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For: Altun A, Neese F, Bistoni G. HFLD: A Nonempirical London Dispersion-Corrected Hartree-Fock Method for the Quantification and Analysis of Noncovalent Interaction Energies of Large Molecular Systems †. J Chem Theory Comput 2019;15:5894-5907. [PMID: 31538779 DOI: 10.1021/acs.jctc.9b00425] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Thorwart T, Greb L. Structural Flexibility is a Decisive Factor in FLP Dihydrogen Cleavage with Tetrahedral Lewis Acids: A Silane Case Study. Chemistry 2024;30:e202401912. [PMID: 38856095 DOI: 10.1002/chem.202401912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Revised: 06/07/2024] [Accepted: 06/10/2024] [Indexed: 06/11/2024]
2
Bistoni G, Altun A, Wang Z, Neese F. Local Energy Decomposition Analysis of London Dispersion Effects: From Simple Model Dimers to Complex Biomolecular Assemblies. Acc Chem Res 2024;57:1411-1420. [PMID: 38602396 PMCID: PMC11080063 DOI: 10.1021/acs.accounts.4c00085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 04/04/2024] [Accepted: 04/04/2024] [Indexed: 04/12/2024]
3
Rummel L, Schreiner PR. Advances and Prospects in Understanding London Dispersion Interactions in Molecular Chemistry. Angew Chem Int Ed Engl 2024;63:e202316364. [PMID: 38051426 DOI: 10.1002/anie.202316364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Revised: 12/03/2023] [Accepted: 12/05/2023] [Indexed: 12/07/2023]
4
Iwanek W. Complexes of resorcin[4]arene with secondary amines: synthesis, solvent influence on "in-out" structure, and theoretical calculations of non-covalent interactions. Beilstein J Org Chem 2023;19:1525-1536. [PMID: 37799176 PMCID: PMC10548251 DOI: 10.3762/bjoc.19.109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 09/20/2023] [Indexed: 10/07/2023]  Open
5
Sachin AR, Gopakumar G, Brahmananda Rao CVS. Accurate Evaluation of Dispersion Energies at Coupled Cluster Level to Understand the Substituent Effects in Am(III) and Eu(III) Complexes. J Phys Chem A 2023;127:6722-6731. [PMID: 37540583 DOI: 10.1021/acs.jpca.3c03027] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/06/2023]
6
Merz GE, Chalkley MJ, Tan SK, Tse E, Lee J, Prusiner SB, Paras NA, DeGrado WF, Southworth DR. Stacked binding of a PET ligand to Alzheimer's tau paired helical filaments. Nat Commun 2023;14:3048. [PMID: 37236970 PMCID: PMC10220082 DOI: 10.1038/s41467-023-38537-y] [Citation(s) in RCA: 18] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Accepted: 05/05/2023] [Indexed: 05/28/2023]  Open
7
Pooventhiran T, Alzahrani AYA, Rajimon K, Thomas R. Solvent interaction and dynamics of neurotransmitters ‐aspartic acid and ‐glutamic acid with water and ethanol. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
8
Schümann JM, Ochmann L, Becker J, Altun A, Harden I, Bistoni G, Schreiner PR. Exploring the Limits of Intramolecular London Dispersion Stabilization with Bulky Dispersion Energy Donors in Alkane Solution. J Am Chem Soc 2023;145:2093-2097. [PMID: 36688409 DOI: 10.1021/jacs.2c13301] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
9
Thomas R, Pooventhiran T, Bakht MA, Alzahrani AY, Salem MA. Study of interaction between different solvents and neurotransmitters dopamine, l-adrenaline, and l-noradrenaline using LED, QTAIM and AIMD. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
10
Tabassum S, Thangaiyan P, Govindaraju S, Daniel NK, Thomas R. Pyrazole Derivative Containing Naphthalene Moiety: Cytotoxocity (Breast and Cervical Cancer), Antibacterial and Antifungal Studies Using Experimental and Theoretical Tools. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2149564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
11
Hill NDD, Lilienthal E, Bender CO, Boeré RT. Accurate Crystal Structures of C12H9CN, C12H8(CN)2, and C16H11CN Valence Isomers Using Nonspherical Atomic Scattering Factors. J Org Chem 2022;87:16213-16229. [DOI: 10.1021/acs.joc.2c01706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
12
Tilly DP, Žabka M, Vitorica-Yrezabal I, Sparkes HA, Pridmore N, Clayden J. Supramolecular interactions between ethylene-bridged oligoureas: nanorings and chains formed by cooperative positive allostery. Chem Sci 2022;13:13153-13159. [PMID: 36425488 PMCID: PMC9667931 DOI: 10.1039/d2sc04716k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Accepted: 10/24/2022] [Indexed: 12/02/2022]  Open
13
Thomas R, Pooventhiran T. Study of the dynamics of the Interaction of glycine and GABA with water and ethanol using theoretical tools. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120721] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
14
Understanding the solvation dynamics of metformin in water using theoretical tools. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
15
Evidence of significant non-covalent interactions in the solution of Levetiracetam in water and methanol. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119289] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
16
Poskin TJ, Piscelli BA, Yoshida K, Cordes DB, Slawin AMZ, Cormanich RA, Yamada S, O'Hagan D. Janus faced fluorocyclohexanes for supramolecular assembly: synthesis and solid state structures of equatorial mono-, di- and tri alkylated cyclohexanes and with tri-axial C-F bonds to impart polarity. Chem Commun (Camb) 2022;58:7968-7971. [PMID: 35758098 DOI: 10.1039/d2cc03010a] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
17
Walker PJ, Zhao T, Haslam AJ, Jackson G. Ab initio development of generalized Lennard-Jones (Mie) force fields for predictions of thermodynamic properties in advanced molecular-based SAFT equations of state. J Chem Phys 2022;156:154106. [PMID: 35459299 DOI: 10.1063/5.0087125] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
18
Altun A, Neese F, Bistoni G. Open-Shell Variant of the London Dispersion-Corrected Hartree-Fock Method (HFLD) for the Quantification and Analysis of Noncovalent Interaction Energies. J Chem Theory Comput 2022;18:2292-2307. [PMID: 35167304 PMCID: PMC9009084 DOI: 10.1021/acs.jctc.1c01295] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
19
Prasad VK, Otero-de-la-Roza A, DiLabio GA. Fast and Accurate Quantum Mechanical Modeling of Large Molecular Systems Using Small Basis Set Hartree-Fock Methods Corrected with Atom-Centered Potentials. J Chem Theory Comput 2022;18:2208-2232. [PMID: 35313106 DOI: 10.1021/acs.jctc.1c01128] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
20
Neese F. Software update: The ORCA program system—Version 5.0. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1606] [Citation(s) in RCA: 49] [Impact Index Per Article: 24.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
21
Yu C, Piscelli BA, Maharik NA, Cordes DB, Slawin AMZ, Cormanich RA, O'Hagan D. Unexpected triaxial preferences in some all-syn 1,3,5-trifluorocyclohexanes. Chem Commun (Camb) 2022;58:12855-12858. [DOI: 10.1039/d2cc05058g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
22
Solel E, Ruth M, Schreiner PR. London Dispersion Helps Refine Steric A-Values: Dispersion Energy Donor Scales. J Am Chem Soc 2021;143:20837-20848. [PMID: 34846890 DOI: 10.1021/jacs.1c09222] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
23
Jaworski A, Hedin N. Local energy decomposition analysis and molecular properties of encapsulated methane in fullerene (CH4@C60). Phys Chem Chem Phys 2021;23:21554-21567. [PMID: 34550137 DOI: 10.1039/d1cp02333k] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
24
Altun A, Garcia-Ratés M, Neese F, Bistoni G. Unveiling the complex pattern of intermolecular interactions responsible for the stability of the DNA duplex. Chem Sci 2021;12:12785-12793. [PMID: 34703565 PMCID: PMC8494058 DOI: 10.1039/d1sc03868k] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Accepted: 08/26/2021] [Indexed: 01/21/2023]  Open
25
Loipersberger M, Bertels LW, Lee J, Head-Gordon M. Exploring the Limits of Second- and Third-Order Møller-Plesset Perturbation Theories for Noncovalent Interactions: Revisiting MP2.5 and Assessing the Importance of Regularization and Reference Orbitals. J Chem Theory Comput 2021;17:5582-5599. [PMID: 34382394 PMCID: PMC9948597 DOI: 10.1021/acs.jctc.1c00469] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
26
Ghosh S, Neese F, Izsák R, Bistoni G. Fragment-Based Local Coupled Cluster Embedding Approach for the Quantification and Analysis of Noncovalent Interactions: Exploring the Many-Body Expansion of the Local Coupled Cluster Energy. J Chem Theory Comput 2021;17:3348-3359. [PMID: 34037397 PMCID: PMC8190956 DOI: 10.1021/acs.jctc.1c00005] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2021] [Indexed: 11/30/2022]
27
Borges R, Colby SM, Das S, Edison AS, Fiehn O, Kind T, Lee J, Merrill AT, Merz KM, Metz TO, Nunez JR, Tantillo DJ, Wang LP, Wang S, Renslow RS. Quantum Chemistry Calculations for Metabolomics. Chem Rev 2021;121:5633-5670. [PMID: 33979149 PMCID: PMC8161423 DOI: 10.1021/acs.chemrev.0c00901] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Indexed: 02/07/2023]
28
Beck ME, Riplinger C, Neese F, Bistoni G. Unraveling individual host-guest interactions in molecular recognition from first principles quantum mechanics: Insights into the nature of nicotinic acetylcholine receptor agonist binding. J Comput Chem 2021;42:293-302. [PMID: 33232540 DOI: 10.1002/jcc.26454] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Revised: 10/30/2020] [Accepted: 11/02/2020] [Indexed: 11/08/2022]
29
Altun A, Neese F, Bistoni G. Extrapolation to the Limit of a Complete Pair Natural Orbital Space in Local Coupled-Cluster Calculations. J Chem Theory Comput 2020;16:6142-6149. [PMID: 32897712 PMCID: PMC7586325 DOI: 10.1021/acs.jctc.0c00344] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
30
Joyce JP, Shores MP, Rappè AK. Protobranching as repulsion-induced attraction: a prototype for geminal stabilization. Phys Chem Chem Phys 2020;22:16998-17006. [PMID: 32676632 DOI: 10.1039/d0cp02193h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
31
Neese F, Wennmohs F, Becker U, Riplinger C. The ORCA quantum chemistry program package. J Chem Phys 2020;152:224108. [DOI: 10.1063/5.0004608] [Citation(s) in RCA: 697] [Impact Index Per Article: 174.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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