Computational neural networks driving complex analytical problem solving

Artificial Neural Networks (ANNs) and Partial Least Squares (PLS) Regression in the Quantitative Analysis of Respirable Crystalline Silica by Fourier-Transform Infrared Spectroscopy (FTIR)

Respirable crystalline silica (RCS) overexposure can lead to the development of silicosis which is a chronic, irreversible, potentially fatal respiratory disease. The most significant prerequisite for any silica exposure control plan is an accurate occupational exposure assessment. The results of crystalline silica analysis are often affected by other mineral interferences and are influenced by an analyst's knowledge of mineralogy to accurately interpret infrared spectra and correct matrix interferences. Partial least squares (PLS) and artificial neural networks (ANNs) are two multivariate calibration methods to overcome the problem of spectral interferences without the need for an analyst intervention. The performance of these two methods in quantitative analysis of quartz in the presence of mineral interferences was evaluated and compared in this study. Fifty mixtures with different crystalline silica content ratios were prepared by mixing quartz with four common mineral interferences including kaolinite, albite, muscovite, and amorphous silica. Fourier-transform infrared spectra of the mixtures were split into training and test datasets. The optimal architecture of the ANN model was achieved using a two-level full factorial design experiment and data were modeled using ANN and PLS regression analysis. Root mean squared error of prediction values of 1.69 and 6.12 µg quartz for ANN and PLS models, respectively, revealed the fact that the both models performed very well in quantitative analysis of quartz in the presence of mineral interferences, with a better relative performance of the ANN model which can be related to the inherent nonlinear predictive ability of ANNs. Given the excellent predictive ability of the ANN model which can deal with a completely overlapped peak without any need of user's intervention, it is recommended that the ANN model be optimized in future studies and utilized for reliable and rapid on-field assessment of RCS exposure.

Simultaneous Voltammetric Determination of Acetaminophen, Ascorbic Acid and Uric Acid by Use of Integrated Array of Screen-Printed Electrodes and Chemometric Tools

In the present work, ternary mixtures of Acetaminophen, Ascorbic acid and Uric acid were resolved using the Electronic tongue (ET) principle and Cyclic voltammetry (CV) technique. The screen-printed integrated electrode array having differentiated response for the three oxidizable compounds was formed by Graphite, Prussian blue (PB), Cobalt (II) phthalocyanine (CoPc) and Copper oxide (II) (CuO) ink-modified carbon electrodes. A set of samples, ranging from 0 to 500 µmol·L⁻¹, was prepared, using a tilted (3³) factorial design in order to build the quantitative response model. Subsequently, the model performance was evaluated with an external subset of samples defined randomly along the experimental domain. Partial Least Squares Regression (PLS) was employed to construct the quantitative model. Finally, the model successfully predicted the concentration of the three compounds with a normalized root mean square error (NRMSE) of 1.00 and 0.99 for the training and test subsets, respectively, and R² ≥ 0.762 for the obtained vs. expected comparison graphs. In this way, a screen-printed integrated electrode platform can be successfully used for voltammetric ET applications.

A Voltammetric Electronic Tongue for the Resolution of Ternary Nitrophenol Mixtures

This work reports the applicability of a voltammetric sensor array able to quantify the content of 2,4-dinitrophenol, 4-nitrophenol, and picric acid in artificial samples using the electronic tongue (ET) principles. The ET is based on cyclic voltammetry signals, obtained from an array of metal disk electrodes and a graphite epoxy composite electrode, compressed using discrete wavelet transform with chemometric tools such as artificial neural networks (ANNs). ANNs were employed to build the quantitative prediction model. In this manner, a set of standards based on a full factorial design, ranging from 0 to 300 mg·L^-1, was prepared to build the model; afterward, the model was validated with a completely independent set of standards. The model successfully predicted the concentration of the three considered phenols with a normalized root mean square error of 0.030 and 0.076 for the training and test subsets, respectively, and r ≥ 0.948.

Sensitivity, Prediction Uncertainty, and Detection Limit for Artificial Neural Network Calibrations

With the proliferation of multivariate calibration methods based on artificial neural networks, expressions for the estimation of figures of merit such as sensitivity, prediction uncertainty, and detection limit are urgently needed. This would bring nonlinear multivariate calibration methodologies to the same status as the linear counterparts in terms of comparability. Currently only the average prediction error or the ratio of performance to deviation for a test sample set is employed to characterize and promote neural network calibrations. It is clear that additional information is required. We report for the first time expressions that easily allow one to compute three relevant figures: (1) the sensitivity, which turns out to be sample-dependent, as expected, (2) the prediction uncertainty, and (3) the detection limit. The approach resembles that employed for linear multivariate calibration, i.e., partial least-squares regression, specifically adapted to neural network calibration scenarios. As usual, both simulated and real (near-infrared) spectral data sets serve to illustrate the proposal.

A single fluorophore to address multiple logic gates

Logic gates with different radixes have been constructed using a biologically active molecule, 2-(4′-N,N-dimethylaminophenyl)imidazo[4,5-b]pyridine (DMAPIP-b).

Rapid and sensitive ultrasonic-assisted derivatisation microextraction (UDME) technique for bitter taste-free amino acids (FAA) study by HPLC-FLD

Amino acids, as the main contributors to taste, are usually found in relatively high levels in bitter foods. In this work, we focused on seeking a rapid, sensitive and simple method to determine FAA for large batches of micro-samples and to explore the relationship between FAA and bitterness. Overall condition optimisation indicated that the new UDME technique offered higher derivatisation yields and extraction efficiencies than traditional methods. Only 35min was needed in the whole operation process. Very low LLOQ (Lower limit of quantification: 0.21-5.43nmol/L) for FAA in twelve bitter foods was obtained, with which BTT (bitter taste thresholds) and CABT (content of FAA at BTT level) were newly determined. The ratio of CABT to BTT increased with decreasing of BTT. This work provided powerful potential for the high-throughput trace analysis of micro-sample and also a methodology to study the relationship between the chemical constituents and the taste.

Implementation of a genetically tuned neural platform in optimizing fluorescence from receptor-ligand binding interactions on microchips

This paper describes the use of a genetically tuned neural network platform to optimize the fluorescence realized upon binding 5-carboxyfluorescein-D-Ala-D-Ala-D-Ala (5-FAM-(D-Ala)(3) ) (1) to the antibiotic teicoplanin from Actinoplanes teichomyceticus electrostatically attached to a microfluidic channel originally modified with 3-aminopropyltriethoxysilane. Here, three parameters: (i) the length of time teicoplanin was in the microchannel; (ii) the length of time 1 was in the microchannel, thereby, in equilibrium with teicoplanin, and; (iii) the amount of time buffer was flushed through the microchannel to wash out any unbound 1 remaining in the channel, are examined at a constant concentration of 1, with neural network methodology applied to optimize fluorescence. Optimal neural structure provided a best fit model, both for the training set (r(2) = 0.985) and testing set (r(2) = 0.967) data. Simulated results were experimentally validated demonstrating efficiency of the neural network approach and proved superior to the use of multiple linear regression and neural networks using standard back propagation.

Hyperspectral imaging based method for fast characterization of kidney stone types

The formation of kidney stones is a common and highly studied disease, which causes intense pain and presents a high recidivism. In order to find the causes of this problem, the characterization of the main compounds is of great importance. In this sense, the analysis of the composition and structure of the stone can give key information about the urine parameters during the crystal growth. But the usual methods employed are slow, analyst dependent and the information obtained is poor. In the present work, the near infrared (NIR)-hyperspectral imaging technique was used for the analysis of 215 samples of kidney stones, including the main types usually found and their mixtures. The NIR reflectance spectra of the analyzed stones showed significant differences that were used for their classification. To do so, a method was created by the use of artificial neural networks, which showed a probability higher than 90% for right classification of the stones. The promising results, robust methodology, and the fast analytical process, without the need of an expert assistance, lead to an easy implementation at the clinical laboratories, offering the urologist a rapid diagnosis that shall contribute to minimize urolithiasis recidivism.

Bioinformatics Tools for Mass Spectroscopy-Based Metabolomic Data Processing and Analysis

Biological systems are increasingly being studied in a holistic manner, using omics approaches, to provide quantitative and qualitative descriptions of the diverse collection of cellular components. Among the omics approaches, metabolomics, which deals with the quantitative global profiling of small molecules or metabolites, is being used extensively to explore the dynamic response of living systems, such as organelles, cells, tissues, organs and whole organisms, under diverse physiological and pathological conditions. This technology is now used routinely in a number of applications, including basic and clinical research, agriculture, microbiology, food science, nutrition, pharmaceutical research, environmental science and the development of biofuels. Of the multiple analytical platforms available to perform such analyses, nuclear magnetic resonance and mass spectrometry have come to dominate, owing to the high resolution and large datasets that can be generated with these techniques. The large multidimensional datasets that result from such studies must be processed and analyzed to render this data meaningful. Thus, bioinformatics tools are essential for the efficient processing of huge datasets, the characterization of the detected signals, and to align multiple datasets and their features. This paper provides a state-of-the-art overview of the data processing tools available, and reviews a collection of recent reports on the topic. Data conversion, pre-processing, alignment, normalization and statistical analysis are introduced, with their advantages and disadvantages, and comparisons are made to guide the reader.