Substituent Correlations Characterized by Hammett Constants in the Spiropyran–Merocyanine Transition

Hybrid quantum-classical polarizability model for single molecule biosensing

Optical whispering gallery mode biosensors are able to detect single molecules through effects of their polarizability. We address the factors that affect the polarizability of amino acids, which are the building blocks of life, via electronic structure theory. Amino acids are detected in aqueous environments, where their polarizability is different compared to the gasphase due to solvent effects. Solvent effects include structural changes, protonation and the local field enhancement through the solvent (water). We analyse the impact of these effects and find that all contribute to an increased effective polarizability in the solvent. We also address the excess polarizability relative to the displaced water cavity and develop a hybrid quantum-classical model that is in good agreement with self-consistent calculations. We apply our model to calculate the excess polarizability of 20 proteinogenic amino acids and determine the minimum resolution required to distinguish the different molecules and their ionised conformers based on their polarizability.

GPAW: An open Python package for electronic structure calculations

We review the GPAW open-source Python package for electronic structure calculations. GPAW is based on the projector-augmented wave method and can solve the self-consistent density functional theory (DFT) equations using three different wave-function representations, namely real-space grids, plane waves, and numerical atomic orbitals. The three representations are complementary and mutually independent and can be connected by transformations via the real-space grid. This multi-basis feature renders GPAW highly versatile and unique among similar codes. By virtue of its modular structure, the GPAW code constitutes an ideal platform for the implementation of new features and methodologies. Moreover, it is well integrated with the Atomic Simulation Environment (ASE), providing a flexible and dynamic user interface. In addition to ground-state DFT calculations, GPAW supports many-body GW band structures, optical excitations from the Bethe-Salpeter Equation, variational calculations of excited states in molecules and solids via direct optimization, and real-time propagation of the Kohn-Sham equations within time-dependent DFT. A range of more advanced methods to describe magnetic excitations and non-collinear magnetism in solids are also now available. In addition, GPAW can calculate non-linear optical tensors of solids, charged crystal point defects, and much more. Recently, support for graphics processing unit (GPU) acceleration has been achieved with minor modifications to the GPAW code thanks to the CuPy library. We end the review with an outlook, describing some future plans for GPAW.

NEXAFS spectra of model sulfide chains: implications for sulfur networks obtained from inverse vulcanization

Inverse vulcanization is a promising route to stabilize sulfur in lithium-sulfur batteries, but the resulting sulfur strand lengths in the materials are elusive. We address the strand length by characterization via sulfur near edge X-ray absorption fine structure (NEXAFS) spectroscopy. Theoretical predictions of NEXAFS spectra for model molecules containing strands with up to three sulfur atoms are verified by experiment. The near perfect agreement between simulation and experiment on the absolute energy scale allows for the predictions for larger chain lengths also. Inspection and interpretation of NEXAFS spectra from real battery materials on this basis reveals the appearance of single connecting sulfur atoms for very low sulfur content, and of longer strands when the sulfur fraction increases.

Synergistic Effects of Lewis Acid-Base Pair Sites─Hf-MOFs with Functional Groups as Distinguished Catalysts for the Cycloaddition of Epoxides with CO2

The incorporation of Lewis acid-base sites in catalysts has been considered as a significant approach to fabricating bifunctional catalysts with efficient catalytic activity for CO₂ fixation. In this paper, a series of Hafnium-based metal-organic frameworks (Hf-MOFs), NU-912(Hf) and NU-912-X(Hf)-X (X = -NH₂, -Br, -CN, and -I) derivatives assembled by Lewis acidic Hf₆(μ₃-O)₄(μ₃-OH)₄(H₂O)₄(OH)₄ (Hf₆) clusters and Lewis base-attached organic linkers, are successfully synthesized by a facile ligand functionalization method. These isostructural Hf-MOFs, which exhibit diamond channels of 1.3 nm diameter, great chemical stability, and CO₂ adsorption capacity, have been evaluated as catalysts for the CO₂ cycloaddition reaction with epoxides. Catalytic experiments reveal that the micropore environments of these MOFs have an outstanding impact on catalytic activity. Remarkably, NU-912(Hf)-I serves as an efficient heterogeneous catalyst for this catalytic reaction under mild conditions due to the high density of Lewis acid Hf₆ cluster centers and strong Lewis base functional groups, surpassing most of the reported MOF-based catalysts.

A Modern Look at Spiropyrans: From Single Molecules to Smart Materials

Photochromic compounds of the spiropyran family have two main isomers capable of inter-switching with UV or visible light. In the current review, we discuss recent advances in the synthesis, investigation of properties, and applications of spiropyran derivatives. Spiropyrans of the indoline series are in focus as the most promising representatives of multi-sensitive spirocyclic compounds, which can be switched by a number of external stimuli, including light, temperature, pH, presence of metal ions, and mechanical stress. Particular attention is paid to the structural features of molecules, their influence on photochromic properties, and the reactions taking place during isomerization, as the understanding of the structure-property relationships will rationalize the synthesis of compounds with predetermined characteristics. The main prospects for applications of spiropyrans in such fields as smart material production, molecular electronics and nanomachinery, sensing of environmental and biological molecules, and photopharmacology are also discussed.

Spiropyran-Merocyanine Based Photochromic Fluorescent Probes: Design, Synthesis, and Applications

Due to ever-increasing insights into their fundamental properties and photochromic behaviors, spiropyran derivatives are still a target of interest for researchers. The interswitching ability of this photochrome between the spiropyran (SP) and merocyanine (MC) isoforms under external stimuli (light, cations, anions, pH etc.) with different spectral properties as well as the protonation-deprotonation of its MC form allows researchers to use it suitably in sensing purposes by developing different colorimetric and fluorometric probes. Selective and sensitive recognition can be achieved by little modification of its SP moiety and functional groups. In this review, we emphasize the recent advancements (from 2019 to 2022) of spiropyran-merocyanine based fluorogenic and chromogenic probes for selective detection of various metal ions, anions, neutral analytes, and pH. We precisely explain their design strategies, sensing mechanisms, and biological and environmental applications. This review may accelerate the improvements in designing more advanced probes with innovative applications in the near future.

Force Dependent Barriers from Analytic Potentials within Elastic Environments

Bond rupture under the action of external forces is usually induced by temperature fluctuations, where the key quantity is the force dependent barrier that needs to be overcome. Using analytic potentials we find that these barriers are fully determined by the dissociation energy and the maximal force the potential can withstand. The barrier shows a simple dependence on these two quantities that allows for a re-interpretation of the Eyring-Zhurkov-Bell length Δ x ‡ and the expressions in theories going beyond that. It is shown that solely elastic environments do not change this barrier in contrast to the predictions of constraint geometry simulate external force (COGEF) strategies. The findings are confirmed by explicit calculations of bond rupture in a polydimethylsiloxane model.

Polar hydrogen species mediated nitroarenes selective reduction to anilines over an [FeMo]Sx catalyst

We herein present an efficient approach for the chemoselective synthesis of arylamines from nitroarenes and hydrazine over an iron-molybdenum sulfide catalyst ([FeMo]S_x). The heterogeneous hydrogen transfer reduction can be efficiently carried out at 30 °C and provides anilines with 95-99% selectivities. The in situ gas product analysis demonstrates that [FeMo]S_x can catalyze the decomposition of N₂H₄ to H* species, not H₂. Combining with the kinetic analysis of the aniline generation rates from nitrobenzene and intermediates, the nitro group reduction to the nitroso group is confirmed to be the rate-determining step. The positive slope of Hammett's equation suggests that the critical intermediate in the rate-determining step is in the negative state, which suggests that the active H* should be in polar states (H^δ- and H^δ+). These findings will provide a novel route for the synthesis of substituted anilines and broaden the application of MoS_x catalysts under mild conditions.

Computational study on noncovalent interactions between (n, n) single-walled carbon nanotubes and simple lignin model-compounds

Composites of carbon nanotubes (CNTs) and lignin are promising and potentially cheap precursors of-to this day-expensive carbon fibers. Since the control of the CNT-lignin interface is crucial to maximize fiber performance, it is imperative to understand the fundamental noncovalent interactions between lignin and CNT. In the present study a density functional theory study is conducted to investigate the fundamental noncovalent interaction strength between metallic (n, n) single-walled CNT (SWCNT) and simple lignin model molecules. In particular, the respective adsorption energies are used to gauge the strength of interaction classes (ππ interaction, CHπ hydrogen bonding and OH-related hydrogen bonding. From the data, substituent-dependent interaction trends as well as class- and curvature-dependent interaction trends are derived. Overall, we find that most of the interaction strength trends appear to be strongly influenced by geometry: flat orientation of the test molecules relative to the (n, n) SWCNT surface and small (n, n) SWCNT curvature-that is, large diameter enhances the CHπ and ππ interactions.

Substituent Effects Control Spiropyran-Merocyanine Equilibria and Mechanochromic Utility

Spiropyran (SP) derivatives can be converted into the colored merocyanine (MC) form using a variety of triggers. Optical switching by light for memories and dynamic systems is long known. Recently, mechanical force has been reported as an additional stimulus that converts SP into MC. SP-based mechanochromic systems are especially interesting for polymer scientists, as the covalent attachment of polymer chains is ideal to transduce force to the SP level. Whether such materials are investigated to better understand fundamental processes or long standing questions in polymer science, to design force sensors or to self-report damage, or simply pose fascinating materials which turn colored upon deformation, they have intrigued polymer scientists for more than a decade. With the chemistry of SPs being feasible and SP functionalization important to modulate SP/MC equilibria, a significant amount of work on SP structure- mechanochromic function relations has accumulated. SPs can be used as bifunctional initiators, cross-linkers, monomers, or be synthesized during polymerization. This feature article provides an overview of how the chemistry used sets the boundaries within which the mechanochromic response of SP containing polymers can be modulated.

A hierarchical Nb2O5@NiFe-MMO rod array, fabricated and used as a structured photocatalyst

Recently, using sunlight as a driving force with transitional metal oxides as photocatalysts, due to their unique optical and catalytic properties for organic reactions, has been considered to be a promising strategy in synthetic chemistry. Here, a hierarchically structured photocatalyst, a NiFe mixed metal oxide coated Nb2O5 (denoted as Nb2O5@NiFe-MMO) rod array has been successfully fabricated using Nb foil as a substrate. The Nb2O5 rod array was synthesized by the oxidative etching of Nb metal on the surface of the a substrate. The coating NiFe-MMO was obtained by the calcination of a NiFe layered double hydroxide (NiFe-LDH) precursor via the in situ epitaxial growing technique. The Nb2O5@NiFe-MMO rod array extended the photoresponse light region from ultraviolet light around 400 nm to visible light around 600 nm. With the well-designed architecture and highly dispersed NiO and Fe2O3, the as-prepared photocatalyst exhibited excellent activity and recyclability toward the reaction of aerobic coupling under relatively green conditions, with catalytic efficiency of 228 μmol cm-2 (the area is that of the Ni foil substrate) at 30 °C for 5 h. The present work provides a new strategy for the exploration of excellent structured photocatalysts based on transition metal oxide materials for selective aerobic oxidation of benzylamine to imine.

Synthesis and solution behaviour of dual light- and temperature-responsive poly(triethylene glycol-co-spiropyran) copolymers and block copolymers

We herein report on the synthesis and characterization of materials featuring a dual-responsive copolymer segment consisting of photo-responsive spiropyran (SPA) and temperature-responsive triethylene glycol acrylate (TEGA).

Substituent Effects and Mechanism in a Mechanochemical Reaction

We report the effect of substituents on the force-induced reactivity of a spiropyran mechanophore. Using single molecule force spectroscopy, force-rate behavior was determined for a series of spiropyran derivatives substituted with H, Br, or NO₂ para to the breaking spirocyclic C-O bond. The force required to achieve the rate constants of ∼10 s^-1 necessary to observe transitions in the force spectroscopy experiments depends on the substituent, with the more electron withdrawing substituent requiring less force. Rate constants at 375 pN were determined for all three derivatives, and the force-coupled rate dependence on substituent identity is well explained by a Hammett linear free energy relationship with a value of ρ = 2.9, consistent with a highly polar transition state with heterolytic, dissociative character. The methodology paves the way for further application of linear free energy relationships and physical organic methodologies to mechanochemical reactions, and the characterization of new force probes should enable additional, quantitative studies of force-coupled molecular behavior in polymeric materials.

Highly Sensitive, Anisotropic, and Reversible Stress/Strain-Sensors from Mechanochromic Nanofiber Composites

Mechanochromic polymeric systems are intensively investigated for real-time stress detection applications. However, an effective stress-sensing material must respond to low deformation with a detectable color change that should be quickly reversible upon force unloading. In this work, mechanochromic nanofibers made by electrospinning are used to produce mechanochromic nanofiber/poly(dimethylsiloxane) (PDMS) composites with isotropic and anisoptropic response. Due to chain alignment of spiropyran copolymer chains within the nanofibers, only very small strains are required to yield a mechanochromic response. Composites with aligned and isotropic nanofibers show anisotropic and isotropic mechanochromic behavior, respectively. Due to the special substitution pattern of spiropyran in the copolymer, the mechanochromic response of these nanofiber/PDMS composites shows fast reversibility upon force unloading. The outstanding benefit of using highly sensitive mechanochromic nanofibers as filler in composite materials allows the detection of directional stress and strain, and it is a step forward in the development of smart, mechanically responsive materials.

A Simply Synthesized, Tough Polyarylene with Transient Mechanochromic Response

A simple and high-yielding route to tough polyarylenes of the type poly(meta,meta,para-phenylene) (PmmpP) is developed. PmmpP is tough even in its as-synthesized state which has an intermediate molar mass of M_w ≈60 kg mol^-1 and exhibits outstanding mechanical properties at further optimized molecular weight of M_w =96 kg mol^-1 , E=0.9 GPa, ϵ=300 %. Statistical copolymers with para,para-spiropyran (SP) are mechanochromic, and the toughness allows mechanochromism to be investigated. Strained samples instantaneously lose color upon force release. DFT calculations show this phenomenon to be caused by the PmmpP matrix that allows build-up of sufficiently large forces to be transduced to SP, and the relatively unstable corresponding merocyanine (MC) form arising from the aromatic co-monomer. MC units covalently incorporated into PmmpP show a drastically reduced half life time of 3.1 s compared to 4.5 h obtained for SP derivatives with common 6-nitro substitution.

Alkyl-substituted spiropyrans: electronic effects, model compounds and synthesis of aliphatic main-chain copolymers

This work reports on the isomerisation behaviour of alkylated spiropyrans and aliphatic main chain spiropyran copolymers.