Halides Held by Bifurcated Chalcogen–Hydrogen Bonds. Effect of μ(S,N–H)Cl Contacts on Dimerization of Cl(carbene)PdII Species

Coupling of Thiazole-2-Amines with Isocyanide Ligands in bis-(Isocyanide) Platinum Complex: A New Type of Reactivity

The treatment of cis-[PtCl2(XylNC)2] with thiazol-2-amines in a 2:1 ratio leads to a regioisomeric mixture of two binuclear complexes. These regioisomers are products of kinetic and thermodynamic control capable of regioisomerization. When the same reaction is carried out with a 5-fold excess of thiazol-2-amine, the nucleophile is able to react with the in situ-formed binuclear platinum(II) complexes, yielding a new type of bis-carbene platinum species. All new isolated compounds were characterized by 1H, 13C{1H}, and 195Pt{1H} NMR spectroscopy, high-resolution ESI-MS, and single-crystal X-ray diffraction.

Facile Access to 2-Selenoxo-1,2,3,4-tetrahydro-4-quinazolinone Scaffolds and Corresponding Diselenides via Cyclization between Methyl Anthranilate and Isoselenocyanates: Synthesis and Structural Features

A practical method for the synthesis of 2-selenoxo-1,2,3,4-tetrahydro-4-quinazolinone was reported. The latter compounds were found to undergo facile oxidation with H2O2 into corresponding diselenides. Novel organoselenium derivatives were characterized by the 1H, 77Se, and 13C NMR spectroscopies, high-resolution electrospray ionization mass spectrometry, IR, elemental analyses (C, H, N), and X-ray diffraction analysis for several of them. Novel heterocycles exhibited multiple remarkable chalcogen bonding (ChB) interactions in the solid state, which were studied theoretically.

Sterically Hindered Tellurium(IV) Catecholate as a Lewis Acid

Sterically hindered tellurium catecholate Te(Cat³⁶)₂ (Cat³⁶ = 3,6-di-tert-butyl-catecholate) was synthesized with the reaction of amorphous Te with 3,6-di-tert-butyl-o-benzoquinone. Adducts of Te(Cat³⁶)₂ with various O- and N-donors were isolated and characterized by means of single-crystal X-ray diffraction along with IR, UV-vis, and NMR (¹H, ¹³C, and ¹²⁵Te) spectroscopies. In the crystal structure of the adduct with 2,2'-bipyridine (bipy), the unprecedented μ-κ²N,N':κ²N,N'-bridging coordination mode of bipy was observed. Various intermolecular interactions Te...O, Te...N, and Te...C in adducts were analyzed using density functional theory calculations and quantum theory of atoms in molecules analysis. The estimated strength for appropriate short contacts varies from 0.9 to 5.3 kcal/mol, and they are attractive and purely non-covalent.

Exploring Supramolecular Assembly Space of Cationic 1,2,4-Selenodiazoles: Effect of the Substituent at the Carbon Atom and Anions

Chalcogenodiazoles have been intensively studied in recent years in the context of their supramolecular chemistry. In contrast, the newly discovered cationic 1,2,4-selenodiazole supramolecular building blocks, which can be obtained via coupling between 2-pyridylselenyl halides and nitriles, are virtually unexplored. A significant advantage of the latter is their facile structural tunability via the variation of nitriles, which could allow a fine tuning of their self-assembly in the solid state. Here, we explore the influence of the substituent (which derives from the nitrile) and counterions on the supramolecular assembly of cationic 1,2,4-selenodiazoles via chalcogen bonding.

Experimental and Computational Tuning of Metalla-N-Heterocyclic Carbenes at Palladium(II) and Platinum(II) Centers

Palladium(II) and platinum(II) complexes featuring metalla-N-heterocyclic carbenes (7–12) were synthesised via metal-mediated coupling between equimolar cis-[MCl2(CNR)2] (R = 2,6-Me2C6H3 (Xyl), 2,4,6-Me3C6H3 (Mes)] and 2-aminopyridine or 2-aminopyrazine. Thiocyanate complexes 13–18 with...

Metal-Involving Chalcogen Bond. The Case of Platinum(II) Interaction with Se/Te-Based σ-Hole Donors

Platinum(II) complexes exhibiting an expressed d_z²-nucleophilicity of the positively charged metal centers, namely, [Pt(ppy)(acac)] (1; acacH is acetylacetone; ppyH is 2-Ph-pyridine) and [Pt(ppy)(tmhd)] (2; tmhdH is 2,2,6,6-tetramethylheptanedione-3,5), were cocrystallized with the chalcogen bond donors (4-NC₅F₄)₂Ch (Ch = Se, Te) to form two isostructural cocrystals 1·¹/₂(4-NC₅F₄)₂Ch, and 2·²/₃(4-NC₅F₄)₂Se and 2·(4-NC₅F₄)₂Te. The X-ray data for these cocrystals and appropriate theoretical DFT calculations (PBE0-D3BJ) allowed the recognition of the metal-involving chalcogen bond, namely, Ch···d_z²-Pt^II (its energy spans from -7 to -12 kcal/mol). In 1·¹/₂(4-NC₅F₄)₂Ch, Ch···d_z²-Pt^II bonding is accompanied by the C···d_z²-Pt^II interaction, representing a three-center bifurcate, whereas in 2·(4-NC₅F₄)₂Te the chalcogen bond Te···d_z²-Pt^II is purely two-centered and is stronger than that in 1·¹/₂(4-NC₅F₄)₂Ch because of more efficient orbital overlap. The association of 2 with (4-NC₅F₄)₂Te and the structure of the formed adduct in CDCl₃ solutions was studied by using ¹H, ¹³C, ¹⁹F, ¹⁹⁵Pt, ¹²⁵Te NMR, ¹⁹F-¹H HOESY, and diffusion NMR methods. The ¹⁹⁵Pt and ¹²⁵Te NMR titration and the isothermal titration calorimetry results revealed a 1:1 association of 2 with (4-NC₅F₄)₂Te.

π-π Noncovalent Interaction Involving 1,2,4- and 1,3,4-Oxadiazole Systems: The Combined Experimental, Theoretical, and Database Study

A series of N-pyridyl ureas bearing 1,2,4- (1a, 2a, and 3a) and 1,3,4-oxadiazole moiety (1b, 2b, 3b) was prepared and characterized by HRMS, 1H and 13C NMR spectroscopy, as well as X-ray diffraction. The inspection of the crystal structures of (1-3)a,b and the Hirshfeld surface analysis made possible the recognition of the (oxadiazole)···(pyridine) and (oxadiazole)···(oxadiazole) interactions. The presence of these interactions was confirmed theoretically by DFT calculations, including NCI analysis for experimentally determined crystal structures as well as QTAIM analysis for optimized equilibrium structures. The preformed database survey allowed the verification of additional examples of relevant (oxadiazole)···π interactions both in Cambridge Structural Database and in Protein Data Bank, including the cocrystal of commercial anti-HIV drug Raltegravir.

A quantum crystallographic approach to short hydrogen bonds

In this work we use high-resolution synchrotron X-ray diffraction for electron density mapping, in conjunction with ab initio modelling, to study short O-H⋯O and O+-H⋯O- hydrogen bonds whose behaviour is known to be tuneable by temperature. The short hydrogen bonds have donor-acceptor distances in the region of 2.45 Å and are formed in substituted urea and organic acid molecular complexes of N,N'-dimethylurea oxalic acid 2 : 1 (1), N,N-dimethylurea 2,4-dinitrobenzoate 1 : 1 (2) and N,N-dimethylurea 3,5-dinitrobenzoic acid 2 : 2 (3). From the combined analyses, these complexes are found to fall within the salt-cocrystal continuum and exhibit short hydrogen bonds that can be characterised as both strong and electrostatic (1, 3) or very strong with a significant covalent contribution (2). An additional charge assisted component is found to be important in distinguishing the relatively uncommon O-H⋯O pseudo-covalent interaction from a typical strong hydrogen bond. The electron density is found to be sensitive to the extent of static proton transfer, presenting it as a useful parameter in the study of the salt-cocrystal continuum. From complementary calculated hydrogen atom potentials, we attribute changes in proton position to the molecular environment. Calculated potentials also show zero barrier to proton migration, forming an 'energy slide' between the donor and acceptor atoms. The better fundamental understanding of the short hydrogen bond in the 'zone of fluctuation' presented in a salt-cocrystal continuum, enabled by studies like this, provide greater insight into their related properties and can have implications in the regulation of pharmaceutical materials.

The competition and cooperativity of hydrogen/halogen bond and π-hole bond involving the heteronuclear ethylene analogues

The noncovalent interactions involving heteronuclear ethylene analogues H₂ CEH₂ (E = Si, Ge and Sn) have been studied by the Møller-Plesset perturbation theory to investigate the competition and cooperativity between the hydrogen/halogen bond and π-hole bond. H₂ CEH₂ has a dual role of being a Lewis base and acid with the region of π-electron accumulation above the carbon atom and the region of π-electron depletion (π-hole) above the E atom to participate in the NCX···CE (X = H and Cl) hydrogen/halogen bond and CE···NCY (Y = H, Cl, Li and Na) π-hole bond, respectively. When HCN/ClCN interacts with H₂ CEH₂ by two sites, the strength of hydrogen bond/halogen bond is stronger than that of π-hole bond. The π-hole bond becomes obviously stronger when the metal substituent of YCN (Y = Li and Na) interacting with H₂ CEH₂ , showing the character of partial covalent, its strength is much greater than that of hydrogen/halogen bond. In the ternary complexes, both hydrogen/halogen bond and π-hole bond are simultaneously strengthened compared to those in the binary complexes, especially in the systems containing alkali metal.

Luminescent cyclometalated platinum(ii) complexes with acyclic diaminocarbene ligands: structural, photophysical and biological properties

Four new cyclometalated Pt(ii) complexes bearing acyclic diaminocarbene (ADC) ligands, [Pt(C^N)Cl{C(NHXyl)(NHR)}] [C^N = 2,6-difluorophenylpyridine (dfppy), phenylquinoline (pq); R = Pr 3a, 4a, CH₂Ph 3b, 4b], were prepared by the nucleophilic attack on the isocyanide [Pt(C^N)Cl(CNXyl)] (C^N = dfppy 1, pq 2) by the corresponding amine RNH₂ (R = Pr, CH₂Ph). Complexes 3 show in their ¹H NMR spectra in CDCl₃ a notable concentration dependence, with a clear variation of the δ_H (NHXyl) signal, suggesting an assembling process implying donor-acceptor NH_XylCl bonding, also supported by 1D-PGSE (Pulse Field Gradient Spin Echo) and 2D-DOSY (Diffusion Ordered Spectroscopy) NMR experiments in solution and X-ray diffraction studies. The intermolecular interactions in compounds 3a and 3b were studied by using Hirshfeld surface analysis and Non-Covalent Interaction (NCI) methods on their X-ray structures. Their photophysical properties were investigated by absorption and emission spectroscopies and also by TD-DFT calculations performed on 3a and 4b. These complexes show green (3) or orange (4) phosphorescence, attributed to a mixed ³IL/³MLCT excited state. The carbene ligand does not affect the emission maxima but it produces an increase of the quantum yields in relation to the isocyanide in the precursors. In fluid solutions, the emission is not concentration-dependent, but the complexes may show aggregation induced emission as detailed for complexes 3a and 4a. In addition, cytotoxicity studies in the human cell lines A549 (lung carcinoma) and HeLa (cervix carcinoma) showed good activity for these complexes and 3a, 3b and 4a exhibit a strong effect on DNA electrophoretic mobility. To the best of our knowledge, compounds 3 and 4 represent the first examples of cycloplatinated complexes bearing acyclic diamino carbenes with antiproliferative properties.

Trinuclear molybdenum clusters with sulfide bridges as potential anionic receptors via chalcogen bonding

Trinuclear Mo₃S₇ cluster complexes with sulfide bridges as potential anionic receptors due to chalcogen bonding.

Geometrical and energetic characteristics of Se⋯Se interactions in crystal structures of organoselenium molecules

Combined crystallographic and quantum chemical study was performed to reveal the nature of selenium–selenium interactions in the crystal structures of organoselenium compounds.

PdII- and PtII-mediated coupling of aryl isocyanides with N-heterocyclic thiones

A Pd^II- and Pt^II-mediated reaction of aryl isocyanides with N-heterocyclic thiones results in a previously undescribed type of regioselectivity for ambident nucleophile addition to coordinated isocyanides.

One-Dimensional Diiodine-Iodobismuthate(III) Hybrids Cat3{[Bi2I9](I2)3}: Syntheses, Stability, and Optical Properties

One-dimensional iodine-rich iodobismuthates(III), Cat₃{[Bi₂I₉](I₂)₃} [Cat = 1,4-MePy (1) and 1-EtBMAP (2)], feature the highest amount of "trapped" diiodine units in polyhalogen-halometalates of p-block elements. Both complexes have narrow optical band gaps (1.55 and 1.63 eV, respectively) and moderate thermal stability.

Non-Covalent Interactions in Coordination and Organometallic Chemistry

The problem of non-covalent interactions in coordination and organometallic compounds is a hot topic in modern chemistry, material science, crystal engineering and related fields of knowledge. Researchers in various fields of chemistry and other disciplines (physics, crystallography, computer science, etc.) are welcome to submit their works on this topic for our Special Issue “Non-Covalent Interactions in Coordination and Organometallic Chemistry”. The aim of this Special Issue is to highlight and overview modern trends and draw the attention of the scientific community to various types of non-covalent interactions in coordination and organometallic compounds. In this editorial, I would like to briefly highlight the main successes of our research group in the field of the fundamental study of non-covalent interactions in coordination and organometallic compounds over the past 5 years.

New Crystal Forms for Biologically Active Compounds. Part 2: Anastrozole as N-Substituted 1,2,4-Triazole in Halogen Bonding and Lp-π Interactions with 1,4-Diiodotetrafluorobenzene

For an active pharmaceutical ingredient, it is important to stabilize its specific crystal polymorph. If the potential interconversion of various polymorphs is not carefully controlled, it may lead to deterioration of the drug’s physicochemical profile and, ultimately, its therapeutic efficacy. The desired polymorph stabilization can be achieved via co-crystallization with appropriate crystallophoric excipients. In this work, we identified an opportunity for co-crystallization of anastrozole (ASZ), a well-known aromatase inhibitor useful in second-line therapy of estrogen-dependent breast cancer, with a classical XB donor, 1,2,4,5-tetrafluoro-3,6-diiodobenzene (1,4-FIB). In the X-ray structures of ASZ·1.5 (1,4-FIB) co-crystal, different non-covalent interactions involving hydrogen and halogen atoms were detected and studied by quantum chemical calculations and QTAIM analysis at the ωB97XD/DZP-DKH level of theory.

The (Dioximate)NiII/I2 System: Ligand Oxidation and Binding Modes of Triiodide Species

Reinvestigation of (o-benzoquinonedioximate)₂Ni/I₂ systems demonstrated that the reaction itself and also the crystallization conditions dramatically affect the identity of generated species. Crystallization (CHCl₃, 20-25 °C) of the nickel(II) dioximate complex [Ni(bqoxH)₂] (bqoxH₂ = o-benzoquinonedioxime) with I₂ in the 1:(1-10) molar ratios of the reactants led to several (o-benzoquinonedioximate)₂Ni derivatives and/or iodine adducts [Ni(I)(bqoxH)(bqoxH₂)]·³/₂I₂, [Ni(I₃)(bqoxH)(bqoxH₂)]·[Ni(bqoxH)₂], and [Ni(I₃)(bqox^•-)(bqoxH₂)]·I₂; the latter one, featuring the anion-radical bqox^•- ligand, is derived from the formal (-2H⁺/1e^-)-oxidation of bqoxH₂. In these three adducts, various types of noncovalent interactions were identified experimentally and their existence was supported theoretically. The [Ni(I₃)(bqox^•-)(bqoxH₂)]·I₂ adduct exhibits simultaneous semicoordination and coordination patterns of the triiodide ligand; this is the first recognition of the semicoordination of any polyiodide ligand to a metal center. The semicoordination noncovalent contact Ni···I₃ (3.7011(10) Å) is substantially longer that the Ni-I₃ coordination bond (2.8476(9) Å), and the difference in energies between these two types of linkages is 8-12 kcal/mol.

[{AgL}2Mo8O26]n– complexes: a combined experimental and theoretical study

Two sets of silver–molybdate complexes with L = XR₃ (X = P, As, Sb; R₃ = Ph₃, Ph₂Py) and functionalized pyridine-based ligands have been studied with different techniques.

Substituent-dependent reactivity of triarylantimony(iii) toward I2: isolation of [Ar3SbI]+ salt

The outcome of reactions of triarylantimony (Ar₃Sb) with diiodine in benzene is strongly affected by the identity of the substituents.

(Isocyano group)⋯lone pair interactions involving coordinated isocyanides: experimental, theoretical and CSD studies

Both carbon and nitrogen centers in the coordinated isocyano group are capable of acting as a π-hole donor toward lone pairs.

Water soluble palladium(ii) and platinum(ii) acyclic diaminocarbene complexes: solution behavior, DNA binding, and antiproliferative activity

Water soluble Pd(ii) and Pt(ii)–ADC species synthesized via the metal-mediated coupling of isocyanides and 1,2-diaminobenzene have demonstrated antitumor potential.

New Crystal Forms for Biologically Active Compounds. Part 1: Noncovalent Interactions in Adducts of Nevirapine with XB Donors

Stabilization of specific crystal polymorphs of an active pharmaceutical ingredient is crucial for preventing uncontrollable interconversion of various crystalline forms, which affects physicochemical properties as well as physiological activity. Co-crystallization with various excipients is an emerging productive way of achieving such stabilization in the solid state. In this work, we identified an opportunity for co-crystallization of antiviral drug nevirapine (NVP) with a classical XB donor, 1,2,4,5-tetrafluoro-3,6-diiodobenzene (1,4-FIB), as well as 1,3-diiodobenzene (1,3-DIB), which has been seldom employed as an XB donor to date. In the X-ray structures of NVP·1,4-FIB and NVP·1,3-DIB co-crystals, different hydrogen and halogen bonding modes were detected and further investigated via DFT calculations as well as topological analysis of the electron density distribution within the framework of the QTAIM method at the M06/DZP-DKH level of theory. Estimated energies of these supramolecular contacts vary from 0.6 to 5.7 kcal/mol.

Stable and Persistent Acyclic Diaminocarbenes with Cycloalkyl Substituents and Their Transformation to β-Lactams by Uncatalysed Carbonylation with CO

Four new acyclic diaminocarbenes (ADACs), viz. [(cyclo-C_n H_2n-1 )₂ N]₂ C (n=5-7) and iPr₂ N-C-N(cyclo-C₆ H₁₁ )₂ , were synthesised by reacting the corresponding formamidinium hexafluorophosphates with NaN(SiMe₃ )₂ . Their nucleophilicities and electrophilicities were respectively judged from the ¹ J_CH values determined for the N₂ CH unit of the corresponding formamidinium cations and from the ⁷⁷ Se NMR chemical shifts of the selenourea derivatives obtained from the reaction of elemental selenium with the corresponding ADACs. An ambiphilic profile essentially identical to that of the "Alder carbene" (iPr₂ N)₂ C was found in each case. Similar to the latter carbene, the new ADACs undergo a well-defined thermal decomposition by β-fragmentation, affording an alkene and a formamidine. The stabilities of [(cyclo-C_n H_2n-1 )₂ N]₂ C depend strongly on the value of n, following the order 6>5>7, with the latter congener being too unstable for isolation. [(cyclo-C₆ H₁₁ )₂ N]₂ C shows no thermal decomposition at room temperature in solution and is thus significantly more stable than (iPr₂ N)₂ C. The stability of iPr₂ N-C-N(cyclo-C₆ H₁₁ )₂ is intermediate between that of (iPr₂ N)₂ C and [(cyclo-C₆ H₁₁ )₂ N]₂ C, its β-fragmentation selectively affording propene and iPrN=CH-N(cyclo-C₆ H₁₁ )₂ . [(cyclo-C_n H_2n-1 )₂ N]₂ C (n=5-7) react readily with CO under mild conditions, selectively affording trisubstituted spirocyclic β-lactam derivatives with an antimicrobial activity spectrum similar to that of penicillin G.

Recognition of the π-hole donor ability of iodopentafluorobenzene – a conventional σ-hole donor for crystal engineering involving halogen bonding

This study is the first recognition of iodopentafluorobenzene's π-hole donor ability.

Halogen bonding-assisted assembly of bromoantimonate(v) and polybromide-bromoantimonate-based frameworks

Halogen bonding within bromo- and polybromoantimonates(v).

Intermolecular hydrogen bonding H···Cl in crystal structure of palladium(II)-bis(diaminocarbene) complex

The reaction of bis(isocyanide)palladium complex cis-[PdCl2(CNXyl)2] (Xyl=2,6-Me2C6H3) with excess of 4,5-dichlorobenzene-1,2-amine in a C2H4Cl2/MeOH mixture affords monocationic bis(diaminocarbene) complex cis-[PdClC{(NHXyl)=NHC6H2Cl2 NH2}{C(NHXyl)=NHC6H2Cl2NH2}]Cl (3) in moderate yield (42%). Complex 3 exists in the solid phase in the H-bonded dimeric associate of two single charged organometallic cations and two chloride anions according to X-ray diffraction data. The Hirshfeld surface analysis for the X-ray structure of 3 reveals that the crystal packing is determined primarily by intermolecular contacts H–Cl, H–H, and H–C. The intermolecular hydrogen bonds N–H···Cl and C–H···Cl in the H-bonded dimeric associate of 3 were studied by DFT calculations and topological analysis of the electron density distribution within the framework of QTAIM method, and estimated energies of these supramolecular contacts vary from 1.6 to 9.1 kcal/mol. Such non-covalent bonding means that complex 3 is an anionic receptor for the chloride anions.