Seed-dispersal of Vouacapoua americana (Caesalpiniaceae) by caviomorph rodents in French Guiana

Advances in Legume Systematics 14. Classification of Caesalpinioideae. Part 2: Higher-level classification

Caesalpinioideae is the second largest subfamily of legumes (Leguminosae) with ca. 4680 species and 163 genera. It is an ecologically and economically important group formed of mostly woody perennials that range from large canopy emergent trees to functionally herbaceous geoxyles, lianas and shrubs, and which has a global distribution, occurring on every continent except Antarctica. Following the recent re-circumscription of 15 Caesalpinioideae genera as presented in Advances in Legume Systematics 14, Part 1, and using as a basis a phylogenomic analysis of 997 nuclear gene sequences for 420 species and all but five of the genera currently recognised in the subfamily, we present a new higher-level classification for the subfamily. The new classification of Caesalpinioideae comprises eleven tribes, all of which are either new, reinstated or re-circumscribed at this rank: Caesalpinieae Rchb. (27 genera / ca. 223 species), Campsiandreae LPWG (2 / 5-22), Cassieae Bronn (7 / 695), Ceratonieae Rchb. (4 / 6), Dimorphandreae Benth. (4 / 35), Erythrophleeae LPWG (2 /13), Gleditsieae Nakai (3 / 20), Mimoseae Bronn (100 / ca. 3510), Pterogyneae LPWG (1 / 1), Schizolobieae Nakai (8 / 42-43), Sclerolobieae Benth. & Hook. f. (5 / ca. 113). Although many of these lineages have been recognised and named in the past, either as tribes or informal generic groups, their circumscriptions have varied widely and changed over the past decades, such that all the tribes described here differ in generic membership from those previously recognised. Importantly, the approximately 3500 species and 100 genera of the former subfamily Mimosoideae are now placed in the reinstated, but newly circumscribed, tribe Mimoseae. Because of the large size and ecological importance of the tribe, we also provide a clade-based classification system for Mimoseae that includes 17 named lower-level clades. Fourteen of the 100 Mimoseae genera remain unplaced in these lower-level clades: eight are resolved in two grades and six are phylogenetically isolated monogeneric lineages. In addition to the new classification, we provide a key to genera, morphological descriptions and notes for all 163 genera, all tribes, and all named clades. The diversity of growth forms, foliage, flowers and fruits are illustrated for all genera, and for each genus we also provide a distribution map, based on quality-controlled herbarium specimen localities. A glossary for specialised terms used in legume morphology is provided. This new phylogenetically based classification of Caesalpinioideae provides a solid system for communication and a framework for downstream analyses of biogeography, trait evolution and diversification, as well as for taxonomic revision of still understudied genera.

Sowing forests: a synthesis of seed dispersal and predation by agoutis and their influence on plant communities

Granivorous rodents have been traditionally regarded as antagonistic seed predators. Agoutis (Dasyprocta spp.), however, have also been recognized as mutualistic dispersers of plants because of their role as scatter-hoarders of seeds, especially for large-seeded species. A closer look shows that such definitions are too simplistic for these Neotropical animals because agoutis can influence plant communities not only through seed dispersal of large seeds but also through predation of small seeds and seedlings, evidencing their dual role. Herein, we summarize the literature on plant-agouti interactions, decompose agouti seed dispersal into its quantitative and qualitative components, and discuss how environmental factors and plant traits determine whether these interactions result in mutualisms or antagonisms. We also look at the role of agoutis in a community context, assessing their effectiveness as substitutes for extinct megafaunal frugivores and comparing their ecological functions to those of other extant dispersers of large seeds. We also discuss how our conclusions can be extended to the single other genus in the Dasyproctidae family (Myoprocta). Finally, we examine agoutis' contribution to carbon stocks and summarize current conservation threats and efforts. We recorded 164 interactions between agoutis and plants, which were widespread across the plant phylogeny, confirming that agoutis are generalist frugivores. Seed mass was a main factor determining seed hoarding probability of plant species and agoutis were found to disperse larger seeds than other large-bodied frugivores. Agoutis positively contributed to carbon storage by preying upon seeds of plants with lower carbon biomass and by dispersing species with higher biomass. This synthesis of plant-agouti interactions shows that ecological services provided by agoutis to plant populations and communities go beyond seed dispersal and predation, and we identify still unanswered questions. We hope to emphasise the importance of agoutis in Neotropical forests.

Contribution of Vouacapoua americana fruit-fall to the release of biomass in a lowland Amazon forest

Fruit-fall provides the transfer of biomass and nutrients between forest strata and remains a poorly understood component of Amazon forest systems. Here we detail fruit-fall patterns including those of Vouacapoua americana a Critically Endangered timber species across 25 km² of lowland Amazon forest in 2016. We use multi-model comparisons and an ensemble model to explain and interpolate fruit-fall data collected in 90 plots (totaling 4.42 ha). By comparing patterns in relation to observed and remotely sensed biomass estimates we establish the seasonal contribution of V. americana fruit-fall biomass. Overall fruit-fall biomass was 44.84 kg ha⁻¹ month⁻¹ from an average of 44.55 species per hectare, with V. americana dominating both the number and biomass of fallen fruits (43% and 64%, number and biomass respectively). Spatially explicit interpolations provided an estimate of 114 Mg dry biomass of V. americana fruit-fall across the 25 km² area. This quantity represents the rapid transfer by a single species of between 0.01 and 0.02% of the overall above ground standing biomass in the area. These findings support calls for a more detailed understanding of the contribution of individual species to carbon and nutrient flows in tropical forest systems needed to evaluate the impacts of population declines predicted from short (< 65 year) logging cycles.

Seed nutrient content rather than size influences seed dispersal by scatterhoarding rodents in a West African montane forest

Rodents can be important in seed dispersal through their scatterhoarding behaviour, yet, the seed traits that are most influential in seed removal by Afrotropical scatterhoarding rodents remains unclear. Here, we investigated the effect of seed size and nutrient content of four seed species on the scatterhoarding behaviour of rodents in an Afromontane forest, Ngel Nyaki forest, Nigeria. To do this we marked with thread-tags the seeds of Santiria trimera, Beilschmedia mannii, Carapa oreophila and Anthonotha noldeae and observed their fate. We predicted that (1) caching frequency would be higher for larger than smaller seed species; (2) caching frequency would be higher for nutrient-rich than nutrient-poor seeds; (3) larger seeds would be taken across farther distances; and (4) survival of cached seeds would be higher for nutrient-rich seeds. In contrast to studies elsewhere we found no difference in caching probabilities based on seed size, although nutrient-rich (high fat content) seeds had a higher probability of being predated than seeds with lower fat content. Larger and smaller seeds were dispersed over the same distances and nutrient-poor (high fibre content) seeds survived longer in seed caches. Overall, our findings suggest that large, nutrient-rich seed species are less likely to be dispersed by rodents.

Potential impact of mammal defaunation on the early regeneration of a large-seeded palm in the Brazilian Atlantic Forest

Defaunation, the decline in animal species and populations, is biased towards large-bodied animals that have unique roles as dispersers of large seeds. However, it is speculated that these roles may still be performed by smaller animals, such as small mammals like rodents and marsupials, that thrive in defaunated sites. We investigated if small mammals can disperse the large-seeded palm Attalea dubia. We performed the study in a well-conserved Atlantic Forest remnant in southeast Brazil that still harbours large mammals, such as tapirs. Focal observations showed that capuchin-monkeys consumed the mesocarp of the fruits and dropped the seeds beneath the plant crown thereafter. Mammals preyed on ca. 1% and removed ca. 15% of the fallen fruit/seed and deposited them up to 15 m away. Amongst them, small mammals (&lt; 1 kg), such as the squirrel Guerlinguetus brasiliensis and non-identified nocturnal Sigmodontinae, as well as the marsupial Philander frenatus performed the bulk of interactions. Dispersal enhances recruitment, but the short distances of seed removal did not match the current spatial distribution of palm seedlings and juveniles. Recaching rates of hoarded seeds were small (2%) and unlikely to increase distances of seed dispersal achieved. Short distances of dispersal would increase plant clumpiness and negative density-dependent effects with time. Although small mammals can provide legitimate dispersal, they cannot fully replace larger frugivorous mammals and maintain long-distance seed dispersal that feeds plant metapopulation dynamics and seed gene flow.

Seed size evolution and biogeography of Plukenetia (Euphorbiaceae), a pantropical genus with traditionally cultivated oilseed species

BACKGROUND

Plukenetia is a small pantropical genus of lianas and vines with variably sized edible oil-rich seeds that presents an ideal system to investigate neotropical and pantropical diversification patterns and seed size evolution. We assessed the biogeography and seed evolution of Plukenetia through phylogenetic analyses of a 5069 character molecular dataset comprising five nuclear and two plastid markers for 86 terminals in subtribe Plukenetiinae (representing 20 of ~ 23 Plukenetia species). Two nuclear genes, KEA1 and TEB, were used for phylogenetic reconstruction for the first time. Our goals were: (1) produce a robust, time-dependent evolutionary framework for Plukenetia using BEAST; (2) reconstruct its biogeographical history with ancestral range estimation in BIOGEOBEARS; (3) define seed size categories; (4) identify patterns of seed size evolution using ancestral state estimation; and (5) conduct regression analyses with putative drivers of seed size using the threshold model.

RESULTS

Plukenetia was resolved into two major groups, which we refer to as the pinnately- and palmately-veined clades. Our analyses suggest Plukenetia originated in the Amazon or Atlantic Forest of Brazil during the Oligocene (28.7 Mya) and migrated/dispersed between those regions and Central America/Mexico throughout the Miocene. Trans-oceanic dispersals explain the pantropical distribution of Plukenetia, including from the Amazon to Africa in the Early Miocene (17.4 Mya), followed by Africa to Madagascar and Africa to Southeast Asia in the Late Miocene (9.4 Mya) and Pliocene (4.5 Mya), respectively. We infer a single origin of large seeds in the ancestor of Plukenetia. Seed size fits a Brownian motion model of trait evolution and is moderately to strongly associated with plant size, fruit type/dispersal syndrome, and seedling ecology. Biome shifts were not drivers of seed size, although there was a weak association with a transition to fire prone semi-arid savannas.

CONCLUSIONS

The major relationships among the species of Plukenetia are now well-resolved. Our biogeographical analyses support growing evidence that many pantropical distributions developed by periodic trans-oceanic dispersals throughout the Miocene and Pliocene. Selection on a combination of traits contributed to seed size variation, while movement between forest edge/light gap and canopy niches likely contributed to the seed size extremes in Plukenetia.

Seed fate and seedling recruitment in monkey latrines in rustic cocoa plantations and rain forest in southern Mexico

Primates are important seed dispersers in natural ecosystems and agro-ecosystems, but the latter scenario remains under-studied. The degree to which primates favour plant regeneration greatly depends on post-dispersal processes. The main objective of this study was to compare patterns of seed/seedling fate and seedling recruitment in two habitats of the black howler monkey (Alouatta pigra Lawrence 1933), rustic cocoa and rain forest, and two types of seed-deposition locations, monkey latrines and control locations. Field experiments were carried out within the non-overlapping home ranges of six monkey groups, three in cocoa and three in forest. Seed and seedling fates were assessed for one focal tree species, Brosimum lactescens. The probabilities of seed survival (0.52), germination (0.72), seedling establishment (0.73) and early seedling survival (0.38) were not affected by habitat or seed-deposition location. Late seedling survival was similar in the two habitats but was higher in control locations (0.22) than in latrines (0.09). In cocoa, 4641 seedlings of 59 species were recorded, in forest 3280 seedlings of 68 species. Seedling recruitment was similar in both habitats, but latrines had higher densities than control locations. The importance of agro-ecosystems with low management intensity for the maintenance of ecological processes in anthropogenic landscapes is discussed.

Does scatter-hoarding of seeds benefit cache owners or pilferers?

The scatter‐hoarding behavior of granivorous rodents plays an important role in seed dispersal and seedling regeneration of trees, as well as the evolution of several well‐known mutualisms between trees and rodents in forest ecosystems. Because it is difficult to identify seed hoarders and pilferers under field conditions by traditional methods, the full costs incurred and benefits accrued by scatter‐hoarding have not been fully evaluated in most systems. By using infrared radiation camera tracking and seed tagging, we investigated the benefits and losses of scatter‐hoarded seeds (Camellia oleifera) for 3 sympatric rodent species (Apodemus draco, Niviventer confucianus and Leopoldamys edwardsi) in a subtropical forest of Southwest China during 2013 to 2015. We established the relationships between the rodents and the seeds at the individual level. For each rodent species, we calculated the cache recovery rate of cache owners, as well as conspecific and interspecific pilferage rates. We found that all 3 sympatric rodent species had a cache recovery advantage with rates that far exceeded average pilferage rates over a 30‐day tracking period. The smallest species (A. draco) showed the highest rate of scatter‐hoarding and the highest recovery advantage compared with the other 2 larger species (N. confucianus and L. edwardsi). Our results suggest that scatter‐hoarding benefits cache owners in food competition, supporting the pilferage avoidance hypothesis. Therefore, scatter‐hoarding behavior should be favored by natural selection, and plays a significant role in species coexistence of rodent community and in the formation of mutualism between seeds and rodents in forest ecosystems.

Altitudinal gradients, biogeographic history and microhabitat adaptation affect fine-scale spatial genetic structure in African and Neotropical populations of an ancient tropical tree species

The analysis of fine-scale spatial genetic structure (FSGS) within populations can provide insights into eco-evolutionary processes. Restricted dispersal and locally occurring genetic drift are the primary causes for FSGS at equilibrium, as described in the isolation by distance (IBD) model. Beyond IBD expectations, spatial, environmental or historical factors can affect FSGS. We examined FSGS in seven African and Neotropical populations of the late-successional rain forest tree Symphonia globulifera L. f. (Clusiaceae) to discriminate the influence of drift-dispersal vs. landscape/ecological features and historical processes on FSGS. We used spatial principal component analysis and Bayesian clustering to assess spatial genetic heterogeneity at SSRs and examined its association with plastid DNA and habitat features. African populations (from Cameroon and São Tomé) displayed a stronger FSGS than Neotropical populations at both marker types (mean Sp = 0.025 vs. Sp = 0.008 at SSRs) and had a stronger spatial genetic heterogeneity. All three African populations occurred in pronounced altitudinal gradients, possibly restricting animal-mediated seed dispersal. Cyto-nuclear disequilibria in Cameroonian populations also suggested a legacy of biogeographic history to explain these genetic patterns. Conversely, Neotropical populations exhibited a weaker FSGS, which may reflect more efficient wide-ranging seed dispersal by Neotropical bats and other dispersers. The population from French Guiana displayed an association of plastid haplotypes with two morphotypes characterized by differential habitat preferences. Our results highlight the importance of the microenvironment for eco-evolutionary processes within persistent tropical tree populations.

Post-dispersal seed removal by rodents in Ranomafana rain forest, Madagascar

Seed-consuming rodents are increasingly recognized for their roles in the maintenance of tree species diversity, by acting on crucial post seed-dispersal processes. Yet, studies examining the extent to which rodents may act as secondary seed dispersers and/or predators in Madagascar's forests are limited. Thread-marking seed experiments were run to address this, using the seeds of two native large-seeded, frugivore-dispersed tree species (Abrahamia thouvenotii and Cryptocarya crassifolia), in disturbed and less-disturbed habitats in the rain forests of Ranomafana National Park, during the dry season. Data show that post-dispersal handling of seeds by rodents (predation and removal) was significantly lower in disturbed than in less-disturbed habitats (1.31–3.78 times lower; n = 2200). Also, seeds were more likely to be predated or left on the forest ground after removal than being larder- or scatter-hoarded: 27–78% of the removed seeds were found on the ground, <12% found in burrows and there was no evidence of scatter-hoarding (n = 132). Based on pictures from camera traps, the native rodent species, Nesomys rufus, was potentially responsible for seed predation and/or removal in the less-disturbed habitat; but no indication of the rodent species active in the disturbed habitat was obtained. The lack of scatter-hoarding suggests a limited role of rodents in secondary seed dispersal in this system. These findings form a preliminary account of the potential roles of rodents in post seed-dispersal processes in Madagascar's forests, but this warrants further study.

Walking on their own legs: unassisted population growth of the agouti Dasyprocta leporina, reintroduced to restore seed dispersal in an Atlantic Forest reserve

Reintroduction of locally extirpated species is an increasingly popular conservation tool. However, few initiatives focus on the restoration of ecological processes. In addition, many reintroductions fail to conduct post-release monitoring, hampering both assessment of their success and implementation of adaptive management actions. In 2009 a reintroduction effort was initiated to re-establish a population of the red-rumped agouti Dasyprocta leporina, a scatter-hoarding rodent known to be an important disperser of large seeds, with the aim of restoring ecological processes at Tijuca National Park, south-east Brazil. To assess whether this reintroduced population established successfully we monitored it using mark–resighting during November 2013–March 2015. Population size and survival were estimated using a robust design Poisson-log normal mixed-effects mark–resight model. By March 2015 the number of wild-born individuals fluctuated around 30 and overall growth of the population was positive. As the reintroduced population is capable of unassisted growth, we conclude that the reintroduction has been successful in the medium term. We recommend the cessation of releases, with efforts redirected to continued monitoring, investigation and management of possible threats to the species’ persistence, and to quantification of the re-establishment of ecological processes. Reintroduction of D. leporina populations can be a cost-effective tool to restore ecological processes, especially seed dispersal, in Neotropical forests.

Primary seed dispersal by a sigmodontine rodent assemblage in a Peruvian montane forest

We examined quantity and quality components of primary seed dispersal for an assemblage of sigmodontine rodents in a high-elevation montane tropical forest in Peru. We collected faecal samples from 134 individuals belonging to seven rodent species from the subfamily Sigmodontinae (Cricetidae) over a 2-y period. We conducted seed viability tests for seeds found in faecal samples. We identified seeds from eight plant families (Bromeliaceae, Annonaceae, Brassicaceae, Ericaceae, Melastomatacae, Myrtaceae, Rosaceae, Solanaceae), nine genera and 13 morphospecies. The most abundant seeds belonged toGaultheriasp. 1 (46% of total) andMiconiasp. 1 (31% of total), while the most viable seeds belonged toGreigiasp. (84% viability) andGuatteriasp. (80% viability). We utilized relative rodent abundance, seed species diversity, seed abundance and seed viability per rodent species to calculate an index of rodent disperser effectiveness, and found thatThomasomys kalinowskiiwas the most effective disperser, followed byAkodon torques,Calomys sorellus,Thomasomys oreas,Oligoryzomys andinusandMicroryzomys minutus. Plant genera dispersed by sigmodontine rodents overlapped more with bird- and terrestrial-mammal-dispersed plants than with bat-dispersed plants. Future neotropical seed dispersal studies should consider small rodents as potential seed-dispersers, especially in tropical habitats where small-seeded, berry-forming shrubs and trees are present.

Diet of a sigmodontine rodent assemblage in a Peruvian montane forest

Knowledge of feeding habits of small rodents is necessary for understanding food webs, trophic structure, and plant-animal interactions in Neotropical forests. Despite several studies that have investigated community structure and feeding behavior of rodents, large gaps remain in our understanding of their guild occupancy. Our objective was to investigate the diets of 7 species of small (< 100g) sympatric sigmodontine rodents in a high (3,500 m) Andean montane rainforest in Peru. We qualitatively and quantitatively assessed diet items in fecal samples from livetrapped rodents from 2009 to 2012. Frequency data for 4 diet categories indicated that all 7 species of rodents contained 4 diet categories in fecal samples: arthropods (88%), remains of leaves and fibers from plants (61%), intact seeds (with or without fruit pulp; 50%), and mycorrhizal spores (45%). Omnivory was found to be a strategy used by all species, although contingency table analysis revealed significant differences among and within species in diet categories. Cluster analysis showed 2 main groupings: that of the Thomasomys spp. plus Calomys sorellus group which included high amounts of intact seeds and plant parts in their fecal samples, and those of the genera Akodon, Microryzomys, Oligoryzomys, which included a greater proportion of arthropods in their fecal samples, but still consumed substantial amounts of fruit and plant parts. Intact seed remains from at least 17 plant species (9 families) were found in fecal samples. We concluded that this assemblage of sigmodontine rodents is omnivorous but that they likely play an important role as frugivores and in seed dispersal in tropical montane forests in Peru. El conocimiento de los hábitos alimenticios de roedores pequeños es necesario para comprender cadenas alimenticias, estructura trófica, e interacciones planta-animal en los bosques neotropicales. A pesar de que numerosos estudios han investigado la estructura de comunidades y el comportamiento de forrajeo en roedores, aún existen grandes vacíos en nuestra comprensión de sus gremios tróficos. Nuestro objetivo fue investigar las dietas de siete especies de pequeños (< 100 g) roedores sigmodontinos simpátricos en un bosque montano andino a 3.500] m en Perú. Cualitativamente y cuantitativamente evaluamos la dieta en muestras fecales de roedores capturados entre el 2009 y el 2012. Datos de frecuencia para cuatro categorías de dieta indicaron que las siete especies de roedores consumieron cuatro categorías de dieta: artrópodos (88%), pedazos de hojas y fibras de plantas (61%), semillas intactas (con o sin pulpa de frutos; 50%), y esporas de micorrizas (45%). Omnivoría fue la estrategia utilizada por todas las especies, aunque el análisis con tablas de contingencia reveló diferencias significativas entre y dentro de especies en categorías de dieta. El análisis de agrupación presentó 2 grupos principales: el grupo Thomasomys spp. y Calomys sorellus, que incluye una gran proporción de semillas intactas, y partes de plantas en las muestras fecales y el grupo que incluye los géneros Akodon, Microryzomys y Oligoryzomys, el cual incluyó una proporción mayor de artrópodos en sus muestras fecales, pero con niveles altos de semillas intactas. Semillas intactas de al menos 17 especies de plantas (9 familias) fueron encontradas en las muestras fecales. Concluimos que este ensamble de roedores sigmodontinos es omnívoro y que probablemente las especies juegan un rol importante como frugívoros y en la dispersión de semillas en los bosques montanos tropicales en el Perú.

Tracking Seed Fates of Tropical Tree Species: Evidence for Seed Caching in a Tropical Forest in North-East India

Rodents affect the post-dispersal fate of seeds by acting either as on-site seed predators or as secondary dispersers when they scatter-hoard seeds. The tropical forests of north-east India harbour a high diversity of little-studied terrestrial murid and hystricid rodents. We examined the role played by these rodents in determining the seed fates of tropical evergreen tree species in a forest site in north-east India. We selected ten tree species (3 mammal-dispersed and 7 bird-dispersed) that varied in seed size and followed the fates of 10,777 tagged seeds. We used camera traps to determine the identity of rodent visitors, visitation rates and their seed-handling behavior. Seeds of all tree species were handled by at least one rodent taxon. Overall rates of seed removal (44.5%) were much higher than direct on-site seed predation (9.9%), but seed-handling behavior differed between the terrestrial rodent groups: two species of murid rodents removed and cached seeds, and two species of porcupines were on-site seed predators. In addition, a true cricket, Brachytrupes sp., cached seeds of three species underground. We found 309 caches formed by the rodents and the cricket; most were single-seeded (79%) and seeds were moved up to 19 m. Over 40% of seeds were re-cached from primary cache locations, while about 12% germinated in the primary caches. Seed removal rates varied widely amongst tree species, from 3% in Beilschmiedia assamica to 97% in Actinodaphne obovata. Seed predation was observed in nine species. Chisocheton cumingianus (57%) and Prunus ceylanica (25%) had moderate levels of seed predation while the remaining species had less than 10% seed predation. We hypothesized that seed traits that provide information on resource quantity would influence rodent choice of a seed, while traits that determine resource accessibility would influence whether seeds are removed or eaten. Removal rates significantly decreased (p < 0.001) while predation rates increased (p = 0.06) with seed size. Removal rates were significantly lower for soft seeds (p = 0.002), whereas predation rates were significantly higher on soft seeds (p = 0.01). Our results show that murid rodents play a very important role in affecting the seed fates of tropical trees in the Eastern Himalayas. We also found that the different rodent groups differed in their seed handling behavior and responses to changes in seed characteristics.

Seed predation in a human-modified tropical landscape

Contemporary defaunation of fragmented forests potentially alters patterns of seed predation and dispersal. Alternatively, the remaining fauna may compensate for missing animals, resulting in equivalent rates of seed dispersal and predation. In the Los Tuxtlas region of southern Mexico, populations of large terrestrial fruit-eating mammals are diminished or absent from many forest remnants. This study reports fruit removal and seed predation patterns of Poulsenia armata (Moraceae), in forest fragments and a continuous forest (LTBS). Contrary to expectation, we found no differences in seed predation (mean ± SD) between LTBS (7.2 ± 1.8 seeds per station) and forest fragments (5.6 ± 1.1). However more fruits were removed in the LTBS (11.4 ± 0.9 fruits per station) than in forest fragments (8.1 ± 0.8). Animal activity, recorded by camera traps, differed between animal guild with fewer seed dispersers in forest fragments (mean = 0.43 ± 0.02 photos wk−1) than in the LTBS (mean = 0.68 ± 0.05). Fruits and seeds attracted many species of mammal (n = 12) in both habitats, indicating substantial redundancy. Remnant forest patches in the Los Tuxtlas landscape retain great ecological value, both as refuges for mammals and habitats for trees, such as P. armata.

Integrating frugivory and animal movement: a review of the evidence and implications for scaling seed dispersal

General principles about the consequences of seed dispersal by animals for the structure and dynamics of plant populations and communities remain elusive. This is in part because seed deposition patterns emerge from interactions between frugivore behaviour and the distribution of food resources, both of which can vary over space and time. Here we advocate a frugivore-centred, process-based, synthetic approach to seed dispersal research that integrates seed dispersal ecology and animal movement across multiple spatio-temporal scales. To guide this synthesis, we survey existing literature using paradigms from seed dispersal and animal movement. Specifically, studies are discussed with respect to five criteria: selection of focal organisms (animal or plant); measurement of animal movement; characterization of seed shadow; animal, plant and environmental factors included in the study; and scales of the study. Most studies focused on either frugivores or plants and characterized seed shadows directly by combining gut retention time with animal movement data or indirectly by conducting maternity analysis of seeds. Although organismal traits and environmental factors were often measured, they were seldom used to characterize seed shadows. Multi-scale analyses were rare, with seed shadows mostly characterized at fine spatial scales, over single fruiting seasons, and for individual dispersers. Novel animal- and seed-tracking technologies, remote environmental monitoring tools, and advances in analytical methods can enable effective implementation of a hierarchical mechanistic approach to the study of seed dispersal. This kind of mechanistic approach will provide novel insights regarding the complex interplay between the factors that modulate animal behaviour and subsequently influence seed dispersal patterns across spatial and temporal scales.

Dispersal and predation of Eschweilera ovata seeds in the Atlantic Forest of Southern Bahia, Brazil

A majority of Neotropical rain-forest trees have fruits evolved for animal consumption suggesting that seed-dispersal mutualisms are fundamental interactions structuring these ecosystems (Howe 1986, Howe & Smallwood 1982, van Roosmalen 1985). However, whether frugivores act as seed dispersers or predators of particular plant species is unknown for most tropical trees. Trees of the family Lecythidaceae are widespread in Neotropical rain forests forming an important component of the plant community (Aparecida Lopes 2007, Mori 1990, Mori et al. 2001, Sabatier & Prevost 1990), yet studies of plant–animal interactions are few (Jorge & Peres 2005, Silvius & Fragoso 2003, Trivedi et al. 2004). Results suggest that Lecythidaceae trees with zoochoric fruits are principally dispersed by bats, birds, rodents and primates (Prance & Mori 1983), although we know little about animal interactions with Eschweilera seeds.

Consequences of frugivore-mediated seed dispersal for the spatial and genetic structures of a neotropical palm

The idiosyncratic behaviours of seed dispersers are important contributors to plant spatial associations and genetic structures. In this study, we used a combination of field, molecular and spatial studies to examine the connections between seed dispersal and the spatial and genetic structures of a dominant neotropical palm Attalea phalerata. Field observation and genetic parentage analysis both indicated that the majority of A. phalerata seeds were dispersed locally over short distances (<30 m from the maternal tree). Spatial and genetic structures between adults and seedlings were consistent with localized and short-distance seed dispersal. Dispersal contributed to spatial associations among maternal sibling seedlings and strong spatial and genetic structures in both seedlings dispersed near (<10 m) and away (>10 m) from maternal palms. Seedlings were also spatially aggregated with juveniles. These patterns are probably associated with the dispersal of seeds by rodents and the survival of recruits at specific microsites or neighbourhoods over successive fruiting periods. Our cross-cohort analyses found palms in older cohorts and cohort pairs were associated with a lower proportion of offspring and sibling neighbours and exhibited weaker spatial and genetic structures. Such patterns are consistent with increased distance- and density-dependent mortality over time among palms dispersed near maternal palms or siblings. The integrative approaches used for this study allowed us to infer the importance of seed dispersal activities in maintaining the aggregated distribution and significant genetic structures among A. phalerata palms. We further conclude that distance- and density-dependent mortality is a key postdispersal process regulating this palm population.

Genetic and clonal diversity of the endemic ant-plant Humboldtia brunonis (Fabaceae) in the Western Ghats of India

Humboldtia brunonis (Fabaceae, Caesalpinioideae) is a dominant self-incompatible ant-plant or myrmecophyte, growing as an understorey tree in high-density patches. It is endemic to the biodiversity hotspot of the southern Western Ghats of India and, besides ants, harbours many endemic invertebrate taxa, such as bees that pollinate it as well as arboreal earthworms, within swollen hollow stem internodes called domatia. Using inter simple sequence repeat (ISSR) markers, three geographically separated populations were found to be multiclonal, characterized by high levels of clonal diversity. Values for the Simpson diversity index ranged between 0.764 and 0.964, and for Fager's evenness index between 0.00 and 0.036 for neighbourhoods within populations. This myrmecophyte was found to combine sexual recruitment (66.7%) and clonal production (33.3%) as methods of reproduction. Moderate amounts of genetic diversity at the species level were observed, with 52.63% polymorphism, and moderate values of Shannon's diversity index (0.1895) as well as of Nei's gene diversity (0.1186). In each population, observed genotypic diversity was significantly lower than expected, indicating significant genetic structure. Neighbour-joining trees demonstrated that Agumbe, which is the most northern population examined and geographically twice as far away from the other two populations, grouped separately and with larger bootstrap support from a larger cluster consisting of the Sampaji and Solaikolli populations, which are closer to each other geographically. Some neighbourhoods within each population showed spatial genetic structure even at small spatial scales of less than 5 m. A combination of clonality and short-distance pollen movement by small pollinating bees (Braunsapis puangensis) coupled with primary ballistic seed dispersal, and possible secondary seed dispersal by rodents, may contribute to spatial genetic structure at such small scales. The clonality of H. brunonis may be a factor that contributes to its dominance in Western Ghat forests where it supports a rich diversity of invertebrate fauna.

Seed dispersal of the Brazil nut tree (Bertholletia excelsa) by scatter-hoarding rodents in a central Amazonian forest

We know surprisingly little about the fate of seeds of the Brazil nut tree (Bertholletia excelsa) under natural conditions. Here we investigate seed removal, predation and caching of Brazil nuts by scatter-hoarding rodents in the wet and dry seasons, based on an experimental approach using 900 thread-marked seeds. We tracked the fate of seeds handled by these animals to examine how seasonal food availability may influence caching rates, dispersal distances and cache longevity. Most seeds exposed to dispersal trials were removed by scatter-hoarders during the first week in both seasons and seeds were generally buried intact in single-seeded caches within 10 m of seed stations. Seeds were removed significantly faster and buried at greater distances during the dry season. The proportion of seeds buried intact was considerably higher in the wet season (74.4%) than in the dry season (38.2%). Most (99.4%) of the 881 primary caches monitored were recovered, but these had a significantly shorter lifetime in the dry season. Our results show that rodents are highly skilled at retrieving buried Brazil nuts and that caching behaviour appears to be affected by seasonal resource abundance. Reduced seed availability due to intensive harvest could potentially create a dry-season scenario where most seeds succumb to pre-dispersal predation, thereby adversely affecting the natural regeneration of Brazil nut trees.

Spatial patterns of tree recruitment in East African tropical forests that have lost their vertebrate seed dispersers

The direct removal of adult trees by logging affects tree recruitment in tropical rain forests. However, secondary effects of logging, such as loss of vertebrate seed dispersers may also affect tree recruitment. We studied the recruitment and spatial distribution of five tree species namely Balanites wilsoniana, Celtis zenkeri, Chrysophyllum albidum, Cordia millenii and Ricinodendron heudelotii in Kibale, Budongo and Mabira Forests in Uganda. These forests have been subjected to varying degrees of disturbance leading to changes in their vertebrate seed dispersers. Vertebrate frugivores of the five tree species were identified. Three 1-ha plots were established around adult trees of the same five species in each forest and the distance from the juveniles to the nearest adult conspecific was measured to generate a recruitment curve. Frugivore visitation rates were high in the less disturbed Budongo and Kibale (2.2 and 1.6 individuals h−1 respectively) compared with the highly disturbed Mabira (0.9 individuals h−1). In the frugivore-impoverished forest, 70–90% of juveniles established beneath adult conspecifics, whereas in the less-disturbed forests juveniles were established up to 80 m from adult conspecifics. Shade-tolerant species capable of recruiting beneath adult conspecifics appeared to maintain their populations without dispersal. Consequently, disturbances leading to significant loss of vertebrates may alter tree recruitment and spatial distribution with consequences for long-term population viability of shade-intolerant tropical trees.

Effect of rodents on seed fate of five hornbill-dispersed tree species in a tropical forest in north-east India

Hornbills are important dispersers of a wide range of tree species. Many of these species bear fruits with large, lipid-rich seeds that could attract terrestrial rodents. Rodents have multiple effects on seed fates, many of which remain poorly understood in the Palaeotropics. The role of terrestrial rodents was investigated by tracking seed fate of five hornbill-dispersed tree species in a tropical forest in north-east India. Seeds were marked inside and outside of exclosures below 6–12 parent fruiting trees (undispersed seed rain) and six hornbill nest trees (a post-dispersal site). Rodent visitors and seed removal were monitored using camera traps. Our findings suggest that several rodent species, especially two species of porcupine were major on-site seed predators. Scatter-hoarding was rare (1.4%). Seeds at hornbill nest trees had lower survival compared with parent fruiting trees, indicating that clumped dispersal by hornbills may not necessarily improve seed survival. Seed survival in the presence and absence of rodents varied with tree species. Some species (e.g. Polyalthia simiarum) showed no difference, others (e.g. Dysoxylum binectariferum) experienced up to a 64% decrease in survival in the presence of rodents. The differing magnitude of seed predation by rodents can have significant consequences at the seed establishment stage.

Seed predation by rodents and safe sites for large-seeded trees in a fragment of the Brazilian Atlantic forest

Seed predation by small rodents is an emerging theme in the ecology of modified landscapes. Here we investigate the role played by the small rodent Oryzomys oniscus as a seed predator of large-seeded trees in a large remnant of the Atlantic forest - the Coimbra forest (3,500 ha), Alagoas state, northeastern Brazil. O. oniscus was captured and identified by setting twenty 500 m long transects, each one composed of 25 traps 20 m apart. This procedure resulted in 483 trap-nights set during a 20-mo period. We used 692 seeds (>15 mm length) from ten local large-seeded tree species for the seed predation trials that basically consisted of three treatments: one seed on the ground freely accessed by vertebrates (unprotected seed), one seed totally protected by an exclosure, and one partially-protected seed (exclosure just for medium-sized and large vertebrates). O. oniscus was captured throughout the Coimbra forest including forest edges (76 captures) and interior areas (67), and this small rodent was responsible for all seed predation visually documented inside exclosures. A 24 hours period of seed exposition permitted elevated rates of seed removal and predation. Seeds were much more removed/predated beneath fruiting trees, but rates varied according to the level of seed protection - 26.3% of predation among partially-protected versus 19.2% among unprotected seeds. Seeds suffered higher levels of seed predation/removal at the forest edge as well (up to 90%). In both habitats, most seeds (>84%) remained intact beneath trees without fruits, regardless of the level of seed protection. Our results suggest that O. oniscus may operate as an effective large-seed predator in forest fragments, in which adult trees without fruits constitute low resource spots and thereby provide, at least temporarily, safe sites for large seeds.

Tropical tree seedling dynamics: recruitment patterns and their population consequences for three canopy species in Panama

A study of seedling demography of three shade-tolerant canopy tree species (Quararibea asterolepis, Trichilia tuberculata, and Tetragastris panamensis) was initiated to integrate with long-term studies of tree fruit production and of tree population dynamics on Barro Colorado Island, Panama. Over a five-year period, all seedlings (height <50 cm) and small saplings (height ≥50 cm to dbh 1 cm) were measured and monitored in permanent tree-centred transects (N = 10–11 trees per species). Survival rates increased with plant size class and were similar among species. Maximum height growth rates increased with increasing plant size, but average growth rates did not; this disparity suggests the importance of release from understorey suppression for long-term recruitment success. Among the three species, Quararibea had the lowest standing seedling densities and almost no sapling recruitment, whereas Tetragastris had the highest densities of both seedlings and saplings; Trichilia seedling and sapling densities were intermediate. In all three species, a few trees produced very high seedling and sapling densities in comparison with the sample average. All three species exhibited a year of exceptionally high new seedling recruitment during the study period; these good years were not coincident among the species but instead reflected the species' phenological differences. Since seedling survival becomes relatively constant and high after the first few years of life (c. 80% y−1), such large new cohorts persist as a year-class effect in the seedling population and thus maintain seedling numbers over time. The interspecific differences in seedling and sapling dynamics were consistent with overall 10-year trends of a declining Quararibea population, a stable Trichilia population, and an increasing Tetragastris population.