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Li S, Harir M, Bastviken D, Schmitt-Kopplin P, Gonsior M, Enrich-Prast A, Valle J, Hertkorn N. Dearomatization drives complexity generation in freshwater organic matter. Nature 2024; 628:776-781. [PMID: 38658683 PMCID: PMC11043043 DOI: 10.1038/s41586-024-07210-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Accepted: 02/20/2024] [Indexed: 04/26/2024]
Abstract
Dissolved organic matter (DOM) is one of the most complex, dynamic and abundant sources of organic carbon, but its chemical reactivity remains uncertain1-3. Greater insights into DOM structural features could facilitate understanding its synthesis, turnover and processing in the global carbon cycle4,5. Here we use complementary multiplicity-edited 13C nuclear magnetic resonance (NMR) spectra to quantify key substructures assembling the carbon skeletons of DOM from four main Amazon rivers and two mid-size Swedish boreal lakes. We find that one type of reaction mechanism, oxidative dearomatization (ODA), widely used in organic synthetic chemistry to create natural product scaffolds6-10, is probably a key driver for generating structural diversity during processing of DOM that are rich in suitable polyphenolic precursor molecules. Our data suggest a high abundance of tetrahedral quaternary carbons bound to one oxygen and three carbon atoms (OCqC3 units). These units are rare in common biomolecules but could be readily produced by ODA of lignin-derived and tannin-derived polyphenols. Tautomerization of (poly)phenols by ODA creates non-planar cyclohexadienones, which are subject to immediate and parallel cycloadditions. This combination leads to a proliferation of structural diversity of DOM compounds from early stages of DOM processing, with an increase in oxygenated aliphatic structures. Overall, we propose that ODA is a key reaction mechanism for complexity acceleration in the processing of DOM molecules, creation of new oxygenated aliphatic molecules and that it could be prevalent in nature.
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Affiliation(s)
- Siyu Li
- Research Unit Analytical Biogeochemistry (BGC), Helmholtz Munich, German Research Center for Environmental Health, Neuherberg, Germany
| | - Mourad Harir
- Research Unit Analytical Biogeochemistry (BGC), Helmholtz Munich, German Research Center for Environmental Health, Neuherberg, Germany
- Chair of Analytical Food Chemistry, Technische Universität München, Freising-Weihenstephan, Germany
| | - David Bastviken
- Department of Thematic Studies - Environmental Change, Linköping University, Linköping, Sweden
| | - Philippe Schmitt-Kopplin
- Research Unit Analytical Biogeochemistry (BGC), Helmholtz Munich, German Research Center for Environmental Health, Neuherberg, Germany
- Chair of Analytical Food Chemistry, Technische Universität München, Freising-Weihenstephan, Germany
| | - Michael Gonsior
- Chesapeake Biological Laboratory, University of Maryland Center for Environmental Science, Solomons, MD, USA
| | - Alex Enrich-Prast
- Department of Thematic Studies - Environmental Change, Linköping University, Linköping, Sweden
- Institute of Marine Science, Federal University of São Paulo, Santos, Brazil
| | - Juliana Valle
- Research Unit Analytical Biogeochemistry (BGC), Helmholtz Munich, German Research Center for Environmental Health, Neuherberg, Germany
| | - Norbert Hertkorn
- Research Unit Analytical Biogeochemistry (BGC), Helmholtz Munich, German Research Center for Environmental Health, Neuherberg, Germany.
- Department of Thematic Studies - Environmental Change, Linköping University, Linköping, Sweden.
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Barras BJ, Ling T, Rivas F. Recent Advances in Chemistry and Antioxidant/Anticancer Biology of Monoterpene and Meroterpenoid Natural Product. Molecules 2024; 29:279. [PMID: 38202861 PMCID: PMC10780832 DOI: 10.3390/molecules29010279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Revised: 12/14/2023] [Accepted: 12/21/2023] [Indexed: 01/12/2024] Open
Abstract
Monoterpenes and meroterpenes are two large classes of isoprene-based molecules produced by terrestrial plants and unicellular organisms as diverse secondary metabolites. The global rising incidence of cancer has led to a renewed interest in natural products. These monoterpenes and meroterpenes represent a novel source of molecular scaffolds that can serve as medicinal chemistry platforms for the development of potential preclinical leads. Furthermore, some of these natural products are either abundant, or their synthetic strategies are scalable as it will be indicated here, facilitating their derivatization to expand their scope in drug discovery. This review is a collection of representative updates (from 2016-2023) in biologically active monoterpene and meroterpenoid natural products and focuses on the recent findings of the pharmacological potential of these bioactive compounds as well as the newly developed synthetic strategies employed to access them. Particular emphasis will be placed on the anticancer and antioxidant potential of these compounds in order to raise knowledge for further investigations into the development of potential anti-cancer therapeutics. The mounting experimental evidence from various research groups across the globe regarding the use of these natural products at pre-clinical levels, renders them a fast-track research area worth of attention.
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Affiliation(s)
| | - Taotao Ling
- Department of Chemistry, Louisiana State University, 133 Choppin Hall, Baton Rouge, LA 70803, USA;
| | - Fatima Rivas
- Department of Chemistry, Louisiana State University, 133 Choppin Hall, Baton Rouge, LA 70803, USA;
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Sanchez A, Maimone TJ. Taming Shapeshifting Anions: Total Synthesis of Ocellatusone C. J Am Chem Soc 2022; 144:7594-7599. [PMID: 35420799 DOI: 10.1021/jacs.2c02627] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Guided by a synthetic design aimed at late-stage diversification, we report the preparation of unusual shapeshifting anions and their subsequent application to the total synthesis of the polyketide natural product ocellatusone C. Site-selective core functionalization of a readily accessible bicyclo[3.3.1]nonane architecture sets the stage for shape-selective side chain installation via a nonfluxional π-allyl Pd-complex derived from a barbaralyl-type anion. Several interesting chemical findings, including substituent-dependent bridged bicycloisomerism and the isolation of a stabilized, 3° carbon-bound Pd-ketone enolate complex, are reported.
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Affiliation(s)
- Andre Sanchez
- Department of Chemistry, University of California─Berkeley, 826 Latimer Hall, Berkeley, California 94720, United States
| | - Thomas J Maimone
- Department of Chemistry, University of California─Berkeley, 826 Latimer Hall, Berkeley, California 94720, United States
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Announcing Accounts Journal Club. Acc Chem Res 2021; 54:1307-1308. [PMID: 33646751 DOI: 10.1021/acs.accounts.1c00142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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