The Relative Stability of Indole Isomers Is a Consequence of the Glidewell-Lloyd Rule

Aromatic stabilization energies in excited states at the multiconfigurational level: assessment in archetypal organic rings

In this study, the excited state (anti)aromaticity of archetypal rings: benzene, cyclobutadiene, and cyclooctatetraene, was investigated using the energetic criterion by calculating aromatic stabilization energies. Calculations were performed at the multiconfigurational level, including dynamic correlation effect corrections using the N-electron valence state perturbation theory (NEVPT2) method. Results were compared with previously published data based on the magnetic and delocalization criteria. Aromaticity was assessed for the ground state, singlet excited states (S1, S2, and S3), and triplet excited states (T1, T2, T3, and T4). (Anti)aromaticity assignments using the energetic criterion demonstrate both agreement and discrepancies with the other criteria, particularly for higher energy electronic states demonstrating the complexity of aromaticity assignment beyond the ground state. Finally, an approximate equation is proposed for the calculation of aromatic stabilization energies in excited states using experimental data such as formation enthalpies and well-resolved absorption spectra.

Indolizinylalanine Regioisomers: Tryptophan Isosteres with Bathochromic Fluorescence Emission

We have developed a high yielding synthesis of indolizine and directly elaborated the molecule into three optically active indolizinylalanine regioisomers. The protocols exploit metal catalyzed coupling of indolizinyl-halides with organozinc reagents derived from carbamoylated iodoalanine esters. The scalable protocols provide products in a form amenable to solid-phase peptide synthesis (SPPS). When incorporated into peptides, the indolizine heterocycle is more basic and markedly less nucleophilic than tryptophan. Its protonated vinylpyridinium form is deeply colored in solution while the neutral heterocycle is highly fluorescent. The fluorescence quantum yield of indolizine exceeds that of indole and aza-indoles in water, suggesting that indolizinylalanines could be powerful optical probes of protein structure and dynamics, functioning as true tryptophan isosteres.

Is azulene's local aromaticity and relative stability driven by the Glidewell-Lloyd rule?

The local aromaticity of azulene has been studied to understand their electronic properties. For this purpose, we have used the magnetic criterion through magnetically induced current density maps, ring current strengths, NICSzz(1), and the bifurcation value of three-dimensional surfaces of NICSzz. On the other hand, the delocalization criterion was used by calculating the MCI and ELFπ. The results show that the five-membered ring (5-MR) is more aromatic than the seven-membered ring (7-MR) and more aromatic than the free C5H5- ring. The opposite case is seen for the seven-membered ring, which is less aromatic than the free C7H7+. The local aromatic rings in azulene are formed due to an intramolecular electron transfer from the 7-MR to the 5-MR. In addition, the proposed resonance structures that allow explaining the properties of azulene, such as the dipole moment or the relative stability (in comparison to other isomers), show a preference for the formation of 5-MRs; for this reason, it is possible to conclude that the aromaticity and relative stability of azulene is driven by the Glidewell-Lloyd rule.

Substitution Effect of a Single Nitrogen Atom on π-Electronic Systems of Linear Polycyclic Aromatic Hydrocarbons (PAHs): Theoretically Visualized Coexistence of Mono- and Polycyclic π-Electron Delocalization

We theoretically investigated the nitrogen substitution effect on the molecular structure and π-electron delocalization in linear nitrogen-substituted polycyclic aromatic hydrocarbons (N-PAHs). Based on the optimized molecular structures and magnetic field-induced parameters of fused bi- and tricyclic linear N-PAHs, we found that the local π-electron delocalization of subcycles (e.g., mono- and bicyclic constituent moieties) in linear N-PAHs is preserved, despite deviation from ideal structures of parent monocycles. The introduction of a fused five-membered ring with a pyrrolic N atom (N-5MR) in linear N-PAHs significantly perturbs the π-electronic condition of the neighboring fused six-membered ring (6MR). Monocyclic pyrrole exhibits substantial bond length alternations, strongly influencing the π-electronic systems of both the fused N-5MR and 6MR in linear N-PAHs, depending on the location of shared covalent bonds. A fused six-membered ring with a graphitic N atom in an indolizine moiety cannot generate monocyclic π-electron delocalization but instead contributes to the formation of polycyclic π-electron delocalization. This is evidenced by bifurcated diatropic ring currents induced by an external magnetic field. In conclusion, the satisfaction of Hückel's 4n + 2 rule for both mono- and polycycles is crucial for understanding the overall π-electron delocalization. It is crucial to consider the unique characteristics of the three types of substituted N atoms and the spatial arrangement of 5MR and 6MR in N-PAHs.

Intramolecular Carboxyamidation of Alkyne-Tethered O-Acylhydroxamates through Formation of Fe(III)-Nitrenoids

We developed intramolecular carboxyamidations of alkyne-tethered O-acylhydroxamates followed by either thermally induced spontaneous or 4-(dimethylamino)pyridine-catalyzed O→O or O→N acyl group migration. Under iron-catalyzed conditions, the carboxyamidation products were generated in high yield from both Z-alkene and arene-tethered substrates. DFT calculations indicate that the iron-catalyzed carboxyamidation proceeds via a stepwise mechanism involving iron-imidyl radical cyclization followed by intramolecular acyloxy transfer from the iron center to the alkenyl radical center to furnish the cis-carboxyamidation product. Upon treatment with 4-(dimethylamino)pyridine, the Z-alkene-tethered carboxyamidation products underwent selective O→O acyl migration to generate 2-acyloxy-5-acyl pyrroles. Thermal O→N acyl migration occurs during carboxyamidation if the Z-alkene linker contains an alkyl or an aryl substituent at the β-position of the carbonyl group. On the other hand, the arene linker-containing compounds selectively undergo O→N acyl migration to generate N-acyl-3-acylisoindolinones, and the corresponding O→O acyl migration forming isoindole derivatives was not observed.

Dibenzoheterole-Fused s-Indacenes

Heterole (pyrrole, thiophene, furan, thiophene-S,S-dioxide)-fused s-indacenes are known for their enhanced paratropic ring-current strength. However, the outcome of the antiaromatic properties for dibenzoheterole-fused s-indacene antiaromatics remained underexplored. Carbazole-, dibenzothiophene-, dibenzofuran-, and dibenzo[b,d]thiophene-5,5-dioxide-fused s-indacenes 1-4, respectively, were synthesized and characterized by experimental (NMR, single-crystal, UV-vis, CV) and computational (DFT) approaches to study the ground-state antiaromatic properties. Sulfone-containing 4 showed the weakest paratropic ring-current strength for the s-indacene unit, while 1-3 showed a relatively greater paratropicity for the s-indacene unit, as evidenced by the changes in 1H NMR chemical shifts of s-indacene protons. Such observation was explained by the electron-withdrawing effect of the sulfone group and loss of 4n + 2 aromaticity of the heterole unit for 4 reducing its s-indacene paratropicity strength as the nonaromaticity of the heterole unit reduces the π-bond character at the dibenzo[b,d]thiophene-5,5-dioxide/s-indacene fusion site to avoid antiaromatic s-indacene ring formation. The modulation of the paratropic ring-current strength of s-indacene for 1-4 was further supported by the NICS(1)zz and ring-current (ACID) calculations.

Synthesis and Atropisomeric Properties of Benzoazepine-Fused Isoindoles

Atropisomeric, bench-stable benzoazepine-fused isoindoles were synthesized via oxidation from isoindoline precursors. Using the isoindoles 5d-f as models, the stereochemistry and conformational folding of the systems were examined. Chiral UHPLC was used to analyze the rate of racemization and calculate the Gibbs free energy of enantiomerization (ΔG^‡_Enant). X-ray crystallography, ¹H NMR spectroscopy, and DFT calculations were used to elucidate the three axes of chirality and clarify the structural factors contributing to ΔG^‡_Enant. Tandem rotation around the axes of chirality precludes the formation of diastereomers, with rotational restriction of the C_aryl-N_sulfonamide bond determined as the moderator of atropisomeric stability in the system, affected primarily by steric hindrance as well as by π-stacking interactions facilitated by the folded conformation of the sulfonamide over the isoindole moiety.

Conjugation between 3D and 2D aromaticity: does it really exist? The case of carborane-fused heterocycles

Although several synthesized icosahedral carborane fused 2D π-ring systems are known, and even considerable conjugation has been noted between them in some cases, the phenomenon itself is not fully understood. Based on the results of our computational study, it can be concluded that the 2D aromatic character of the fused (exo) five-membered ring is low, even in cases where significant conjugation was proposed in previous studies. Moreover, the carborane moiety constricts the bonding properties of the exo ring, thus prohibiting or promoting different Lewis resonance structures. These results will shed further light on the design and electronic modulation of new carborane-based materials.

Quorum Sensing Orchestrates Antibiotic Drug Resistance, Biofilm Formation, and Motility in Escherichia coli and Quorum Quenching Activities of Plant-derived Natural Products: A Review

Quorum sensing (QS) is a type of cell-to-cell communication that is influenced by an increase in signaling molecules known as autoinducers, which is correlated to the increase in the density of microbial communities. In this review, we aim to discuss and provide updates on the different signaling molecules used by Escherichia coli, such as acyl-homoserine lactone (AHL), autoinducer-2 (AI-2), and indole to influence key phenotypes such as antibiotic drug resistance, biofilm formation, and motility during quorum sensing. Based on the literature, E. coli signaling molecules have different functions during cell-to-cell communication such that the increase in AHL and indole was found to cause the modulation of antibiotic resistance and inhibition of biofilm formation and motility. Meanwhile, AI-2 is known to modulate biofilm formation, antibiotic resistance, and motility. On the other hand, in the existing literature, we found that various plants possess phytochemicals that can be used to alter QS and its downstream key phenotypes such as biofilm formation, swimming and swarming motility, and genes related to motility, curli and AI-2 production. However, the exact physiological and molecular mechanisms of these natural compounds are still understudied. Understanding the mechanisms of those phytochemicals during QS are therefore highly recommended to conduct as a necessary step for future scholars to develop drugs that target the actions of QS-signaling molecules and receptors linked to antibiotic resistance, biofilm formation, and motility without putting bacteria under stress, thereby preventing the development of drug resistance.

Regioselective synthesis of polysaccharide-amino acid ester conjugates

Site-specific conjugation of polysaccharides with proteins is very challenging. Creating the ability to control chemo- and regioselective reaction between polysaccharides and amino acid derivatives can not only create potentially useful and bioactive natural polymer constructs, but should also provide useful guidance for the principles of polysaccharide-protein conjugate synthesis. In this work, we exploited regioselective bromination of the non-reducing end primary dextran hydroxyl using N-bromosuccinimide (NBS) and triphenylphosphine (Ph₃P) in the dimethylacetamide (DMAc) and lithium bromide solvent system, thereby enabling a regio- and chemoselective synthetic strategic approach to a variety of polysaccharide-amino acid ester adducts. We demonstrated selective condensation of the α-amino groups of esters of the amino acids tyrosine and proline, displacing the single, terminal C6 bromides of 6-BrDextran, as well as the 6-Br moieties of 6-BrCA320S, with high conversion (71-96%). Histidine ester side group amines were found to react with 6-BrCA320S, while those of tryptophan ester did not. These results provide useful access to polysaccharide-amino acid ester adducts of various architectures, and guide us in designing new pathways to polysaccharide-protein copolymers.

Unveiling two antiaromatic s-indacenodicarbazole isomers with tuneable paratropicity

Linear and curved antiaromatic s-indacenodicarbazole isomers were synthesized and characterized to show tuneable strength of s-indacene paratropicity, as analyzed by NICS(1)zz and ACID (ring-current) calculations. The curved isomer showed a...

Nickel-Catalyzed Dearomative Arylboration of Indoles: Regioselective Synthesis of C2- and C3-Borylated Indolines

Indole dearomatization is an important strategy to access indolines: a motif present in a variety of natural products and biologically active molecules. Herein, a method for transition-metal catalyzed regioselective dearomative arylboration of indoles to generate diverse indolines is presented. The method accomplishes intermolecular dearomatization of simple indoles through a migratory insertion pathway on substrates that lack activating or directing groups on the C2- or C3-positions. Synthetically useful C2- and C3-borylated indolines can be accessed through a simple change in N-protecting group in high regio- and diastereoselectivities (up to >40:1 rr and >40:1 dr) from readily available starting materials. Additionally, the origin of regioselectivity was explored experimentally and computationally to uncover the remarkable interplay between carbonyl orientation of the N-protecting group on indole, electronics of the C2-C3 π-bond, and sterics. The method enabled the first enantioselective synthesis of (-)-azamedicarpin.

Extension and Quantification of the Fries Rule and Its Connection to Aromaticity: Large-Scale Validation by Wave-Function-Based Resonance Analysis

The Fries rule is a simple, intuitive tool to predict the most dominant Kekulé structures of polycyclic aromatic hydrocarbons (PAHs), which is valuable for understanding the structure, stability, reactivity, and aromaticity of these conjugated compounds. However, it still remains an empirical hypothesis, with limited qualitative applications. Herein, we verify, generalize, and quantify the Fries rule based on the recently developed resonance analysis of the DFT wave functions of over 1500 PAH and fullerene molecules with over a billion Kekulé structures. The extended rules, counting the numbers of electrons within all rings (not just sextets), are able to rank the relative importance of all Kekulé structures for all considered systems. The statistically meaningful quantification also opens a way to evaluate ring aromaticity based on the resonance theory, which generally agrees well with conventional aromaticity descriptors. Furthermore, we propose a purely graph-based aromaticity indicator nicely applicable to PAHs and fullerenes, with no need of any quantum chemistry calculations, so that it can make valuable predictions for molecular properties that are related to local aromaticity.

Antiaromaticity-Aromaticity Interplay in Fused Benzenoid Systems Using Molecular Electrostatic Potential Topology

The phenomenon of antiaromaticity-aromaticity interplay in aromatic-antiaromatic (A-aA)-fused systems is studied using molecular electrostatic potential (MESP) analysis, which clearly brings out the electron-rich π-regions of molecular systems. Benzene, naphthalene, phenanthrene, and pyrene are the aromatic units and cyclobutadiene and pentalene are the antiaromatic units considered to construct the A-aA-fused systems. The fused system is seen to reduce the antiaromaticity by adopting a configuration containing the least number of localized bonds over antiaromatic moieties. This is clearly observed in 25 isomers of a fused system composed of three naphthalene and two cyclobutadiene units. Denoting the number of π-bonds in the cyclobutadiene rings by the notation (n, n'), the systems belonging to the class (0, 0) and (2, 2) turn out to be the most and least stable configurations, respectively. The stability of the fused system depends on the empty π-character of the antiaromatic ring, hence naphthalene and benzene prefer to fuse with cyclobutadiene in a linear and angular fashion, respectively. Generally, a configuration with the maximum number of 'empty' rings (0, 0, 0, ...) is considered to be the most stable for the given A-aA system. The stability and aromatic/antiaromatic character of A-aA-fused systems with pentalene is also interpreted in a similar way. MESP topology, clearly bringing out the distribution of double bonds in the fused systems, leads to a simple interpretation of the aromatic/antiaromatic character of them. Also, it leads to powerful predictions on stable macrocyclic A-aA systems.

Theoretical Study on Singlet Fission in Aromatic Diaza s-Indacene Dimers

We theoretically show that diaza (N₂)-substitution to s-indacene with 4n π-electrons, by which the number of π-electrons in N₂-s-indacene amounts to 4n+2, is a new strategy to design efficient singlet fission (SF) molecules. By N₂-substitution, the diradical character and the exchange integral are found to be tuned moderately, leading to satisfying the excitation energy level matching condition for SF with a large triplet excitation energy. On the basis of the effective electronic coupling related to the SF rate, we explore the optimal slip-stack dimer packings for fast SF. Their underlying mechanisms are well understood from the odd-electron density, resonance structure, and frontier orbital distribution, as the functions of the N₂-substituted positions. Furthermore, aromaticities of N₂-s-indacenes are evaluated explicitly on the basis of the magnetically induced current. Although N₂-s-indacenes display strengths of aromaticities similar to that of anthracene, a local decrease in aromaticity is found to correlate to the spatial feature of diradical character, i.e., odd-electron density. The present findings not only newly propose N₂-s-indacenes as feasible SF molecules but also contribute to comprehending the interplay between aromaticity and diradical electronic structures contributing to SF.