Microbial Processes Mediating the Evolution of Methylarsine Gases from Dimethylarsenate in Paddy Soils

Pathways and contributions of sulfate reducing-bacteria to arsenic cycling in landfills

Sulfate-reducing bacteria (SRB) are generally found in sanitary landfills and play a role in sulfur (S) and metal/metalloid geochemical cycling. In this study, we investigated the influence of SRB on arsenic (As) metabolic pathways in refuse-derived cultures. The results indicated that SRB promote As(III) methylation and are beneficial for controlling As levels. Heterotrophic and autotrophic SRB showed significant differences during As cycling. In heterotrophic SRB cultures, the As methylation rate increased with As(III) concentration in the medium and reached a peak (85.1%) in cultures containing 25 mg L-1 As(III). Moreover, 4.0-12.6% of SO42- was reduced to S2-, which then reacted with As(III) to form realgar (AsS). In contrast, autotrophic SRB oxidized As(III) to less toxic As(V) under anaerobic conditions. Heterotrophic arsM-harboring SRB, such as Desulfosporosinus, Desulfocurvibacter, and Desulfotomaculum, express As-related genes and are considered key genera for As methylation in landfills. Thiobacillus are the main autotrophic SRB in landfills and can derive energy by oxidizing sulfur compounds and metal(loid)s. These results suggest that different types of SRB drive As methylation, redox reaction, and mineral formation in landfills. These study findings have implications for the management of As pollutants in landfills and other contaminated environments.

On the Existence of Pnictogen Bonding Interactions in As(III) S-Adenosylmethionine Methyltransferase Enzymes

As(III) S-adenosylmethionine methyltransferases, pivotal enzymes in arsenic metabolism, facilitate the methylation of arsenic up to three times. This process predominantly yields trivalent mono- and dimethylarsenite, with trimethylarsine forming in smaller amounts. While this enzyme acts as a detoxifier in microbial systems by altering As(III), in humans, it paradoxically generates more toxic and potentially carcinogenic methylated arsenic species. The strong affinity of As(III) for cysteine residues, forming As(III)-thiolate bonds, is exploited in medical treatments, notably in arsenic trioxide (Trisenox®), an FDA-approved drug for leukemia. The effectiveness of this drug is partly due to its interaction with cysteine residues, leading to the breakdown of key oncogenic fusion proteins. In this study, we extend the understanding of As(III)'s binding mechanisms, showing that, in addition to As(III)-S covalent bonds, noncovalent O⋅⋅⋅As pnictogen bonding plays a vital role. This interaction significantly contributes to the structural stability of the As(III) complexes. Our crystallographic analysis using the PDB database of As(III) S-adenosylmethionine methyltransferases, augmented by comprehensive theoretical studies including molecular electrostatic potential (MEP), quantum theory of atoms in molecules (QTAIM), and natural bond orbital (NBO) analysis, emphasizes the critical role of pnictogen bonding in these systems. We also undertake a detailed evaluation of the energy characteristics of these pnictogen bonds using various theoretical models. To our knowledge, this is the first time pnictogen bonds in As(III) derivatives have been reported in biological systems, marking a significant advancement in our understanding of arsenic's molecular interactions.

Arsenic methylation behavior and microbial regulation mechanisms in landfill leachate saturated zones

Arsenic (As) is a potential contaminant in landfill. As methylation has been considered as a detoxification mechanism to address this problem. In this study, microcosm incubation was used to simulate leachate saturation zone (LSZ) and other landfill zones scenarios to explore the As methylation behavior. The As methylation rate of LSZ is 11.75%, which is slightly higher than that of other zone of landfill (10.87%). However, the difference was greatly increased by the addition of moderate content of As(III), with values of 29.25% in LSZ and 4.61% in other zones. The microbial community structure varied greatly between zones and a higher abundance of arsM was observed in the LSZ, which enhanced As methylation. Based on the annotated As functional genes from the KEGG database, the microbial As methylated pathway was summarized. Higher relative abundances of gst and arsC promoted the formation of more trivalent As substrates, stimulating the methylation behavior for As detoxification in the LSZ. According to microbial arsM contribution analysis, unclassified_p__Gemmatimonadetes, unclassified_p__Actinobacteria, unclassified_o_Hydrogenophilales, and Intrasporangium were the primary As methylation bacteria in the LSZ, while unclassified_f__Chitinophagaceae and unclassified_c_Gammaproteobacteria were the primary contributors in other landfill zones. These results highlight the specific As methylation process in the LSZ, and these insights could improve the control of As contamination in landfill sites.

Inhibition of methanogenesis leads to accumulation of methylated arsenic species and enhances arsenic volatilization from rice paddy soil

Flooded soils are important environments for the biomethylation and subsequent volatilization of arsenic (As), a contaminant of global concern. Conversion of inorganic to methylated oxyarsenic species is thought to be the rate-limiting step in the production and emission of volatile (methyl)arsines. While methanogens and sulfate-reducing bacteria (SRB) have been identified as important regulators of methylated oxyarsenic concentrations in anaerobic soils, the effects of these microbial groups on biovolatilization remain unclear. Here, microcosm and batch incubation experiments with an Arkansas, USA, rice paddy soil were performed in conjunction with metabolic inhibition to test the effects of methanogenic activity on As speciation and biovolatilization. Inhibition of methanogenesis with 2-bromoethanesulfonate (BES) led to the accumulation of methylated oxyarsenic species, primarily dimethylarsinic acid (DMAs(V)), and a four-fold increase in As biovolatilization compared to a control soil. Our results support a conceptual model that methanogenic activity suppresses biovolatilization by enhancing As demethylation rates. This work refines understanding of biogeochemical processes regulating As biovolatilization in anaerobic soil environments, and extends recent insights into links between methanogenesis and As metabolism to soils from the mid-South United States rice production region.

The mechanism of polystyrene microplastics to affect arsenic volatilization in arsenic-contaminated paddy soils

Different concentrations and sizes of polystyrene microplastics (PS-MP) were added to low (25.9) and high (56.8) mg kg^-1 As-contaminated soil to investigate the effects of PS-MP on soil As volatilization. Either S₁ (10 μm) or S₂ (0.1-1 μm) PS-MP was added to As-contaminated soil at 0.8%, which increased As volatilization by 13.7% and 7.4% in low As-contaminated soil; and 21.8% and 16.5% in high As-contaminated soil, respectively. The addition of PS-MP reduced the water-soluble (WS) As content, increased the non-specifically-sorbed (NSS), specifically-sorbed (SS) As content, soil catalase (CAT) and urease (UE) activities. The abundance of Proteobacteria and Firmicutes showed opposite trends to As volatilization, while the abundance of Bacteroidetes and arsM gene expression exhibited similar variability to As volatilization over the 7-week experiment. Therefore, we postulate that in As-contaminated soil, As volatilization was enhanced in the presence of PS-MP due to two possible mechanisms: 1) PS-MP affects the abundance of Proteobacteria, Firmicutes, Bacteroidetes, and arsM gene in soil; 2) PS-MP increases As volatilization via reducing soil nutrient and increasing the content of SS As. Our results highlighted the importance of investigating impacts of microplastics on the volatility of specific contaminants to implement effective environmental remediation strategies in polluted farmlands.

Si-induced DMA desorption is not the driver for enhanced DMA availability after Si addition to flooded soils

Silicon (Si) addition to flooded rice paddy soil tends to decrease grain inorganic arsenic (iAs) and increase grain dimethylarsinic acid (DMA) concentrations, but the mechanism for the increase in plant-available DMA is unresolved. It has been suggested that Si displaces DMA from soil solids, rendering it plant-available; however, we hypothesize that Si desorbs primarily iAs from soil solids, which stimulates methylation to DMA. We added silicic acid to a contaminated paddy soil and a flooded upland soil that had been historically contaminated with lead arsenate in a batch incubation experiment, and measured changes in solid-phase As speciation, porewater As speciation, and As-methylating microbial (AsMM) abundance over time. We found that DMA was not detectable in soils prior to the start of the experiment nor throughout the experiment, so it comprised a trace amount of total soil As. Upon Si addition to paddy soil, total As increased in porewater following Si spike and this increase was mainly due to iAs desorption, and an order of magnitude less MMA and DMA was desorbed. The upland soil transitioned to reducing conditions throughout the experiment, but when they were achieved, iAs was desorbed first and this was followed by an increase of MMA and then DMA compared to control soils. Total microbial community abundance increased over the course of the experiments and arsM gene abundance increased from initial conditions, but did not differ between treatments. In the paddy soil, the ratio of arsM:16S gene abundance decreased from the initial conditions, but it increased in the upland soil with historic As contamination. These results suggest that Si-induced desorption of DMA is small and likely does not explain the increases of plant-available DMA upon Si fertilization in prior work. Likely, Si-induced iAs desorption drives microorganisms to methylate iAs, but degree of methylation will differ between soils.

Silver Sulfide Nanoparticles Reduce Nitrous Oxide Emissions by Inhibiting Denitrification in the Earthworm Gut

The accumulation of Ag₂S in agricultural soil via application of Ag-containing sludge potentially affects the functioning of soil microorganisms and earthworms (EWs) due to the strong antimicrobial properties of Ag. This study examined the effects of Ag₂S nanoparticles (Ag₂S-NPs) on the EW-mediated (Eisenia fetida and Pontoscolex corethrurus) soil N cycle. We used 16S rRNA gene-based sequencing and quantitative polymerase chain reaction to examine the bacterial community and nitrification/denitrification-related gene abundance. The presence of either EWs or Ag significantly increased denitrification and N₂O emissions. However, the addition of Ag₂S to EW-inhabited soil reduced N₂O emissions by 14-33%. Furthermore, Ag₂S caused a low-dose stimulation but a high-dose inhibition to N₂O flux from the EW gut itself. Accordingly, an increase in Ag in the EW gut caused a decrease in the relative abundance of denitrifiers in both the soil and the gut, especially for the dominant genus Bacillus. Ag₂S also decreased the copy numbers of nitrification gene (nxrB) and denitrification genes (napA, nirS, and nosZ) in EW gut, leading to the observed decrease in N₂O emissions. Collectively, applying Ag₂S-containing sludge disturbs the denitrification function of the EW gut microbiota and the cycling of N in soil-based systems.

Microbial Arsenic Methylation in Soil and Uptake and Metabolism of Methylated Arsenic in Plants: A Review

Arsenic (As) poses a risk to the human health in excess exposure and microbes play an important role in the toxicity of As. Arsenic methylation mediated by microbes is a key driver of As toxicity in the environment and this paper reviews the role of microbial arsenic methylation and volatilization in the biogeochemical cycle of arsenic. In specific, little is presently known about the molecular mechanism and gene characterization of arsenic methylation. The uptake of methylated arsenic in plants is influenced by microbial arsenic methylation in soil, thus enhancing the volatilization of methylated arsenic is a potential mitigation point for arsenic mobility and toxicity in the environment. On the other hand, the potential risk of methylated arsenic on organisms is also discussed. And the directions for future research, theoretical reference for the control and remediation of arsenic methylation, are presented.

Sulfate-reducing bacteria and methanogens are involved in arsenic methylation and demethylation in paddy soils

Microbial arsenic (As) methylation and demethylation are important components of the As biogeochemical cycle. Arsenic methylation is enhanced under flooded conditions in paddy soils, producing mainly phytotoxic dimethylarsenate (DMAs) that can cause rice straighthead disease, a physiological disorder occurring widely in some rice growing regions. The key microbial groups responsible for As methylation and demethylation in paddy soils are unknown. Three paddy soils were incubated under flooded conditions. DMAs initially accumulated in the soil porewater, followed by a rapid disappearance coinciding with the production of methane. The soil from a rice straighthead disease paddy field produced a much larger amount of DMAs than the other two soils. Using metabolic inhibition, quantification of functional gene transcripts, microbial enrichment cultures and 13C-labeled DMAs, we show that sulfate-reducing bacteria (SRB) and methanogenic archaea are involved in As methylation and demethylation, respectively, controlling the dynamics of DMAs in paddy soils. We present a model of As biogeochemical cycle in paddy soils, linking the dynamics of changing soil redox potential with arsenite mobilization, arsenite methylation and subsequent demethylation driven by different microbial groups. The model provides a basis for controlling DMAs accumulation and incidence of straighthead disease in rice.

Water management impacts the soil microbial communities and total arsenic and methylated arsenicals in rice grains

The bioavailability of the metalloid arsenic (As) in paddy soil is controlled by microbial cycling of As and other elements such as iron (Fe) and sulfur (S), which are strongly influenced by water management in paddy fields. In this study, we evaluated how water management affects As bioavailability by growing rice plants in a geogenic As-contaminated soil. We determined As speciation in soil porewater and the diversity of the associated microbial community. Continuous flooding enhanced the release of Fe and As and increased arsenite (As(III)) and methylated As species concentrations in the rice grain compared with aerobic treatment. Total inorganic and organic As in the grain was 84% and 81% lower, respectively, in the aerobic treatment compared with the continuous flooding treatment. The amounts of Fe(III)-reducing bacteria (FeRB) increased in the flooded rhizosphere soil. The abundance of FeRB in the soil correlated with the dissolution of Fe and As. Among the As-transformation genes quantified, the aioA gene for As(III) oxidation and arsM gene for As(III) methylation were most abundant. The arsM copy number correlated positively with the levels of dsrB (dissimilatory (bi) sulfite reductase β-subunit), suggesting that dissimilatory sulfate-reducing bacteria (SRB) may play an important role in dimethylarsenate (DMAs(V)) production in soil. Our results show that decreased populations of rhizosphere FeRB and SRB contributed to a lower bioavailability of As, and decreased production of methylated arsenicals under oxic conditions.

A methyltransferase gene from arbuscular mycorrhizal fungi involved in arsenic methylation and volatilization

Arbuscular mycorrhizal fungi (AMF), ubiquitous symbiotic fungi associated with the majority of terrestrial plants, were demonstrated to play important roles in arsenic (As) translocation and transformation in the plant-soil continuum, and substantially influence plant As tolerance. However, the direct involvement of AMF in As methylation and volatilization and their molecular mechanisms remain unsolved. Here, an arsenite methyltransferase gene RiMT-11 was identified and characterized from AM fungus Rhizophagus irregularis. Heterologous expression of RiMT-11 enhanced arsenite resistance of E. coli (Δars) through methylating As into monomethylarsonic acid (MMA), dimethylarsinic acid (DMA) and ultimately volatile trimethyl arsine (TMAs). In a two-compartment in vitro monoxenic cultivation system, methylated and volatile As were also detected from AM symbioses with arsenate addition, accompanied by strong up-regulation of RiMT-11 expression in extraradical hyphae. The present study provided direct evidence and illustrated an underlying mechanism of As methylation and volatilization by AMF, leading to a deeper insight into the role of AMF in As biogeochemical cycling.