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Ranke PS, Pepke ML, Søraker JS, David G, Araya‐Ajoy YG, Wright J, Nafstad ÅM, Rønning B, Pärn H, Ringsby TH, Jensen H, Sæther B. Long-distance dispersal in the short-distance dispersing house sparrow ( Passer domesticus). Ecol Evol 2024; 14:e11356. [PMID: 38694748 PMCID: PMC11056847 DOI: 10.1002/ece3.11356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Revised: 04/05/2024] [Accepted: 04/12/2024] [Indexed: 05/04/2024] Open
Abstract
The house sparrow (Passer domesticus) is a small passerine known to be highly sedentary. Throughout a 30-year capture-mark-recapture study, we have obtained occasional reports of recoveries far outside our main metapopulation study system, documenting unusually long dispersal distances. Our records constitute the highest occurrence of long-distance dispersal events recorded for this species in Scandinavia. Such long-distance dispersals radically change the predicted distribution of dispersal distances and connectedness for our study metapopulation. Moreover, it reveals a much greater potential for colonization than formerly recorded for the house sparrow, which is an invasive species across four continents. These rare and occasional long-distance dispersal events are challenging to document but may have important implications for the genetic composition of small and isolated populations and for our understanding of dispersal ecology and evolution.
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Affiliation(s)
- Peter S. Ranke
- Centre for Biodiversity Dynamics (CBD), Department of BiologyNorwegian University of Science and Technology (NTNU)TrondheimNorway
- BirdLife NorwayTrondheimNorway
| | - Michael L. Pepke
- Centre for Biodiversity Dynamics (CBD), Department of BiologyNorwegian University of Science and Technology (NTNU)TrondheimNorway
- Center for Evolutionary Hologenomics, Globe Institute, Faculty of Health and Medical SciencesUniversity of CopenhagenCopenhagenDenmark
| | - Jørgen S. Søraker
- Centre for Biodiversity Dynamics (CBD), Department of BiologyNorwegian University of Science and Technology (NTNU)TrondheimNorway
- Edward Grey Institute, Department of BiologyUniversity of OxfordOxfordUK
| | - Gabriel David
- Centre for Biodiversity Dynamics (CBD), Department of BiologyNorwegian University of Science and Technology (NTNU)TrondheimNorway
- Animal Ecology, Department of Ecology and GeneticsUppsala UniversityUppsalaSweden
| | - Yimen G. Araya‐Ajoy
- Centre for Biodiversity Dynamics (CBD), Department of BiologyNorwegian University of Science and Technology (NTNU)TrondheimNorway
| | - Jonathan Wright
- Centre for Biodiversity Dynamics (CBD), Department of BiologyNorwegian University of Science and Technology (NTNU)TrondheimNorway
| | - Ådne M. Nafstad
- Centre for Biodiversity Dynamics (CBD), Department of BiologyNorwegian University of Science and Technology (NTNU)TrondheimNorway
| | - Bernt Rønning
- Centre for Biodiversity Dynamics (CBD), Department of BiologyNorwegian University of Science and Technology (NTNU)TrondheimNorway
- Department of Teacher EducationNorwegian University of Science and Technology (NTNU)TrondheimNorway
| | - Henrik Pärn
- Centre for Biodiversity Dynamics (CBD), Department of BiologyNorwegian University of Science and Technology (NTNU)TrondheimNorway
- Department of Aquatic Resources (SLU Aqua)Swedish University of Agricultural SciencesLysekilSweden
| | - Thor Harald Ringsby
- Centre for Biodiversity Dynamics (CBD), Department of BiologyNorwegian University of Science and Technology (NTNU)TrondheimNorway
| | - Henrik Jensen
- Centre for Biodiversity Dynamics (CBD), Department of BiologyNorwegian University of Science and Technology (NTNU)TrondheimNorway
| | - Bernt‐Erik Sæther
- Centre for Biodiversity Dynamics (CBD), Department of BiologyNorwegian University of Science and Technology (NTNU)TrondheimNorway
- The Gjærevoll Centre, Department of BiologyNorwegian University of Science and Technology (NTNU)TrondheimNorway
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Abstract
AbstractTranslocation of conspecific individuals to reduce extinction risk of small, isolated populations and prevent genetic depletion is a powerful tool in conservation biology. An important question is how the translocated individuals influence the long-term genetic composition of the recipient population. Here, we experimentally reinforced a house sparrow (Passer domesticus) population, and examined the impact of this translocation on allele frequencies, levels of heterozygosity and genetic differentiation over six cohorts. We found no permanent increase in the mean number of alleles across loci or levels of observed heterozygosity, but a few alleles private to the translocated individuals remained in the population and we found a short-term increase in heterozygosity. Consequently, genetic differentiation of the recipient population compared to the genetic composition prior to reinforcement was small. The limited genetic impact was due to combined effects of a small probability of establishment and low mating success for the translocated individuals, together with increased genetic drift in the recipient population. Our findings emphasize the importance of selection and genetic drift as forces that may decrease the genetic contribution of reinforcement, especially in small populations. Conservation managers should aim to improve habitat quality in the recipient population to reduce genetic drift following translocation and thereby avoid the need for continued reinforcement. Furthermore, by facilitating establishment success and selecting individuals expected to have high mating success, possibly indicated by sexually selected traits, genetic contribution of released individuals is increased which in turn will decrease reproductive skew and genetic drift.
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3
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Tarkhnishvili D, Barateli N, Murtskhvaladze M, Iankoshvili G. Estimating phenotypic heritability of sexual and unisexually reproducing rock lizards (genus Darevskia). ZOOL ANZ 2020. [DOI: 10.1016/j.jcz.2020.02.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Muff S, Niskanen AK, Saatoglu D, Keller LF, Jensen H. Animal models with group-specific additive genetic variances: extending genetic group models. Genet Sel Evol 2019; 51:7. [PMID: 30819110 PMCID: PMC6394059 DOI: 10.1186/s12711-019-0449-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Accepted: 02/07/2019] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The animal model is a key tool in quantitative genetics and has been used extensively to estimate fundamental parameters, such as additive genetic variance or heritability. An implicit assumption of animal models is that all founder individuals derive from a single population. This assumption is commonly violated, for instance in crossbred livestock or when a meta-population is split into genetically differentiated subpopulations. Ignoring that base populations are genetically heterogeneous and thus split into different 'genetic groups' may lead to biased parameter estimates, especially for additive genetic variance. To avoid such biases, genetic group animal models, which account for the presence of more than one genetic group, have been proposed. Unfortunately, the method to date is only computationally feasible when the breeding values of the groups are allowed to differ in their means, but not in their variances. RESULTS We present an extension of the animal model that permits estimation of group-specific additive genetic variances. This is achieved by employing group-specific relatedness matrices for the breeding value components to different genetic groups. We derive these matrices by decomposing the full relatedness matrix via the generalized Cholesky decomposition, and by scaling the respective matrix components for each group. We propose a computationally convenient approximation for the matrix component that encodes for the Mendelian sampling variance, and show that this approximation is not critical. In addition, we explain why segregation variances are often negligible when analyzing the complex polygenic traits that are frequently the focus of evolutionary ecologists and animal breeders. Simulations and an example from an insular meta-population of house sparrows in Norway with three distinct genetic groups illustrate that the method is successful in estimating group-specific additive genetic variances, and that segregation variances are indeed negligible in the empirical example. CONCLUSIONS Quantifying differences in additive genetic variance within and among populations is of major biological interest in ecology, evolution, and animal and plant breeding. The proposed method allows to estimate such differences for subpopulations that form a connected set of populations, and may thus also be useful to study temporal or spatial variation of additive genetic variances.
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Affiliation(s)
- Stefanie Muff
- Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, Zurich, Switzerland. .,Department of Biostatistics, Epidemiology, Biostatistics and Prevention Institute, University of Zurich, Hirschengraben 84, Zurich, Switzerland.
| | - Alina K Niskanen
- Department of Biology, Centre for Biodiversity Dynamics, Norwegian University of Science and Technology, Høgskoleringen 5, Trondheim, Norway.,Department of Ecology and Genetics, University of Oulu, P.O. Box 3000, Oulu, Finland
| | - Dilan Saatoglu
- Department of Biology, Centre for Biodiversity Dynamics, Norwegian University of Science and Technology, Høgskoleringen 5, Trondheim, Norway
| | - Lukas F Keller
- Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, Zurich, Switzerland.,Zoological Museum, University of Zurich, Karl-Schmid-Strasse 4, Zurich, Switzerland
| | - Henrik Jensen
- Department of Biology, Centre for Biodiversity Dynamics, Norwegian University of Science and Technology, Høgskoleringen 5, Trondheim, Norway
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5
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Geue JC, Vágási CI, Schweizer M, Pap PL, Thomassen HA. Environmental selection is a main driver of divergence in house sparrows ( Passer domesticus) in Romania and Bulgaria. Ecol Evol 2016; 6:7954-7964. [PMID: 27891219 PMCID: PMC5108248 DOI: 10.1002/ece3.2509] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2016] [Revised: 08/24/2016] [Accepted: 09/06/2016] [Indexed: 01/25/2023] Open
Abstract
Both neutral and adaptive evolutionary processes can cause population divergence, but their relative contributions remain unclear. We investigated the roles of these processes in population divergence in house sparrows (Passer domesticus) from Romania and Bulgaria, regions characterized by high landscape heterogeneity compared to Western Europe. We asked whether morphological divergence, complemented with genetic data in this human commensal species, was best explained by environmental variation, geographic distance, or landscape resistance—the effort it takes for an individual to disperse from one location to the other—caused by either natural or anthropogenic barriers. Using generalized dissimilarity modeling, a matrix regression technique that fits biotic beta diversity to both environmental predictors and geographic distance, we found that a small set of climate and vegetation variables explained up to ~30% of the observed divergence, whereas geographic and resistance distances played much lesser roles. Our results are consistent with signals of selection on morphological traits and of isolation by adaptation in genetic markers, suggesting that selection by natural environmental conditions shapes population divergence in house sparrows. Our study thus contributes to a growing body of evidence that adaptive evolution may be a major driver of diversification.
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Affiliation(s)
- Julia C Geue
- Comparative Zoology Institute for Evolution and Ecology University of Tübingen Tübingen Germany
| | - Csongor I Vágási
- MTA-DE 'Lendület' Behavioural Ecology Research Group Department of Evolutionary Zoology and Human Biology University of Debrecen Debrecen Hungary; Evolutionary Ecology Group Hungarian Department of Biology and Ecology Babeş-Bolyai University Cluj- Napoca Romania
| | - Mona Schweizer
- Animal Physiological Ecology Institute for Evolution and Ecology University of Tübingen Tübingen Germany
| | - Péter L Pap
- MTA-DE 'Lendület' Behavioural Ecology Research Group Department of Evolutionary Zoology and Human Biology University of Debrecen Debrecen Hungary; Evolutionary Ecology Group Hungarian Department of Biology and Ecology Babeş-Bolyai University Cluj- Napoca Romania
| | - Henri A Thomassen
- Comparative Zoology Institute for Evolution and Ecology University of Tübingen Tübingen Germany
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Dussex N, Sainsbury J, Moorhouse R, Jamieson IG, Robertson BC. Evidence for Bergmann’s Rule and Not Allopatric Subspeciation in the Threatened Kaka ( Nestor meridionalis ). J Hered 2015; 106:679-91. [DOI: 10.1093/jhered/esv079] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Accepted: 09/10/2015] [Indexed: 11/13/2022] Open
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7
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Forsman A, Tibblin P, Berggren H, Nordahl O, Koch-Schmidt P, Larsson P. Pike Esox lucius as an emerging model organism for studies in ecology and evolutionary biology: a review. JOURNAL OF FISH BIOLOGY 2015; 87:472-9. [PMID: 26077107 PMCID: PMC4744780 DOI: 10.1111/jfb.12712] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2015] [Accepted: 04/23/2015] [Indexed: 05/13/2023]
Abstract
The pike Esox lucius is a large, long-lived, iteroparous, top- predator fish species with a circumpolar distribution that occupies a broad range of aquatic environments. This study reports on a literature search and demonstrates that the publication rate of E. lucius research increases both in absolute terms and relative to total scientific output, and that the focus of investigation has changed over time from being dominated by studies on physiology and disease to being gradually replaced by studies on ecology and evolution. Esox lucius can be exploited as a model in future research for identifying causes and consequences of phenotypic and genetic variation at the levels of individuals, populations and species as well as for investigating community processes.
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Affiliation(s)
- A Forsman
- Evolution in Microbial Model Systems, EEMiS, Department of Biology, Environmental Science, Linnaeus University, SE-391 82, Kalmar, Sweden
| | - P Tibblin
- Evolution in Microbial Model Systems, EEMiS, Department of Biology, Environmental Science, Linnaeus University, SE-391 82, Kalmar, Sweden
| | - H Berggren
- Evolution in Microbial Model Systems, EEMiS, Department of Biology, Environmental Science, Linnaeus University, SE-391 82, Kalmar, Sweden
| | - O Nordahl
- Evolution in Microbial Model Systems, EEMiS, Department of Biology, Environmental Science, Linnaeus University, SE-391 82, Kalmar, Sweden
| | - P Koch-Schmidt
- Evolution in Microbial Model Systems, EEMiS, Department of Biology, Environmental Science, Linnaeus University, SE-391 82, Kalmar, Sweden
| | - P Larsson
- Evolution in Microbial Model Systems, EEMiS, Department of Biology, Environmental Science, Linnaeus University, SE-391 82, Kalmar, Sweden
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8
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Barley AJ, Monnahan PJ, Thomson RC, Grismer LL, Brown RM. Sun skink landscape genomics: assessing the roles of micro-evolutionary processes in shaping genetic and phenotypic diversity across a heterogeneous and fragmented landscape. Mol Ecol 2015; 24:1696-712. [DOI: 10.1111/mec.13151] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2014] [Revised: 02/27/2015] [Accepted: 03/10/2015] [Indexed: 01/25/2023]
Affiliation(s)
- Anthony J. Barley
- Department of Ecology and Evolutionary Biology; University of Kansas; Lawrence KS 66045 USA
| | - Patrick J. Monnahan
- Department of Ecology and Evolutionary Biology; University of Kansas; Lawrence KS 66045 USA
| | - Robert C. Thomson
- Department of Biology; University of Hawai'i at Mānoa; Honolulu HI 96822 USA
| | - L. Lee Grismer
- Department of Biology; La Sierra University; Riverside CA 92515 USA
| | - Rafe M. Brown
- Department of Ecology and Evolutionary Biology; University of Kansas; Lawrence KS 66045 USA
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9
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Zanella LN, DeFaveri J, Zanella D, Merilä J, Šanda R, Mrakovčić M. Does predation drive morphological differentiation among Adriatic populations of the three-spined stickleback? Biol J Linn Soc Lond 2015. [DOI: 10.1111/bij.12491] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Linda N. Zanella
- Department of Zoology; Faculty of Science; University of Zagreb; Rooseveltov trg 6 10000 Zagreb Croatia
| | - Jacquelin DeFaveri
- Ecological Genetic Research Unit; Department of Biological Sciences; University of Helsinki; PO Box 65 FI-00014 Helsinki Finland
| | - Davor Zanella
- Department of Zoology; Faculty of Science; University of Zagreb; Rooseveltov trg 6 10000 Zagreb Croatia
| | - Juha Merilä
- Ecological Genetic Research Unit; Department of Biological Sciences; University of Helsinki; PO Box 65 FI-00014 Helsinki Finland
| | - Radek Šanda
- Department of Zoology; National Museum; Václavské nám. 68 11579 Praha 1 Czech Republic
| | - Milorad Mrakovčić
- Department of Zoology; Faculty of Science; University of Zagreb; Rooseveltov trg 6 10000 Zagreb Croatia
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10
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Monzón-Argüello C, Consuegra S, Gajardo G, Marco-Rius F, Fowler DM, DeFaveri J, Garcia de Leaniz C. Contrasting patterns of genetic and phenotypic differentiation in two invasive salmonids in the southern hemisphere. Evol Appl 2014; 7:921-36. [PMID: 25469171 PMCID: PMC4211722 DOI: 10.1111/eva.12188] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2014] [Accepted: 06/15/2014] [Indexed: 01/31/2023] Open
Abstract
Invasion success may be expected to increase with residence time (i.e., time since first introduction) and secondary releases (i.e., those that follow the original introduction), but this has rarely been tested in natural fish populations. We compared genetic and phenotypic divergence in rainbow trout and brown trout in Chile and the Falkland Islands to test the prediction that adaptive divergence, measured as PST/FST, would increase with residence time and secondary releases. We also explored whether interspecific competition between invaders could drive phenotypic divergence. Residence time had no significant effect on genetic diversity, phenotypic divergence, effective population size, or signatures of expansion of invasive trout. In contrast, secondary releases had a major effect on trout invasions, and rainbow trout populations mostly affected by aquaculture escapees showed significant divergence from less affected populations. Coexistence with brown trout had a positive effect on phenotypic divergence of rainbow trout. Our results highlight an important role of secondary releases in shaping fish invasions, but do not support the contention that older invaders are more differentiated than younger ones. They also suggest that exotic trout may not have yet developed local adaptations in these recently invaded habitats, at least with respect to growth-related traits.
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Affiliation(s)
| | | | - Gonzalo Gajardo
- Laboratorio de Genética, Acuicultura y Biodiversidad, Universidad de Los Lagos Osorno, Chile
| | | | | | - Jacquelin DeFaveri
- Ecological Genetics Research Unit, Department of Biosciences, University of Helsinki Helsinki, Finland
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11
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Brommer JE, Hanski IK, Kekkonen J, Väisänen RA. Size differentiation in Finnish house sparrows follows Bergmann's rule with evidence of local adaptation. J Evol Biol 2014; 27:737-47. [DOI: 10.1111/jeb.12342] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2013] [Revised: 01/09/2014] [Accepted: 01/18/2014] [Indexed: 11/30/2022]
Affiliation(s)
- J. E. Brommer
- Department of Biology; University of Turku; Turku Finland
- Aronia Research and Development Institute; Åbo Akademi and Novia University of Applied Sciences; Ekenäs Finland
| | - I. K. Hanski
- Finnish Museum of Natural History; Helsinki Finland
| | - J. Kekkonen
- Department of Biosciences; University of Helsinki; Helsinki Finland
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12
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DeFaveri J, Merilä J. Evidence for adaptive phenotypic differentiation in Baltic Sea sticklebacks. J Evol Biol 2013; 26:1700-15. [DOI: 10.1111/jeb.12168] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2013] [Revised: 03/26/2013] [Accepted: 03/27/2013] [Indexed: 12/26/2022]
Affiliation(s)
- J. DeFaveri
- Ecological Genetics Research Unit; Department of Biosciences; University of Helsinki; Helsinki Finland
| | - J. Merilä
- Ecological Genetics Research Unit; Department of Biosciences; University of Helsinki; Helsinki Finland
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13
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Hagen IJ, Billing AM, Rønning B, Pedersen SA, Pärn H, Slate J, Jensen H. The easy road to genome‐wide medium density
SNP
screening in a non‐model species: development and application of a 10 K
SNP
‐chip for the house sparrow (
P
asser domesticus
). Mol Ecol Resour 2013; 13:429-39. [DOI: 10.1111/1755-0998.12088] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2012] [Revised: 01/11/2013] [Accepted: 01/15/2013] [Indexed: 11/30/2022]
Affiliation(s)
- Ingerid J. Hagen
- Department of Biology Centre for Biodiversity Dynamics Norwegian University of Science and Technology Trondheim NO‐7491 Norway
| | - Anna M. Billing
- Department of Biology Centre for Biodiversity Dynamics Norwegian University of Science and Technology Trondheim NO‐7491 Norway
| | - Bernt Rønning
- Department of Biology Centre for Biodiversity Dynamics Norwegian University of Science and Technology Trondheim NO‐7491 Norway
| | - Sindre A. Pedersen
- Department of Biology Norwegian University of Science and Technology Trondheim NO‐7491 Norway
| | - Henrik Pärn
- Department of Biology Centre for Biodiversity Dynamics Norwegian University of Science and Technology Trondheim NO‐7491 Norway
| | - Jon Slate
- Department of Animal and Plant Sciences University of Sheffield Western Bank Sheffield S10 2TN UK
| | - Henrik Jensen
- Department of Biology Centre for Biodiversity Dynamics Norwegian University of Science and Technology Trondheim NO‐7491 Norway
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Leinonen T, McCairns RJS, O'Hara RB, Merilä J. Q(ST)-F(ST) comparisons: evolutionary and ecological insights from genomic heterogeneity. Nat Rev Genet 2013; 14:179-90. [PMID: 23381120 DOI: 10.1038/nrg3395] [Citation(s) in RCA: 235] [Impact Index Per Article: 21.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Comparative studies of the divergence of quantitative traits and neutral molecular markers, known as Q(ST)-F(ST) comparisons, provide a means for researchers to distinguish between natural selection and genetic drift as causes of population differentiation in complex polygenic traits. The use of Q(ST)-F(ST) comparisons has increased rapidly in the last few years, highlighting the utility of this approach for addressing a wide range of questions that are relevant to evolutionary and ecological genetics. These studies have also provided lessons for the design of future Q(ST)-F(ST) comparisons. Methods based on the Q(ST)-F(ST) approach could also be used to analyse various types of 'omics' data in new and revealing ways.
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Affiliation(s)
- Tuomas Leinonen
- Ecological Genetics Research Unit, Department of Biosciences, PO Box 65, FI-00014 University of Helsinki, Finland
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