1
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Mei Y, Che F, Deskins NA. Modeling interfacial electric fields and the ethanol oxidation reaction at electrode surfaces. Phys Chem Chem Phys 2024. [PMID: 39463334 DOI: 10.1039/d4cp02765e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/29/2024]
Abstract
The electrochemical environment present at surfaces can have a large effect on intended applications. Such environments may occur, for instance, at battery or electrocatalyst surfaces. Solvent, co-adsorbates, and electrical field effects may strongly influence surface chemistry. Understanding these phenomena is an on-going area of research, especially in the realm of electrocatalysis. Herein, we modeled key steps in the ethanol oxidation reaction (EOR) over a common EOR catalyst, Rh(111), using density functional theory. We assessed how the presence of electrical fields may influence important C-C and C-H bond scission and C-O bond formation reactions with and without co-adsorbed water. We found that electric fields combined with the presence of water can significantly affect surface chemistry, including adsorption and reaction energies. Our results show that C-C scission (necessary for the complete oxidation of ethanol) is most likely through CHxCO adsorbates. With no electric field or solvent present C-C scission of CHCO has the lowest reaction energy and dominates the oxidation of ethanol. But when applying strong negative fields (with or without solvent), the C-C scission of CH2CO and CHCO becomes competitive. The current work provides insights into how electric fields and water solvent affect EOR, especially when simulated using density functional theory.
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Affiliation(s)
- Yuhan Mei
- Department of Chemical Engineering, Worcester Polytechnic Institute, Worcester, Massachusetts 01609, USA.
| | - Fanglin Che
- Department of Chemical Engineering, University of Massachusetts Lowell, Lowell, Massachusetts 01854, USA
| | - N Aaron Deskins
- Department of Chemical Engineering, Worcester Polytechnic Institute, Worcester, Massachusetts 01609, USA.
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2
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Jia M, Wang J, Liu Q, Yang X, Zhang C. Molecular picture of electric double layers with weakly adsorbed water. J Chem Phys 2024; 161:104702. [PMID: 39248384 DOI: 10.1063/5.0226111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2024] [Accepted: 08/08/2024] [Indexed: 09/10/2024] Open
Abstract
Water adsorption energy, Eads, is a key physical quantity in sustainable chemical technologies such as (photo)electrocatalytic water splitting, water desalination, and water harvesting. In many of these applications, the electrode surface is operated outside the point (potential) of zero charge, which attracts counter-ions to form the electric double layer and controls the surface properties. Here, by applying density functional theory-based finite-field molecular dynamics simulations, we have studied the effect of water adsorption energy Eads on surface acidity and the Helmholtz capacitance of BiVO4 as an example of metal oxide electrodes with weakly chemisorbed water. This allows us to establish the effect of Eads on the coordination number, the H-bond network, and the orientation of chemisorbed water by comparing an oxide series composed of BiVO4, TiO2, and SnO2. In particular, it is found that a positive correlation exists between the degree of asymmetry ΔCH in the Helmholtz capacitance and the strength of Eads. This correlation is verified and extended further to graphene-like systems with physisorbed water, where the electric double layers (EDLs) are controlled by electronic charge rather than proton charge as in the oxide series. Therefore, this work reveals a general relationship between water adsorption energy Eads and EDLs, which is relevant to both electrochemical reactivity and the electrowetting of aqueous interfaces.
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Affiliation(s)
- Mei Jia
- Henan Key Laboratory of Biomolecular Recognition and Sensing, Henan Joint International Research Laboratory of Chemo/Biosensing and Early Diagnosis of Major Diseases, College of Chemistry and Chemical Engineering, Shangqiu Normal University, Shangqiu 476000, China
| | - Junyi Wang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Qixiang Liu
- Laboratory Construction and Management Center, Shangqiu Normal University, Shangqiu 476000, China
| | - Xiaohui Yang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Chao Zhang
- Department of Chemistry - Ångström Laboratory, Uppsala University, Lägerhyddsvägen 1, P. O. Box 538, 75121 Uppsala, Sweden
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3
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Ma N, Wang S, Liu M, Zhu H, Liu Q, Kong J, Zhang T. Controllable radical polymerization of TEMPO redox for stable and sensitive enzyme electrode interface. Biosens Bioelectron 2024; 259:116417. [PMID: 38795496 DOI: 10.1016/j.bios.2024.116417] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Revised: 04/25/2024] [Accepted: 05/20/2024] [Indexed: 05/28/2024]
Abstract
Assembling functional molecules on the surface of an enzyme electrode is the most basic technique for constructing a biosensor. However, precise control of electron transfer interface or electron mediator on the electrode surface remains a challenge, which is a key step that affects the stability and sensitivity of enzyme-based biosensors. In this study, we propose the use of controllable free radical polymerization to grow stable 2,2,6,6-tetramethylpiperidine-1-oxyl (TEMPO) polymer as electron mediator on enzyme surface for the first time. Through scanning electron microscopy (SEM), Raman spectroscopy, electrode surface coverage measurement, static contact angle (SCA), and a series of electrochemical methods, it has been demonstrated that the TEMPO-based enzyme electrode exhibits a uniform hydrophilic morphology and stable electrochemical performance. Furthermore, the results show that the sensor demonstrates high sensitivity for detecting glucose biomolecules in artificial sweat and serum. Attributing to the quantitative and controllable radical polymerization of TEMPO redox assembled enzyme electrode surface, the as-proposed biosensor providing a use, storage, and inter-batch sensing stability, providing a vital platform for wearable/implantable biochemical sensors.
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Affiliation(s)
- Nan Ma
- I-Lab, Key Laboratory of Multifunctional Nanomaterials and Smart Systems, Suzhou Institute of Nano-Tech and Nano-Bionics (SINANO), Chinese Academy of Sciences (CAS), 398 Ruoshui Road, Suzhou, Jiangsu 215123, PR China; School of Environmental and Biological Engineering, Nanjing University of Science and Technology, 200 Xiaolingwei Road, Nanjing, Jiangsu, 210094, PR China
| | - Shuqi Wang
- I-Lab, Key Laboratory of Multifunctional Nanomaterials and Smart Systems, Suzhou Institute of Nano-Tech and Nano-Bionics (SINANO), Chinese Academy of Sciences (CAS), 398 Ruoshui Road, Suzhou, Jiangsu 215123, PR China.
| | - Mengyuan Liu
- I-Lab, Key Laboratory of Multifunctional Nanomaterials and Smart Systems, Suzhou Institute of Nano-Tech and Nano-Bionics (SINANO), Chinese Academy of Sciences (CAS), 398 Ruoshui Road, Suzhou, Jiangsu 215123, PR China; School of Nano-Tech and Nano-Bionics, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui, 230026, PR China
| | - Hao Zhu
- I-Lab, Key Laboratory of Multifunctional Nanomaterials and Smart Systems, Suzhou Institute of Nano-Tech and Nano-Bionics (SINANO), Chinese Academy of Sciences (CAS), 398 Ruoshui Road, Suzhou, Jiangsu 215123, PR China
| | - Qianzuo Liu
- I-Lab, Key Laboratory of Multifunctional Nanomaterials and Smart Systems, Suzhou Institute of Nano-Tech and Nano-Bionics (SINANO), Chinese Academy of Sciences (CAS), 398 Ruoshui Road, Suzhou, Jiangsu 215123, PR China
| | - Jinming Kong
- School of Environmental and Biological Engineering, Nanjing University of Science and Technology, 200 Xiaolingwei Road, Nanjing, Jiangsu, 210094, PR China.
| | - Ting Zhang
- I-Lab, Key Laboratory of Multifunctional Nanomaterials and Smart Systems, Suzhou Institute of Nano-Tech and Nano-Bionics (SINANO), Chinese Academy of Sciences (CAS), 398 Ruoshui Road, Suzhou, Jiangsu 215123, PR China; School of Nano-Tech and Nano-Bionics, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui, 230026, PR China; Nano-X Vacuum Interconnected Workstation, Key Laboratory of Multifunctional Nanomaterials and Smart Systems, Suzhou Institute of Nano-Tech and Nano-Bionics (SINANO), Chinese Academy of Sciences (CAS), 398 Ruoshui Road, Suzhou, Jiangsu, 215123, PR China.
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4
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Jones TE, Teschner D, Piccinin S. Toward Realistic Models of the Electrocatalytic Oxygen Evolution Reaction. Chem Rev 2024; 124:9136-9223. [PMID: 39038270 DOI: 10.1021/acs.chemrev.4c00171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/24/2024]
Abstract
The electrocatalytic oxygen evolution reaction (OER) supplies the protons and electrons needed to transform renewable electricity into chemicals and fuels. However, the OER is kinetically sluggish; it operates at significant rates only when the applied potential far exceeds the reversible voltage. The origin of this overpotential is hidden in a complex mechanism involving multiple electron transfers and chemical bond making/breaking steps. Our desire to improve catalytic performance has then made mechanistic studies of the OER an area of major scientific inquiry, though the complexity of the reaction has made understanding difficult. While historically, mechanistic studies have relied solely on experiment and phenomenological models, over the past twenty years ab initio simulation has been playing an increasingly important role in developing our understanding of the electrocatalytic OER and its reaction mechanisms. In this Review we cover advances in our mechanistic understanding of the OER, organized by increasing complexity in the way through which the OER is modeled. We begin with phenomenological models built using experimental data before reviewing early efforts to incorporate ab initio methods into mechanistic studies. We go on to cover how the assumptions in these early ab initio simulations─no electric field, electrolyte, or explicit kinetics─have been relaxed. Through comparison with experimental literature, we explore the veracity of these different assumptions. We summarize by discussing the most critical open challenges in developing models to understand the mechanisms of the OER.
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Affiliation(s)
- Travis E Jones
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
- Department of Inorganic Chemistry, Fritz-Haber-Institute of the Max-Planck-Society, Berlin 14195, Germany
| | - Detre Teschner
- Department of Inorganic Chemistry, Fritz-Haber-Institute of the Max-Planck-Society, Berlin 14195, Germany
- Department of Heterogeneous Reactions, Max-Planck-Institute for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany
| | - Simone Piccinin
- Consiglio Nazionale delle Ricerche, Istituto Officina dei Materiali, Trieste 34136, Italy
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5
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Ahart CS, Chulkov SK, Cucinotta CS. Enabling Ab Initio Molecular Dynamics under Bias: The CP2K+SMEAGOL Interface for Integrating Density Functional Theory and Non-Equilibrium Green Functions. J Chem Theory Comput 2024; 20:6772-6780. [PMID: 39013589 PMCID: PMC11325543 DOI: 10.1021/acs.jctc.4c00371] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/18/2024]
Abstract
Density functional theory (DFT) combined with non-equilibrium Green's functions (NEGF) is a powerful approach to model quantum transport under external bias potentials at reasonable computational cost. In this work, we present a new interface between the popular mixed Gaussian/plane waves electronic structure package, CP2K, and the NEGF, code SMEAGOL, the most feature-rich implementation of DFT-NEGF available for CP2K to date. The CP2K+SMEAGOL interface includes the implementation of current induced forces. We verify this implementation for a variety of systems: an infinite 1D Au wire, a parallel-plate capacitor, and a Au-H2-Au junction. We find good agreement with SMEAGOL calculations performed with SIESTA for the same systems and with the example of a solvated Au wire demonstrating for the first time that DFT-NEGF can be used to perform molecular dynamics simulations under bias of large-scale condensed phase systems under realistic operating conditions.
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Affiliation(s)
- Christian S Ahart
- Imperial College London, Department of Chemistry and Thomas Young Centre, Molecular Sciences Research Hub, London W12 0BZ, U.K
| | - Sergey K Chulkov
- University of Lincoln, School of Mathematics and Physics, Lincoln LN6 7TS, U.K
| | - Clotilde S Cucinotta
- Imperial College London, Department of Chemistry and Thomas Young Centre, Molecular Sciences Research Hub, London W12 0BZ, U.K
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6
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Song Z, Wang X, Feng W, Armand M, Zhou Z, Zhang H. Designer Anions for Better Rechargeable Lithium Batteries and Beyond. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024; 36:e2310245. [PMID: 38839065 DOI: 10.1002/adma.202310245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 04/17/2024] [Indexed: 06/07/2024]
Abstract
Non-aqueous electrolytes, generally consisting of metal salts and solvating media, are indispensable elements for building rechargeable batteries. As the major sources of ionic charges, the intrinsic characters of salt anions are of particular importance in determining the fundamental properties of bulk electrolyte, as well as the features of the resulting electrode-electrolyte interphases/interfaces. To cope with the increasing demand for better rechargeable batteries requested by emerging application domains, the structural design and modifications of salt anions are highly desired. Here, salt anions for lithium and other monovalent (e.g., sodium and potassium) and multivalent (e.g., magnesium, calcium, zinc, and aluminum) rechargeable batteries are outlined. Fundamental considerations on the design of salt anions are provided, particularly involving specific requirements imposed by different cell chemistries. Historical evolution and possible synthetic methodologies for metal salts with representative salt anions are reviewed. Recent advances in tailoring the anionic structures for rechargeable batteries are scrutinized, and due attention is paid to the paradigm shift from liquid to solid electrolytes, from intercalation to conversion/alloying-type electrodes, from lithium to other kinds of rechargeable batteries. The remaining challenges and key research directions in the development of robust salt anions are also discussed.
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Affiliation(s)
- Ziyu Song
- Key Laboratory of Material Chemistry for Energy Conversion and Storage (Ministry of Education), School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan, 430074, China
| | - Xingxing Wang
- Key Laboratory of Material Chemistry for Energy Conversion and Storage (Ministry of Education), School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan, 430074, China
| | - Wenfang Feng
- Key Laboratory of Material Chemistry for Energy Conversion and Storage (Ministry of Education), School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan, 430074, China
| | - Michel Armand
- Centre for Cooperative Research on Alternative Energies (CIC energiGUNE), Basque Research and Technology Alliance (BRTA), Alava Technology Park, Albert Einstein 48, Vitoria-Gasteiz, 01510, Spain
| | - Zhibin Zhou
- Key Laboratory of Material Chemistry for Energy Conversion and Storage (Ministry of Education), School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan, 430074, China
| | - Heng Zhang
- Key Laboratory of Material Chemistry for Energy Conversion and Storage (Ministry of Education), School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan, 430074, China
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7
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Wan K, He J, Shi X. Construction of High Accuracy Machine Learning Interatomic Potential for Surface/Interface of Nanomaterials-A Review. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024; 36:e2305758. [PMID: 37640376 DOI: 10.1002/adma.202305758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 08/24/2023] [Indexed: 08/31/2023]
Abstract
The inherent discontinuity and unique dimensional attributes of nanomaterial surfaces and interfaces bestow them with various exceptional properties. These properties, however, also introduce difficulties for both experimental and computational studies. The advent of machine learning interatomic potential (MLIP) addresses some of the limitations associated with empirical force fields, presenting a valuable avenue for accurate simulations of these surfaces/interfaces of nanomaterials. Central to this approach is the idea of capturing the relationship between system configuration and potential energy, leveraging the proficiency of machine learning (ML) to precisely approximate high-dimensional functions. This review offers an in-depth examination of MLIP principles and their execution and elaborates on their applications in the realm of nanomaterial surface and interface systems. The prevailing challenges faced by this potent methodology are also discussed.
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Affiliation(s)
- Kaiwei Wan
- Laboratory of Theoretical and Computational Nanoscience, National Center for Nanoscience and Technology, Chinese Academy of Sciences, Beijing, 100190, China
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing, 100049, China
| | - Jianxin He
- Laboratory of Theoretical and Computational Nanoscience, National Center for Nanoscience and Technology, Chinese Academy of Sciences, Beijing, 100190, China
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing, 100049, China
| | - Xinghua Shi
- Laboratory of Theoretical and Computational Nanoscience, National Center for Nanoscience and Technology, Chinese Academy of Sciences, Beijing, 100190, China
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing, 100049, China
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8
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Mao Y, Yang L, Liu S, Song Y, Luo M, Guo Y. A theoretical study on toluene oxidization by OH radical. BMC Chem 2024; 18:72. [PMID: 38609951 PMCID: PMC11015615 DOI: 10.1186/s13065-024-01163-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Accepted: 03/08/2024] [Indexed: 04/14/2024] Open
Abstract
Toluene, a prominent member of volatile organic compounds (VOCs), exerts a substantial adverse influence on both human life and the environment. In the context of advanced oxidation processes, the ·OH radical emerges as a highly efficient oxidant, pivotal in the elimination of VOCs. This study employs computational quantum chemistry methods (G4MP2//B3LYP/6-311++G(d,p)) to systematically investigate the degradation of toluene by ·OH radicals in an implicit solvent model, and validates the rationale of choosing a single-reference method using T1 diagnostics. Our results suggest three possible reaction mechanisms for the oxidation of toluene by ·OH: firstly, the phenyl ring undergoes a hydrogen abstraction reaction followed by direct combination with ·OH to form cresol; secondly, ·OH directly adds to the phenyl ring, leading to ring opening; thirdly, oxidation of sidechain to benzoic acid followed by further addition and ring opening. The last two oxidation pathways involve the ring opening of toluene via the addition of ·OH, significantly facilitating the process. Therefore, both pathways are considered feasible for the degradation of toluene. Subsequently, the UV-H2O2 system was designed to induce the formation of ·OH for toluene degradation and to identify the optimal reaction conditions. It was demonstrated that ·OH and 1O2 are the primary active species for degrading toluene, with their contribution ranking as ·OH > 1O2. The intermediates in the mixture solution after reactions were characterized using GC-MS, demonstrating the validity of theoretical predictions. A comparative study of the toluene consumption rate revealed an experimental comprehensive activation energy of 10.33 kJ/mol, which is consistent with the preliminary activation energies obtained via theoretical analysis of these three mechanisms (0.56 kJ/mol to 13.66 kJ/mol), indicating that this theoretical method can provide a theoretical basis for experimental studies on the oxidation of toluene by ·OH.
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Affiliation(s)
- Yumin Mao
- Department of Environmental Science and Engineering, North China Electric Power University, Baoding, 071003, Hebei, China
- Hebei Key Laboratory of Multi-Pollutant Collaborative Control of Flue Gas From Coal-Fired Power Stations, Department of Environmental Science and Engineering, North China Electric Power University, Baoding, 071003, Hebei, China
| | - Lijuan Yang
- Department of Environmental Science and Engineering, North China Electric Power University, Baoding, 071003, Hebei, China.
- Hebei Key Laboratory of Multi-Pollutant Collaborative Control of Flue Gas From Coal-Fired Power Stations, Department of Environmental Science and Engineering, North China Electric Power University, Baoding, 071003, Hebei, China.
| | - Siqi Liu
- Department of Environmental Science and Engineering, North China Electric Power University, Baoding, 071003, Hebei, China
- Hebei Key Laboratory of Multi-Pollutant Collaborative Control of Flue Gas From Coal-Fired Power Stations, Department of Environmental Science and Engineering, North China Electric Power University, Baoding, 071003, Hebei, China
| | - Yunchang Song
- Department of Environmental Science and Engineering, North China Electric Power University, Baoding, 071003, Hebei, China
- Hebei Key Laboratory of Multi-Pollutant Collaborative Control of Flue Gas From Coal-Fired Power Stations, Department of Environmental Science and Engineering, North China Electric Power University, Baoding, 071003, Hebei, China
| | - Mengchao Luo
- Department of Environmental Science and Engineering, North China Electric Power University, Baoding, 071003, Hebei, China
- Hebei Key Laboratory of Multi-Pollutant Collaborative Control of Flue Gas From Coal-Fired Power Stations, Department of Environmental Science and Engineering, North China Electric Power University, Baoding, 071003, Hebei, China
| | - Yongxue Guo
- Department of Environmental Science and Engineering, North China Electric Power University, Baoding, 071003, Hebei, China
- Hebei Key Laboratory of Multi-Pollutant Collaborative Control of Flue Gas From Coal-Fired Power Stations, Department of Environmental Science and Engineering, North China Electric Power University, Baoding, 071003, Hebei, China
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9
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Monterroso B, Margolin W, Boersma AJ, Rivas G, Poolman B, Zorrilla S. Macromolecular Crowding, Phase Separation, and Homeostasis in the Orchestration of Bacterial Cellular Functions. Chem Rev 2024; 124:1899-1949. [PMID: 38331392 PMCID: PMC10906006 DOI: 10.1021/acs.chemrev.3c00622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 12/01/2023] [Accepted: 01/10/2024] [Indexed: 02/10/2024]
Abstract
Macromolecular crowding affects the activity of proteins and functional macromolecular complexes in all cells, including bacteria. Crowding, together with physicochemical parameters such as pH, ionic strength, and the energy status, influences the structure of the cytoplasm and thereby indirectly macromolecular function. Notably, crowding also promotes the formation of biomolecular condensates by phase separation, initially identified in eukaryotic cells but more recently discovered to play key functions in bacteria. Bacterial cells require a variety of mechanisms to maintain physicochemical homeostasis, in particular in environments with fluctuating conditions, and the formation of biomolecular condensates is emerging as one such mechanism. In this work, we connect physicochemical homeostasis and macromolecular crowding with the formation and function of biomolecular condensates in the bacterial cell and compare the supramolecular structures found in bacteria with those of eukaryotic cells. We focus on the effects of crowding and phase separation on the control of bacterial chromosome replication, segregation, and cell division, and we discuss the contribution of biomolecular condensates to bacterial cell fitness and adaptation to environmental stress.
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Affiliation(s)
- Begoña Monterroso
- Department
of Structural and Chemical Biology, Centro de Investigaciones Biológicas
Margarita Salas, Consejo Superior de Investigaciones
Científicas (CSIC), 28040 Madrid, Spain
| | - William Margolin
- Department
of Microbiology and Molecular Genetics, McGovern Medical School, UTHealth-Houston, Houston, Texas 77030, United States
| | - Arnold J. Boersma
- Cellular
Protein Chemistry, Bijvoet Centre for Biomolecular Research, Faculty
of Science, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
| | - Germán Rivas
- Department
of Structural and Chemical Biology, Centro de Investigaciones Biológicas
Margarita Salas, Consejo Superior de Investigaciones
Científicas (CSIC), 28040 Madrid, Spain
| | - Bert Poolman
- Department
of Biochemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Silvia Zorrilla
- Department
of Structural and Chemical Biology, Centro de Investigaciones Biológicas
Margarita Salas, Consejo Superior de Investigaciones
Científicas (CSIC), 28040 Madrid, Spain
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10
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Miao N, Duan Z, Wang S, Cui Y, Feng S, Wang J. h-MBenes: Promising Two-Dimensional Material Family for Room-Temperature Antiferromagnetic and Hydrogen Evolution Reaction Applications. ACS APPLIED MATERIALS & INTERFACES 2024; 16:5792-5802. [PMID: 38265992 DOI: 10.1021/acsami.3c15360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2024]
Abstract
Recently, a new class of two-dimensional (2D) hexagonal transition-metal borides (h-MBenes) was discovered through a combination of ab initio predictions and experimental studies. These h-MBenes are derived from ternary hexagonal MAB (h-MAB) phases and have demonstrated promising potential for practical applications. In this study, we conducted first-principles calculations on 15 h-MBenes and identified four antiferromagnetic metals and 11 electrocatalysts for the hydrogen evolution reaction (HER). Notably, the h-MnB material exhibited a remarkable Néel temperature of 340 K and a high magnetic anisotropy energy of 154 μeV/atom. Additionally, the hydrogen adsorption Gibbs free energies (ΔGH*) for h-ZrBO, h-MoBO, and h-Nb2BO2 are close to the ideal value of 0 eV, indicating their potential as electrochemical catalysts for HER. Further investigations revealed that the electronic structure, Néel temperature, and HER activity of the studied h-MBenes can be tuned by applying biaxial strains. These findings suggest that h-MBenes have wide-ranging applicability in areas such as antiferromagnetic spintronics, flexible electronic devices, and electrocatalysis, thereby expanding the potential applications of 2D transition-metal borides.
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Affiliation(s)
- Nanxi Miao
- State Key Laboratory of Solidification Processing, School of Materials Science and Engineering, Northwestern Polytechnical University, Xi'an, Shaanxi 710072, People's Republic of China
| | - Zhiyao Duan
- State Key Laboratory of Solidification Processing, School of Materials Science and Engineering, Northwestern Polytechnical University, Xi'an, Shaanxi 710072, People's Republic of China
| | - Shiyao Wang
- State Key Laboratory of Solidification Processing, School of Materials Science and Engineering, Northwestern Polytechnical University, Xi'an, Shaanxi 710072, People's Republic of China
| | - Yanjie Cui
- State Key Laboratory of Solidification Processing, School of Materials Science and Engineering, Northwestern Polytechnical University, Xi'an, Shaanxi 710072, People's Republic of China
| | - Shuang Feng
- State Key Laboratory of Solidification Processing, School of Materials Science and Engineering, Northwestern Polytechnical University, Xi'an, Shaanxi 710072, People's Republic of China
| | - Junjie Wang
- State Key Laboratory of Solidification Processing, School of Materials Science and Engineering, Northwestern Polytechnical University, Xi'an, Shaanxi 710072, People's Republic of China
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11
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Devlin SW, Bernal F, Riffe EJ, Wilson KR, Saykally RJ. Spiers Memorial Lecture: Water at interfaces. Faraday Discuss 2024; 249:9-37. [PMID: 37795954 DOI: 10.1039/d3fd00147d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/06/2023]
Abstract
In this article we discuss current issues in the context of the four chosen subtopics for the meeting: dynamics and nano-rheology of interfacial water, electrified/charged aqueous interfaces, ice interfaces, and soft matter/water interfaces. We emphasize current advances in both theory and experiment, as well as important practical manifestations and areas of unresolved controversy.
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Affiliation(s)
- Shane W Devlin
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
- Chemical Sciences Division, Lawrence Berkeley National Lab, Berkeley, CA 94720, USA
| | - Franky Bernal
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
- Chemical Sciences Division, Lawrence Berkeley National Lab, Berkeley, CA 94720, USA
| | - Erika J Riffe
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
- Chemical Sciences Division, Lawrence Berkeley National Lab, Berkeley, CA 94720, USA
| | - Kevin R Wilson
- Chemical Sciences Division, Lawrence Berkeley National Lab, Berkeley, CA 94720, USA
| | - Richard J Saykally
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
- Chemical Sciences Division, Lawrence Berkeley National Lab, Berkeley, CA 94720, USA
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12
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Raciti D, Cockayne E, Vinson J, Schwarz K, Walker ARH, Moffat TP. SHINERS Study of Chloride Order-Disorder Phase Transition and Solvation of Cu(100). J Am Chem Soc 2024; 146:1588-1602. [PMID: 38170994 PMCID: PMC11521106 DOI: 10.1021/jacs.3c11812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
Shell-isolated nanoparticle enhanced Raman spectroscopy (SHINERS) and density functional theory (DFT) are used to probe Cl- adsorption and the order-disorder phase transition associated with the c(2 × 2) Cl- adlayer on Cu(100) in acid media. A two-component ν(Cu-Cl) vibrational band centered near 260 ± 1 cm-1 is used to track the potential dependence of Cl- adsorption. The potential dependence of the dominant 260 cm-1 component tracks the coverage of the fluctional c(2 × 2) Cl- phase on terraces in good agreement with the normalized intensity of the c(2 × 2) superstructure rods in prior surface X-ray diffraction (SXRD) studies. As the c(2 × 2) Cl- coverage approaches saturation, a second ν(Cu-Cl) component mode emerges between 290 and 300 cm-1 that coincides with the onset and stiffening of step faceting where Cl- occupies the threefold hollow sites to stabilize the metal kink saturated Cu <100> step edge. The formation of the c(2 × 2) Cl- adlayer is accompanied by the strengthening of ν(O-H) stretching modes in the adjacent non-hydrogen-bonded water at 3600 cm-1 and an increase in hydronium concentration evident in the flanking H2O modes at 3100 cm-1. The polarization of the water molecules and enrichment of hydronium arise from the combination of Cl- anionic character and lateral templating provided by the c(2 × 2) adlayer, consistent with SXRD studies. At negative potentials, Cl- desorption occurs followed by development of a sulfate νs(S═O) band. Below -1.1 V vs Hg/HgSO4, a new 200 cm-1 mode emerges congruent with hydride formation and surface reconstruction reported in electrochemical scanning tunneling microscopy studies.
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Affiliation(s)
- David Raciti
- Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
| | - Eric Cockayne
- Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
| | - John Vinson
- Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
| | - Kathleen Schwarz
- Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
| | | | - Thomas P. Moffat
- Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
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13
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Becker M, Loche P, Rezaei M, Wolde-Kidan A, Uematsu Y, Netz RR, Bonthuis DJ. Multiscale Modeling of Aqueous Electric Double Layers. Chem Rev 2024; 124:1-26. [PMID: 38118062 PMCID: PMC10785765 DOI: 10.1021/acs.chemrev.3c00307] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2023] [Revised: 11/17/2023] [Accepted: 11/30/2023] [Indexed: 12/22/2023]
Abstract
From the stability of colloidal suspensions to the charging of electrodes, electric double layers play a pivotal role in aqueous systems. The interactions between interfaces, water molecules, ions and other solutes making up the electrical double layer span length scales from Ångströms to micrometers and are notoriously complex. Therefore, explaining experimental observations in terms of the double layer's molecular structure has been a long-standing challenge in physical chemistry, yet recent advances in simulations techniques and computational power have led to tremendous progress. In particular, the past decades have seen the development of a multiscale theoretical framework based on the combination of quantum density functional theory, force-field based simulations and continuum theory. In this Review, we discuss these theoretical developments and make quantitative comparisons to experimental results from, among other techniques, sum-frequency generation, atomic-force microscopy, and electrokinetics. Starting from the vapor/water interface, we treat a range of qualitatively different types of surfaces, varying from soft to solid, from hydrophilic to hydrophobic, and from charged to uncharged.
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Affiliation(s)
| | - Philip Loche
- Fachbereich
Physik, Freie Universität Berlin, 14195 Berlin, Germany
- Laboratory
of Computational Science and Modeling, IMX, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Majid Rezaei
- Fachbereich
Physik, Freie Universität Berlin, 14195 Berlin, Germany
- Institute
of Theoretical Chemistry, Ulm University, 89081 Ulm, Germany
| | | | - Yuki Uematsu
- Department
of Physics and Information Technology, Kyushu
Institute of Technology, 820-8502 Iizuka, Japan
- PRESTO,
Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan
| | - Roland R. Netz
- Fachbereich
Physik, Freie Universität Berlin, 14195 Berlin, Germany
| | - Douwe Jan Bonthuis
- Institute
of Theoretical and Computational Physics, Graz University of Technology, 8010 Graz, Austria
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14
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Ryan MJ, Yang N, Kwac K, Wilhelm KB, Chi BK, Weix DJ, Cho M, Zanni MT. The hydrogen-bonding dynamics of water to a nitrile-functionalized electrode is modulated by voltage according to ultrafast 2D IR spectroscopy. Proc Natl Acad Sci U S A 2023; 120:e2314998120. [PMID: 38127983 PMCID: PMC10756189 DOI: 10.1073/pnas.2314998120] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 11/15/2023] [Indexed: 12/23/2023] Open
Abstract
We report the hydrogen-bonding dynamics of water to a nitrile-functionalized and plasmonic electrode surface as a function of applied voltage. The surface-enhanced two-dimensional infrared spectra exhibit hydrogen-bonded and non-hydrogen-bonded nitrile features in similar proportions, plus cross peaks between the two. Isotopic dilution experiments show that the cross peaks arise predominantly from chemical exchange between hydrogen-bonded and non-hydrogen-bonded nitriles. The chemical exchange rate depends upon voltage, with the hydrogen bond of the water to the nitriles breaking 2 to 3 times slower (>63 vs. 25 ps) under a positive as compared to a negative potential. Spectral diffusion created by hydrogen-bond fluctuations occurs on a ~1 ps timescale and is moderately potential-dependent. Timescales from molecular dynamics simulations agree qualitatively with the experiment and show that a negative voltage causes a small net displacement of water away from the surface. These results show that the voltage applied to an electrode can alter the timescales of solvent motion at its interface, which has implications for electrochemically driven reactions.
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Affiliation(s)
- Matthew J. Ryan
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI53706
| | - Nan Yang
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI53706
| | - Kijeong Kwac
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul02841, Republic of Korea
- Department of Chemistry, Korea University, Seoul02841, Republic of Korea
| | - Kiera B. Wilhelm
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI53706
| | - Benjamin K. Chi
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI53706
| | - Daniel J. Weix
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI53706
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul02841, Republic of Korea
- Department of Chemistry, Korea University, Seoul02841, Republic of Korea
| | - Martin T. Zanni
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI53706
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15
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Islam SMR, Khezeli F, Ringe S, Plaisance C. An implicit electrolyte model for plane wave density functional theory exhibiting nonlinear response and a nonlocal cavity definition. J Chem Phys 2023; 159:234117. [PMID: 38112507 DOI: 10.1063/5.0176308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Accepted: 11/15/2023] [Indexed: 12/21/2023] Open
Abstract
We have developed and implemented an implicit electrolyte model in the Vienna Ab initio Simulation Package (VASP) that includes nonlinear dielectric and ionic responses as well as a nonlocal definition of the cavities defining the spatial regions where these responses can occur. The implementation into the existing VASPsol code is numerically efficient and exhibits robust convergence, requiring computational effort only slightly higher than the original linear polarizable continuum model. The nonlinear + nonlocal model is able to reproduce the characteristic "double hump" shape observed experimentally for the differential capacitance of an electrified metal interface while preventing "leakage" of the electrolyte into regions of space too small to contain a single water molecule or solvated ion. The model also gives a reasonable prediction of molecular solvation free energies as well as the self-ionization free energy of water and the absolute electron chemical potential of the standard hydrogen electrode. All of this, combined with the additional ability to run constant potential density functional theory calculations, should enable the routine computation of activation barriers for electrocatalytic processes.
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Affiliation(s)
- S M Rezwanul Islam
- Department of Chemical Engineering, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | - Foroogh Khezeli
- Department of Chemical Engineering, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | - Stefan Ringe
- Department of Chemistry, Korea University, Seoul 02841, Republic of Korea
| | - Craig Plaisance
- Department of Chemical Engineering, Louisiana State University, Baton Rouge, Louisiana 70803, USA
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16
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Yu S, Levell Z, Jiang Z, Zhao X, Liu Y. What Is the Rate-Limiting Step of Oxygen Reduction Reaction on Fe-N-C Catalysts? J Am Chem Soc 2023; 145:25352-25356. [PMID: 37955970 DOI: 10.1021/jacs.3c09193] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
Abstract
Oxygen reduction reaction (ORR) is essential to various renewable energy technologies. An important catalyst for ORR is single iron atoms embedded in nitrogen-doped graphene (Fe-N-C). However, the rate-limiting step of the ORR on Fe-N-C is unknown, significantly impeding understanding and improvement. Here, we report the activation energies of all of the steps, calculated by ab initio molecular dynamics simulations under constant electrode potential. In contrast to the common belief that a hydrogenation step limits the reaction rate, we find that the rate-limiting step is oxygen molecule replacing adsorbed water on Fe. This occurs through concerted motion of H2O desorption and O2 adsorption, without leaving the site bare. Interestingly, despite being an apparent "thermal" process that is often considered to be potential-independent, the barrier reduces with the electrode potential. This can be explained by stronger Fe-O2 binding and weaker Fe-H2O binding at a lower potential, due to O2 gaining electrons and H2O donating electrons to the catalyst. Our study offers new insights into the ORR on Fe-N-C and highlights the importance of kinetic studies in heterogeneous electrochemistry.
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Affiliation(s)
- Saerom Yu
- Texas Materials Institute and Department of Mechanical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Zachary Levell
- Texas Materials Institute and Department of Mechanical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Zhou Jiang
- Texas Materials Institute and Department of Mechanical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Xunhua Zhao
- Texas Materials Institute and Department of Mechanical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Yuanyue Liu
- Texas Materials Institute and Department of Mechanical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States
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17
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Sun F, Qin L, Tang Z, Deng G, Bootharaju MS, Wei Z, Tang Q, Hyeon T. -SR removal or -R removal? A mechanistic revisit on the puzzle of ligand etching of Au 25(SR) 18 nanoclusters during electrocatalysis. Chem Sci 2023; 14:10532-10546. [PMID: 37800008 PMCID: PMC10548520 DOI: 10.1039/d3sc03018k] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Accepted: 09/09/2023] [Indexed: 10/07/2023] Open
Abstract
Accurate identification of active sites is highly desirable for elucidation of the reaction mechanism and development of efficient catalysts. Despite the promising catalytic performance of thiolated metal nanoclusters (NCs), their actual catalytic sites remain elusive. Traditional first-principles calculations and experimental observations suggested dealkylated S and dethiolated metal, respectively, to be the active centers. However, the real kinetic origin of thiolate etching during the electrocatalysis of NCs is still puzzling. Herein, we conducted advanced first-principles calculations and electrochemical/spectroscopic experiments to unravel the electrochemical etching kinetics of thiolate ligands in prototype Au25(SCH3)18 NC. The electrochemical processes are revealed to be spontaneously facilitated by dethiolation (i.e., desorption of -SCH3), forming the free HSCH3 molecule after explicitly including the solvent effect and electrode potential. Thus, exposed under-coordinated Au atoms, rather than the S atoms, serve as the real catalytic sites. The thermodynamically preferred Au-S bond cleavage arises from the selective attack of H from proton/H2O on the S atom under suitable electrochemical bias due to the spatial accessibility and the presence of S lone pair electrons. Decrease of reduction potential promotes the proton attack on S and significantly accelerates the kinetics of Au-S bond breakage irrespective of the pH of the medium. Our theoretical results are further verified by the experimental electrochemical and spectroscopic data. At more negative electrode potentials, the number of -SR ligands decreased with concomitant increase of the vibrational intensity of S-H bonds. These findings together clarify the atomic-level activation mechanism on the surface of Au25(SR)18 NCs.
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Affiliation(s)
- Fang Sun
- School of Chemistry and Chemical Engineering, Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University Chongqing 401331 China
| | - Lubing Qin
- New Energy Research Institute, School of Environment and Energy, South China University of Technology, Guangzhou Higher Education Mega Center Guangzhou 510006 China
| | - Zhenghua Tang
- New Energy Research Institute, School of Environment and Energy, South China University of Technology, Guangzhou Higher Education Mega Center Guangzhou 510006 China
| | - Guocheng Deng
- Center for Nanoparticle Research, Institute for Basic Science (IBS) Seoul 08826 Republic of Korea
- School of Chemical and Biological Engineering, Institute of Chemical Processes, Seoul National University Seoul 08826 Republic of Korea
| | - Megalamane S Bootharaju
- Center for Nanoparticle Research, Institute for Basic Science (IBS) Seoul 08826 Republic of Korea
- School of Chemical and Biological Engineering, Institute of Chemical Processes, Seoul National University Seoul 08826 Republic of Korea
| | - Zidong Wei
- School of Chemistry and Chemical Engineering, Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University Chongqing 401331 China
| | - Qing Tang
- School of Chemistry and Chemical Engineering, Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University Chongqing 401331 China
| | - Taeghwan Hyeon
- Center for Nanoparticle Research, Institute for Basic Science (IBS) Seoul 08826 Republic of Korea
- School of Chemical and Biological Engineering, Institute of Chemical Processes, Seoul National University Seoul 08826 Republic of Korea
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18
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Liu S, Mukadam Z, Scott SB, Sarma SC, Titirici MM, Chan K, Govindarajan N, Stephens IEL, Kastlunger G. Unraveling the reaction mechanisms for furfural electroreduction on copper. EES CATALYSIS 2023; 1:539-551. [PMID: 37426696 PMCID: PMC10323714 DOI: 10.1039/d3ey00040k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 04/27/2023] [Indexed: 07/11/2023]
Abstract
Electrochemical routes for the valorization of biomass-derived feedstock molecules offer sustainable pathways to produce chemicals and fuels. However, the underlying reaction mechanisms for their electrochemical conversion remain elusive. In particular, the exact role of proton-electron coupled transfer and electrocatalytic hydrogenation in the reaction mechanisms for biomass electroreduction are disputed. In this work, we study the reaction mechanism underlying the electroreduction of furfural, an important biomass-derived platform chemical, combining grand-canonical (constant-potential) density functional theory-based microkinetic simulations and pH dependent experiments on Cu under acidic conditions. Our simulations indicate the second PCET step in the reaction pathway to be the rate- and selectivity-determining step for the production of the two main products of furfural electroreduction on Cu, i.e., furfuryl alcohol and 2-methyl furan, at moderate overpotentials. We further identify the source of Cu's ability to produce both products with comparable activity in their nearly equal activation energies. Furthermore, our microkinetic simulations suggest that surface hydrogenation steps play a minor role in determining the overall activity of furfural electroreduction compared to PCET steps due to the low steady-state hydrogen coverage predicted under reaction conditions, the high activation barriers for surface hydrogenation and the observed pH dependence of the reaction. As a theoretical guideline, low pH (<1.5) and moderate potential (ca. -0.5 V vs. SHE) conditions are suggested for selective 2-MF production.
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Affiliation(s)
- Sihang Liu
- Department of Physics, Catalysis Theory Center, Technical University of Denmark (DTU) 2800 Kgs. Lyngby Denmark
| | - Zamaan Mukadam
- Department of Materials, Royal School of Mines, Imperial College London London SW27 AZ England UK
| | - Soren B Scott
- Department of Materials, Royal School of Mines, Imperial College London London SW27 AZ England UK
| | - Saurav Ch Sarma
- Department of Chemical Engineering, Imperial College London London SW7 2AZ England UK
| | - Maria-Magdalena Titirici
- Department of Chemical Engineering, Imperial College London London SW7 2AZ England UK
- Advanced Institute for Materials Research (WPI-AIMR), Tohoku University Sendai Miyagi 980-8577 Japan
| | - Karen Chan
- Department of Physics, Catalysis Theory Center, Technical University of Denmark (DTU) 2800 Kgs. Lyngby Denmark
| | - Nitish Govindarajan
- Department of Physics, Catalysis Theory Center, Technical University of Denmark (DTU) 2800 Kgs. Lyngby Denmark
- Materials Science Division, Lawrence Livermore National Laboratory Livermore California 94550 USA
| | - Ifan E L Stephens
- Department of Materials, Royal School of Mines, Imperial College London London SW27 AZ England UK
| | - Georg Kastlunger
- Department of Physics, Catalysis Theory Center, Technical University of Denmark (DTU) 2800 Kgs. Lyngby Denmark
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19
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Xia Z, Xiao H. Grand Canonical Ensemble Modeling of Electrochemical Interfaces Made Simple. J Chem Theory Comput 2023. [PMID: 37399292 DOI: 10.1021/acs.jctc.3c00237] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/05/2023]
Abstract
Grand canonical ensemble (GCE) modeling of electrochemical interfaces, in which the electrochemical potential is converged to a preset constant, is essential for understanding electrochemistry and electrocatalysis at the electrodes. However, it requires developing efficient and robust algorithms to perform practical and effective GCE modeling with density functional theory (DFT) calculations. Herein, we developed an efficient and robust fully converged constant-potential (FCP) algorithm based on Newton's method and a polynomial fitting to calculate the necessary derivative for DFT calculations. We demonstrated with the constant-potential geometry optimization and Born-Oppenheimer molecular dynamics (BOMD) calculations that our FCP algorithm is resistant to the numerical instability that plagues other algorithms, and it delivers efficient convergence to the preset electrochemical potential and renders accurate forces for updating the nuclear positions of an electronically open system, outperforming other algorithms. The implementation of our FCP algorithm enables flexibility in using various computational codes and versatility in performing advanced tasks including the constant-potential enhanced-sampling BOMD simulations that we showcased with the modeling of the electrochemical hydrogenation of CO, and it is thus expected to find a wide spectrum of applications in the modeling of chemistry at electrochemical interfaces.
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Affiliation(s)
- Zhaoming Xia
- Department of Chemistry, Tsinghua University, Beijing 100084, China
- Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China
| | - Hai Xiao
- Department of Chemistry, Tsinghua University, Beijing 100084, China
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20
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Woodcox M, Mahata A, Hagerstrom A, Stelson A, Muzny C, Sundararaman R, Schwarz K. Simulating dielectric spectra: A demonstration of the direct electric field method and a new model for the nonlinear dielectric response. J Chem Phys 2023; 158:124122. [PMID: 37003751 DOI: 10.1063/5.0143425] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023] Open
Abstract
We demonstrate a method to compute the dielectric spectra of fluids in molecular dynamics (MD) by directly applying electric fields to the simulation. We obtain spectra from MD simulations with low magnitude electric fields (≈0.01 V/Å) in agreement with spectra from the fluctuation-dissipation method for water and acetonitrile. We examine this method's trade-off between noise at low field magnitudes and the nonlinearity of the response at higher field magnitudes. We then apply the Booth equation to describe the nonlinear response of both fluids at low frequency (0.1 GHz) and high field magnitude (up to 0.5 V/Å). We develop a model of the frequency-dependent nonlinear response by combining the Booth description of the static nonlinear dielectric response of fluids with the frequency-dependent linear dielectric response of the Debye model. We find good agreement between our model and the MD simulations of the nonlinear dielectric response for both acetonitrile and water.
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Affiliation(s)
- Michael Woodcox
- Theiss Research, P. O. Box 127, La Jolla, California 92038, USA
| | - Avik Mahata
- Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Dr., Gaithersburg, Maryland 20899, USA
| | - Aaron Hagerstrom
- Communications Technology Laboratory, National Institute of Standards and Technology, 325 Broadway, Boulder, Colorado 80305, USA
| | - Angela Stelson
- Communications Technology Laboratory, National Institute of Standards and Technology, 325 Broadway, Boulder, Colorado 80305, USA
| | - Chris Muzny
- Material Measurement Laboratory, National Institute of Standards and Technology, 325 Broadway, Boulder, Colorado 80305, USA
| | - Ravishankar Sundararaman
- Department of Materials Science and Engineering, Rensselaer Polytechnic Institute, 110 8th St., Troy, New York 12180, USA
| | - Kathleen Schwarz
- Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Dr., Gaithersburg, Maryland 20899, USA
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21
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Li X, Xu G, Xia M, Liu X, Fan F, Dou J. Research on the remediation of cesium pollution by adsorption: Insights from bibliometric analysis. CHEMOSPHERE 2022; 308:136445. [PMID: 36113663 DOI: 10.1016/j.chemosphere.2022.136445] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Revised: 09/06/2022] [Accepted: 09/10/2022] [Indexed: 06/15/2023]
Abstract
While nuclear energy with zero carbon emissions will continue to occupy an indispensable position in future scenarios for power generation, the proper disposal of nuclear waste is still highly challenging in many countries. Adsorption is currently one of the primary methods used for removal of cesium from wastewater. However, no available literature has systematically summarized advances and outlooks on the adsorptive removal of cesium, and research issues such as relevant adsorption mechanisms remain largely unexplored. In this study, a bibliometric analysis was used to quantitatively analyze 10141 publications in the Web of Science Core Collection that were published from 1900 to 2022. Current publication trends and active countries, most influential authors and institutions, journal distribution, and research hotspots and trends were reviewed and summarized. The results for the conceptual structure and evolution of investigations in this field showed three distinct periods of rapid development in recent decades. The first period concerned the scope, degree, and influences of pollution by cesium and the development of natural adsorbents. The second period included the exploration and verification of adsorption mechanisms, the fabrication and optimization of new materials, and the application of density functional theory for chemical calculations. The third period involved the development of more advanced biodegradable, nanoscale and synthetic materials with great potential for use as adsorbents as well as advances in engineering applications. Notably, the study showed that it is necessary to further enhance application-driven laboratory investigations. Future directions for research were proposed, such as the investigation of complex adsorption mechanisms, development of new materials, and engineering applications of materials developed in the laboratory. The findings will provide valuable insights and serve as a reference for researchers and policymakers as they address the adsorptive remediation of cases of pollution by cesium.
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Affiliation(s)
- Xindai Li
- College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China; Beijing Key Laboratory of Urban Hydrological Cycle and Sponge City Technology, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Guangming Xu
- College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China; Beijing Key Laboratory of Urban Hydrological Cycle and Sponge City Technology, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Meng Xia
- College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Xinyao Liu
- College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Fuqiang Fan
- Advanced Institute of Natural Sciences, Beijing Normal University at Zhuhai, Zhuhai, 519087, PR China.
| | - Junfeng Dou
- College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China; Beijing Key Laboratory of Urban Hydrological Cycle and Sponge City Technology, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China.
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22
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Langford L, Winner N, Hwang A, Williams H, Vergari L, Scarlat RO, Asta M. Constant-Potential Molecular Dynamics Simulations of Molten-Salt Double Layers for FLiBe and FLiNaK. J Chem Phys 2022; 157:094705. [DOI: 10.1063/5.0097697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We report the results of constant-potential molecular dynamics simulations of the double- layer interface between molten FLiBe and FLiNaK fluoride mixtures and idealized solid electrodes. Employing methods similar to those used in studies of chloride double layers, we compute the structure and differential capacitance of molten fluoride electric double layers as a function of applied voltage. The role of molten salt structure is probed through comparisons between FLiBe and FLiNaK, which serve as models for strong and weak associate- forming salts, respectively. In FLiBe, screening involves changes in Be-F-Be angles and alignment of the oligomers parallel to the electrode, while in FLiNaK the electric field is screened mainly by rearrangement of individual ions, predominantly the polarizable potassium cation.
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Affiliation(s)
- Luke Langford
- Materials Science and Engineering, University of California Berkeley, United States of America
| | | | - Andrea Hwang
- University of California Berkeley, United States of America
| | - Haley Williams
- University of California Berkeley, United States of America
| | - Lorenzo Vergari
- Nuclear Engineering, University of California Berkeley, United States of America
| | | | - Mark Asta
- Department of Materials Science and Engineering, University of California Berkeley, United States of America
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23
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Sun F, Tang Q, Jiang DE. Theoretical Advances in Understanding and Designing the Active Sites for Hydrogen Evolution Reaction. ACS Catal 2022. [DOI: 10.1021/acscatal.2c02081] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Fang Sun
- School of Chemistry and Chemical Engineering, Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University, Chongqing 401331, China
| | - Qing Tang
- School of Chemistry and Chemical Engineering, Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University, Chongqing 401331, China
| | - De-en Jiang
- Department of Chemistry, University of California, Riverside, California 92521, United States
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