with the fastest MAS rates available today, the narrowest proton linewidths are obtained by using the combined rotation and multiple pulse spectroscopy (CRAMPS) method. Direct observation under windowed CRAMPS typically introduces several tens of times more noise, partly because wideband analog filters (e.g. 5 MHz) must be used or sometimes even bypassed. Here we report that it is possible to keep using narrowband analog filters (about 50 kHz cutoff frequency) in CRAMPS by taking advantage of the time delay caused by the filters, which is inversely proportional to the cutoff frequency. This delay coincides with typical CRAMPS cycle times, enabling acquisition of the data point in the next detection window. The noise of such CRAMPS spectra is only about 5 times larger than MAS-only spectra. This new method allows CRAMPS to be performed on systems that lack wideline hardware (wideband filters and fast ADCs), for example, older spectrometers originally intended for solution NMR.
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Affiliation(s)
- Liying Wang
- Department of Physics, Oklahoma State University, Stillwater, OK 74078, USA
- State Key Laboratory of Magnetic Resonance and Atomic Molecular Physics, Wuhan Center for Magnetic Resonance, Key Laboratory of Magnetic Resonance in Biological Systems, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China
| | - Donghua H. Zhou
- Department of Physics, Oklahoma State University, Stillwater, OK 74078, USA
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Vogt FG, Roberts-Skilton K, Kennedy-Gabb SA. A Solid-State NMR Study of Amorphous Ezetimibe Dispersions in Mesoporous Silica. Pharm Res 2013; 30:2315-31. [DOI: 10.1007/s11095-013-1075-7] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2013] [Accepted: 05/06/2013] [Indexed: 10/26/2022]
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Halse ME, Emsley L. Improved Phase-Modulated Homonuclear Dipolar Decoupling for Solid-State NMR Spectroscopy from Symmetry Considerations. J Phys Chem A 2013; 117:5280-90. [DOI: 10.1021/jp4038733] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Meghan E. Halse
- Centre de RMN à Très
Hauts Champs, Institut
de Sciences Analytiques (CNRS/ENS-Lyon/UCB Lyon 1), Université de Lyon, 5 rue de la Doua, 69100 Villeurbanne, France
| | - Lyndon Emsley
- Centre de RMN à Très
Hauts Champs, Institut
de Sciences Analytiques (CNRS/ENS-Lyon/UCB Lyon 1), Université de Lyon, 5 rue de la Doua, 69100 Villeurbanne, France
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34
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Chierotti MR, Gobetto R. NMR crystallography: the use of dipolar interactions in polymorph and co-crystal investigation. CrystEngComm 2013. [DOI: 10.1039/c3ce41026a] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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35
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Sene S, Bouchevreau B, Martineau C, Gervais C, Bonhomme C, Gaveau P, Mauri F, Bégu S, Mutin PH, Smith ME, Laurencin D. Structural study of calcium phosphonates: a combined synchrotron powder diffraction, solid-state NMR and first-principle calculations approach. CrystEngComm 2013. [DOI: 10.1039/c3ce40981c] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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36
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Hydrogen bond interaction and dynamics in PMMA/PVPh polymer blends as revealed by advanced solid-state NMR. POLYMER 2013. [DOI: 10.1016/j.polymer.2012.11.048] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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37
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Abstract
Solid-state NMR spectroscopy proved to be a versatile tool for characterization of structure and dynamics of complex biochemical systems. In particular, magic angle spinning (MAS) solid-state NMR came to maturity for application towards structural elucidation of biological macromolecules. Current challenges in applying solid-state NMR as well as progress achieved recently will be discussed in the following chapter focusing on conceptual aspects important for structural elucidation of proteins.
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Affiliation(s)
- Henrik Müller
- Institute of Physical Biology, Heinrich-Heine-University of Düsseldorf, 40225, Düsseldorf, Germany
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38
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Boronate Ligands in Materials: Determining Their Local Environment by Using a Combination of IR/Solid-State NMR Spectroscopies and DFT Calculations. Chemistry 2012; 19:880-91. [DOI: 10.1002/chem.201203560] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2012] [Indexed: 11/07/2022]
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Abstract
Nuclear Magnetic Resonance (NMR) spectroscopy is a well-established method for the investigation of various types of porous materials. During the past decade, metal–organic frameworks have attracted increasing research interest. Solid-state NMR spectroscopy has rapidly evolved into an important tool for the study of the structure, dynamics and flexibility of these materials, as well as for the characterization of host–guest interactions with adsorbed species such as xenon, carbon dioxide, water, and many others. The present review introduces and highlights recent developments in this rapidly growing field.
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40
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Bonhomme C, Gervais C, Babonneau F, Coelho C, Pourpoint F, Azaïs T, Ashbrook SE, Griffin JM, Yates JR, Mauri F, Pickard CJ. First-principles calculation of NMR parameters using the gauge including projector augmented wave method: a chemist's point of view. Chem Rev 2012; 112:5733-79. [PMID: 23113537 DOI: 10.1021/cr300108a] [Citation(s) in RCA: 312] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Christian Bonhomme
- Laboratoire de Chimie de la Matière Condensée de Paris, Université Pierre et Marie Curie, CNRS UMR, Collège de France, France.
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41
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Lu X, Lafon O, Trébosc J, Thankamony ASL, Nishiyama Y, Gan Z, Madhu PK, Amoureux JP. Detailed analysis of the TIMES and TIMES0 high-resolution MAS methods for high-resolution proton NMR. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2012; 223:219-227. [PMID: 22985982 DOI: 10.1016/j.jmr.2012.07.015] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2012] [Revised: 07/19/2012] [Accepted: 07/22/2012] [Indexed: 06/01/2023]
Abstract
We analyze and compare the specifications of TIMES and TIMES(0) proton high-resolution NMR methods for solid-state samples. This comparison is performed in terms of resolution versus magic-angle spinning (MAS) spinning speed, ν(R), rf-field amplitude, ν(1), and tilt-angle for the effective rf-field, θ(p). The chemical-shift and homo-nuclear dipolar scaling factors are calculated for both methods. For all MAS speeds, the best resolution is always observed with rf-field of ν(1)≈120-130 kHz. At slow MAS speed (ν(R)≤10 kHz), the best resolution is observed for a tilt-angle of θ(P)≈90°. At moderate spinning speed (15≤ν(R)≤35 kHz), θ(P)≈55° gives the best resolution. At higher MAS speed (ν(R)≥60 kHz), with TIMES and TIMES(0) the best resolution is obtained for θ(P)≤40°; but we then recommend TIMES(0), owing to its simpler set-up. We also show that in addition to the usual high rf-field regime (ν(1)≈120-130 kHz), another low rf-regime (ν(1)≈40-50 kHz) exists at MAS speed higher than ν(R)≥60 kHz, which also gives a good (1)H resolution. This low rf-regime should be useful for multi-dimensional analyses of bio-molecules with (1)H detection under high-resolution, in order to limit the heating of the sample.
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Affiliation(s)
- Xingyu Lu
- UCCS (CNRS-8181), University Lille North of France, Villeneuve d'Ascq 59652, France
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42
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Unique evolution of spatial and dynamic heterogeneities on the glass transition behavior of PVPh/PEO blends. CHINESE JOURNAL OF POLYMER SCIENCE 2012. [DOI: 10.1007/s10118-012-1182-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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43
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Odedra S, Wimperis S. Improved background suppression in ¹H MAS NMR using composite pulses. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2012; 221:41-50. [PMID: 22743541 DOI: 10.1016/j.jmr.2012.05.010] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2012] [Revised: 05/08/2012] [Accepted: 05/14/2012] [Indexed: 06/01/2023]
Abstract
A well known feature of ¹H MAS NMR spectroscopy, particularly of solids where the concentration of ¹H nuclei is low, is the presence in the spectrum of a significant broad "background" signal arising from ¹H nuclei that are outside the MAS rotor and radiofrequency coil, probably located on the surfaces of the static components of the probehead. A popular method of suppressing this unwanted signal is the "depth pulse" method, consisting of a 90° pulse followed by one or two 180° pulses that are phase cycled according to the "Exorcycle" scheme, which removes signal associated with imperfect 180° pulses. Consequently, only spins in the centre of the radiofrequency coil contribute to the ¹H MAS spectrum, while those experiencing a low B₁ field outside the coil are suppressed. Although very effective at removing background signal from the spectrum, one drawback with this approach is that significant loss of the desired signal from the sample also occurs. Here we investigate the ¹H background suppression problem and, in particular, the use of novel antisymmetric passband composite pulses to replace the simple pulses in a depth pulse experiment. We show that it is possible to improve the intensity of the ¹H signals of interest while still maintaining effective background suppression. We expect that these results will be relevant to ¹H MAS NMR studies of, for example, nominally perdeuterated biological samples or nominally anhydrous inorganic materials.
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Affiliation(s)
- Smita Odedra
- School of Chemistry and WestCHEM, University of Glasgow, Glasgow G12 8QQ, United Kingdom
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44
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Li S, Su Y, Hong M. Intramolecular 1H-13C distance measurement in uniformly 13C, 15N labeled peptides by solid-state NMR. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2012; 45-46:51-58. [PMID: 22749432 PMCID: PMC3414644 DOI: 10.1016/j.ssnmr.2012.06.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2012] [Revised: 04/29/2012] [Accepted: 06/05/2012] [Indexed: 06/01/2023]
Abstract
A (1)H-(13)C frequency-selective REDOR (FS-REDOR) experiment is developed for measuring intramolecular (1)H-(13)C distances in uniformly (13)C, (15)N-labeled molecules. Theory and simulations show that the experiment removes the interfering homonuclear (1)H-(1)H, (13)C-(13)C and heteronuclear (1)H-(15)N, (13)C-(15)N dipolar interactions while retaining the desired heteronuclear (1)H-(13)C dipolar interaction. Our results indicate that this technique, combined with the numerical fitting, can be used to measure a (1)H-(13)C distance up to 5Å. We also demonstrate that the measured intramolecular (1)H-(13)C distances are useful to determine dihedral angles in proteins.
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Affiliation(s)
- Shenhui Li
- Wuhan Institute of Physics and Mathematics, the Chinese Academy of Sciences, Wuhan 430071, China
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
| | - Yongchao Su
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
| | - Mei Hong
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
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45
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46
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Reif B. Ultra-high resolution in MAS solid-state NMR of perdeuterated proteins: implications for structure and dynamics. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2012; 216:1-12. [PMID: 22280934 DOI: 10.1016/j.jmr.2011.12.017] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2011] [Revised: 12/20/2011] [Accepted: 12/22/2011] [Indexed: 05/14/2023]
Abstract
High resolution proton spectra are obtained in MAS solid-state NMR in case samples are prepared using perdeuterated protein and D(2)O in the recrystallization buffer. Deuteration reduces drastically (1)H, (1)H dipolar interactions and allows to obtain amide proton line widths on the order of 20 Hz. Similarly, high-resolution proton spectra of aliphatic groups can be obtained if specifically labeled precursors for biosynthesis of methyl containing side chains are used, or if limited amounts of H(2)O in the bacterial growth medium is employed. This review summarizes recent spectroscopic developments to access structure and dynamics of biomacromolecules in the solid-state, and shows a number of applications to amyloid fibrils and membrane proteins.
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Affiliation(s)
- Bernd Reif
- Munich Center for Integrated Protein Science (CIPSM), Department Chemie, Technische Universität München, Lichtenbergstr. 4, 85747 Garching, Germany.
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47
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Vogt FG, Williams GR. Analysis of a Nanocrystalline Polymer Dispersion of Ebselen Using Solid-State NMR, Raman Microscopy, and Powder X-ray Diffraction. Pharm Res 2012; 29:1866-81. [DOI: 10.1007/s11095-012-0713-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2012] [Accepted: 02/15/2012] [Indexed: 11/29/2022]
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48
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Song C, Lang C, Mailliet J, Hughes J, Gärtner W, Matysik J. Exploring Chromophore-Binding Pocket: High-Resolution Solid-State H-C Interfacial Correlation NMR Spectra with Windowed PMLG Scheme. APPLIED MAGNETIC RESONANCE 2012; 42:79-88. [PMID: 22303079 PMCID: PMC3260431 DOI: 10.1007/s00723-011-0196-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2010] [Revised: 01/21/2011] [Indexed: 05/26/2023]
Abstract
High-resolution two-dimensional (2D) (1)H-(13)C heteronuclear correlation spectra are recorded for selective observation of interfacial 3-5.5 Å contacts of the uniformly (13)C-labeled phycocyanobilin (PCB) chromophore with its unlabeled binding pocket. The experiment is based on a medium- and long-distance heteronuclear correlation (MELODI-HETCOR) method. For improving (1)H spectral resolution, a windowed phase-modulated Lee-Goldburg (wPMLG) decoupling scheme is applied during the t(1) evolution period. Our approach allows for identification of chromophore-protein interactions, in particular for elucidation of the hydrogen-bonding networks and charge distributions within the chromophore-binding pocket. The resulting pulse sequence is tested on the cyanobacterial (Cph1) phytochrome sensory module (residues 1-514, Cph1Δ2) containing uniformly (13)C- and (15)N-labeled PCB chromophore (u-[(13)C,(15)N]-PCB-Cph1Δ2) at 17.6 T.
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Affiliation(s)
- Chen Song
- Leids Instituut voor Chemisch Onderzoek, Universiteit Leiden, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Christina Lang
- Pflanzenphysiologie, Justus-Liebig-Universität, Senckenbergstraße 3, 35390 Giessen, Germany
| | - Jo Mailliet
- Pflanzenphysiologie, Justus-Liebig-Universität, Senckenbergstraße 3, 35390 Giessen, Germany
| | - Jon Hughes
- Pflanzenphysiologie, Justus-Liebig-Universität, Senckenbergstraße 3, 35390 Giessen, Germany
| | - Wolfgang Gärtner
- Max-Planck-Institut für Bioanorganische Chemie, Stiftstraße 34–36, 45470 Mülheim an der Ruhr, Germany
| | - Jörg Matysik
- Leids Instituut voor Chemisch Onderzoek, Universiteit Leiden, P.O. Box 9502, 2300 RA Leiden, The Netherlands
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49
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Reif B. Deuterated peptides and proteins: structure and dynamics studies by MAS solid-state NMR. Methods Mol Biol 2012; 831:279-301. [PMID: 22167680 DOI: 10.1007/978-1-61779-480-3_16] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Perdeuteration and back substitution of exchangeable protons in microcrystalline proteins, in combination with recrystallization from D(2)O-containing buffers, significantly reduce (1)H, (1)H dipolar interactions. This way, amide proton line widths on the order of 20 Hz are obtained. Aliphatic protons are accessible either via specifically protonated precursors or by using low amounts of H(2)O in the bacterial growth medium. The labeling scheme enables characterization of structure and dynamics in the solid-state without dipolar truncation artifacts.
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Affiliation(s)
- Bernd Reif
- Munich Center for Integrated Protein Science (CIPSM) at Department Chemie, Technische Universität München, Garching, Germany.
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50
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Nishiyama Y, Lu X, Trébosc J, Lafon O, Gan Z, Madhu PK, Amoureux JP. Practical choice of ¹H-¹H decoupling schemes in through-bond ¹H-{X} HMQC experiments at ultra-fast MAS. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2012; 214:151-158. [PMID: 22130518 DOI: 10.1016/j.jmr.2011.10.014] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2011] [Revised: 10/05/2011] [Accepted: 10/28/2011] [Indexed: 05/31/2023]
Abstract
Three (1)H-(1)H homonuclear dipolar decoupling schemes for (1)H indirect detection measurements at very fast MAS are compared. The sequences require the following conditions: (i) being operable at very fast MAS, (ii) a long T(2)(') value, (iii) a large scaling factor, (iv) a small number of adjustable parameters, (v) an acquisition window, (vi) a low rf-power requirement, and (vii) a z-rotation feature. To satisfy these conditions a modified sequence named TIlted Magic-Echo Sandwich with zero degree sandwich pulse (TIMES(0)) is introduced. The basic elements of TIMES(0) consist of one sampling window and two phase-ramped irradiations, which realize alternating positive and negative 360° rotations of (1)H magnetization around an effective field tilted with an angle θ from the B(0) axis. The TIMES(0) sequence benefits from very large chemical shift scaling factors at ultra-fast MAS that reach κ(cs)=0.90 for θ=25° at ν(r)=80kHz MAS and only four adjustable parameters, resulting in easy setup. Long κ(cs)T(2)(') values, where T(2)(') is a irreversible proton transverse relaxation time, greatly enhance the sensitivity in (1)H-{(13)C} through-bond J-HMQC (Heteronuclear Multiple-Quantum Coherence) measurements with (1)H-(1)H decoupling during magnetization transfer periods. Although similar sensitivity can be obtained with through-space D-HMQC sequences, in which (13)C-(1)H dipolar interactions are recoupled, J-HMQC experiments incorporating (1)H-(1)H decoupling benefit from lower t(1)-noise, more uniform excitation of both CH, CH(2) and CH(3) moieties, and easier identification of through-bond connectivities.
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Affiliation(s)
- Yusuke Nishiyama
- JEOL RESONANCE Inc., 3-1-2 Musashino, Akishima, Tokyo 196-8558, Japan.
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