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Sharma M, Banik S, Roy TK. Performance of Effective Harmonic Oscillator Approach for the Calculations of Vibrational Transition Energies of Large Molecules. J Phys Chem A 2024. [PMID: 38979981 DOI: 10.1021/acs.jpca.4c01583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/10/2024]
Abstract
The accuracy and performance of the effective harmonic oscillator approximation for the description of anharmonic vibrational structure calculations are tested for large molecular systems and compared with experimental values along with vibrational self-consistent field and second-order perturbation theories. The effective harmonic oscillator approach is an effective single-particle approximation where the variational parameters are the centroids and widths of the multidimensional Gaussian product functions posited as the vibrational wave functions. A comprehensive calculation for 849 transitions that include the fundamentals, two and three quanta overtone transitions, and several combination bands of three polyaromatic hydrocarbons and one DNA nucleobase with a total of 231 normal modes are assessed. A comparison of EHO results with the experimental values is done for the polyaromatic hydrocarbons, and a close agreement is found between the two results. It also offers anharmonic eigenstates and eigenfunctions that are nearly identical with vibrational self-consistent field theory. An extensive analysis on the resultant wave functions of the excited states is performed. The overall root-mean-square deviation (RMSD) between these two methods for 849 transitions understudy is only about 8.3 cm-1, suggesting the effective harmonic oscillator as a viable alternative for the reliable calculations of transition energies of large molecular systems.
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Affiliation(s)
- Mokshi Sharma
- Department of Chemistry and Chemical Sciences, Central University of Jammu, Rahya-Suchani (Bagla), Jammu, Jammu and Kashmir 181143, India
| | - Subrata Banik
- Department of Chemistry, School of Chemical and Biotechnology, SASTRA Deemed University, Thanjavur, Tamil Nadu 613401, India
| | - Tapta Kanchan Roy
- Department of Chemistry and Chemical Sciences, Central University of Jammu, Rahya-Suchani (Bagla), Jammu, Jammu and Kashmir 181143, India
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2
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Palanisamy N, Banik S. An approximation to the vibrational coupled-cluster method for CH-stretching of large molecules: application to naphthalene and anthracene. Phys Chem Chem Phys 2023; 25:20076-20092. [PMID: 37462438 DOI: 10.1039/d3cp01313h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2023]
Abstract
We propose an approximation to the vibrational coupled-cluster method (VCCM) to describe the CH-stretching region of the vibrational spectrum of large molecules. The vibrational modes of a molecule are divided into two sets: the target set and the bath set. The target set includes the CH stretches and the modes that are strongly coupled with the CH stretches and/or involve strong Fermi resonances with a CH stretch fundamental. The rest of the modes are in the bath set. First, the effective harmonic oscillator (EHO) approximation is invoked for the whole system to obtain the zeroth-order frequencies and modified potentials. The effects of interaction between the bath set and the target sets are included in the modified potential from the EHO calculation. The VCCM equations are constructed with the modified potential from the EHO calculations and for the target set only. The transition energies and intensities are calculated using such a truncated VCCM approximation. The proposed method is applied to calculate the IR spectra of naphthalene and anthracene. The results with three different criteria for selecting the modes in the target set are compared with the experimental IR spectra.
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Affiliation(s)
- Nivedhitha Palanisamy
- Department of Chemistry, School of Chemical and Biotechnology, SASTRA Deemed University, Thanjavur, Tamil Nadu, India.
| | - Subrata Banik
- Department of Chemistry, School of Chemical and Biotechnology, SASTRA Deemed University, Thanjavur, Tamil Nadu, India.
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3
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Kelly EM, Egan MJ, Colόn A, Angel SM, Sharma SK. Remote Raman Sensing Using a Single-Grating Monolithic Spatial Heterodyne Raman Spectrometer: A Potential Tool for Planetary Exploration. APPLIED SPECTROSCOPY 2023; 77:534-549. [PMID: 36223496 DOI: 10.1177/00037028221121304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Advances in Raman instrumentation have led to the implementation of a remote dispersive Raman spectrometer on the Perseverance rover on Mars, which is used for remote sensing. For remote applications, dispersive spectrometers suffer from a few setbacks such as relatively larger sizes, low light throughput, limited spectral ranges, relatively low resolutions for small devices, and high sensitivity to misalignment. A spatial heterodyne Raman spectrometer (SHRS), which is a fixed grating interferometer, helps overcome some of these problems. Most SHRS devices that have been described use two fixed diffraction gratings, but a variance of the SHRS called the one-grating SHRS (1g-SHRS) replaces one of the gratings with a mirror, which makes it more compact. In a recent paper we described monolithic two-gratings SHRS, and in this paper, we investigate a single-grating monolithic SHRS (1g-mSHRS), which combines the 1g-SHRS with a monolithic setup previously tested at the University of South Carolina. This setup integrates the beamsplitter, grating, and mirror into a single monolithic device. This reduces the number of adjustable components, allows for easier alignment, and reduces the footprint of the device (35 × 35 × 25 mm with a weight of 80 g). This instrument provides a high spectral resolution (∼9 cm-1) and large spectral range (7327 cm-1) while decreasing the sensitivity to alignment with a field of view of 5.61 mm at 3m. We discuss the characteristics of the 1g-mSHRS by measuring the time-resolved remote Raman spectra of a few inorganic salts, organics, and minerals at 3 m. The 1g-mSHRS makes a good candidate for planetary exploration because of its large spectral range, greater sensitivity, competitively higher spectral resolution, low alignment sensitivity, and high light throughput in a compact easily aligned system with no moving parts.
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Affiliation(s)
- Evan M Kelly
- Hawaii Institute of Geophysics and Planetology, University of Hawaii at Manoa, Honolulu, HI, USA
| | - Miles J Egan
- Hawaii Institute of Geophysics and Planetology, University of Hawaii at Manoa, Honolulu, HI, USA
| | - Arelis Colόn
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC, USA
| | - S Michael Angel
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC, USA
| | - Shiv K Sharma
- Hawaii Institute of Geophysics and Planetology, University of Hawaii at Manoa, Honolulu, HI, USA
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Yadav S, Banik S, Prasad MD. Understanding of the C-H stretch region of infra-red spectroscopy: an analysis of the final state wavefunctions. Phys Chem Chem Phys 2021; 23:9176-9188. [PMID: 33885051 DOI: 10.1039/d0cp01157f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The nature of the wavefunctions associated with the final states in the CH stretching region of several medium sized molecules is analysed. The number of optically bright transitions is much larger than the number of CH oscillators present in the molecule, and they are spread over a range of about 300 cm-1. Several of them are clustered together within about 5 cm-1 with near equal intensities. The final states of all these transitions are superpositions of multiple zeroth order states. In almost all of such superpositions, no single zeroth order state has more than 50% weight. Several multiquantum states, with three to four quanta of excitation dominate the final states, with the CH chromophore contributing only a small weightage. Thus the band structure of the CH stretch region is due to several optically bright transitions whose final states are superpositions of low frequency multiquantum states with the CH chromophore contributing only a small weight to make them spectroscopically active.
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Affiliation(s)
- Swati Yadav
- School of Chemistry, University of Hyderabad, Hyderabad 500046, India.
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Geindre H, Allouche AR, Peláez D. Non long-range corrected density functionals incorrectly describe the intensity of the CH stretching band in polycyclic aromatic hydrocarbons. J Comput Chem 2021; 42:1018-1027. [PMID: 33760242 DOI: 10.1002/jcc.26520] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 02/24/2021] [Accepted: 02/26/2021] [Indexed: 11/12/2022]
Abstract
We present a comprehensive study of the most relevant numerical aspects influencing frequencies and intensities in the infrared spectrum of isolated polycyclic aromatic hydrocarbons (PAHs) regarding the overestimate of the IR CH-stretching bands. We use naphthalene as benchmark and show the validity of our results to different members of the PAH family. Our analysis relies on widely employed density functional theory methods and second-order vibrational perturbational theory for the computation of vibrational eigenstates. We have focused on the elucidation of the origin of the systematic overestimate of the intensities in the CH-stretching region. To rule out nonfundamental numerical errors, we have initially considered the influence of the electronic basis set and various other parameters on the different stages of the vibrational analysis. In a second stage, we have benchmarked the results of different density functional theory functionals with respect to the aforementioned overestimate taken as the ratio between the most prominent features of the spectrum, the CH-bending and the CH-stretching bands. Our results unambiguously indicate that the long-range correction plays a major role in this spurious numerical issue. More specifically, this phenomenon is due to an incorrect description of the charge distribution (and hence dipole) within the symmetrically relevant CH bonds. Long-range correction specifically remedies this issue. It improves the description of the intensities in the stretching region while at the same time it does not perturb significantly the rest of the spectrum. With respect to the frequencies, we have observed an overall improvement when compared to noncorrected functionals.
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Affiliation(s)
- Hugo Geindre
- Université Lille, UMR 8523 - Physique des Lasers, Atomes et Molécules, Lille, France
| | - Abdul-Rahman Allouche
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, Villeurbanne Cedex, France
| | - Daniel Peláez
- Institut des Sciences Moléculaires d'Orsay (ISMO) - UMR 8214. Bât. 520, Université Paris-Saclay, Orsay Cedex, France
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Balla MR, Jaliparthi V. Vibrational Hamiltonian of Naphthalene (C10H8) Using Dynamical U(2) Lie Algebras. Polycycl Aromat Compd 2021. [DOI: 10.1080/10406638.2021.1901126] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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7
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Lowest order perturbative approximation to vibrational coupled cluster method in bosonic representation. J CHEM SCI 2019. [DOI: 10.1007/s12039-019-1692-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Thomas PS, Carrington T, Agarwal J, Schaefer HF. Using an iterative eigensolver and intertwined rank reduction to compute vibrational spectra of molecules with more than a dozen atoms: Uracil and naphthalene. J Chem Phys 2018; 149:064108. [DOI: 10.1063/1.5039147] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
Affiliation(s)
- Phillip S. Thomas
- Chemistry Department, Queen’s University, Kingston, Ontario K7L 3N6, Canada
| | - Tucker Carrington
- Chemistry Department, Queen’s University, Kingston, Ontario K7L 3N6, Canada
| | - Jay Agarwal
- Center for Computational Chemistry, University of Georgia, Athens, Georgia 30602-0525, USA
| | - Henry F. Schaefer
- Center for Computational Chemistry, University of Georgia, Athens, Georgia 30602-0525, USA
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Behera B, Das PK. Blue- and Red-Shifting Hydrogen Bonding: A Gas Phase FTIR and Ab Initio Study of RR'CO···DCCl 3 and RR'S···DCCl 3 Complexes. J Phys Chem A 2018; 122:4481-4489. [PMID: 29683668 DOI: 10.1021/acs.jpca.7b11962] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Blue-shifting H-bonded (C-D···O) complexes between CDCl3 and CH3HCO, (CH3)2CO, and C2H5(CH3)CO, and red-shifting H-bonded (C-D···S) complexes between CDCl3 with (CH3)2S and (C2H5)2S have been identified by Fourier transform infrared spectroscopy in the gas phase at room temperature. With increasing partial pressure of the components, a new band appears in the C-D stretching region of the vibrational spectra. The intensity of this band decreases with an increase in temperature at constant pressure, which provides the basis for identification of the H-bonded bands in the spectrum. The C-D stretching frequency of CDCl3 is blue-shifted by +7.1, +4, and +3.2 cm-1 upon complexation with CH3HCO, (CH3)2CO, and C2H5(CH3)CO, respectively, and red-shifted by -14 and -19.2 cm-1 upon complexation with (CH3)2S and (C2H5)2S, respectively. By using quantum chemical calculations at the MP2/6-311++G** level, we predict the geometry, electronic structural parameters, binding energy, and spectral shift of H-bonded complexes between CDCl3 and two series of compounds named RCOR' (H2CO, CH3HCO, (CH3)2CO, and C2H5(CH3)CO) and RSR' (H2S, CH3HS, (CH3)2S, and (C2H5)2S) series. The calculated and observed spectral shifts follow the same trends. With an increase in basicity of the H-bond acceptor, the C-D bond length increases, force constant decreases, and the frequency shifts to the red from the blue. The potential energy scans of the above complexes are done, which show that electrostatic attraction between electropositive D and electron-rich O/S causes bond elongation and red shift, and the electronic and nuclear repulsions lead to bond contraction and blue shifts. The dominance of the two opposing forces at the equilibrium geometry of the complex determines the nature of the shift, which changes both in magnitude and in direction with the basicity of the hydrogen-bond acceptor.
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Affiliation(s)
- B Behera
- Department of Inorganic and Physical Chemistry , Indian Institute of Science , Bangalore 560012 , India
| | - Puspendu K Das
- Department of Inorganic and Physical Chemistry , Indian Institute of Science , Bangalore 560012 , India
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Krasnoshchekov SV, Schutski RS, Craig NC, Sibaev M, Crittenden DL. Comparing the accuracy of perturbative and variational calculations for predicting fundamental vibrational frequencies of dihalomethanes. J Chem Phys 2018; 148:084102. [DOI: 10.1063/1.5020295] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Sergey V. Krasnoshchekov
- Department of Chemistry, Lomonosov Moscow State University, Leninskiye Gory 1-3, Moscow 119991, Russian Federation
| | | | - Norman C. Craig
- Department of Chemistry and Biochemistry, Oberlin College, Oberlin, Ohio 44074, USA
| | - Marat Sibaev
- Research School of Chemistry, Australian National University, Canberra, ACT 2601, Australia
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Ravichandran L, Banik S. Anomalous description of the anharmonicity of bending motions of carbon–carbon double bonded molecules with the MP2 method: ethylene as a case study. Phys Chem Chem Phys 2018; 20:27329-27341. [DOI: 10.1039/c8cp04682d] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this work, we report anomalous descriptions of bending modes of the smallest carbon–carbon double bonded molecule ethylene with the MP2 method.
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Affiliation(s)
| | - Subrata Banik
- Department of Chemistry and Chemical Sciences
- Central University of Jammu
- Samba-181143
- India
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12
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Ravichandran L, Banik S. Performance of different density functionals for the calculation of vibrational frequencies with vibrational coupled cluster method in bosonic representation. Theor Chem Acc 2017. [DOI: 10.1007/s00214-017-2177-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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13
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Banik S, Ravichandran L, Durga Prasad M. Raman spectral calculation by vibrational coupled-cluster method in bosonic representation. Mol Phys 2017. [DOI: 10.1080/00268976.2017.1321153] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Subrata Banik
- Advanced Center for Research in High Energy Materials, University of Hyderabad, Hyderabad, India
| | | | - M. Durga Prasad
- Advanced Center for Research in High Energy Materials, University of Hyderabad, Hyderabad, India
- School of Chemistry, University of Hyderabad, Hyderabad, India
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