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For: Shu Y, Varga Z, Kanchanakungwankul S, Zhang L, Truhlar DG. Diabatic States of Molecules. J Phys Chem A 2022;126:992-1018. [PMID: 35138102 DOI: 10.1021/acs.jpca.1c10583] [Citation(s) in RCA: 31] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Number Cited by Other Article(s)
1
Gumber S, Prezhdo OV. Energy-Conserving Surface Hopping for Auger Processes. J Chem Theory Comput 2024;20:5408-5417. [PMID: 38902855 PMCID: PMC11238531 DOI: 10.1021/acs.jctc.4c00562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/22/2024]
2
Neville SP, Schuurman MS. Calculation of quasi-diabatic states within the DFT/MRCI(2) framework: The QD-DFT/MRCI(2) method. J Chem Phys 2024;160:234109. [PMID: 38899687 DOI: 10.1063/5.0214637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Accepted: 05/23/2024] [Indexed: 06/21/2024]  Open
3
Li F, Liu X, Ma H, Bian W. A diabatization method based upon integrating the diabatic potential gradient difference. Phys Chem Chem Phys 2024;26:16477-16487. [PMID: 38656815 DOI: 10.1039/d4cp00375f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
4
Shu Y, Truhlar DG. Generalized Semiclassical Ehrenfest Method: A Route to Wave Function-Free Photochemistry and Nonadiabatic Dynamics with Only Potential Energies and Gradients. J Chem Theory Comput 2024;20:4396-4426. [PMID: 38819014 DOI: 10.1021/acs.jctc.4c00424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/01/2024]
5
Chang H, Li W, Sun Z. New Diabatic Potential Energy Surfaces for the Li + H2 Reaction and Time-Dependent Quantum Wave Packet Studies. J Phys Chem A 2024;128:4412-4424. [PMID: 38787593 DOI: 10.1021/acs.jpca.4c00539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2024]
6
Arcidiacono A, Cignoni E, Mazzeo P, Cupellini L, Mennucci B. Predicting Solvatochromism of Chromophores in Proteins through QM/MM and Machine Learning. J Phys Chem A 2024;128:3646-3658. [PMID: 38683801 PMCID: PMC11089512 DOI: 10.1021/acs.jpca.4c00249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 03/03/2024] [Accepted: 04/01/2024] [Indexed: 05/02/2024]
7
Wang J, Xie C, Hu X, Guo H, Xie D. Impact of Geometric Phase on Dynamics of Complex-Forming Reactions: H + O2 → OH + O. J Phys Chem Lett 2024;15:4237-4243. [PMID: 38602563 DOI: 10.1021/acs.jpclett.4c00789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/12/2024]
8
Shu Y, Akher FB, Guo H, Truhlar DG. Parametrically Managed Activation Functions for Improved Global Potential Energy Surfaces for Six Coupled 5A' States and Fourteen Coupled 3A' States of O + O2. J Phys Chem A 2024;128:1207-1217. [PMID: 38349764 DOI: 10.1021/acs.jpca.3c06823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/15/2024]
9
Pengmei Z, Liu J, Shu Y. Beyond MD17: the reactive xxMD dataset. Sci Data 2024;11:222. [PMID: 38378670 PMCID: PMC10879526 DOI: 10.1038/s41597-024-03019-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Accepted: 01/29/2024] [Indexed: 02/22/2024]  Open
10
Sršeň Š, von Lilienfeld OA, Slavíček P. Fast and accurate excited states predictions: machine learning and diabatization. Phys Chem Chem Phys 2024;26:4306-4319. [PMID: 38234256 PMCID: PMC10829538 DOI: 10.1039/d3cp05685f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Accepted: 01/02/2024] [Indexed: 01/19/2024]
11
Gómez S, Spinlove E, Worth G. Benchmarking non-adiabatic quantum dynamics using the molecular Tully models. Phys Chem Chem Phys 2024;26:1829-1844. [PMID: 38170796 DOI: 10.1039/d3cp03964a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
12
Han S, Xie C, Hu X, Yarkony DR, Guo H, Xie D. Quantum Dynamics of Photodissociation: Recent Advances and Challenges. J Phys Chem Lett 2023;14:10517-10530. [PMID: 37970789 DOI: 10.1021/acs.jpclett.3c02735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2023]
13
Shu Y, Varga Z, Zhang D, Truhlar DG. ChemPotPy: A Python Library for Analytic Representations of Potential Energy Surfaces and Diabatic Potential Energy Matrices. J Phys Chem A 2023;127:9635-9640. [PMID: 37916790 DOI: 10.1021/acs.jpca.3c05899] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2023]
14
Thompson LM, Kempfer-Robertson EM, Saha S, Parmar S, Kozlowski PM. Nonorthogonal Multireference Wave Function Description of Triplet-Triplet Energy Transfer Couplings. J Chem Theory Comput 2023;19:7685-7694. [PMID: 37862602 DOI: 10.1021/acs.jctc.3c00898] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2023]
15
Li Manni G, Fdez. Galván I, Alavi A, Aleotti F, Aquilante F, Autschbach J, Avagliano D, Baiardi A, Bao JJ, Battaglia S, Birnoschi L, Blanco-González A, Bokarev SI, Broer R, Cacciari R, Calio PB, Carlson RK, Carvalho Couto R, Cerdán L, Chibotaru LF, Chilton NF, Church JR, Conti I, Coriani S, Cuéllar-Zuquin J, Daoud RE, Dattani N, Decleva P, de Graaf C, Delcey M, De Vico L, Dobrautz W, Dong SS, Feng R, Ferré N, Filatov(Gulak) M, Gagliardi L, Garavelli M, González L, Guan Y, Guo M, Hennefarth MR, Hermes MR, Hoyer CE, Huix-Rotllant M, Jaiswal VK, Kaiser A, Kaliakin DS, Khamesian M, King DS, Kochetov V, Krośnicki M, Kumaar AA, Larsson ED, Lehtola S, Lepetit MB, Lischka H, López Ríos P, Lundberg M, Ma D, Mai S, Marquetand P, Merritt ICD, Montorsi F, Mörchen M, Nenov A, Nguyen VHA, Nishimoto Y, Oakley MS, Olivucci M, Oppel M, Padula D, Pandharkar R, Phung QM, Plasser F, Raggi G, Rebolini E, Reiher M, Rivalta I, Roca-Sanjuán D, Romig T, Safari AA, Sánchez-Mansilla A, Sand AM, Schapiro I, Scott TR, Segarra-Martí J, Segatta F, Sergentu DC, Sharma P, Shepard R, Shu Y, Staab JK, Straatsma TP, Sørensen LK, Tenorio BNC, Truhlar DG, Ungur L, Vacher M, Veryazov V, Voß TA, Weser O, Wu D, Yang X, Yarkony D, Zhou C, Zobel JP, Lindh R. The OpenMolcas Web: A Community-Driven Approach to Advancing Computational Chemistry. J Chem Theory Comput 2023;19:6933-6991. [PMID: 37216210 PMCID: PMC10601490 DOI: 10.1021/acs.jctc.3c00182] [Citation(s) in RCA: 56] [Impact Index Per Article: 56.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Indexed: 05/24/2023]
16
Zhao X, Merritt ICD, Lei R, Shu Y, Jacquemin D, Zhang L, Xu X, Vacher M, Truhlar DG. Nonadiabatic Coupling in Trajectory Surface Hopping: Accurate Time Derivative Couplings by the Curvature-Driven Approximation. J Chem Theory Comput 2023;19:6577-6588. [PMID: 37772732 DOI: 10.1021/acs.jctc.3c00813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/30/2023]
17
Akher FB, Shu Y, Varga Z, Truhlar DG. Semiclassical Multistate Dynamics for Six Coupled 5A' States of O + O2. J Chem Theory Comput 2023. [PMID: 37441750 DOI: 10.1021/acs.jctc.3c00517] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/15/2023]
18
Akher FB, Shu Y, Varga Z, Bhaumik S, Truhlar DG. Parametrically Managed Activation Function for Fitting a Neural Network Potential with Physical Behavior Enforced by a Low-Dimensional Potential. J Phys Chem A 2023. [PMID: 37307218 DOI: 10.1021/acs.jpca.3c02627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
19
Li C, Hou S, Xie C. Constructing Diabatic Potential Energy Matrices with Neural Networks Based on Adiabatic Energies and Physical Considerations: Toward Quantum Dynamic Accuracy. J Chem Theory Comput 2023. [PMID: 37216273 DOI: 10.1021/acs.jctc.2c01074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
20
Fdez Galván I, Lindh R. Smooth Things Come in Threes: A Diabatic Surrogate Model for Conical Intersection Optimization. J Chem Theory Comput 2023. [PMID: 37192531 DOI: 10.1021/acs.jctc.3c00389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
21
Shu Y, Zhang L, Wu D, Chen X, Sun S, Truhlar DG. New Gradient Correction Scheme for Electronically Nonadiabatic Dynamics Involving Multiple Spin States. J Chem Theory Comput 2023;19:2419-2429. [PMID: 37079755 DOI: 10.1021/acs.jctc.2c01173] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/22/2023]
22
Lu D, Guo H. Quantum and Semiclassical Dynamics of Nonadiabatic Electronic Excitation of C(3P) to C1D) by Hyperthermal Collisions with N2. J Phys Chem A 2023;127:3190-3199. [PMID: 36989004 DOI: 10.1021/acs.jpca.3c00893] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/30/2023]
23
Zhang J, Tang Z, Zhang X, Zhu H, Zhao R, Lu Y, Gao J. Target State Optimized Density Functional Theory for Electronic Excited and Diabatic States. J Chem Theory Comput 2023;19:1777-1789. [PMID: 36917687 DOI: 10.1021/acs.jctc.2c01317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/16/2023]
24
Zhao X, Shu Y, Zhang L, Xu X, Truhlar DG. Direct Nonadiabatic Dynamics of Ammonia with Curvature-Driven Coherent Switching with Decay of Mixing and with Fewest Switches with Time Uncertainty: An Illustration of Population Leaking in Trajectory Surface Hopping Due to Frustrated Hops. J Chem Theory Comput 2023;19:1672-1685. [PMID: 36877830 DOI: 10.1021/acs.jctc.2c01260] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2023]
25
Shu Y, Truhlar DG. Decoherence and Its Role in Electronically Nonadiabatic Dynamics. J Chem Theory Comput 2023;19:380-395. [PMID: 36622843 PMCID: PMC9878713 DOI: 10.1021/acs.jctc.2c00988] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Indexed: 01/10/2023]
26
Gelin MF, Chen L, Domcke W. Equation-of-Motion Methods for the Calculation of Femtosecond Time-Resolved 4-Wave-Mixing and N-Wave-Mixing Signals. Chem Rev 2022;122:17339-17396. [PMID: 36278801 DOI: 10.1021/acs.chemrev.2c00329] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
27
Asha H, Green JA, Esposito L, Martinez-Fernandez L, Santoro F, Improta R. Effect of the Thermal Fluctuations of the Photophysics of GC and CG DNA Steps: A Computational Dynamical Study. J Phys Chem B 2022;126:10608-10621. [PMID: 36508709 DOI: 10.1021/acs.jpcb.2c05688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
28
Travnikova O, Piteša T, Ponzi A, Sapunar M, Squibb RJ, Richter R, Finetti P, Di Fraia M, De Fanis A, Mahne N, Manfredda M, Zhaunerchyk V, Marchenko T, Guillemin R, Journel L, Prince KC, Callegari C, Simon M, Feifel R, Decleva P, Došlić N, Piancastelli MN. Photochemical Ring-Opening Reaction of 1,3-Cyclohexadiene: Identifying the True Reactive State. J Am Chem Soc 2022;144:21878-21886. [PMID: 36444673 PMCID: PMC9732879 DOI: 10.1021/jacs.2c06296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
29
Rani VJ, Kanakati AK, Mahapatra S. Multi-state and Multi-mode Vibronic Coupling Effects in the Photoionization Spectroscopy of Acetaldehyde. J Phys Chem A 2022;126:6581-6593. [PMID: 36126257 DOI: 10.1021/acs.jpca.2c03073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
30
Han S, Schröder M, Gatti F, Meyer HD, Lauvergnat D, Yarkony DR, Guo H. Representation of Diabatic Potential Energy Matrices for Multiconfiguration Time-Dependent Hartree Treatments of High-Dimensional Nonadiabatic Photodissociation Dynamics. J Chem Theory Comput 2022;18:4627-4638. [PMID: 35839299 DOI: 10.1021/acs.jctc.2c00370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
31
Wang Y, Guo H, Yarkony DR. Internal conversion and intersystem crossing dynamics based on coupled potential energy surfaces with full geometry-dependent spin-orbit and derivative couplings. Nonadiabatic photodissociation dynamics of NH3(A) leading to the NH(X3Σ-, a1Δ) + H2 channel. Phys Chem Chem Phys 2022;24:15060-15067. [PMID: 35696936 DOI: 10.1039/d2cp01271e] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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