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Spedalieri C, Plaickner J, Speiser E, Esser N, Kneipp J. Ultraviolet Resonance Raman Spectra of Serum Albumins. APPLIED SPECTROSCOPY 2023; 77:1044-1052. [PMID: 37415516 PMCID: PMC10478327 DOI: 10.1177/00037028231183728] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Accepted: 05/31/2023] [Indexed: 07/08/2023]
Abstract
The ultraviolet resonance Raman (UVRR) spectra of the two proteins bovine serum albumin (BSA) and human serum albumin (HSA) in an aqueous solution are compared with the aim to distinguish between them based on their very similar amino acid composition and structure and to obtain signals from tryptophan that has only very few residues. Comparison of the protein spectra with solutions of tryptophan, tyrosine, and phenylalanine in comparative ratios as in the two proteins shows that at an excitation wavelength of 220 nm, the spectra are dominated by the strong resonant contribution from these three amino acids. While the strong enhancement of two and one single tryptophan residue in BSA and HSA, respectively, results in pronounced bands assigned to fundamental vibrations of tryptophan, its weaker overtones and combination bands do not play a major role in the spectral range above 1800 cm-1. There, the protein spectra clearly reveal the signals of overtones and combination bands of phenylalanine and tyrosine. Assignments of spectral features in the range of Raman shifts from 3800 to 5100 cm-1 to combinations comprising fundamentals and overtones of tyrosine were supported by spectra of amino acid mixtures that contain deuterated tyrosine. The information in the high-frequency region of the UVRR spectra could provide information that is complementary to near-infrared absorption spectroscopy of the proteins.
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Affiliation(s)
- Cecilia Spedalieri
- Department of Chemistry, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Julian Plaickner
- Technische Universität Berlin, Institut für Festkörperphysik, Berlin, Germany
| | | | - Norbert Esser
- Technische Universität Berlin, Institut für Festkörperphysik, Berlin, Germany
- Leibniz-Institut für Analytische Wissenschaften-ISASe.V, Berlin, Germany
| | - Janina Kneipp
- Department of Chemistry, Humboldt-Universität zu Berlin, Berlin, Germany
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Yu CN, Hiramatsu H. Resonance Hyper-Raman Spectroscopy of Nucleotides and Polynucleotides. J Phys Chem B 2022; 126:9309-9315. [PMID: 36326439 DOI: 10.1021/acs.jpcb.2c05673] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
We applied 532 nm-excited two-photon resonance hyper-Raman (RHR) spectroscopy to nucleotides (dA, dG, dT, and dC) to obtain fundamental knowledge about their spectral patterns. The RHR spectrum of each nucleotide exhibited various modes of the purine and pyrimidine rings, showing the ability to acquire the structural information on the chromophore. The band positions of the RHR spectrum and the 266 nm-excited one-photon UV-resonance Raman (UVRR) spectrum were identical, while the intensity patterns differed. The peak assignments of the RHR bands were given by analogy to the UVRR spectrum. In examining the polynucleotides, which form a double-stranded helix through intermolecular hydrogen bonds, some RHR bands were found to be available as structural markers. Moreover, several overtone and combination bands were detected above 2000 cm-1. The frequencies of dA and dG were accounted for by considering the involvement of the vibration of dA at 1579 cm-1 and that of dG at 1482 cm-1, respectively. Multiple vibronically active modes were seen for dT and dC. HR spectroscopy offers unique information on the fundamental, combination, and overtone modes of dA and dG, of which the multiple electronic states are involved in the resonance process.
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Ashtari-Jafari S, Jamshidi Z, Visscher L. Efficient simulation of resonance Raman spectra with tight-binding approximations to Density Functional Theory. J Chem Phys 2022; 157:084104. [DOI: 10.1063/5.0107220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Resonance Raman spectroscopy has long been established as one of the most sensitive techniques for detection, structure characterization and probing the excited-state dynamics of biochemical systems. However, the analysis of resonance Raman spectra is much facilitated when measurements are accompanied by Density Functional Theory (DFT) calculations which are expensive for large biomolecules. In this work, resonance Raman spectra are therefore computed with the Density Functional Tight-Binding (DFTB) method in the time-dependent excited-state gradient approximation. To test the accuracy of the tight-binding approximations, this method is first applied to typical resonance Raman benchmark molecules like β-carotene and compared to results obtained with pure and range-separated exchange-correlation (xc) functionals. We then demonstrate the efficiency of the approach by considering a computationally challenging heme variation. Overall, we find that the vibrational frequencies and excited-state properties (energies and gradients) which are needed to simulate the spectra are reasonably accurate and suitable for interpretation of experiments. We can therefore recommend DFTB as a fast computational method to interpret resonance Raman spectra.
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Affiliation(s)
- Sahar Ashtari-Jafari
- Chemistry & Chemical Engineering Research Center of Iran (CCERCI), Iran, Islamic Republic of
| | - Zahra Jamshidi
- Chemistry, Sharif University of Technology, Iran, Islamic Republic of
| | - Lucas Visscher
- Division of Theoretical Chemistry, Vrije Universiteit Amsterdam, Netherlands
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Milana P, Suendo V, Pebriani T, Steky FV, Benu DP, Nurhayati, Radiman CL. Surface amplification of tetraphenylporphyrin overtone and combination Raman bands in drop coating deposition Raman (DCDR) on electrically conductive surfaces. Phys Chem Chem Phys 2021; 23:18830-18842. [PMID: 34612421 DOI: 10.1039/d1cp01911b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
It is essential to realize a Raman measurement technique without artifact or fluorescence signals for high-quality and reliable data in a valid molecular-level analysis and interpretation. This requirement applies especially to a molecule with strong fluorescence like porphyrin. Here, the surface of a gold substrate performs better as a DCDR substrate for tetraphenylporphyrin than other surfaces, such as tantalum, indium tin oxide glass, or aluminium. Polarized Raman spectra of tetraphenylporphyrin demonstrated the oriented deposition of porphyrin crystallites on the Au substrate using the drop coating technique. The emission anisotropy suggests that the deposited crystallites are arranged outward radially with the porphyrin ring orientation. The orientation is signed by the NHHN axis that is parallel to the radial vector along the X-axis. Moreover, it also demonstrates high chemical stability after preservation and repeated measurements. The Raman signal on a gold substrate is enhanced more than on other substrates beyond mere preconcentration of analytes or the coffee-ring effect only, which might be due to the contribution of the SERRS effect. This effect will be discussed based on the interactions among localized surface plasmons, vibronic transitions, and Raman active vibrational modes.
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Affiliation(s)
- Phutri Milana
- Inorganic and Physical Chemistry Research Division, Department of Chemistry, Faculty of Mathematics and Natural Sciences, Institut Teknologi Bandung, Jalan Ganesha 10, Bandung 40132, Indonesia.
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Interference among Multiple Vibronic Modes in Two-Dimensional Electronic Spectroscopy. MATHEMATICS 2020. [DOI: 10.3390/math8020157] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Vibronic coupling between electronic and vibrational states in molecules plays a critical role in most photo-induced phenomena. Many key details about a molecule’s vibronic coupling are hidden in linear spectroscopic measurements, and therefore nonlinear optical spectroscopy methods such as two-dimensional electronic spectroscopy (2D ES) have become more broadly adopted. A single vibrational mode of a molecule leads to a Franck–Condon progression of peaks in a 2D spectrum. Each peak oscillates as a function of the waiting time, and Fourier transformation can produce a spectral slice known as a ‘beating map’ at the oscillation frequency. The single vibrational mode produces a characteristic peak structure in the beating map. Studies of single modes have limited utility, however, because most molecules have numerous vibrational modes that couple to the electronic transition. Interactions or interference among the modes may lead to complicated peak patterns in each beating map. Here, we use lineshape-function theory to simulate 2D ES arising from a system having multiple vibrational modes. The simulations reveal that the peaks in each beating map are affected by all of the vibrational modes and therefore do not isolate a single mode, which was anticipated.
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de Souza B, Farias G, Neese F, Izsák R. Efficient simulation of overtones and combination bands in resonant Raman spectra. J Chem Phys 2019; 150:214102. [DOI: 10.1063/1.5099247] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Bernardo de Souza
- Departmento de Química, Universidade Federal de Santa Catarina, Santa Catarina, Brazil
| | - Giliandro Farias
- Departmento de Química, Universidade Federal de Santa Catarina, Santa Catarina, Brazil
| | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany
| | - Róbert Izsák
- Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany
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Ding T, Sigle DO, Herrmann LO, Wolverson D, Baumberg JJ. Nanoimprint lithography of Al nanovoids for deep-UV SERS. ACS APPLIED MATERIALS & INTERFACES 2014; 6:17358-63. [PMID: 25291629 PMCID: PMC4230348 DOI: 10.1021/am505511v] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2014] [Accepted: 10/07/2014] [Indexed: 05/21/2023]
Abstract
Deep-ultraviolet surface-enhanced Raman scattering (UV-SERS) is a promising technique for bioimaging and detection because many biological molecules possess UV absorption lines leading to strongly resonant Raman scattering. Here, Al nanovoid substrates are developed by combining nanoimprint lithography of etched polymer/silica opal films with electron beam evaporation, to give a high-performance sensing platform for UV-SERS. Enhancement by more than 3 orders of magnitude in the UV-SERS performance was obtained from the DNA base adenine, matching well the UV plasmonic optical signatures and simulations, demonstrating its suitability for biodetection.
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Affiliation(s)
- Tao Ding
- Nanophotonics
Centre, Cavendish Laboratory, University
of Cambridge, Cambridge CB3 0HE, United Kingdom
| | - Daniel O. Sigle
- Nanophotonics
Centre, Cavendish Laboratory, University
of Cambridge, Cambridge CB3 0HE, United Kingdom
| | - Lars O. Herrmann
- Nanophotonics
Centre, Cavendish Laboratory, University
of Cambridge, Cambridge CB3 0HE, United Kingdom
| | - Daniel Wolverson
- Department
of Physics, University of Bath, Bath BA2 7AY, United Kingdom
| | - Jeremy J. Baumberg
- Nanophotonics
Centre, Cavendish Laboratory, University
of Cambridge, Cambridge CB3 0HE, United Kingdom
- E-mail:
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Emmons ED, Tripathi A, Guicheteau JA, Fountain AW, Christesen SD. Ultraviolet Resonance Raman Spectroscopy of Explosives in Solution and the Solid State. J Phys Chem A 2013; 117:4158-66. [DOI: 10.1021/jp402585u] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Erik D. Emmons
- Science Applications International Corporation, Post Office Box 68, Gunpowder
Branch, Aberdeen Proving Ground, Maryland 21010-5424, United States
| | - Ashish Tripathi
- Science Applications International Corporation, Post Office Box 68, Gunpowder
Branch, Aberdeen Proving Ground, Maryland 21010-5424, United States
| | - Jason A. Guicheteau
- Research and Technology Directorate, Edgewood Chemical Biological Center, Aberdeen Proving
Ground, Maryland 21010-5424, United States
| | - Augustus W. Fountain
- Research and Technology Directorate, Edgewood Chemical Biological Center, Aberdeen Proving
Ground, Maryland 21010-5424, United States
| | - Steven D. Christesen
- Research and Technology Directorate, Edgewood Chemical Biological Center, Aberdeen Proving
Ground, Maryland 21010-5424, United States
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10
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Wen G, Zhong B, Huang X, Yu H, Zhang X, Zhang T, Bai H. Novel BN Hollow Microspheres with Open Mouths - Facile Synthesis, Growth Mechanism, Resonant Raman Scattering Effect, and Cathodoluminescence Performance. Eur J Inorg Chem 2010. [DOI: 10.1002/ejic.201000703] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Raman spectroscopy is a convenient technique for the efficient evaluation of cyclodextrin inclusion molecular complexes of azo-dye colorants and largely polarisable guest molecules. J INCL PHENOM MACRO 2009. [DOI: 10.1007/s10847-009-9538-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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12
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Achievements in resonance Raman spectroscopy. Anal Chim Acta 2008; 606:119-34. [DOI: 10.1016/j.aca.2007.11.006] [Citation(s) in RCA: 209] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2007] [Revised: 10/31/2007] [Accepted: 11/02/2007] [Indexed: 11/21/2022]
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Efremov EV, Buijs JB, Gooijer C, Ariese F. Fluorescence rejection in resonance Raman spectroscopy using a picosecond-gated intensified charge-coupled device camera. APPLIED SPECTROSCOPY 2007; 61:571-8. [PMID: 17650366 DOI: 10.1366/000370207781269873] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
A Raman instrument was assembled and tested that rejects typically 98-99% of background fluorescence. Use is made of short (picosecond) laser pulses and time-gated detection in order to record the Raman signals during the pulse while blocking most of the fluorescence. Our approach uses an ultrafast-gated intensified charge-coupled device (ICCD) camera as a simple and straightforward alternative to ps Kerr gating. The fluorescence rejection efficiency depends mainly on the fluorescence lifetime and on the closing speed of the gate (which is about 80 ps in our setup). A formula to calculate this rejection factor is presented. The gated intensifier can be operated at 80 MHz, so high repetition rates and low pulse energies can be used, thus minimizing photodegradation. For excitation we use a frequency-tripled or -doubled Ti : sapphire laser with a pulse width of 3 ps; it should not be shorter in view of the required spectral resolution. Other critical aspects tested include intensifier efficiency as a function of gate width, uniformity of the gate pulse across the spectrum, and spectral resolution in comparison with ungated detection. The total instrumental resolution is 7 cm(-1) in the blue and 15 cm(-1) in the ultraviolet (UV) region. The setup allows one to use resonance Raman spectroscopy (RRS) for extra sensitivity and selectivity, even in the case of strong background fluorescence. Excitation wavelengths in the visible or UV range no longer have to be avoided. The effectiveness of this setup is demonstrated on a test system: pyrene in the presence of toluene fluorescence (lambda(exc) = 257 nm). Furthermore, good time-gated RRS spectra are shown for a strongly fluorescent flavoprotein (lambda(exc) = 405 nm). Advantages and disadvantages of this approach for RRS are discussed.
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Affiliation(s)
- Evtim V Efremov
- Department of Analytical Chemistry and Applied Spectroscopy, Laser Centre Vrije Universiteit Amsterdam, the Netherlands
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Yamakita Y, Kimura J, Ohno K. Molecular vibrations of [n]oligoacenes (n=2−5 and 10) and phonon dispersion relations of polyacene. J Chem Phys 2007; 126:064904. [PMID: 17313241 DOI: 10.1063/1.2434782] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
As model compounds for nanosize carbon clusters, the phonon dispersion curves of polyacene are constructed based on density functional theory calculations for [n]oligoacenes (n=2-5, 10, and 15). Complete vibrational assignments are given for the observed Fourier-transform infrared and Raman spectra of [n]oligoacenes (n=2-5). Raman intensity distributions by the 1064-nm excitation are well reproduced by the polarizability-approximation calculations for naphthalene and anthracene, whereas several bands of naphthacene and pentacene at 1700-1100 cm(-1) are calculated to be enhanced by the resonance Raman effect. It is found from vibronic calculations that the coupled a(g) modes between the Kekulé deformation and joint CC stretching give rise to the Raman enhancements of the Franck-Condon type, and that the b(3g) mode corresponding to the graphite G mode is enhanced by vibronic coupling between the (1)L(a)((1)B(1u)) and (1)B(b)((1)B(2u)) states. The phonon dispersion curves of polyacene provide a uniform foundation for understanding molecular vibrations of the oligoacenes in terms of the phase difference. The mode correlated with the defect-sensitive D mode of the bulk carbon networks is also found for the present one-dimensional system.
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Affiliation(s)
- Yoshihiro Yamakita
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan.
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