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Zhang Y, Yue S, Gao Y, Zhao P, Liu M, Qiao Y, Xu S, Gu R, Zhang X, Zhou Y. Insights into response of seagrass (Zostera marina) to sulfide exposure at morphological, physiochemical and molecular levels in context of coastal eutrophication and warming. PLANT, CELL & ENVIRONMENT 2024. [PMID: 39076032 DOI: 10.1111/pce.15048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2024] [Accepted: 06/28/2024] [Indexed: 07/31/2024]
Abstract
Sulfide in sediment porewaters, is toxic to rooted macrophytes in both marine and freshwater environments. Current research on sulfide stress in seagrasses primarily focuses on morphological and physiological aspects, with little known about the molecular response and resistance mechanisms. This study first investigated the damage caused by sulfide to eelgrass (Zostera marina L.) using transcriptomic, metabolomic, and other physiological and biochemical indicators and explored the potential resistance of eelgrass at molecular level through laboratory simulated and in-situ sulfide stress experiments. Comprehensive results showed that sulfide stress severely inhibited the growth, photosynthesis, and antioxidant enzyme activities of eelgrass. Importantly, transcriptome analysis revealed significant activation of pathways related to carbohydrate and sulfur metabolism. This activation served a dual purpose: providing an energy source for eelgrass stress response and achieving detoxification through accelerated sulfur metabolism-a potential resistance mechanism. The toxicity of sulfide increased with rising temperature as evidenced by a decrease in EC50. Results from recovery experiments indicated that when Fv/Fm reduced to about 0 under sulfide stress, the growth and photosynthesis of eelgrass recovered to normal level after timely removal of sulfide. However, prolonged exposure to sulfide resulted in failure to recover, leading ultimately to plant death. This study not only enhances our understanding of the molecular-level impacts of sulfide on seagrasses but also provides guidance for the management and ecological restoration of seagrass meadows under sulfide stress.
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Affiliation(s)
- Yu Zhang
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao Marine Science and Technology Center, Qingdao, China
- Field Scientific Observation and Research Station of Yellow-Bohai Sea Temperate Seagrass Bed Ecosystems, Ministry of Natural Resources, Qingdao, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- University of Chinese Academy of Sciences, Beijing, China
- Shandong Province Key Laboratory of Experimental Marine Biology, Qingdao, China
| | - Shidong Yue
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao Marine Science and Technology Center, Qingdao, China
- Field Scientific Observation and Research Station of Yellow-Bohai Sea Temperate Seagrass Bed Ecosystems, Ministry of Natural Resources, Qingdao, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- University of Chinese Academy of Sciences, Beijing, China
- Shandong Province Key Laboratory of Experimental Marine Biology, Qingdao, China
| | - Yaping Gao
- Key Laboratory of Sustainable Development of Marine Fisheries, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China
| | - Peng Zhao
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, China
| | - Mingjie Liu
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao Marine Science and Technology Center, Qingdao, China
- Field Scientific Observation and Research Station of Yellow-Bohai Sea Temperate Seagrass Bed Ecosystems, Ministry of Natural Resources, Qingdao, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- University of Chinese Academy of Sciences, Beijing, China
- Shandong Province Key Laboratory of Experimental Marine Biology, Qingdao, China
| | - Yongliang Qiao
- Qingdao University of Science and Technology, Qingdao, China
| | - Shaochun Xu
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao Marine Science and Technology Center, Qingdao, China
- Field Scientific Observation and Research Station of Yellow-Bohai Sea Temperate Seagrass Bed Ecosystems, Ministry of Natural Resources, Qingdao, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- University of Chinese Academy of Sciences, Beijing, China
- Shandong Province Key Laboratory of Experimental Marine Biology, Qingdao, China
| | - Ruiting Gu
- East China Normal University, Shanghai, China
| | - Xiaomei Zhang
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao Marine Science and Technology Center, Qingdao, China
- Field Scientific Observation and Research Station of Yellow-Bohai Sea Temperate Seagrass Bed Ecosystems, Ministry of Natural Resources, Qingdao, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- University of Chinese Academy of Sciences, Beijing, China
- Shandong Province Key Laboratory of Experimental Marine Biology, Qingdao, China
| | - Yi Zhou
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao Marine Science and Technology Center, Qingdao, China
- Field Scientific Observation and Research Station of Yellow-Bohai Sea Temperate Seagrass Bed Ecosystems, Ministry of Natural Resources, Qingdao, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- University of Chinese Academy of Sciences, Beijing, China
- Shandong Province Key Laboratory of Experimental Marine Biology, Qingdao, China
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Yan W, Wang Z, Pei Y, Zhou B. Adaptive responses of eelgrass (Zostera marina L.) to ocean warming and acidification. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 206:108257. [PMID: 38064900 DOI: 10.1016/j.plaphy.2023.108257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Revised: 11/12/2023] [Accepted: 11/30/2023] [Indexed: 02/15/2024]
Abstract
Ocean warming (OW) and ocean acidification (OA), driven by rapid global warming accelerating at unprecedented rates, are profoundly impacting the stability of seagrass ecosystems. Yet, our current understanding of the effects of OW and OA on seagrass remains constrained. Herein, we investigated the response of eelgrass (Zostera marina L.), a representative seagrass species, to OW and OA through comprehensive transcriptomic and metabolomic analyses. The results showed notable variations in plant performance under varying conditions: OW, OA, and OWA (a combination of both conditions). Specifically, under average oceanic temperature conditions for eelgrass growth over the past 20 years -from May to November-OA promoted the production of differentially expressed genes and metabolites associated with alanine, aspartate, and glutamate metabolism, as well as starch and sucrose metabolism. Under warming condition, eelgrass was resistant to OA by accelerating galactose metabolism, along with glycine, serine, and threonine metabolism, as well as the tricarboxylic acid (TCA) cycle. Under the combined OW and OA condition, eelgrass stimulated fructose and mannose metabolism, glycolysis, and carbon fixation, in addition to galactose metabolism and the TCA cycle to face the interplay. Our findings suggest that eelgrass exhibits adaptive capacity by inducing different metabolites and associated genes, primarily connected with carbon and nitrogen metabolism, in response to varying degrees of OW and OA. The data generated here support the exploration of mechanisms underlying seagrass responses to environmental fluctuations, which hold critical significance for the future conservation and management of these ecosystems.
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Affiliation(s)
- Wenjie Yan
- Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao, 266003, China.
| | - Zhaohua Wang
- First Institute of Oceanography, MNR, Qingdao, 266061, China
| | - Yanzhao Pei
- College of Marine Life Science, Ocean University of China, Qingdao, 266003, China
| | - Bin Zhou
- College of Marine Life Science, Ocean University of China, Qingdao, 266003, China.
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Hasler-Sheetal H. Detrimental impact of sulfide on the seagrass Zostera marina in dark hypoxia. PLoS One 2023; 18:e0295450. [PMID: 38060512 PMCID: PMC10703230 DOI: 10.1371/journal.pone.0295450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 11/21/2023] [Indexed: 12/18/2023] Open
Abstract
Sulfide poisoning, hypoxia events, and reduced light availability pose threats to marine ecosystems such as seagrass meadows. These threats are projected to intensify globally, largely due to accelerating eutrophication of estuaries and coastal environments. Despite the urgency, our current comprehension of the metabolic pathways that underlie the deleterious effects of sulfide toxicity and hypoxia on seagrasses remains inadequate. To address this knowledge gap, I conducted metabolomic analyses to investigate the impact of sulfide poisoning under dark-hypoxia in vitro conditions on Zostera marina, a vital habitat-forming marine plant. During the initial 45 minutes of dark-hypoxia exposure, I detected an acclimation phase characterized by the activation of anaerobic metabolic pathways and specific biochemical routes that mitigated hypoxia and sulfide toxicity. These pathways served to offset energy imbalances, cytosolic acidosis, and sulfide toxicity. Notably, one such route facilitated the transformation of toxic sulfide into non-toxic organic sulfur compounds, including cysteine and glutathione. However, this sulfide tolerance mechanism exhibited exhaustion post the initial 45-minute acclimation phase. Consequently, after 60 minutes of continuous sulfide exposure, the sulfide toxicity began to inhibit the hypoxia-mitigating pathways, culminating in leaf senescence and tissue degradation. Utilizing metabolomic approaches, I elucidated the intricate metabolic responses of seagrasses to sulfide toxicity under in vitro dark-hypoxic conditions. My findings suggest that future increases in coastal eutrophication will compromise the resilience of seagrass ecosystems to hypoxia, primarily due to the exacerbating influence of sulfide.
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Affiliation(s)
- Harald Hasler-Sheetal
- Nordcee, University of Southern Denmark, Odense M, Denmark
- VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Odense M, Denmark
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Wang F, Guo R, Zhang N, Yang S, Cao W. Soil organic carbon storages and bacterial communities along a restored mangrove soil chronosequence in the Jiulong River Estuary: From tidal flats to mangrove afforestation. FUNDAMENTAL RESEARCH 2023; 3:880-889. [PMID: 38933017 PMCID: PMC11197722 DOI: 10.1016/j.fmre.2022.08.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Revised: 08/12/2022] [Accepted: 08/24/2022] [Indexed: 11/24/2022] Open
Abstract
Among many ecological services provided by mangrove ecosystems, soil organic carbon (SOC) storages have recently received much attention owing to the increasing atmospheric partial pressure of dissolved CO2 (pCO2). Bacteria are fundamental to ecosystem functions and strongly influence the coupling of coastal carbon, nitrogen, and sulfur cycling in soils. The SOC storage and bacterial communities along a restored mangrove soil chronosequence in the Jiulong River Estuary were explored using the 16S rDNA sequencing technique. The results showed the SOC storage in the 100 cm soil profile was 103.31 ± 5.87 kg C m-2 and 93.10 ± 11.28 kg C m-2 for mangroves with afforestation ages of 36 and 60 years, respectively. The total nitrogen (TN) and total sulfur (TS) contents exhibited significant correlations with the SOC in the mangrove soils, but only TN and SOC showed significant correlation in tidal flat soils. Although the tidal flats and mangroves occupied the contiguous intertidal zone within several kilometers, the variations in the SOC storage along the restored mangrove soil chronosequence were notably higher. The Functional Annotation of Prokaryotic Taxa (FAPROTAX) database was used to annotate the metabolic functions of the bacteria in the soils. The annotation revealed that only four metabolic functions were enriched with a higher relative abundance of the corresponding bacteria, and these enriched functions were largely associated with sulfate reduction. In addition, the specifically critical bacterial taxa that were associated with the SOC accumulation and nutrient cycling, shaped the distinct metabolic functions, and consequently facilitated the SOC accumulation in the mangrove soils with various afforestation ages. The general homogenization of the microbial community and composition along the intertidal soil chronosequence was primarily driven by the reciprocating tidal flows and geographical contiguity.
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Affiliation(s)
- Feifei Wang
- State Key Laboratory of Marine Environmental Science, Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of Environment and Ecology, Xiamen University, Xiamen, Fujian 361102, China
| | - Rui Guo
- State Key Laboratory of Marine Environmental Science, Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of Environment and Ecology, Xiamen University, Xiamen, Fujian 361102, China
| | - Ning Zhang
- State Key Laboratory of Marine Environmental Science, Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of Environment and Ecology, Xiamen University, Xiamen, Fujian 361102, China
| | - Shengchang Yang
- State Key Laboratory of Marine Environmental Science, Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of Environment and Ecology, Xiamen University, Xiamen, Fujian 361102, China
| | - Wenzhi Cao
- State Key Laboratory of Marine Environmental Science, Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of Environment and Ecology, Xiamen University, Xiamen, Fujian 361102, China
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Jiang Z, He J, Fang Y, Lin J, Liu S, Wu Y, Huang X. Effects of herbivore on seagrass, epiphyte and sediment carbon sequestration in tropical seagrass bed. MARINE ENVIRONMENTAL RESEARCH 2023; 190:106122. [PMID: 37549560 DOI: 10.1016/j.marenvres.2023.106122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Revised: 07/10/2023] [Accepted: 07/31/2023] [Indexed: 08/09/2023]
Abstract
Herbivores strongly affect the ecological structure and functioning in seagrass bed ecosystems, but may exhibit density-dependent effects on primary producers and carbon sequestration. This study examined the effects of herbivorous snail (Cerithidea rhizophorarum) density on snail intraspecific competition and diet, dominant seagrass (Thalassia hemprichii) and epiphyte growth metrics, and sediment organic carbon (SOC). The growth rates of the herbivorous snail under low density (421 ind m-2) and mid density (842 ind m-2) were almost two times of those at extremely high density (1684 ind m-2), indicating strong intraspecific competition at high density. Herbivorous snails markedly reduced the epiphyte biomass on seagrass leaves. Additionally, the seagrass contribution to herbivorous snail as food source under high density was about 1.5 times of that under low density, while the epiphyte contribution under low density was 3 times of that under high density. A moderate density of herbivorous snails enhanced leaf length, carbon, nitrogen, total phenol and flavonoid contents of seagrasses, as well as surface SOC content and activities of polyphenol oxidase and β-glucosidase. However, high density of herbivorous snails decreased leaf glucose, fructose, detritus carbon, and total phenols contents of seagrasses, as well as surface SOC content and activities of polyphenol oxidase and β-glucosidase. Therefore, the effects of herbivorous snail on seagrass, epiphyte and SOC were density-dependent, and moderate density of herbivorous snail could be beneficial for seagrasses to increase productivity. This provided theoretical guidance for enhancing carbon sink in seagrass bed and its better conservation.
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Affiliation(s)
- Zhijian Jiang
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, 511458, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China; Sanya National Marine Ecosystem Research Station, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Sanya, 572000, China; Key Laboratory of Tropical Marine Biotechnology of Hainan Province, Sanya Institute of Oceanology, South China Sea Institute of Oceanology, Sanya, 572100, China; Guangdong Provincial Key Laboratory of Marine Biology Applications, Guangzhou, 510301, China
| | - Jialu He
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China; Guangdong Center for Marine Development Research, Guangzhou, 510220, China
| | - Yang Fang
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Jizhen Lin
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Songlin Liu
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, 511458, PR China; Sanya National Marine Ecosystem Research Station, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Sanya, 572000, China; Key Laboratory of Tropical Marine Biotechnology of Hainan Province, Sanya Institute of Oceanology, South China Sea Institute of Oceanology, Sanya, 572100, China; Guangdong Provincial Key Laboratory of Marine Biology Applications, Guangzhou, 510301, China
| | - Yunchao Wu
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, 511458, PR China; Sanya National Marine Ecosystem Research Station, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Sanya, 572000, China; Key Laboratory of Tropical Marine Biotechnology of Hainan Province, Sanya Institute of Oceanology, South China Sea Institute of Oceanology, Sanya, 572100, China; Guangdong Provincial Key Laboratory of Marine Biology Applications, Guangzhou, 510301, China
| | - Xiaoping Huang
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, 511458, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China; Sanya National Marine Ecosystem Research Station, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Sanya, 572000, China; Key Laboratory of Tropical Marine Biotechnology of Hainan Province, Sanya Institute of Oceanology, South China Sea Institute of Oceanology, Sanya, 572100, China; Guangdong Provincial Key Laboratory of Marine Biology Applications, Guangzhou, 510301, China.
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Metabolomics Unravels Grazing Interactions under Nutrient Enrichment from Aquaculture. DIVERSITY 2022. [DOI: 10.3390/d15010031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Our goal was to understand the mechanisms behind the impact of nutrient enrichment at intermediate distances from aquaculture on the interactions of a subtidal macroalgae community with its main grazer, the sea urchin Paracentrotus lividus. We assessed the diversity and cover of the macroalgal community, the abundance and biometrics of the sea urchins, the carbon and nitrogen elemental and isotopic compositions, and their metabolome in two stations, at an intermediate distance (station A) and away (station B) from a fish cage facility in the Aegean Sea (Greece), during the warm and cold seasons. The nutrient input at station A favored a shift to a macroalgal assemblage dominated by turf-forming species, depleted of native-erected species and with a higher abundance of invasive algae. A stable isotope analysis showed fish-farm-associated nitrogen enrichment of the macroalgae and trophic transfer to P. lividus. A decrease in metabolites related to grazing, reproduction, and energy reserves was found in P. lividus at station A. Furthermore, the metabolomic analysis was able to pinpoint stress in P. lividus at an intermediate distance from aquaculture. The chosen combination of traditional ecology with omics technology could be used to uncover not only the sublethal effects of nutrient loading but also the pathways for species interactions.
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Huang W, Han S, Wang L, Li W. Carbon and nitrogen metabolic regulation in freshwater plant Ottelia alismoides in response to carbon limitation: A metabolite perspective. FRONTIERS IN PLANT SCIENCE 2022; 13:962622. [PMID: 36186073 PMCID: PMC9522611 DOI: 10.3389/fpls.2022.962622] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 08/15/2022] [Indexed: 06/16/2023]
Abstract
Carbon and nitrogen metabolism are basic, but pivotal metabolic pathways in plants and are tightly coupled. Maintaining the balance of carbon and nitrogen metabolism is critical for plant survival. Comprehensively revealing the metabolic balance of carbon-nitrogen interactions is important and helpful for understanding the adaptation of freshwater plants to CO2 limited aqueous environment. A comprehensive metabolomics analysis combined with physiological measurement was performed in the freshwater plant Ottelia alismoides acclimated to high and low CO2, respectively, for a better understanding of how the carbon and nitrogen metabolic adjustment in freshwater plants respond to carbon limitation. The present results showed that low CO2 acclimated O. alismoides exhibited significant diurnal titratable acidity and malate fluctuations, as well as an opposite diel pattern of starch change and high enzymatic activities required for crassulacean acid metabolism (CAM) photosynthesis, which indicates that CAM was induced under low CO2. Moreover, the metabolomic analysis showed that most intermediates of glycolysis, pentose phosphate pathway (PPP) and tricarboxylic acid (TCA) cycle, were increased under low CO2, indicative of active respiration in low-CO2-treated O. alismoides. Meanwhile, the majority of amino acids involved in pathways of glutamate and arginine metabolism, aspartate metabolism, and the branched-chain amino acids (BCAAs) metabolism were significantly increased under low CO2. Notably, γ-aminobutyric acid (GABA) level was significantly higher in low CO2 conditions, indicating a typical response with GABA shunt compensated for energy deprivation at low CO2. Taken together, we conclude that in low-CO2-stressed O. alismoides, CAM photosynthesis was induced, leading to higher carbon and nitrogen as well as energy requirements. Correspondingly, the respiration was greatly fueled via numerous starch degradation to ensure CO2 fixation in dark, while accompanied by linked promoted N metabolism, presumably to produce energy and alternative carbon sources and nitrogenous substances for supporting the operation of CAM and enhancing tolerance for carbon limitation. This study not only helps to elucidate the regulating interaction between C and N metabolism to adapt to different CO2 but also provides novel insights into the effects of CO2 variation on the metabolic profiling of O. alismoides.
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Affiliation(s)
- Wenmin Huang
- Aquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China
| | - Shijuan Han
- Aquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China
| | - Liyuan Wang
- Aquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Wei Li
- Aquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China
- Research Center for Ecology, College of Science, Tibet University, Lhasa, Tibet, China
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Jiang Z, Li L, Fang Y, Lin J, Liu S, Wu Y, Huang X. Eutrophication reduced the release of dissolved organic carbon from tropical seagrass roots through exudation and decomposition. MARINE ENVIRONMENTAL RESEARCH 2022; 179:105703. [PMID: 35853314 DOI: 10.1016/j.marenvres.2022.105703] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 06/23/2022] [Accepted: 07/10/2022] [Indexed: 06/15/2023]
Abstract
Seagrass bed ecosystem is one of the most effective carbon capture and storage systems on earth. Seagrass roots are the key link of carbon flow between leaf-root-sediment, and the release of dissolved organic carbon (DOC) from seagrass roots through exudation and decomposition are vital sources to the sediment organic carbon (SOC) in the seagrass beds. Unfortunately, human-induced eutrophication may change the release process of DOC from seagrass roots, thereby affecting the sediment carbon storage capacity. However, little is known about the effect of nutrient enrichment on the release of DOC from seagrass roots, hindering the development of seagrass underground ecology. Therefore, we selected Thalassia hemprichii, the tropical dominant seagrass species, as the research object, and made a comparison of the release of DOC from roots through exudation and decomposition under different nitrate treatments. We found that under control, 10 μmol L-1, 20 μmol L-1 and 40 μmol L-1 nitrate treatments, soluble sugar of T. hemprichii roots were 71.37 ± 3.43 mg g-1, 67.03 ± 5.33 mg g-1, 49.14 ± 3.48 mg g-1, and 18.51 ± 2.09 mg g-1, respectively, while the corresponding root DOC exudation rates were 7.00 ± 0.97 mg g DW root-1 h-1, 5.11 ± 0.42 mg g DW root-1 h-1, 4.08 ± 0.23 mg g DW root-1 h-1, and 3.78 ± 0.74 mg g DW root-1 h-1, respectively. There was a significant positive correlation between root soluble sugar and DOC exudation rate. DOC concentration of sediment porewater and SOC content also decreased under nitrate enrichment (though not significantly), which were both significantly positively correlated with the rate of root exuded DOC. Meanwhile, nitrate enrichment also reduced the release rate of DOC from seagrass roots during initial decomposition, and the release flux of DOC from decomposition. Therefore, nutrient enrichment could decrease nonstructural carbohydrates of seagrass roots, reducing the rate of root exuded DOC, thereby lowered SOC, as well as the DOC release from seagrass root decomposition. In order to increase the release of DOC from seagrass roots and improve the carbon sequestration capacity of seagrass beds, effective measures should be taken to control the coastal nutrients input into seagrass beds.
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Affiliation(s)
- Zhijian Jiang
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, 511458, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China; Sanya National Marine Ecosystem Research Station, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Sanya, 572000, China; Key Laboratory of Tropical Marine Biotechnology of Hainan Province, Sanya Institute of Oceanology, South China Sea Institute of Oceanology, Sanya, 572100, China; Sanya Institute of Oceanology, South China Sea Institute of Oceanology, Sanya, 572000, China; Guangdong Provincial Key Laboratory of Applied Marine Biology, Guangzhou, 510301, PR China
| | - Linglan Li
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Yang Fang
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Jizhen Lin
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Songlin Liu
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, 511458, PR China; Sanya National Marine Ecosystem Research Station, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Sanya, 572000, China; Key Laboratory of Tropical Marine Biotechnology of Hainan Province, Sanya Institute of Oceanology, South China Sea Institute of Oceanology, Sanya, 572100, China; Sanya Institute of Oceanology, South China Sea Institute of Oceanology, Sanya, 572000, China; Guangdong Provincial Key Laboratory of Applied Marine Biology, Guangzhou, 510301, PR China
| | - Yunchao Wu
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, 511458, PR China; Sanya National Marine Ecosystem Research Station, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Sanya, 572000, China; Key Laboratory of Tropical Marine Biotechnology of Hainan Province, Sanya Institute of Oceanology, South China Sea Institute of Oceanology, Sanya, 572100, China; Sanya Institute of Oceanology, South China Sea Institute of Oceanology, Sanya, 572000, China; Guangdong Provincial Key Laboratory of Applied Marine Biology, Guangzhou, 510301, PR China
| | - Xiaoping Huang
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China; Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, 511458, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China; Sanya National Marine Ecosystem Research Station, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Sanya, 572000, China; Key Laboratory of Tropical Marine Biotechnology of Hainan Province, Sanya Institute of Oceanology, South China Sea Institute of Oceanology, Sanya, 572100, China; Sanya Institute of Oceanology, South China Sea Institute of Oceanology, Sanya, 572000, China; Guangdong Provincial Key Laboratory of Applied Marine Biology, Guangzhou, 510301, PR China.
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Ke M, Ye Y, Li Y, Zhou Z, Xu N, Feng L, Zhang J, Lu T, Cai Z, Qian H. Leaf metabolic influence of glyphosate and nanotubes on the Arabidopsis thaliana phyllosphere. J Environ Sci (China) 2021; 106:66-75. [PMID: 34210440 DOI: 10.1016/j.jes.2021.01.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Revised: 01/06/2021] [Accepted: 01/06/2021] [Indexed: 06/13/2023]
Abstract
Chemical exposure can indirectly affect leaf microbiota communities, but the mechanism driving this phenomenon remains largely unknown. Results revealed that the co-exposure of glyphosate and multi-carbon nanotubes (CNTs) caused a synergistic inhibitory effect on the growth and metabolism of Arabidopsis thaliana shoots. However, only a slight inhibitory effect was induced by nanotubes or glyphosate alone at the tested concentrations. Several intermediate metabolites of nitrogen metabolism and fatty acid synthesis pathways were upregulated under the combined treatment, which increased the amount of energy required to alleviate the disruption caused by the combined treatment. Additionally, compared with the two individual treatments, the glyphosate/nanotube combination treatment induced greater fluctuations in the phyllosphere bacterial community members with low abundance (relative abundance (RA) <1%) at both the family and genus levels, and among these bacteria some plant growth promotion and nutrient supplement related bacteria were markable increased. Strikingly, strong correlations between phyllosphere bacterial diversity and metabolites suggested a potential role of leaf metabolism, particularly nitrogen and carbohydrate metabolism, in restricting the range of leaf microbial taxa. These correlations between phyllosphere bacterial diversity and leaf metabolism will improve our understanding of plant-microbe interactions and the extent of their drivers of variation and the underlying causes of variability in bacterial community composition.
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Affiliation(s)
- Mingjing Ke
- College of Environment, Zhejiang University of Technology, Hangzhou 310032, China
| | - Yizhi Ye
- College of Environment, Zhejiang University of Technology, Hangzhou 310032, China
| | - Yan Li
- College of Environment, Zhejiang University of Technology, Hangzhou 310032, China
| | - Zhigao Zhou
- College of Environment, Zhejiang University of Technology, Hangzhou 310032, China
| | - Nuohan Xu
- College of Environment, Zhejiang University of Technology, Hangzhou 310032, China
| | - Lan Feng
- College of Environment, Zhejiang University of Technology, Hangzhou 310032, China
| | - Jinfeng Zhang
- College of Environment, Zhejiang University of Technology, Hangzhou 310032, China
| | - Tao Lu
- College of Environment, Zhejiang University of Technology, Hangzhou 310032, China
| | - Zhiqiang Cai
- Laboratory of Applied Microbiology and Biotechnology, School of Pharmaceutical Engineering & Life Science, Changzhou University, Changzhou 213164, China
| | - Haifeng Qian
- College of Environment, Zhejiang University of Technology, Hangzhou 310032, China.
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10
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Arnolds KL, Dahlin LR, Ding L, Wu C, Yu J, Xiong W, Zuniga C, Suzuki Y, Zengler K, Linger JG, Guarnieri MT. Biotechnology for secure biocontainment designs in an emerging bioeconomy. Curr Opin Biotechnol 2021; 71:25-31. [PMID: 34091124 DOI: 10.1016/j.copbio.2021.05.004] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 04/21/2021] [Accepted: 05/10/2021] [Indexed: 12/28/2022]
Abstract
Genetically modified organisms (GMOs) have emerged as an integral component of a sustainable bioeconomy, with an array of applications in agriculture, bioenergy, and biomedicine. However, the rapid development of GMOs and associated synthetic biology approaches raises a number of biosecurity concerns related to environmental escape of GMOs, detection thereof, and impact upon native ecosystems. A myriad of genetic safeguards have been deployed in diverse microbial hosts, ranging from classical auxotrophies to global genome recoding. However, to realize the full potential of microbes as biocatalytic platforms in the bioeconomy, a deeper understanding of the fundamental principles governing microbial responsiveness to biocontainment constraints, and interactivity of GMOs with the environment, is required. Herein, we review recent analytical biotechnological advances and strategies to assess biocontainment and microbial bioproductivity, as well as opportunities for predictive systems biodesigns towards securing a viable bioeconomy.
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Affiliation(s)
| | - Lukas R Dahlin
- National Renewable Energy Laboratory, Golden, CO, United States
| | - Lin Ding
- J. Craig Venter Institute, La Jolla, CA, United States
| | - Chao Wu
- National Renewable Energy Laboratory, Golden, CO, United States
| | - Jianping Yu
- National Renewable Energy Laboratory, Golden, CO, United States
| | - Wei Xiong
- National Renewable Energy Laboratory, Golden, CO, United States
| | - Cristal Zuniga
- University of California, San Diego, La Jolla, CA, United States
| | - Yo Suzuki
- J. Craig Venter Institute, La Jolla, CA, United States
| | - Karsten Zengler
- University of California, San Diego, La Jolla, CA, United States
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11
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Li M, Fang A, Yu X, Zhang K, He Z, Wang C, Peng Y, Xiao F, Yang T, Zhang W, Zheng X, Zhong Q, Liu X, Yan Q. Microbially-driven sulfur cycling microbial communities in different mangrove sediments. CHEMOSPHERE 2021; 273:128597. [PMID: 33077194 DOI: 10.1016/j.chemosphere.2020.128597] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2020] [Revised: 10/05/2020] [Accepted: 10/07/2020] [Indexed: 05/13/2023]
Abstract
Microbially-driven sulfur cycling is a vital biogeochemical process in the sulfur-rich mangrove ecosystem. It is critical to evaluate the potential impact of sulfur transformation in mangrove ecosystems. To reveal the diversity, composition, and structure of sulfur-oxidizing bacteria (SOB) and sulfate-reducing bacteria (SRB) and underlying mechanisms, we analyzed the physicochemical properties and sediment microbial communities from an introduced mangrove species (Sonneratia apetala), a native mangrove species (Kandelia obovata) and the mudflat in Hanjiang River Estuary in Guangdong (23.27°N, 116.52°E), China. The results indicated that SOB was dominated by autotrophic Thiohalophilus and chemoautotrophy Chromatium in S. apetala and K. obovata, respectively, while Desulfatibacillum was the dominant genus of SRB in K. obovata sediments. Also, the redundancy analysis indicated that temperature, redox potential (ORP), and SO42- were the significant factors influencing the sulfur cycling microbial communities with elemental sulfur (ES) as the key factor driver for SOB and total carbon (TC) for SRB in mangrove sediments. Additionally, the morphological transformation of ES, acid volatile sulfide (AVS) and SO42- explained the variation of sulfur cycling microbial communities under sulfur-rich conditions, and we found mangrove species-specific dominant Thiohalobacter, Chromatium and Desulfatibacillum, which could well use ES and SO42-, thus promoting the sulfur cycling in mangrove sediments. Meanwhile, the change of nutrient substances (TN, TC) explained why SOB were more susceptible to environmental changes than SRB. Sulfate reducing bacteria produces sulfide in anoxic sediments at depth that then migrate upward, toward fewer reducing conditions, where it's oxidized by sulfur oxidizing bacteria. This study indicates the high ability of SOB and SRB in ES, SO42-,S2- and S2- generation and transformation in sulfur-rich mangrove ecosystems, and provides novel insights into sulfur cycling in other wetland ecosystems from a microbial perspective.
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Affiliation(s)
- Mingyue Li
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China
| | - Anqi Fang
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China
| | - Xiaoli Yu
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China
| | - Keke Zhang
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China
| | - Zhili He
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China; College of Agronomy, Hunan Agricultural University, Changsha, 410128, China
| | - Cheng Wang
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China
| | - Yisheng Peng
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China
| | - Fanshu Xiao
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China.
| | - Tony Yang
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China
| | - Wei Zhang
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China
| | - Xiafei Zheng
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China
| | - Qiuping Zhong
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China
| | - Xingyu Liu
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China
| | - Qingyun Yan
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou, 510006, China.
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12
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Zhang Y, Zhao P, Yue S, Liu M, Qiao Y, Xu S, Gu R, Zhang X, Zhou Y. New insights into physiological effects of anoxia under darkness on the iconic seagrass Zostera marina based on a combined analysis of transcriptomics and metabolomics. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 768:144717. [PMID: 33736305 DOI: 10.1016/j.scitotenv.2020.144717] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Revised: 12/21/2020] [Accepted: 12/23/2020] [Indexed: 06/12/2023]
Abstract
Coastal hypoxia/anoxia is a major emerging threat to global coastal ecosystems. Macroalgae blooms of tens of kilometers are often observed in open waters. These blooms not only cause a lack of oxygen, but also benthic light limitation. We explored the physiological responses of Zostera marina L. to anoxia under darkness. After exposing Z. marina to anoxia under darkness for 72 h, we measured the elongation of leaves and the decrease in maximal quantum yield of photosystem II (Fv/Fm), and investigated the transcriptomic and metabolomic responses to anoxic stress based on RNA-sequencing and liquid chromatography-mass spectrometry (LC-MS) technology. The results showed that anoxic stress significantly reduced the leaf Fv/Fm, and had a significant negative effect on the photosynthesis and growth of Z. marina. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of up-regulated differentially expressed genes (DEGs) showed that glycolysis was the most significant enrichment pathway (p < 0.001), and most of the important products in glycolysis were significantly up-regulated. This indicated that the glycolysis process of anaerobic respiration is promoted under anoxia. The metabolite results also showed that glyceraldehyde 3-phosphate in the glycolysis pathway was significantly up-regulated. Moreover, three genes encoding sucrose synthase (gene-ZOSMA_310G00150, gene-ZOSMA_81G00980, and gene-ZOSMA_8G00730) and one gene encoding alpha-amylase (gene-ZOSMA_95G00270) were significantly up-regulated, providing the sugar basis for the subsequent increase in glycolysis. Furthermore, gene-encoding oxoglutarate dehydrogenase, the rate-limiting step of the tricarboxylic acid (TCA) cycle, was significantly down-regulated, indicating that this cycle was inhibited under anoxia. Metabolomic results showed that L-tryptophan, L-phenylalanine, and DL-leucine were significantly up-regulated. Only significantly decreased glutamate and non-significantly decreased glutamine, substances consumed in alanine and γ-aminobutyric acid (GABA) shunt mechanisms, were detected in the leaves, while GABA and alanine were not detected. The results of this study show that anoxic stress induces a programmed transcriptomic and metabolomic response in seagrass, most likely reflecting a complex strategy of acclimation and adaptation in seagrass to resist anoxic stress.
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Affiliation(s)
- Yu Zhang
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, 266071, China; CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Peng Zhao
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, 570228, China
| | - Shidong Yue
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, 266071, China; CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Mingjie Liu
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, 266071, China; CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yongliang Qiao
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, 266071, China; CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; Qingdao University of Science and Technology, Qingdao, 266000, China
| | - Shaochun Xu
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, 266071, China; CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Ruiting Gu
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, 266071, China; CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xiaomei Zhang
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, 266071, China; CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yi Zhou
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, 266071, China; CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; University of Chinese Academy of Sciences, Beijing, 100049, China.
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13
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Xie P, Ho SH, Xiao QY, Xu XJ, Zhao L, Zhou X, Lee DJ, Ren NQ, Chen C. Revealing the role of nitrate on sulfide removal coupled with bioenergy production in Chlamydomonas sp. Tai-03: Metabolic pathways and mechanisms. JOURNAL OF HAZARDOUS MATERIALS 2020; 399:123115. [PMID: 32937723 DOI: 10.1016/j.jhazmat.2020.123115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Revised: 05/23/2020] [Accepted: 06/02/2020] [Indexed: 06/11/2023]
Abstract
Recently, simultaneous sulfide removal and bioenergy production by microalgal treatment have attracted growing attention. However, the response of nitrogen metabolism to the sulfide-removal process has yet to be explored. Here, variable levels of sulfide could be completely removed by Chlamydomonas sp. Tai-03 under both high and low nitrate conditions in synthetic wastewaters. The highest sulfide removal rate of 5.56 mg-S L-1 h-1 was achieved with the addition of 100 mg L-1 sulfide in the presence of high nitrate. Meanwhile, sulfide was chemically oxidized to sulfate and then ingested by microalgae. Interestingly, sulfide-removal efficiency critically depended on nitrate concentration. Sulfide can also enhance the ability of microalgae to assimilate nitrogen. Based on the analysis of sulfur- and nitrogen-related metabolic profiling, serine as a precursor decreased by 94 % under low levels of nitrate, which induced the significant inhibition of cysteine and methionine biosynthesis. The results indicated that nitrogen source played a critical role in the sulfur cycle because of the positive relationship between the aforementioned metabolic processes and nitrate concentration. Additionally, sulfide can improve lipid and carbohydrate productivity under high levels of nitrate. This study enhances our understanding of the mechanisms underlying the simultaneous removal of sulfide and alternative bioenergy production.
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Affiliation(s)
- Peng Xie
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China
| | - Shih-Hsin Ho
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China
| | - Qing-Yang Xiao
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China
| | - Xi-Jun Xu
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China
| | - Lei Zhao
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China
| | - Xu Zhou
- Engineering Laboratory of Microalgal Bioenergy, Shenzhen Graduate School, Harbin Institute of Technology, Shenzhen, 518055, China
| | - Duu-Jong Lee
- Department of Chemical Engineering, National Taiwan University, Taipei 106, Taiwan; Department of Chemical Engineering, National Taiwan University of Science and Technology, Taipei 106, Taiwan
| | - Nan-Qi Ren
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China
| | - Chuan Chen
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China.
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14
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Martin BC, Alarcon MS, Gleeson D, Middleton JA, Fraser MW, Ryan MH, Holmer M, Kendrick GA, Kilminster K. Root microbiomes as indicators of seagrass health. FEMS Microbiol Ecol 2020; 96:5679015. [PMID: 31841144 DOI: 10.1093/femsec/fiz201] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Accepted: 12/13/2019] [Indexed: 11/12/2022] Open
Abstract
The development of early warning indicators that identify ecosystem stress is a priority for improving ecosystem management. As microbial communities respond rapidly to environmental disturbance, monitoring their composition could prove one such early indicator of environmental stress. We combined 16S rRNA gene sequencing of the seagrass root microbiome of Halophila ovalis with seagrass health metrics (biomass, productivity and Fsulphide) to develop microbial indicators for seagrass condition across the Swan-Canning Estuary and the Leschenault Estuary (south-west Western Australia); the former had experienced an unseasonal rainfall event leading to declines in seagrass health. Microbial indicators detected sites of potential stress that other seagrass health metrics failed to detect. Genera that were more abundant in 'healthy' seagrasses included putative methylotrophic bacteria (e.g. Methylotenera and Methylophaga), iron cycling bacteria (e.g. Deferrisoma and Geothermobacter) and N2 fixing bacteria (e.g. Rhizobium). Conversely, genera that were more abundant in 'stressed' seagrasses were dominated by putative sulphur-cycling bacteria, both sulphide-oxidising (e.g. Candidatus Thiodiazotropha and Candidatus Electrothrix) and sulphate-reducing (e.g. SEEP-SRB1, Desulfomonile and Desulfonema). The sensitivity of the microbial indicators developed here highlights their potential to be further developed for use in adaptive seagrass management, and emphasises their capacity to be effective early warning indicators of stress.
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Affiliation(s)
- Belinda C Martin
- School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia.,The UWA Oceans Institute, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia.,Ooid Scientific Graphics & Editing, White Gum Valley, WA 6162, Australia
| | - Marta Sanchez Alarcon
- Department of Water and Environmental Regulation, Government of Western Australia, Locked Bag 10, Joondalup DC 6919, Australia
| | - Deirdre Gleeson
- UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Jen A Middleton
- School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia.,Ooid Scientific Graphics & Editing, White Gum Valley, WA 6162, Australia
| | - Matthew W Fraser
- School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia.,The UWA Oceans Institute, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Megan H Ryan
- UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Marianne Holmer
- Institute of Biology, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark
| | - Gary A Kendrick
- School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia.,The UWA Oceans Institute, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Kieryn Kilminster
- School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia.,Department of Water and Environmental Regulation, Government of Western Australia, Locked Bag 10, Joondalup DC 6919, Australia
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15
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Stockbridge J, Jones AR, Gillanders BM. A meta-analysis of multiple stressors on seagrasses in the context of marine spatial cumulative impacts assessment. Sci Rep 2020; 10:11934. [PMID: 32686719 PMCID: PMC7371696 DOI: 10.1038/s41598-020-68801-w] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Accepted: 06/29/2020] [Indexed: 02/02/2023] Open
Abstract
Humans are placing more strain on the world’s oceans than ever before. Furthermore, marine ecosystems are seldom subjected to single stressors, rather they are frequently exposed to multiple, concurrent stressors. When the combined effect of these stressors is calculated and mapped through cumulative impact assessments, it is often assumed that the effects are additive. However, there is increasing evidence that different combinations of stressors can have non-additive impacts, potentially leading to synergistic and unpredictable impacts on ecosystems. Accurately predicting how stressors interact is important in conservation, as removal of certain stressors could provide a greater benefit, or be more detrimental than would be predicted by an additive model. Here, we conduct a meta-analysis to assess the prevalence of additive, synergistic, and antagonistic stressor interaction effects using seagrasses as case study ecosystems. We found that additive interactions were the most commonly reported in seagrass studies. Synergistic and antagonistic interactions were also common, but there was no clear way of predicting where these non-additive interactions occurred. More studies which synthesise the results of stressor interactions are needed to be able to generalise interactions across ecosystem types, which can then be used to improve models for assessing cumulative impacts.
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Affiliation(s)
- Jackson Stockbridge
- Southern Seas Ecology Laboratories and Environment Institute, School of Biological Sciences, University of Adelaide, Darling Building DX 650 418, Adelaide, SA, 5005, Australia.
| | - Alice R Jones
- Southern Seas Ecology Laboratories and Environment Institute, School of Biological Sciences, University of Adelaide, Darling Building DX 650 418, Adelaide, SA, 5005, Australia
| | - Bronwyn M Gillanders
- Southern Seas Ecology Laboratories and Environment Institute, School of Biological Sciences, University of Adelaide, Darling Building DX 650 418, Adelaide, SA, 5005, Australia
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16
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Gagnon K, Rinde E, Bengil EGT, Carugati L, Christianen MJA, Danovaro R, Gambi C, Govers LL, Kipson S, Meysick L, Pajusalu L, Tüney Kızılkaya İ, Koppel J, Heide T, Katwijk MM, Boström C. Facilitating foundation species: The potential for plant–bivalve interactions to improve habitat restoration success. J Appl Ecol 2020. [DOI: 10.1111/1365-2664.13605] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Karine Gagnon
- Environmental and Marine Biology Åbo Akademi University Turku Finland
| | - Eli Rinde
- Norwegian Institute for Water Research Oslo Norway
| | - Elizabeth G. T. Bengil
- Mediterranean Conservation Society Izmir Turkey
- Girne American UniversityMarine School Girne TRNC via Turkey
| | - Laura Carugati
- Department of Life and Environmental Sciences Polytechnic University of Marche Ancona Italy
| | - Marjolijn J. A. Christianen
- Aquatic Ecology and Water Quality Management Group Wageningen University Wageningen The Netherlands
- Department of Environmental Science Institute for Wetland and Water Research Radboud University Nijmegen Nijmegen The Netherlands
| | - Roberto Danovaro
- Department of Life and Environmental Sciences Polytechnic University of Marche Ancona Italy
- Stazione Zoologica Anton Dohrn Naples Italy
| | - Cristina Gambi
- Department of Life and Environmental Sciences Polytechnic University of Marche Ancona Italy
| | - Laura L. Govers
- Department of Environmental Science Institute for Wetland and Water Research Radboud University Nijmegen Nijmegen The Netherlands
- Groningen Institute for Evolutionary Life Sciences University of Groningen Groningen The Netherlands
| | - Silvija Kipson
- Faculty of Science Department of Biology University of Zagreb Zagreb Croatia
| | - Lukas Meysick
- Environmental and Marine Biology Åbo Akademi University Turku Finland
| | - Liina Pajusalu
- Estonian Marine Institute University of Tartu Tallinn Estonia
| | - İnci Tüney Kızılkaya
- Mediterranean Conservation Society Izmir Turkey
- Faculty of Science Ege University Izmir Turkey
| | - Johan Koppel
- Groningen Institute for Evolutionary Life Sciences University of Groningen Groningen The Netherlands
- Royal Netherlands Institute for Sea Research and Utrecht University Yerseke The Netherlands
| | - Tjisse Heide
- Department of Environmental Science Institute for Wetland and Water Research Radboud University Nijmegen Nijmegen The Netherlands
- Groningen Institute for Evolutionary Life Sciences University of Groningen Groningen The Netherlands
- Department of Coastal Systems Royal Netherlands Institute of Sea Research and Utrecht University Den Burg The Netherlands
| | - Marieke M. Katwijk
- Department of Environmental Science Institute for Wetland and Water Research Radboud University Nijmegen Nijmegen The Netherlands
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Li X, Ban Z, Yu F, Hao W, Hu X. Untargeted Metabolic Pathway Analysis as an Effective Strategy to Connect Various Nanoparticle Properties to Nanoparticle-Induced Ecotoxicity. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:3395-3406. [PMID: 32097552 DOI: 10.1021/acs.est.9b06096] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Elucidation of the relationships between nanoparticle properties and ecotoxicity is a fundamental issue for environmental applications and risk assessment of nanoparticles. However, effective strategies to connect the various properties of nanoparticles with their ecotoxicity remain largely unavailable. Herein, an untargeted metabolic pathway analysis was employed to investigate the environmental risk posed by 10 typical nanoparticles (AgNPs, CuNPs, FeNPs, ZnONPs, SiO2NPs, TiO2NPs, GO, GOQDs, SWCNTs, and C60) to rice (a staple food for half of the world's population). Downregulation of carbohydrate metabolism and upregulation of amino acid metabolism were the two dominant metabolic effects induced by all tested nanoparticles. Partial least-squares regression analysis indicated that a zerovalent metal and high specific surface area positively contributed to the downregulation of carbohydrate metabolism, indicating strong abiotic stress. In contrast, the carbon type, the presence of a spherical or sheet shape, and the absence of oxygen functional groups in the nanoparticles positively contributed to the upregulation of amino acid metabolism, indicating adaptation to abiotic stress. Moreover, network relationships among five properties of nanoparticles were established for these metabolic pathways. The results of the present study will aid in the understanding and prediction of environmental risks and in the design of environmentally friendly nanoparticles.
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Affiliation(s)
- Xiaokang Li
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)/Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, People's Republic of China
| | - Zhan Ban
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)/Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, People's Republic of China
| | - Fubo Yu
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)/Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, People's Republic of China
| | - Weidan Hao
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)/Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, People's Republic of China
| | - Xiangang Hu
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)/Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, People's Republic of China
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18
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Andrzejczak OA, Havelund JF, Wang WQ, Kovalchuk S, Hagensen CE, Hasler-Sheetal H, Jensen ON, Rogowska-Wrzesinska A, Møller IM, Hebelstrup KH. The Hypoxic Proteome and Metabolome of Barley ( Hordeum vulgare L.) with and without Phytoglobin Priming. Int J Mol Sci 2020; 21:E1546. [PMID: 32102473 PMCID: PMC7073221 DOI: 10.3390/ijms21041546] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2020] [Revised: 02/20/2020] [Accepted: 02/21/2020] [Indexed: 12/13/2022] Open
Abstract
Overexpression of phytoglobins (formerly plant hemoglobins) increases the survival rate of plant tissues under hypoxia stress by the following two known mechanisms: (1) scavenging of nitric oxide (NO) in the phytoglobin/NO cycle and (2) mimicking ethylene priming to hypoxia when NO scavenging activates transcription factors that are regulated by levels of NO and O2 in the N-end rule pathway. To map the cellular and metabolic effects of hypoxia in barley (Hordeum vulgare L., cv. Golden Promise), with or without priming to hypoxia, we studied the proteome and metabolome of wild type (WT) and hemoglobin overexpressing (HO) plants in normoxia and after 24 h hypoxia (WT24, HO24). The WT plants were more susceptible to hypoxia than HO plants. The chlorophyll a + b content was lowered by 50% and biomass by 30% in WT24 compared to WT, while HO plants were unaffected. We observed an increase in ROS production during hypoxia treatment in WT seedlings that was not observed in HO seedlings. We identified and quantified 9694 proteins out of which 1107 changed significantly in abundance. Many proteins, such as ion transporters, Ca2+-signal transduction, and proteins related to protein degradation were downregulated in HO plants during hypoxia, but not in WT plants. Changes in the levels of histones indicates that chromatin restructuring plays a role in the priming of hypoxia. We also identified and quantified 1470 metabolites, of which the abundance of >500 changed significantly. In summary the data confirm known mechanisms of hypoxia priming by ethylene priming and N-end rule activation; however, the data also indicate the existence of other mechanisms for hypoxia priming in plants.
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Affiliation(s)
- Olga A. Andrzejczak
- Department of Agroecology, Section of Crop Genetics and Biotechnology, Aarhus University, Forsøgsvej 1, DK-4200 Slagelse, Denmark;
| | - Jesper F. Havelund
- Department of Biochemistry & Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark; (J.F.H.); (W.-Q.W.); (S.K.); (C.E.H.); (H.H.-S.); (O.N.J.); (A.R.-W.)
| | - Wei-Qing Wang
- Department of Biochemistry & Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark; (J.F.H.); (W.-Q.W.); (S.K.); (C.E.H.); (H.H.-S.); (O.N.J.); (A.R.-W.)
| | - Sergey Kovalchuk
- Department of Biochemistry & Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark; (J.F.H.); (W.-Q.W.); (S.K.); (C.E.H.); (H.H.-S.); (O.N.J.); (A.R.-W.)
| | - Christina E. Hagensen
- Department of Biochemistry & Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark; (J.F.H.); (W.-Q.W.); (S.K.); (C.E.H.); (H.H.-S.); (O.N.J.); (A.R.-W.)
| | - Harald Hasler-Sheetal
- Department of Biochemistry & Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark; (J.F.H.); (W.-Q.W.); (S.K.); (C.E.H.); (H.H.-S.); (O.N.J.); (A.R.-W.)
- Nordcee, Department of Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
| | - Ole N. Jensen
- Department of Biochemistry & Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark; (J.F.H.); (W.-Q.W.); (S.K.); (C.E.H.); (H.H.-S.); (O.N.J.); (A.R.-W.)
| | - Adelina Rogowska-Wrzesinska
- Department of Biochemistry & Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark; (J.F.H.); (W.-Q.W.); (S.K.); (C.E.H.); (H.H.-S.); (O.N.J.); (A.R.-W.)
| | - Ian Max Møller
- Department of Molecular Biology and Genetics, Aarhus University, Forsøgsvej 1, DK-4200 Slagelse, Denmark;
| | - Kim H. Hebelstrup
- Department of Agroecology, Section of Crop Genetics and Biotechnology, Aarhus University, Forsøgsvej 1, DK-4200 Slagelse, Denmark;
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19
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Zhong Y, Sagnelli D, Topbjerg HB, Hasler-Sheetal H, Andrzejczak OA, Hooshmand K, Gislum R, Jiang D, Møller IM, Blennow A, Hebelstrup KH. Expression of starch-binding factor CBM20 in barley plastids controls the number of starch granules and the level of CO2 fixation. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:234-246. [PMID: 31494665 PMCID: PMC6913705 DOI: 10.1093/jxb/erz401] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Accepted: 08/22/2019] [Indexed: 05/20/2023]
Abstract
The biosynthesis of starch granules in plant plastids is coordinated by the orchestrated action of transferases, hydrolases, and dikinases. These enzymes either contain starch-binding domain(s) themselves, or are dependent on direct interactions with co-factors containing starch-binding domains. As a means to competitively interfere with existing starch-protein interactions, we expressed the protein module Carbohydrate-Binding Motif 20 (CBM20), which has a very high affinity for starch, ectopically in barley plastids. This interference resulted in an increase in the number of starch granules in chloroplasts and in formation of compound starch granules in grain amyloplasts, which is unusual for barley. More importantly, we observed a photosystem-independent inhibition of CO2 fixation, with a subsequent reduced growth rate and lower accumulation of carbohydrates with effects throughout the metabolome, including lower accumulation of transient leaf starch. Our results demonstrate the importance of endogenous starch-protein interactions for controlling starch granule morphology and number, and plant growth, as substantiated by a metabolic link between starch-protein interactions and control of CO2 fixation in chloroplasts.
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Affiliation(s)
- Yingxin Zhong
- Department of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, Forsøgsvej 1, 4200 Slagelse, Denmark
- National Technique Innovation Center for Regional Wheat Production/Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture/National Engineering and technology Center for Information Agriculture, Nanjing Agricultural University, Nanjing, P. R. China
| | - Domenico Sagnelli
- Department of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, Forsøgsvej 1, 4200 Slagelse, Denmark
- Department of Plant and Environmental Sciences, Copenhagen University, Frederiksberg, Denmark
| | - Henrik Bak Topbjerg
- Department of Agroecology, Aarhus University, Flakkebjerg, Forsøgsvej 1, 4200 Slagelse, Denmark
| | - Harald Hasler-Sheetal
- Department of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, Forsøgsvej 1, 4200 Slagelse, Denmark
- Nordcee, Department of Biology, University of Southern Denmark, Odense, Denmark
| | - Olga Agata Andrzejczak
- Department of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, Forsøgsvej 1, 4200 Slagelse, Denmark
- Department of Agroecology, Aarhus University, Flakkebjerg, Forsøgsvej 1, 4200 Slagelse, Denmark
| | - Kourosh Hooshmand
- Department of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, Forsøgsvej 1, 4200 Slagelse, Denmark
- Department of Plant and Environmental Sciences, Copenhagen University, Frederiksberg, Denmark
| | - René Gislum
- Department of Agroecology, Aarhus University, Flakkebjerg, Forsøgsvej 1, 4200 Slagelse, Denmark
| | - Dong Jiang
- National Technique Innovation Center for Regional Wheat Production/Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture/National Engineering and technology Center for Information Agriculture, Nanjing Agricultural University, Nanjing, P. R. China
| | - Ian Max Møller
- Department of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, Forsøgsvej 1, 4200 Slagelse, Denmark
| | - Andreas Blennow
- Department of Plant and Environmental Sciences, Copenhagen University, Frederiksberg, Denmark
| | - Kim Henrik Hebelstrup
- Department of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, Forsøgsvej 1, 4200 Slagelse, Denmark
- Department of Agroecology, Aarhus University, Flakkebjerg, Forsøgsvej 1, 4200 Slagelse, Denmark
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20
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Ashikin CN, Rozaimi M, Arina N, Fairoz M, Hidayah N. Nitrogen dynamics within an estuarine seagrass meadow under heavy anthropogenic influence. MARINE POLLUTION BULLETIN 2020; 150:110628. [PMID: 31740184 DOI: 10.1016/j.marpolbul.2019.110628] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2018] [Revised: 03/19/2019] [Accepted: 09/23/2019] [Indexed: 06/10/2023]
Abstract
Nitrogen is essential for seagrass productivity but excesses in nitrogen exposure contribute to declines in meadow health. This study reports baseline data of bulk nitrogen loadings and contents in surficial sediments and seagrass tissues to determine the extent of nitrogen inputs in meadows of Sungai Pulai estuary (Johor, Malaysia). The sediment contained relatively low nitrogen loadings (mean range of 91-94 g N m-2) with likely origins from land-based sources. At the meadow-level, Enhalus acoroides, Cymodocea serrulata and Thalassia hemprichii are the most important species as nitrogen sinks. The highest δ15N values of seagrass tissues were recorded for T. hemprichii (10.7 ± 0.4‰), which indicated an elevated capacity for internal recycling of nitrogen. The data demonstrates the provision of ecosystem services by the meadows in mitigating excess nitrogen imported into the estuary. Seagrasses health, however, needs to be at optimum levels for the effectiveness of the meadow as a nutrient sink.
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Affiliation(s)
- Che Nurul Ashikin
- Centre for Earth Sciences and Environment, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600, UKM Bangi, Selangor, Malaysia
| | - Mohammad Rozaimi
- Centre for Earth Sciences and Environment, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600, UKM Bangi, Selangor, Malaysia.
| | - Natasha Arina
- Centre for Earth Sciences and Environment, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600, UKM Bangi, Selangor, Malaysia
| | - Mohammad Fairoz
- Centre for Earth Sciences and Environment, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600, UKM Bangi, Selangor, Malaysia
| | - Nur Hidayah
- Centre for Earth Sciences and Environment, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600, UKM Bangi, Selangor, Malaysia
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21
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Zhou X, Li Y, Li H, Yang Z, Zuo C. Responses in the crucian carp (Carassius auratus) exposed to environmentally relevant concentration of 17α-Ethinylestradiol based on metabolomics. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2019; 183:109501. [PMID: 31401330 DOI: 10.1016/j.ecoenv.2019.109501] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Revised: 07/27/2019] [Accepted: 07/30/2019] [Indexed: 06/10/2023]
Abstract
17α-ethynylestradiol (EE2), a ubiquitous synthetic endocrine disrupting chemical, was the principal component of contraceptive drugs and one of common hormone medications. The detrimental impact of EE2 on the reproduction of organisms was widely recognized. However, the underlying mechanisms of physiological and metabolome effects of EE2 on freshwater fish are still unclear. This study investigated the toxic effects and related mechanisms of EE2 on freshwater fish crucian carp (Carassius auratus) based on metabolomics. Crucian carp were exposed to EE2 at environmentally relevant concentration for 9 days, 18 days, and 27 days, and the biological responses were explored through analysis of the physiological endpoints, steroid hormones, and metabolome. The physiological endpoints of crucian carp had no distinct change after EE2 exposure. However, metabolomics analysis probed significant deviation based on chemometrics, indicating that the metabolomics approach was more sensitive to the effects of EE2 at environmentally relevant concentration to freshwater fish than the traditional endpoints. The alterations of 24 metabolites in gonad and 16 metabolites in kidney were induced by treatment with EE2, respectively, which suggesting the perturbations in amino acid metabolism, lipid metabolism, energy metabolism, and oxidative stress. Moreover, EE2 exposure could induce the disruption of lipid metabolism and then broke the homeostasis of endogenous steroid hormones. Metabolomics provided a new strategy for the studies on contaminant exposure at a low dose in the short term and gave important information for the toxicology and mechanism of EE2.
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Affiliation(s)
- Xinyi Zhou
- Center for Environment and Water Resources, College of Chemistry and Chemical Engineering, Central South University, Changsha, China; Key Laboratory of Hunan Province for Water Environment and Agriculture Product Safety, Changsha, China.
| | - Yue Li
- Center for Environment and Water Resources, College of Chemistry and Chemical Engineering, Central South University, Changsha, China; Key Laboratory of Hunan Province for Water Environment and Agriculture Product Safety, Changsha, China.
| | - Haipu Li
- Center for Environment and Water Resources, College of Chemistry and Chemical Engineering, Central South University, Changsha, China; Key Laboratory of Hunan Province for Water Environment and Agriculture Product Safety, Changsha, China.
| | - Zhaoguang Yang
- Center for Environment and Water Resources, College of Chemistry and Chemical Engineering, Central South University, Changsha, China; Key Laboratory of Hunan Province for Water Environment and Agriculture Product Safety, Changsha, China.
| | - Chenchen Zuo
- Center for Environment and Water Resources, College of Chemistry and Chemical Engineering, Central South University, Changsha, China; Key Laboratory of Hunan Province for Water Environment and Agriculture Product Safety, Changsha, China.
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22
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Ke M, Qu Q, Peijnenburg WJGM, Li X, Zhang M, Zhang Z, Lu T, Pan X, Qian H. Phytotoxic effects of silver nanoparticles and silver ions to Arabidopsis thaliana as revealed by analysis of molecular responses and of metabolic pathways. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 644:1070-1079. [PMID: 30743820 DOI: 10.1016/j.scitotenv.2018.07.061] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2018] [Revised: 07/02/2018] [Accepted: 07/05/2018] [Indexed: 06/09/2023]
Abstract
The acute (3 days) and chronic (whole life history) responses of Arabidopsis thaliana following exposure to silver nanoparticles (AgNPs) and Ag+ ions (AgNO3) in respectively a hydroponic medium and in soil were studied. After 3 days of hydroponic exposure, AgNPs (1.0 and 2.5 mg/L) exerted more severe inhibitory effects on plant (shoot and root) growth and photosynthesis than the same concentrations of Ag+ ions. In soil cultivation, the photoperiod, the autonomous, and the vernalization pathways were down-regulated to 0.15- to 0.5-fold of the control after 12.5 mg/kg AgNPs treatment. This exposure caused a decrease of approximately 25%-40% as compared to the control of the transcription of flowering key genes including AP1, LFY, FT and SOC1, and finally resulted in a delayed flowering time of 5 days. Only autonomous and vernalization pathways were inhibited by Ag+ ion treatment and ultimately the time of flowering in treated plants was delayed by 3 days. The energy production related metabolic pathways in the tricarboxylic acid cycle and in sugar metabolism were stimulated stronger by AgNPs than by Ag+ ion treatment, thus releasing more energy and accelerating the physiological metabolic responses against stress in the AgNPs treatment while subsequently reducing the plant growth and yield at the maturation stage. Importantly, shikimate-phenylpropanoid biosynthesis, and tryptophan and galactose metabolisms were regulated only by the AgNPs treatment, which was a specific effect of nanoparticles. This work provides a systematic understanding at the molecular, physiological as well as metabolic level of the effects of AgNPs and Ag+ ions in A. thaliana.
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Affiliation(s)
- Mingjing Ke
- College of Environment, Zhejiang University of Technology, Hangzhou, PR China
| | - Qian Qu
- College of Environment, Zhejiang University of Technology, Hangzhou, PR China
| | - W J G M Peijnenburg
- Institute of Environmental Sciences (CML), Leiden University, 2300 RA Leiden, The Netherlands; National Institute of Public Health and the Environment (RIVM), Center for Safety of Substances and Products, P.O. Box 1, Bilthoven, The Netherlands
| | - Xingxing Li
- College of Environment, Zhejiang University of Technology, Hangzhou, PR China
| | - Meng Zhang
- College of Environment, Zhejiang University of Technology, Hangzhou, PR China
| | - Zhenyan Zhang
- College of Environment, Zhejiang University of Technology, Hangzhou, PR China
| | - Tao Lu
- College of Environment, Zhejiang University of Technology, Hangzhou, PR China
| | - Xiangliang Pan
- College of Environment, Zhejiang University of Technology, Hangzhou, PR China
| | - Haifeng Qian
- College of Environment, Zhejiang University of Technology, Hangzhou, PR China; Xinjiang Key Laboratory of Environmental Pollution and Bioremediation, Chinese Academy of Sciences, Urumqi, PR China.
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23
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Lyimo LD, Gullström M, Lyimo TJ, Deyanova D, Dahl M, Hamisi MI, Björk M. Shading and simulated grazing increase the sulphide pool and methane emission in a tropical seagrass meadow. MARINE POLLUTION BULLETIN 2018; 134:89-93. [PMID: 28935361 DOI: 10.1016/j.marpolbul.2017.09.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2017] [Revised: 08/31/2017] [Accepted: 09/02/2017] [Indexed: 06/07/2023]
Abstract
Though seagrass meadows are among the most productive habitats in the world, contributing substantially to long-term carbon storage, studies of the effects of critical disturbances on the fate of carbon sequestered in the sediment and biomass of these meadows are scarce. In a manipulative in situ experiment, we studied the effects of successive loss of seagrass biomass as a result of shading and simulated grazing at two intensity levels on sulphide (H2S) content and methane (CH4) emission in a tropical seagrass meadow in Zanzibar (Tanzania). In all disturbed treatments, we found a several-fold increase in both the sulphide concentration of the sediment pore-water and the methane emissions from the sediment surface (except for CH4 emissions in the low-shading treatment). This could be due to the ongoing degradation of belowground biomass shed by the seagrass plants, supporting the production of both sulphate-reducing bacteria and methanogens, possibly exacerbated by the loss of downwards oxygen transport via seagrass plants. The worldwide rapid loss of seagrass areas due to anthropogenic activities may therefore have significant effects on carbon sink-source relationships within coastal seas.
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Affiliation(s)
- Liberatus D Lyimo
- Department of Ecology, Environment and Plant Sciences, Stockholm University, SE-106 91 Stockholm, Sweden; School of Biological Science, University of Dodoma, P.O. Box 338, Dodoma, Tanzania
| | - Martin Gullström
- Department of Ecology, Environment and Plant Sciences, Stockholm University, SE-106 91 Stockholm, Sweden.
| | - Thomas J Lyimo
- Department of Molecular Biology and Biotechnology, University of Dar es Salaam, P.O. Box 35060, Dar es Salaam, Tanzania
| | - Diana Deyanova
- Department of Ecology, Environment and Plant Sciences, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Martin Dahl
- Department of Ecology, Environment and Plant Sciences, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Mariam I Hamisi
- School of Biological Science, University of Dodoma, P.O. Box 338, Dodoma, Tanzania
| | - Mats Björk
- Department of Ecology, Environment and Plant Sciences, Stockholm University, SE-106 91 Stockholm, Sweden
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24
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Antioxidant response of cucumber (Cucumis sativus) exposed to nano copper pesticide: Quantitative determination via LC-MS/MS. Food Chem 2018; 270:47-52. [PMID: 30174074 DOI: 10.1016/j.foodchem.2018.07.069] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2018] [Revised: 05/30/2018] [Accepted: 07/11/2018] [Indexed: 11/22/2022]
Abstract
Targeted metabolomics aims to provide a new approach to investigate metabolites and gather both qualitative and quantitative information. We describe a protocol for extraction and analysis of plant metabolites, specifically 13 secondary metabolites (antioxidants) using liquid chromatography coupled to triple quadrupole mass spectrometry (LC-MS/MS), with high linearity (R2 > 0.99) and reproducibility (0.23-6.23 R%) with low limits of detection (>0.001 ng/mL) and quantification (>0.2 ng/mL). The protocol was applied to study the antioxidant response of cucumber plants exposed to nanocopper pesticide. Dose-dependent changes in antioxidant concentrations were found, and 10 antioxidants were significantly consumed to scavenge reactive oxygen species, protecting plants from damage. Levels of three antioxidants were up-regulated, as a response to the depletion of the other antioxidants, signaling activation of the defense system. We demonstrated that the reported LC-MS/MS method provides a quantitative analysis of antioxidants in plant tissues, for example to investigate interactions between plants and nanomaterials.
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25
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Zhao L, Huang Y, Keller AA. Comparative Metabolic Response between Cucumber ( Cucumis sativus) and Corn ( Zea mays) to a Cu(OH) 2 Nanopesticide. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2018; 66:6628-6636. [PMID: 28493687 DOI: 10.1021/acs.jafc.7b01306] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Due to their unique properties, copper-based nanopesticides are emerging in the market. Thus, understanding their effect on crop plants is very important. Metabolomics can capture a snapshot of cellular metabolic responses to a stressor. We selected maize and cucumber as model plants for exposure to different doses of Cu(OH)2 nanopesticide. GC-TOF-MS-based metabolomics was employed to determine the metabolic responses of these two species. Results revealed significant differences in metabolite profile changes between maize and cucumber. Furthermore, the Cu(OH)2 nanopesticide induced metabolic reprogramming in both species, but in different manners. In maize, several intermediate metabolites of the glycolysis pathway and tricarboxylic acid cycle (TCA) were up-regulated, indicating the energy metabolism was activated. In addition, the levels of aromatic compounds (4-hydroxycinnamic acid and 1,2,4-benzenetriol) and their precursors (phenylalanine, tyrosine) were enhanced, indicating the activation of shikimate-phenylpropanoid biosynthesis in maize leaves, which is an antioxidant defense-related pathway. In cucumber, arginine and proline metabolic pathways were the most significantly altered pathway. Both species exhibited altered levels of fatty acids and polysaccharides, suggesting the cell membrane and cell wall composition may change in response to Cu(OH)2 nanopesticide. Thus, metabolomics helps to deeply understand the differential response of these plants to the same nanopesticide stressor.
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Affiliation(s)
- Lijuan Zhao
- Bren School of Environmental Science & Management , University of California , Santa Barbara , California 93106-5131 , United States
- Center for Environmental Implications of Nanotechnology , University of California , Santa Barbara , California 93106-5131 , United States
| | - Yuxiong Huang
- Bren School of Environmental Science & Management , University of California , Santa Barbara , California 93106-5131 , United States
- Center for Environmental Implications of Nanotechnology , University of California , Santa Barbara , California 93106-5131 , United States
| | - Arturo A Keller
- Bren School of Environmental Science & Management , University of California , Santa Barbara , California 93106-5131 , United States
- Center for Environmental Implications of Nanotechnology , University of California , Santa Barbara , California 93106-5131 , United States
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26
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Herzog M, Fukao T, Winkel A, Konnerup D, Lamichhane S, Alpuerto JB, Hasler-Sheetal H, Pedersen O. Physiology, gene expression, and metabolome of two wheat cultivars with contrasting submergence tolerance. PLANT, CELL & ENVIRONMENT 2018; 41:1632-1644. [PMID: 29664146 DOI: 10.1111/pce.13211] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Revised: 03/15/2018] [Accepted: 03/26/2018] [Indexed: 05/05/2023]
Abstract
Responses of wheat (Triticum aestivum) to complete submergence are not well understood as research has focused on waterlogging (soil flooding). The aim of this study was to characterize the responses of 2 wheat cultivars differing vastly in submergence tolerance to test if submergence tolerance was linked to shoot carbohydrate consumption as seen in rice. Eighteen-day-old wheat cultivars Frument (intolerant) and Jackson (tolerant) grown in soil were completely submerged for up to 19 days while assessing responses in physiology, gene expression, and shoot metabolome. Results revealed 50% mortality after 9.3 and 15.9 days of submergence in intolerant Frument and tolerant Jackson, respectively, and significantly higher growth in Jackson during recovery. Frument displayed faster leaf degradation as evident from leaf tissue porosity, chlorophylla , and metabolomic fingerprinting. Surprisingly, shoot soluble carbohydrates, starch, and individual sugars declined to similarly low levels in both cultivars by day 5, showing that cultivar Jackson tolerated longer periods of low shoot carbohydrate levels than Frument. Moreover, intolerant Frument showed higher levels of phytol and the lipid peroxidation marker malondialdehyde relative to tolerant Jackson. Consequently, we propose to further investigate the role of ethylene sensitivity and deprivation of reactive O2 species in submerged wheat.
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Affiliation(s)
- Max Herzog
- The Freshwater Biological Laboratory, Department of Biology, University of Copenhagen, Universitetsparken 4, 3rd floor, Copenhagen, 2100, Denmark
| | - Takeshi Fukao
- Department of Crop and Soil Environmental Sciences, Virginia Tech, 1880 Pratt Drive, Blacksburg, Virginia, 24061, USA
| | - Anders Winkel
- The Freshwater Biological Laboratory, Department of Biology, University of Copenhagen, Universitetsparken 4, 3rd floor, Copenhagen, 2100, Denmark
| | - Dennis Konnerup
- The Freshwater Biological Laboratory, Department of Biology, University of Copenhagen, Universitetsparken 4, 3rd floor, Copenhagen, 2100, Denmark
- Aarhus Institute of Advanced Studies (AIAS), Aarhus University, Høegh-Guldbergs Gade 6B, 8000 Aarhus C, Denmark
| | - Suman Lamichhane
- Department of Crop and Soil Environmental Sciences, Virginia Tech, 1880 Pratt Drive, Blacksburg, Virginia, 24061, USA
| | - Jasper Benedict Alpuerto
- Department of Crop and Soil Environmental Sciences, Virginia Tech, 1880 Pratt Drive, Blacksburg, Virginia, 24061, USA
| | - Harald Hasler-Sheetal
- Nordcee, Department of Biology, University of Southern Denmark, Campusvej 55, Odense, 5230, Denmark
- VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Odense, 5230, Denmark
| | - Ole Pedersen
- The Freshwater Biological Laboratory, Department of Biology, University of Copenhagen, Universitetsparken 4, 3rd floor, Copenhagen, 2100, Denmark
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27
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Chiu KH, Dong CD, Chen CF, Tsai ML, Ju YR, Chen TM, Chen CW. NMR-based metabolomics for the environmental assessment of Kaohsiung Harbor sediments exemplified by a marine amphipod (Hyalella azteca). MARINE POLLUTION BULLETIN 2017; 124:714-724. [PMID: 28267993 DOI: 10.1016/j.marpolbul.2017.02.067] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2016] [Revised: 02/21/2017] [Accepted: 02/24/2017] [Indexed: 05/08/2023]
Abstract
Inflow of wastewater from upstream causes a large flux of pollutants to enter Kaohsiung Harbor in Taiwan daily. To reveal the ecological risk posed by Kaohsiung Harbor sediments, an ecological metabolomic approach was employed to investigate environmental factors pertinent to the physiological regulation of the marine amphipod Hyalella azteca. The amphipods were exposed to sediments collected from different stream inlets of the Love River (LR), Canon River (CR), Jen-Gen River (JR), and Salt River (SR). Harbor entrance 1 (E1) was selected as a reference site. After 10-day exposure, metabolomic analysis of the Hyalella azteca revealed differences between two groups: {E1, LR, CR} and {JR, SR}. The metabolic pathways identified in the two groups of amphipods were significantly different. The results demonstrated that NMR-based metabolomics can be effectively used to characterize metabolic response related to sediment from polluted areas.
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Affiliation(s)
- K H Chiu
- Department and Graduate Institute of Aquaculture, National Kaohsiung Marine University, Kaohsiung, Taiwan
| | - C D Dong
- Department of Marine Environmental Engineering, National Kaohsiung Marine University, Kaohsiung, Taiwan; Department of Bioinformatics and Medical Engineering, Asia University, Taichung, Taiwan
| | - C F Chen
- Department of Marine Environmental Engineering, National Kaohsiung Marine University, Kaohsiung, Taiwan
| | - M L Tsai
- Department of Seafood Science, National Kaohsiung Marine University, Kaohsiung, Taiwan
| | - Y R Ju
- Department of Marine Environmental Engineering, National Kaohsiung Marine University, Kaohsiung, Taiwan
| | - T M Chen
- Department and Graduate Institute of Aquaculture, National Kaohsiung Marine University, Kaohsiung, Taiwan
| | - C W Chen
- Department of Marine Environmental Engineering, National Kaohsiung Marine University, Kaohsiung, Taiwan.
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28
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Zhao L, Huang Y, Adeleye AS, Keller AA. Metabolomics Reveals Cu(OH) 2 Nanopesticide-Activated Anti-oxidative Pathways and Decreased Beneficial Antioxidants in Spinach Leaves. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2017; 51:10184-10194. [PMID: 28738142 DOI: 10.1021/acs.est.7b02163] [Citation(s) in RCA: 73] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
While the use of nanopesticides in modern agriculture continues to increase, their effects on crop plants are still poorly understood. Here, 4 week old spinach plants grown in an artificial medium were exposed via foliar spray to Cu(OH)2 nanopesticide (0.18 and 18 mg/plant) or Cu ions (0.15 and 15 mg/plant) for 7 days. A gas chromatography-time-of-flight-mass spectrometry metabolomics approach was applied to assess metabolic alterations induced by Cu(OH)2 nanopesticide in spinach leaves. Exposure to Cu(OH)2 nanopesticide and copper ions induced alterations in the metabolite profiles of spinach leaves. Compared to the control, exposure to 18 mg of Cu(OH)2 nanopesticide induced significant reduction (29-85%) in antioxidant or defense-associated metabolites including ascorbic acid, α-tocopherol, threonic acid, β-sitosterol, 4-hydroxybutyric acid, ferulic acid, and total phenolics. The metabolic pathway for ascorbate and aldarate was disturbed in all exposed spinach plants (nanopesticide and Cu2+). Cu2+ is responsible for the reduction in antioxidants and perturbation of the ascorbate and aldarate metabolism. However, nitrogen metabolism perturbation was nanopesticide-specific. Spinach biomass and photosynthetic pigments were not altered, indicating that metabolomics can be a rapid and sensitive tool for the detection og earlier nanopesticide effects. Consumption of antioxidants during the antioxidant defense process resulted in reduction of the nutritional value of exposed spinach.
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Affiliation(s)
- Lijuan Zhao
- Bren School of Environmental Science & Management and ‡Center for Environmental Implications of Nanotechnology, University of California , Santa Barbara, California 93106, United States
| | - Yuxiong Huang
- Bren School of Environmental Science & Management and ‡Center for Environmental Implications of Nanotechnology, University of California , Santa Barbara, California 93106, United States
| | - Adeyemi S Adeleye
- Bren School of Environmental Science & Management and ‡Center for Environmental Implications of Nanotechnology, University of California , Santa Barbara, California 93106, United States
| | - Arturo A Keller
- Bren School of Environmental Science & Management and ‡Center for Environmental Implications of Nanotechnology, University of California , Santa Barbara, California 93106, United States
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29
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Berg SM, Havelund J, Hasler-Sheetal H, Kruse V, Pedersen AJT, Hansen AB, Nybo M, Beck-Nielsen H, Højlund K, Færgeman NJ. The heterozygous N291S mutation in the lipoprotein lipase gene impairs whole-body insulin sensitivity and affects a distinct set of plasma metabolites in humans. J Clin Lipidol 2017; 11:515-523.e6. [PMID: 28502509 DOI: 10.1016/j.jacl.2017.02.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2016] [Revised: 02/03/2017] [Accepted: 02/16/2017] [Indexed: 10/20/2022]
Abstract
BACKGROUND Mutations in the lipoprotein lipase gene causing decreased lipoprotein lipase activity are associated with surrogate markers of insulin resistance and the metabolic syndrome in humans. OBJECTIVE We investigated the hypothesis that a heterozygous lipoprotein lipase mutation (N291S) induces whole-body insulin resistance and alterations in the plasma metabolome. METHODS In 6 carriers of a heterozygous lipoprotein lipase mutation (N291S) and 11 age-matched and weight-matched healthy controls, we examined insulin sensitivity and substrate metabolism by euglycemic-hyperinsulinemic clamps combined with indirect calorimetry. Plasma samples were taken before and after the clamp (4 hours of physiological hyperinsulinemia), and metabolites were measured enzymatically or by gas chromatography-mass spectrometry. RESULTS Compared with healthy controls, heterozygous carriers of a defective lipoprotein lipase allele had elevated fasting plasma levels triglycerides (P < .006), and markedly impaired insulin-stimulated glucose disposal rates (P < .024) and nonoxidative glucose metabolism (P < .015). Plasma metabolite profiling demonstrated lower circulating levels of pyruvic acid and α-tocopherol in the N291S carriers than in controls both before and after stimulation with insulin (all >1.5-fold change and P < .05). CONCLUSION Heterozygous carriers with a defective lipoprotein lipase allele are less insulin sensitive and have increased plasma levels of nonesterified fatty acids and triglycerides. The heterozygous N291S carriers also have a distinct plasma metabolomic signature, which may serve as a diagnostic tool for deficient lipoprotein lipase activity and as a marker of lipid-induced insulin resistance.
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Affiliation(s)
- Sofia Mikkelsen Berg
- Department of Endocrinology, Odense University Hospital, Odense, Denmark; Department of Molecular Biology and Biochemistry, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Odense, Denmark
| | - Jesper Havelund
- Department of Molecular Biology and Biochemistry, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Odense, Denmark
| | - Harald Hasler-Sheetal
- Department of Molecular Biology and Biochemistry, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Odense, Denmark; Department of Biology, University of Southern Denmark, Odense, Denmark; Nordic Center of Earth Evolution, NordCEE, Department of Biology, University of Southern Demark, Odense, Denmark
| | - Vibeke Kruse
- Department of Molecular Biology and Biochemistry, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Odense, Denmark
| | | | | | - Mads Nybo
- Department of Clinical Biochemistry and Pharmacology, Odense University Hospital, Odense, Denmark
| | | | - Kurt Højlund
- Department of Endocrinology, Odense University Hospital, Odense, Denmark; The Section of Molecular Diabetes and Metabolism, Department of Clinical Research & Department of Molecular Medicine, University of Southern Denmark, Odense, Denmark
| | - Nils Joakim Færgeman
- Department of Molecular Biology and Biochemistry, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Odense, Denmark.
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