Study of Atmospheric Pressure Chemical Ionization Mechanism in Corona Discharge Ion Source with and without NH3 Dopant by Ion Mobility Spectrometry combined with Mass Spectrometry: A Theoretical and Experimental Study

Thermal decomposition and atmospheric pressure chemical ionization of alanine using ion mobility spectrometry and computational study

This study investigates the impact of thermal decomposition on the ion mobility spectrum of L-alanine using ion mobility spectrometry (IMS) and computational methods. By employing a post-injection delay system, we examined the evolution of ion peaks corresponding to thermal decomposition products and their interaction with protonated alanine. Experimental results revealed that the observed ion mobility spectra predominantly feature protonated isomers and adduct ions. Computational analysis using Density Functional Theory (DFT) predicted the thermodynamically favored structures and stabilities of these products. Findings indicate that protonation at the nitrogen site in alanine is more stable than at the oxygen site, and observed peaks correspond to protonated isomers and adducts formed with ammonium ions. Further investigations showed that thermal decomposition of alanine generates ammonia, contributing to the formation of new adduct ions. This research provides new insights into the behavior of amino acids under thermal conditions with implications for analytical chemistry and biochemistry.

Using dopants in the atmospheric pressure chemical ionization ion source to determine the site of protonation by ion mobility spectrometry

RATIONALE

Compounds like caffeine metabolites with more than one proton acceptor site can produce a mixture of isomeric protonated ions (protomers) in electrospray ionization and atmospheric pressure chemical ionization (APCI) ion sources. Discrimination between the protomers is of interest as the charge location influences ion structure and chemical and physical properties.

METHODS

Protonation of caffeine in an APCI ion source was studied using ion mobility spectrometry. The hydronium ions, H3O+(H2O)n, are the main reactant ions in the APCI ion source. Different dopant gases including NO2, NH3, and CH3NH2 were used to produce new reactant ions NO+, NH4 +, and CH3NH3 +, respectively. Density functional theory was employed to explain the experimental results and calculate the energies of the ionization reactions.

RESULTS

The ion mobility spectrum of caffeine showed three peaks. In the presence of NO2 dopant and NO+ reactant ion, caffeine was ionized via charge transfer and formation of M+ ion. As NH3 and CH3NH2 are stronger bases than H2O, the reactant ions NH4 + and CH3NH3 + selectively protonated the more basic site of caffeine, that is, the imidazole nitrogen. Using these dopants, we could attribute the first ion mobility peak to M+ ion, the second peak to the protonation of caffeine at the carbonyl oxygen atom, and the third peak to the protonation of the imidazole nitrogen atom. The calculated collisional cross-sections of M+ and the protomers of caffeine confirmed the peaks' assignment.

CONCLUSIONS

The criterion for the selection of an appropriate dopant is that its proton affinity (PA) should be between those of the proton acceptor sites of the molecule studied.

Recent advances in mass spectrometry techniques for atmospheric chemistry research on molecular-level

The Earth's atmosphere is composed of an enormous variety of chemical species associated with trace gases and aerosol particles whose composition and chemistry have critical impacts on the Earth's climate, air quality, and human health. Mass spectrometry analysis as a powerful and popular analytical technique has been widely developed and applied in atmospheric chemistry for decades. Mass spectrometry allows for effective detection, identification, and quantification of a broad range of organic and inorganic chemical species with high sensitivity and resolution. In this review, we summarize recently developed mass spectrometry techniques, methods, and applications in atmospheric chemistry research in the past several years on molecular-level. Specifically, new developments of ion-molecule reactors, various soft ionization methods, and unique coupling with separation techniques are highlighted. The new mass spectrometry applications in laboratory studies and field measurements focused on improving the detection limits for traditional and emerging volatile organic compounds, characterizing multiphase highly oxygenated molecules, and monitoring particle bulk and surface compositions.

Formic Acid as a Dopant for Atmospheric Pressure Chemical Ionization for Negative Polarity of Ion Mobility Spectrometry and Mass Spectrometry

Formic acid (FA) is introduced as a potent dopant for atmospheric pressure chemical ionization (APCI) for ion mobility spectrometry (IMS) and mass spectrometry (MS). The mechanism of chemical ionization with the FA dopant was studied in the negative polarity using a corona discharge (CD)-IMS-MS technique in air. Standard reactant ions of the negative polarity present in air are O2-·(CO2)n·(H2O)m (m = 0, 1 and n = 1, 2) clusters. Introduction of the FA dopant resulted in the production of HCOO-·FA reactant ions. The effect of the FA dopant on the APCI of different classes of compounds was investigated, including plant hormones, pesticides, acidic drugs, and explosives. FA dopant APCI resulted in deprotonation and/or adduct ion formation, [M - H]- and [M + HCOO]-, respectively. Supporting density functional theory (DFT) calculations showed that the ionization mechanism depended on the gas-phase acidity of the compounds. FA dopant APCI led to the improvement of detection sensitivity, suppression of fragmentation, and changes in the ion mobilities of the analyte ions for analytes with suitable molecular structures and gas acidity.

Effect of ion source polarity and dopants on the detection of auxin plant hormones by ion mobility-mass spectrometry

Ion mobility spectrometry (IMS) equipped with a corona discharge (CD) ion source was used for measurement of three auxin plant hormones including indole-3-acetic acid (IAA), indole-3-propionic acid (IPA), and indole-3-butyric acid (IBA). The measurements were performed in both positive and negative polarities of the CD ion source. Dopant gases NH₃, CCl₄, and CHBr₃ were used to modify the ionization mechanism. A time-of-flight mass spectrometer (TOFMS) orthogonal to the IMS cell was used for identification of the product ions. Density functional theory was used to rationalize formation of the ions, theoretically. The mixtures of the auxins were analyzed by CD-IMS. The separation performance depended on the ion polarity and the dopants. In the positive polarity without dopants, auxins were ionized via protonation and three distinguished peaks were observed. Application of NH₃ dopant resulted in two ionization channels, protonation, and NH₄⁺ attachment leading to peak overlapping. In the negative polarity, two ionization reactions were operative, via deprotonation and O₂^- attachment. The separation of the monomer peaks was not achieved while the peaks of anionic dimers [2 M-H]^- were separated well. The best LOD (4 ng) was obtained in negative polarity with CCl₄ dopant. Methylation (esterification) of IAA improved LODs by about one order.

Significance of Competitive Reactions in an Atmospheric Pressure Chemical Ionization Ion Source: Effect of Solvent

Ionization of organic compounds with different structural and energetic properties including benzene derivatives, polycyclic aromatic hydrocarbons (PAHs), ketones, and polyenes was studied using a commercial atmospheric pressure corona discharge (APCI) ion source on a drift tube ion mobility-quadrupole-time-of-flight mass spectrometer (IM-QTOFMS). It was found that the studied cohort of compounds can be experimentally ionized via protonation, charge transfer, and hydride abstraction leading to formation of [M + H]⁺, [M]^+•, and [M - H]⁺ species, respectively. By experimentally monitoring the product ions and comparing the thermodynamic data for different ionization paths, it was proposed that NO⁺ is one of the main reactant ions (RIs) in the ion source used. Of particular focus in this work were theoretical and experimental studies of the effect of solvents frequently used for analytical applications with this ion source (acetonitrile, methanol, and chloroform) on the ionization mechanisms. In methanol, the studied compounds were observed to be ionized mainly via proton transfer while acetonitrile suppressed the protonation of compounds and enhanced their ionization via charge transfer and hydride abstraction. Use of chloroform as a solvent led to formation of CHCl₂⁺ as an alternative reactant ion (RI) to ionize the analytes via electrophilic substitution. Density functional theory (DFT) was used to study the different paths of ionization. The theoretical and experimental results showed that by using only the absolute thermodynamic data, the real ionization path cannot be determined and the energies of all competing processes such as charge transfer, protonation, and hydride abstraction need to be compared.

Exploring and modeling the ion mobility spectrometry of perindopril: Example of protonation-dissociation reactions in large molecules

The current research is constructed for considering the chemical ionization and dissociation of perindopril in the positive mode of corona discharge ion mobility spectrometry. Four product ion peaks are observed in the ion mobility spectrum of perindopril erbumine at the cell temperature of 473 K. These peaks are assigned through the obtained intensity variation analysis in the ion mobility spectra over the elapsed time accompanied by the calculations backed by the validated density functional theory (DFT). In this regard, the most stable ionic species associated with each peak and the corresponding reliable generation pathways are found by the well-confirmed meta hybrid density functional method, M06-2X. The peaks are assigned to the protonated perindopril and its dissociation products, including counter ion and the related fragment ions. However, the structures of the neutral perindopril in the gas phase are thoroughly assessed to find a more stable one. The predicted chemical ionization products by the theory are in excellent agreement with our presented experiment here. Theoretical evaluations demonstrated that the production of a fragment by dissociation process occurs when perindopril gets a proton from the ionization region. Also, without protons, there is no dissociation process. Therefore, our mechanism investigated here is the proton transfer one. All possible sites of perindopril are considered theoretically for protonation along with their possible reactions. In addition to the computed PES, the assigned ions for obtained spectra are confirmed by the computed equilibrium constants and rate constants. Our theoretical results show that the peak of the main fragment is for M-CH₃ CH₂ OH produced by a reaction pathway involving no barrier. This study opens new perspectives in interpreting large molecules spectra for future studies.

Using gas-phase chloride attachment for selective detection of morphine in a morphine/codeine mixture by ion mobility spectrometry

RATIONALE

Morphine and codeine are two important compounds of the opiate family that have vast applications in medicine. Several techniques have been reported for the determination of these opiates. Although ion mobility spectrometry (IMS) in positive ion mode can be applied for detection of both morphine and codeine, this technique on its own cannot detect a mixture of these two compounds because of the overlapping of their peaks.

METHODS

An IMS instrument equipped with a corona discharge ion source operating in negative ion mode was used for the detection of anionic clusters of morphine and codeine. In normal negative ion mode, NO_x ^- , CO₃ ^- , and O_n ^- act as the main reactant ions (RIs) which can deprotonate the analytes. We also used chloroform as a dopant to produce Cl^- as an alternative RI.

RESULTS

Morphine has a phenolic and an alcoholic OH group, while codeine bears only an alcoholic OH group. Because the phenolic OH group is more acidic, only morphine is deprotonated in negative ion mode in a morphine/codeine mixture. Furthermore, since morphine has two OH groups that can act as hydrogen-bond donors, it acts as an anion receptor. Hence, in the presence of chloroform where Cl^- acts as the RI, morphine traps the Cl^- anion to form a morphine-Cl^- (Mor.Cl^- ) adduct ion, while because of its structure codeine does not have this capability.

CONCLUSIONS

Using the difference in the structures of morphine and codeine, two ionization methods were proposed for selective detection of morphine. Morphine is more acidic than codeine and has greater anion-receiving capability than codeine. Hence, it can both be deprotonated and form a adduct anion with Cl^- . The Cl^- attachment method is recommended for measurements at ambient temperature.

Rapid and simple determination of gabapentin in urine by ion mobility spectrometry

Gabapentin is a pharmacological agent used in the treatment of epileptic seizures. In this work, a fast method is proposed for determination of gabapentin in urine by ion mobility spectrometry (IMS) without any extraction and derivatization. ZnCl₂ was used as an effective protein precipitating reagent to remove the urine proteins. It was found that urea content of urine interferes with detection of gabapentin by IMS. By applying a delay on the carrier gas flow after injection of the sample, we could solve the urea interference to achieve gabapentin signal recovery of ∼70% in urine relative to that in water.

Mechanism of atmospheric pressure chemical ionization of morphine, codeine, and thebaine in corona discharge-ion mobility spectrometry: Protonation, ammonium attachment, and carbocation formation

Atmospheric pressure chemical ionizations (APCIs) of morphine, codeine, and thebaine were studied in a corona discharge ion source using ion mobility spectrometry (IMS) at temperature range of 100°C-200°C. Density functional theory (DFT) at the B3LYP/6-311++G(d,p) and M062X/6-311++G(d,p) levels of theory were used to interpret the experimental data. It was found that in the presence of H₃ O⁺ as reactant ion (RI), ionization of morphine and codeine proceeds via both the protonation and carbocation formation, whereas thebaine participates only in protonation. Carbocation formation (fragmentation) was diminished with decrease in the temperature. At lower temperatures, proton-bound dimers of the compounds were also formed. Ammonia was used as a dopant to produce NH₄ ⁺ as an alternative RI. In the presence of NH₄ ⁺ , proton transfer from ammonium ion to morphine, codeine, and thebaine was the dominant mechanism of ionization. However, small amount of ammonium attachment was also observed. The theoretical calculations showed that nitrogen atom of the molecules is the most favorable proton acceptor site while the oxygen atoms participate in ammonium attachment. Furthermore, formation of the carbocations is because of the water elimination from the protonated forms of morphine and codeine.

Understanding Gas Phase Ion Chemistry Is the Key to Reliable Selected Ion Flow Tube-Mass Spectrometry Analyses

Ion-molecule reactions (IMR) are at the very core of trace gas analyses in modern chemical ionization (CI) mass spectrometer instruments, which are increasingly being used in diverse areas of research and industry. The focus of this Perspective is on the ion chemistry that underpins gas-phase analytical CI methods. Special attention is given to the soft chemical ionization method known as selected ion flow tube-mass spectrometry (SIFT-MS). The processes involved in the ion chemistry of the reagent cations, H₃O⁺, NO⁺, and O₂^+•, and the anions, O^-•, O₂^-•, OH^-, and NO₂^-, are discussed in some detail. Stressed throughout is that an understanding of these processes is mandatory to obtain reliable analyses of humid gaseous media such as ambient air and exhaled breath. It is indicated that further research is needed to understand the consequences of replacing helium in some situations by the more readily available nitrogen as the carrier gas in SIFT-MS.

Accurate Evaluation of Potential Calibration Standards for Ion Mobility Spectrometry

Ion mobility spectrometry (IMS)-based instruments have historically been accurate to, at best, ±2% of the reduced ion mobility (K₀) value of the chemical of interest. Fielded IMS-based detectors that are in use for hazardous and illicit substance detection are subject to false-positive alarms because of this inaccuracy and the resulting wide alarm windows, which are required to maintain a high rate of true-positive alarms. To reduce false-positive alarm rates and improve the accuracy of any IMS-based instrument, accurate K₀ values of an ion mobility reference standard need to be used for ion mobility scale calibration. However, a suitable calibrant has yet to be accurately analyzed and agreed upon by the IMS community. In this study, we have chosen five potential IMS calibrants on the basis of their rating against seven criteria for suitable standards and analyzed them as a function of drift gas temperature and humidity using an accurate ion mobility instrument. Recommendations are made herein for each potential calibrant's suitability as a standard for the wider IMS community.

Fast quantification of whisky lactone in oak wood by ion mobility spectrometer

An Ion Mobility Spectrometry (IMS) apparatus has been used to detect the β-methyl-γ-octalactone (Whisky Lactone - WL) standard in the air and as well WL vapours originating from the oak wood samples. The IMS was equipped with Atmospheric Pressure Chemical Ionisation (APCI) ion source based on a Corona Discharge (CD) and was operated in the positive polarity. The IMS spectrum of WL exhibits two peaks, a monomer with reduced ion mobility value K₀ = 1.39 cm²V^-1s^-1 and dimer K₀ = 1.09 cm²V^-1s^-1. Using Ion Mobility orthogonal acceleration Time of Flight mass spectrometer (IMS-oaTOF MS) these peaks were identified as protonated monomer M^.H^+.(H₂O)_0,1 and dimer M₂^.H⁺ ions respectively. The limit of detection study resulted in LOD for WL of 50 ppb_v. Detection of WL from oak wood samples of different "Quality Level" (QL) categories (categories 1 to 10), indicated strong correlation between the QL category number and the response of the IMS.

Combined secondary electrospray and corona discharge ionization (SECDI) for improved detection of explosive vapors using drift tube ion mobility spectrometry

Secondary electrospray corona discharge ionization (SECDI) combines the principles of secondary electrospray ionization (SESI) and corona discharge (CD) to achieve higher sensitivity, which is demonstrated through the detection of 2,4,6-trinitrotoluene (TNT) and 2,6-dinitrotoluene (2,6-DNT) vapors using ion mobility spectrometry (IMS). Using SECDI, enhancements in the IMS signal for TNT and 2,6-DNT vapors at trace concentrations are as much as 2-26 times that observed with CD or SESI alone. The enhancement in sensitivity is hypothesized to result from an increase in ionization efficiency driven by a higher number of reactant ions associated with SECDI compared to either technique individually. The ability of SECDI to achieve higher sensitivity without the aid of dopant molecules demonstrates its merit as an alternative ionization technique.

Effect of Basicity and Structure on the Hydration of Protonated Molecules, Proton-Bound Dimer and Cluster Formation: An Ion Mobility-Time of Flight Mass Spectrometry and Theoretical Study

Protonation, hydration, and cluster formation of ammonia, formaldehyde, formic acid, acetone, butanone, 2-ocatanone, 2-nonanone, acetophenone, ethanol, pyridine, and its derivatives were studied by IMS-TOFMS technique equipped with a corona discharge ion source. It was found that tendency of the protonated molecules, MH⁺, to participate in hydration or cluster formation depends on the basicity of M. The molecules with higher basicity were hydrated less than those with lower basicity. The mass spectra of the low basic molecules such as formaldehyde exhibited larger clusters of M_nH⁺(H₂O)_n, while for compounds with high basicity such as pyridine, only MH⁺ and MH⁺M peaks were observed. The results of DFT calculations show that enthalpies of hydrations and cluster formation decrease as basicities of the molecules increases. Using comparison of mass spectra of formic acid, formaldehyde, and ethanol, effect of structure on the cluster formation was also investigated. Formation of symmetric (MH⁺M) and asymmetric proton-bound dimers (MH⁺N) was studied by ion mobility and mass spectrometry techniques. Both theoretical and experimental results show that asymmetric dimers are formed more easily between molecules (M and N) with comparable basicity. As the basicity difference between M and N increases, the enthalpy of MH⁺N formation decreases.