Catalytic Mechanism of Fatty Acid Photodecarboxylase: On the Detection and Stability of the Initial Carbonyloxy Radical Intermediate

In fatty acid photodecarboxylase (FAP), light-induced formation of the primary radical product RCOO⋅ from fatty acid RCOO- occurs in 300 ps, upon which CO2 is released quasi-immediately. Based on the hypothesis that aliphatic RCOO⋅ (spectroscopically uncharacterized because unstable) absorbs in the red similarly to aromatic carbonyloxy radicals such as 2,6-dichlorobenzoyloxy radical (DCB⋅), much longer-lived linear RCOO⋅ has been suggested recently. We performed quantum chemical reaction pathway and spectral calculations. These calculations are in line with the experimental DCB⋅ decarboxylation dynamics and spectral properties and show that in contrast to DCB⋅, aliphatic RCOO⋅ radicals a) decarboxylate with a very low energetic barrier and on the timescale of a few ps and b) exhibit little red absorption. A time-resolved infrared spectroscopy experiment confirms very rapid, ≪300 ps RCOO⋅ decarboxylation in FAP. We argue that this property is required for the observed high quantum yield of hydrocarbons formation by FAP.

Multiscale Investigation of the Mechanism and Selectivity of CO2 Hydrogenation over Rh(111)

CO2 hydrogenation over Rh catalysts comprises multiple reaction pathways, presenting a wide range of possible intermediates and end products, with selectivity toward either CO or methane being of particular interest. We investigate in detail the reaction mechanism of CO2 hydrogenation to the single-carbon (C1) products on the Rh(111) facet by performing periodic density functional theory (DFT) calculations and kinetic Monte Carlo (kMC) simulations, which account for the adsorbate interactions through a cluster expansion approach. We observe that Rh readily facilitates the dissociation of hydrogen, thus contributing to the subsequent hydrogenation processes. The reverse water-gas shift (RWGS) reaction occurs via three different reaction pathways, with CO hydrogenation to the COH intermediate being a key step for CO2 methanation. The effects of temperature, pressure, and the composition ratio of the gas reactant feed are considered. Temperature plays a pivotal role in determining the surface coverage and adsorbate composition, with competitive adsorption between CO and H species influencing the product distribution. The observed adlayer configurations indicate that the adsorbed CO species are separated by adsorbed H atoms, with a high ratio of H to CO coverage on the Rh(111) surface being essential to promote CO2 methanation.

Degradation of Butylated Hydroxyanisole by the Combined Use of Peroxymonosulfate and Ferrate(VI): Reaction Kinetics, Mechanism and Toxicity Evaluation

Butylated hydroxyanisole (BHA), a synthetic phenolic antioxidant (SPA), is now widely present in natural waters. To improve the degradation efficiency of BHA and reduce product toxicity, a combination of peroxymonosulfate (PMS) and Ferrate(VI) (Fe(VI)) was used in this study. We systematically investigated the reaction kinetics, mechanism and product toxicity in the degradation of BHA through the combined use of PMS and Fe(VI). The results showed that PMS and Fe(VI) have synergistic effects on the degradation of BHA. The effects of operational factors, including PMS dosage, pH and coexisting ions (Cl-, SO42-, HCO3-, K+, NH4+ and Mg2+), and different water matrices were investigated through a series of kinetic experiments. When T = 25 °C, the initial pH was 8.0, the initial BHA concentration was 100 μM, the initial concentration ratio of [PMS]0:[Fe(VI)]0:[BHA]0 was 100:1:1 and the degradation rate could reach 92.4% within 30 min. Through liquid chromatography time-of-flight mass spectrometry (LC-TOF-MS) identification, it was determined that the oxidation pathway of BHA caused by PMS/Fe(VI) mainly includes hydroxylation, ring-opening and coupling reactions. Density functional theory (DFT) calculations indicated that •OH was most likely to attack BHA and generate hydroxylated products. The comprehensive comparison of product toxicity results showed that the PMS/Fe(VI) system can effectively reduce the environmental risk of a reaction. This study contributes to the development of PMS/Fe(VI) for water treatment applications.

Sandwich Immunosensor Based on Particle Motion: How Do Reactant Concentrations and Reaction Pathways Determine the Time-Dependent Response of the Sensor?

To control and optimize the speed of a molecular biosensor, it is crucial to quantify and understand the mechanisms that underlie the time-dependent response of the sensor. Here, we study how the kinetic properties of a particle-based sandwich immunosensor depend on underlying parameters, such as reactant concentrations and the size of the reaction chamber. The data of the measured sensor responses could be fitted with single-exponential curves, with characteristic response times that depend on the analyte concentration and the binder concentrations on the particle and substrate. By comparing characteristic response times at different incubation configurations, the data clarifies how two distinct reaction pathways play a role in the sandwich immunosensor, namely, analyte binding first to particles and thereafter to the substrate, and analyte binding first to the substrate and thereafter to a particle. For a concrete biosensor design, we found that the biosensor is dominated by the reaction pathway where analyte molecules bind first to the substrate and thereafter to a particle. Within this pathway, the binding of a particle to the substrate-bound analyte dominates the sensor response time. Thus, the probability of a particle interacting with the substrate was identified as the main direction to improve the speed of the biosensor while maintaining good sensitivity. We expect that the developed immunosensor and research methodology can be generally applied to understand the reaction mechanisms and optimize the kinetic properties of sandwich immunosensors with particle labels.

Reaction Steps in Heterogeneous Photocatalytic Oxidation of Toluene in Gas Phase-A Review

A review of the current literature shows there is no clear consensus regarding the reaction mechanisms of air-borne aromatic compounds such as toluene by photocatalytic oxidation. Potential oxidation reactions over TiO2 or TiO2-based catalysts under ultraviolet and visible (UV/VIS) illumination are most commonly considered for removal of these pollutants. Along the pathways from a model pollutant, toluene, to final mineralization products (CO2 and H2O), the formation of several intermediates via specific reactions include parallel oxidation reactions and formation of less-reactive intermediates on the TiO2 surface. The latter may occupy active adsorption sites and causes drastic catalyst deactivation in some cases. Major hazardous gas-phase intermediates are benzene and formaldehyde, classified by the International Agency for Research on Cancer (IARC) as Group 1 carcinogenic compounds. Adsorbed intermediates leading to catalyst deactivation are benzaldehyde, benzoic acid, and cresols. The three most typical pathways of toluene photocatalytic oxidation are reviewed: methyl group oxidation, aromatic ring oxidation, and aromatic ring opening.

Temporal Evolution of Morphology, Composition, and Structure in the Formation of Colloidal High-Entropy Intermetallic Nanoparticles

Morphology-controlled nanoparticles of high entropy intermetallic compounds are quickly becoming high-value targets for catalysis. Their ordered structures with multiple distinct crystallographic sites, coupled with the "cocktail effect" that emerges from randomly mixing a large number of elements, yield catalytic active sites capable of achieving advanced catalytic functions. Despite this growing interest, little is known about the pathways by which high entropy intermetallic nanoparticles form and grow in solution. As a result, controlling their morphology remains challenging. Here, we use the high entropy intermetallic compound (Pd,Rh,Ir,Pt)Sn, which adopts a NiAs-related crystal structure, as a model system for understanding how nanoparticle morphology, composition, and structure evolve during synthesis in solution using a slow-injection reaction. By performing a time-point study, we establish the initial formation of palladium-rich cube-like Pd-Sn seeds onto which the other metals deposit over time, concomitant with continued incorporation of tin. For (Pd,Rh,Ir,Pt)Sn, growth occurs on the corners, resulting in a sample having a mixture of flower-like and cube-like morphologies. We then synthesize and characterize a library of 14 distinct intermetallic nanoparticle systems that comprise all possible binary, ternary, and quaternary constituents of (Pd,Rh,Ir,Pt)Sn. From these studies, we correlated compositions, morphologies, and growth pathways with the constituent elements and their competitive reactivities, ultimately mapping out a framework that rationalizes the key features of the high entropy (Pd,Rh,Ir,Pt)Sn intermetallic nanoparticles based on those of their simpler constituents. We then validated these design guidelines by applying them to the synthesis of a morphologically pure variant of flowerlike (Pd,Rh,Ir,Pt)Sn particles as well as a series of (Pd,Rh,Ir,Pt)Sn particles with tunable morphologies based on control of composition.

DFT Surface Infers Ten-Vertex Cationic Carboranes from the Corresponding Neutral closo Ten-Vertex Family: The Computed Background Confirming Their Experimental Availability

Modern computational protocols based on the density functional theory (DFT) infer that polyhedral closo ten-vertex carboranes are key starting stationary states in obtaining ten-vertex cationic carboranes. The rearrangement of the bicapped square polyhedra into decaborane-like shapes with open hexagons in boat conformations is caused by attacks of N-heterocyclic carbenes (NHCs) on the closo motifs. Single-point computations on the stationary points found during computational examinations of the reaction pathways have clearly shown that taking the "experimental" NHCs into account requires the use of dispersion correction. Further examination has revealed that for the purposes of the description of reaction pathways in their entirety, i.e., together with all transition states and intermediates, a simplified model of NHCs is sufficient. Many of such transition states resemble in their shapes those that dictate Z-rearrangement among various isomers of closo ten-vertex carboranes. Computational results are in very good agreement with the experimental findings obtained earlier.

Chemical Insights into the Formation of Colloidal High Entropy Alloy Nanoparticles

Nanoparticles of high entropy alloys (HEAs) have distinct properties that result from their high surface-to-volume ratios coupled with synergistic interactions among their five or more constituent elements, which are randomly distributed throughout a crystalline lattice. Methods to synthesize HEA nanoparticles are emerging, including solution approaches that yield colloidal products. However, the complex multielement compositions of HEA nanoparticles make it challenging to identify and understand their reaction chemistry and the pathways by which they form, which hinders their rational synthesis. Here, we demonstrate the synthesis and elucidate the reaction pathways of seven colloidal HEA nanoparticle systems that contain various combinations of noble metals (Pd, Pt, Rh, Ir), 3d transition metals (Ni, Fe, Co), and a p-block element (Sn). The nanoparticles were synthesized by slowly injecting a solution containing all five constituent metal salts into oleylamine and octadecene at 275 °C. Using NiPdPtRhIr as a lead system, we confirmed the homogeneous colocalization of all five elements and achieved tunable compositions by varying their ratios. We also observed heterogeneities, including Pd-rich regions, in a subpopulation of the NiPdPtRhIr sample. Halting the reaction at early time points and characterizing the isolated products revealed a time-dependent composition evolution from Pd-rich NiPd seeds to the final NiPdPtRhIr HEA. Similar reactions applied to FePdPtRhIr, CoPdPtRhIr, NiFePdPtIr, and NiFeCoPdPt, with modified conditions to most efficiently incorporate all five elements into each HEA, also revealed similar Pd-rich seeds with system-dependent differences in the rates and sequences of element uptake into the nanoparticles. When moving to SnPdPtRhIr and NiSnPdPtIr, the time-dependent formation pathway was more consistent with simultaneous coreduction rather than through formation of reactive seeds. These studies reveal important similarities and differences among the pathways by which different colloidal HEA nanoparticles form using the same synthetic method, as well as establish generality. The results provide guidelines for incorporating a range of different elements into HEA nanoparticles, ultimately providing fundamental knowledge about how to define and optimize synthetic protocols, expand into different HEA nanoparticle systems, and achieve high phase purity.

Activation of Ethanol Transformation on Copper-Containing SBA-15 and MnSBA-15 Catalysts by the Presence of Oxygen in the Reaction Mixture

The aim of this study was to get insight into the pathway of the acetaldehyde formation from ethanol (the rate-limiting step in the production of 1,3-butadiene) on Cu-SBA-15 and Cu-MnSBA-15 mesoporous molecular sieves. Physicochemical properties of the catalysts were investigated by XRD, N₂ ads/des, Uv-vis, XPS, EPR, pyridine adsorption combined with FTIR, 2-propanol decomposition and 2,5-hexanedione cyclization and dehydration test reactions. Ethanol dehydrogenation to acetaldehyde (without and with oxygen) was studied in a flow system using the FTIR technique. In particular, the effect of Lewis acid and basic (Lewis and BrØnsted) sites, and the oxygen presence in the gas reaction mixture with ethanol on the activity and selectivity of copper catalysts, was assessed and discussed. Two different reaction pathways have been proposed depending on the reaction temperature and the presence or absence of oxygen in the flow of the reagents (via ethoxy intermediate way at 593 K, in ethanol flow, or ethoxide intermediate way at 473 K in the presence of ethanol and oxygen in the reaction mixture).

Plasma-Catalytic CO2 Hydrogenation over a Pd/ZnO Catalyst: In Situ Probing of Gas-Phase and Surface Reactions

Plasma-catalytic CO₂ hydrogenation is a complex chemical process combining plasma-assisted gas-phase and surface reactions. Herein, we investigated CO₂ hydrogenation over Pd/ZnO and ZnO in a tubular dielectric barrier discharge (DBD) reactor at ambient pressure. Compared to the CO₂ hydrogenation using Plasma Only or Plasma + ZnO, placing Pd/ZnO in the DBD almost doubled the conversion of CO₂ (36.7%) and CO yield (35.5%). The reaction pathways in the plasma-enhanced catalytic hydrogenation of CO₂ were investigated by in situ Fourier transform infrared (FTIR) spectroscopy using a novel integrated in situ DBD/FTIR gas cell reactor, combined with online mass spectrometry (MS) analysis, kinetic analysis, and emission spectroscopic measurements. In plasma CO₂ hydrogenation over Pd/ZnO, the hydrogenation of adsorbed surface CO₂ on Pd/ZnO is the dominant reaction route for the enhanced CO₂ conversion, which can be ascribed to the generation of a ZnO _x overlay as a result of the strong metal-support interactions (SMSI) at the Pd-ZnO interface and the presence of abundant H species at the surface of Pd/ZnO; however, this important surface reaction can be limited in the Plasma + ZnO system due to a lack of active H species present on the ZnO surface and the absence of the SMSI. Instead, CO₂ splitting to CO, both in the plasma gas phase and on the surface of ZnO, is believed to make an important contribution to the conversion of CO₂ in the Plasma + ZnO system.

Heuristic shortest hyperpaths in cell signaling hypergraphs

BACKGROUND

Cell signaling pathways, which are a series of reactions that start at receptors and end at transcription factors, are basic to systems biology. Properly modeling the reactions in such pathways requires directed hypergraphs, where an edge is now directed between two sets of vertices. Inferring a pathway by the most parsimonious series of reactions corresponds to finding a shortest hyperpath in a directed hypergraph, which is NP-complete. The current state-of-the-art for shortest hyperpaths in cell signaling hypergraphs solves a mixed-integer linear program to find an optimal hyperpath that is restricted to be acyclic, and offers no efficiency guarantees.

RESULTS

We present, for the first time, a heuristic for general shortest hyperpaths that properly handles cycles, and is guaranteed to be efficient. We show the heuristic finds provably optimal hyperpaths for the class of singleton-tail hypergraphs, and also give a practical algorithm for tractably generating all source-sink hyperpaths. The accuracy of the heuristic is demonstrated through comprehensive experiments on all source-sink instances from the standard NCI-PID and Reactome pathway databases, which show it finds a hyperpath that matches the state-of-the-art mixed-integer linear program on over 99% of all instances that are acyclic. On instances where only cyclic hyperpaths exist, the heuristic surpasses the state-of-the-art, which finds no solution; on every such cyclic instance, enumerating all source-sink hyperpaths shows the solution found by the heuristic was in fact optimal.

CONCLUSIONS

The new shortest hyperpath heuristic is both fast and accurate. This makes finding source-sink hyperpaths, which in general may contain cycles, now practical for real cell signaling networks.

AVAILABILITY

Source code for the hyperpath heuristic in a new tool we call Hhugin (as well as for hyperpath enumeration, and all dataset instances) is available free for non-commercial use at http://hhugin.cs.arizona.edu.

Exploring and modeling the ion mobility spectrometry of perindopril: Example of protonation-dissociation reactions in large molecules

The current research is constructed for considering the chemical ionization and dissociation of perindopril in the positive mode of corona discharge ion mobility spectrometry. Four product ion peaks are observed in the ion mobility spectrum of perindopril erbumine at the cell temperature of 473 K. These peaks are assigned through the obtained intensity variation analysis in the ion mobility spectra over the elapsed time accompanied by the calculations backed by the validated density functional theory (DFT). In this regard, the most stable ionic species associated with each peak and the corresponding reliable generation pathways are found by the well-confirmed meta hybrid density functional method, M06-2X. The peaks are assigned to the protonated perindopril and its dissociation products, including counter ion and the related fragment ions. However, the structures of the neutral perindopril in the gas phase are thoroughly assessed to find a more stable one. The predicted chemical ionization products by the theory are in excellent agreement with our presented experiment here. Theoretical evaluations demonstrated that the production of a fragment by dissociation process occurs when perindopril gets a proton from the ionization region. Also, without protons, there is no dissociation process. Therefore, our mechanism investigated here is the proton transfer one. All possible sites of perindopril are considered theoretically for protonation along with their possible reactions. In addition to the computed PES, the assigned ions for obtained spectra are confirmed by the computed equilibrium constants and rate constants. Our theoretical results show that the peak of the main fragment is for M-CH₃ CH₂ OH produced by a reaction pathway involving no barrier. This study opens new perspectives in interpreting large molecules spectra for future studies.

X-Ray Spectromicroscopy Investigation of Heterogeneous Sodiation in Hard Carbon Nanosheets with Vertically Oriented (002) Planes

Hard carbon (HC) is a promising anode material for sodium-ion batteries, but the performance remains unsatisfactory and the sodiation mechanism in HC is one of the most debated topics. Here, from self-assembled cellulose nanocrystal sheets with crystallographic texture, unique HC nanosheets with vertically oriented (002) planes are fabricated and used as a model HC to investigate the sodiation mechanisms using synchrotron scanning transmission X-ray microscopy (STXM) coupled with analytical transmission electron microscopy (TEM). The model HC simplifies the 3D sodiation in a typical HC particle into a 2D sodiation, which facilitates the visualization of phase transformation at different states of charge. The results for the first time unveil that the sodiation in HC initiates heterogeneously, with multiple propagation fronts proceeding simultaneously, eventually merging into larger aggregates. The spatial correlation between the preferential adsorption and nucleation sites suggests that the heterogeneous nucleation is driven by the local Na-ion concentration, which is determined by defects or heteroatoms that have strong binding to Na ions. By identifying intercalation as the dominant sodium storage mechanism in the model HC, the findings highlight the importance of engineering the graphene layer orientation and the structural heterogeneity of edge sites to enhance the performances.

Crystal-Structure-Dependent Photocatalytic Redox Activity and Reaction Pathways over Ga2O3 Polymorphs

Differentiated crystal structures generally affect the surface physicochemical properties of catalysts, causing variety in catalytic activity between polymorphs. However, the underlying mechanism has not been completely revealed, especially the influence of surface physicochemical properties on photocatalytic redox activity and the reaction mechanism. In this work, we reveal the mechanism of surface redox properties on different crystal forms of gallium oxide from a molecular level. α-Ga₂O₃ and β-Ga₂O₃ exhibit a slight difference in catalytic oxidation of organic pollutants due to comprehensive influencing factors, including their valence band position, reactive oxygen species, and pore structure properties related to the adsorption-reaction-desorption process. But the catalytic reduction ability of CO₂ is obviously different due to the large differences of interaction between the surface of crystal structures and CO₂ molecules, which are critical to determine the catalytic performance and reaction pathways. The enhanced adsorption and activation of CO₂ on the α-Ga₂O₃ surface could promote the reduction reaction efficiency. Moreover, the large energy barrier of CH₂* formation on β-Ga₂O₃ makes the formation of methane (CH₄) relatively difficult compared to that on α-Ga₂O₃. The yield rate of CH₄ (1.8 μmol·g^-1·h^-1) on α-Ga₂O₃ is three times better than that on β-Ga₂O₃ (CH₄: 0.6 μmol·g^-1·h^-1). The current findings can offer novel insights into the understanding of crystal-structure-dependent photocatalytic performances and the design of new catalysts applied in energy conversion and environmental purification by crystal structure-tuning.

New Mechanistic and Reaction Pathway Insights for Oxidative Coupling of Methane (OCM) over Supported Na2 WO4 /SiO2 Catalysts

The complex structure of the catalytic active phase, and surface-gas reaction networks have hindered understanding of the oxidative coupling of methane (OCM) reaction mechanism by supported Na₂ WO₄ /SiO₂ catalysts. The present study demonstrates, with the aid of in situ Raman spectroscopy and chemical probe (H₂ -TPR, TAP and steady-state kinetics) experiments, that the long speculated crystalline Na₂ WO₄ active phase is unstable and melts under OCM reaction conditions, partially transforming to thermally stable surface Na-WO_x sites. Kinetic analysis via temporal analysis of products (TAP) and steady-state OCM reaction studies demonstrate that (i) surface Na-WO_x sites are responsible for selectively activating CH₄ to C₂ H_x and over-oxidizing CH_y to CO and (ii) molten Na₂ WO₄ phase is mainly responsible for over-oxidation of CH₄ to CO₂ and also assists in oxidative dehydrogenation of C₂ H₆ to C₂ H₄ . These new insights reveal the nature of catalytic active sites and resolve the OCM reaction mechanism over supported Na₂ WO₄ /SiO₂ catalysts.

Study of the Synchrotron Photoionization Oxidation of Alpha-Angelica Lactone (AAL) Initiated by O(3P) at 298, 550, and 700 K

In recent years, biofuels have been receiving significant attention because of their potential for decreasing carbon emissions and providing a long-term renewable solution to unsustainable fossil fuels. Currently, lactones are some of the alternatives being produced. Many lactones occur in a range of natural substances and have many advantages over bioethanol. In this study, the oxidation of alpha-angelica lactone initiated by ground-state atomic oxygen, O(³P), was studied at 298, 550, and 700 K using synchrotron radiation coupled with multiplexed photoionization mass spectrometry at the Lawrence Berkeley National Lab (LBNL). Photoionization spectra and kinetic time traces were measured to identify the primary products. Ketene, acetaldehyde, methyl vinyl ketone, methylglyoxal, dimethyl glyoxal, and 5-methyl-2,4-furandione were characterized as major reaction products, with ketene being the most abundant at all three temperatures. Possible reaction pathways for the formation of the observed primary products were computed using the CBS–QB3 composite method.

Atomically Dispersed Iron Metal Site in a Porphyrin-Based Metal-Organic Framework for Photocatalytic Nitrogen Fixation

The rational design of photocatalysts for efficient nitrogen (N₂) fixation at ambient conditions is important for revolutionizing ammonia production and quite challenging because the great difficulty lies in the adsorption and activation of the inert N₂. Inspired by a biological molecule, chlorophyll, featuring a porphyrin structure as the photosensitizer and enzyme nitrogenase featuring an iron (Fe) atom as a favorable binding site for N₂via π-backbonding, here we developed a porphyrin-based metal-organic framework (PMOF) with Fe as the active center as an artificial photocatalyst for N₂ reduction reaction (NRR) under ambient conditions. The PMOF features aluminum (Al) as metal node imparting high stability and Fe incorporated and atomically dispersed by residing at each porphyrin ring promoting the adsorption and the activation of N₂, termed Al-PMOF(Fe). Compared with the pristine Al-PMOF, Al-PMOF(Fe) exhibits a substantial enhancement in NH₃ yield (635 μg g^-1_cat.) and production rate (127 μg h^-1 g^-1_cat.) of 82% and 50%, respectively, on par with the best-performing MOF-based NRR catalysts. Three cycles of photocatalytic NRR experimental results corroborate a stable photocatalytic activity of Al-PMOF(Fe). The combined experimental and theoretical results reveal that the Fe-N site in Al-PMOF(Fe) is the active photocatalytic center that can mitigate the difficulty of the rate-determining step in photocatalytic NRR. The possible reaction pathways of NRR on Al-PMOF(Fe) were established. Our study of porphyrin-based MOF for the photocatalytic NRR will provide insight into the rational design of catalysts for artificial photosynthesis.

Functionalized Hydroperoxide Formation from the Reaction of Methacrolein-Oxide, an Isoprene-Derived Criegee Intermediate, with Formic Acid: Experiment and Theory

Methacrolein oxide (MACR-oxide) is a four-carbon, resonance-stabilized Criegee intermediate produced from isoprene ozonolysis, yet its reactivity is not well understood. This study identifies the functionalized hydroperoxide species, 1-hydroperoxy-2-methylallyl formate (HPMAF), generated from the reaction of MACR-oxide with formic acid using multiplexed photoionization mass spectrometry (MPIMS, 298 K = 25 °C, 10 torr = 13.3 hPa). Electronic structure calculations indicate the reaction proceeds via an energetically favorable 1,4-addition mechanism. The formation of HPMAF is observed by the rapid appearance of a fragment ion at m/z 99, consistent with the proposed mechanism and characteristic loss of HO2 upon photoionization of functional hydroperoxides. The identification of HPMAF is confirmed by comparison of the appearance energy of the fragment ion with theoretical predictions of its photoionization threshold. The results are compared to analogous studies on the reaction of formic acid with methyl vinyl ketone oxide (MVK-oxide), the other four-carbon Criegee intermediate in isoprene ozonolysis.

Electrolysis Can Be Used to Resolve Hydrogenation Pathways at Palladium Surfaces in a Membrane Reactor

For common hydrogenation chemistries that occur at high temperatures (where H₂ is adsorbed and activated at the same surface which the substrate must also adsorb for reaction), there is often little consensus on how the reactions (e.g., hydro(deoxy)genation) actually occur. We demonstrate here that an electrocatalytic palladium membrane reactor (ePMR) can be used to study hydrogenation reaction mechanisms at ambient temperatures, where the catalyst does not necessarily undergo structural reorganization. The ePMR uses electrolysis and a hydrogen-selective palladium membrane to deliver reactive hydrogen to a catalyst surface in an adjacent compartment for reaction with an organic substrate. This process forms the requisite metal-hydride surface for hydrogenation chemistry, but at ambient temperature and pressure, and without a H₂ source. We demonstrate the utility of this analytical tool by studying the hydrogenation of benzaldehyde at palladium nanocubes with dimensions of 13-24 nm. This experimental design enabled us to resolve that the alcohol product forms at the facial sites, whereas the hydrodeoxygenation step occurs at edge sites. These observations enabled us to develop the first site-specific definition of how a carbonyl species undergoes hydro(deoxy)genation.

High performance global exploration of isomers and isomerization channels on quantum chemical potential energy surface of H5 C2 NO2

High performance global exploration of isomers and isomerization channels on the quantum chemical potential energy surface (PES) is performed for H₅ C₂ NO₂ by using the scaled hypersphere search-anharmonic downward distortion following (SHS-ADDF) method. A multi-node operation, NeoGRRM, has achieved high performance exploration calculations for the large system by submitting SHS-ADDF sub-jobs into many cores in parallel and unifying the results of sub-jobs into the total lists of the main-job. Global exploration of equilibrium (EQ) and transition-state structures at the level of B3LYP/6-31G(d) gave 3210 EQs and 23278 TSs. Nine compounds were found in the low energy regions of 0-100 kJ/mol; the lowest energy compound is N-methylcarbamic acid, the second is methyl carbamate, and the third is glycine (the most fundamental amino acid). Interconversion pathways between the conformers of each of the low energy compounds were surveyed. Isomerization channels around glycine were explored in detail. The lowest energy barriers around some of the EQs turned to be negative after zero-point energy corrections. This indicates that those structures cannot exist as independent structures because they spontaneously collapse into more stable structures. The global PES search showed various interesting dissociating channels which indicate synthon reaction pathways in the reverse directions.

Optimizing the Carbon Dioxide Reduction Pathway through Surface Modification by Halogenation

Facilitating the charge separation of semiconductor photocatalysts to increase the photocatalytic CO₂ reduction activity has become a great challenge for sustainable energy conversion. Herein, the surface halogen-modified defect-rich Bi₂ WO₆ nanosheets have been successfully prepared to address the aforementioned challenge. Importantly, the modification of surface with halogen atoms is beneficial for the adsorption and activation for CO₂ molecules and charge separation. These properties have been analyzed by experimental and theoretical methods. DFT calculations revealed that the modification of the Bi₂ WO₆ surface with Br atoms can decrease the formation energy of the *COOH intermediate, which accelerates CO₂ conversion. All halogen-modified defect-rich Bi₂ WO₆ nanosheets showed an enhanced photocatalytic CO₂ reduction activity. Specifically, Br-Bi₂ WO₆ exhibited the best CO generation rate of 13.8 μmol g^-1 h^-1 , which is roughly 7.3 times as high as the unmodified defect-rich Bi₂ WO₆ (1.9 μmol g^-1 h^-1 ). Moreover, in the presence of a cocatalyst (cobalt phthalocyanine) and a sacrificial agent (triethanolamine), Br-Bi₂ WO₆ exhibited an even further improved CO generation rate of 187 μmol g^-1  h^-1 . This finding provides a new approach to optimize the CO₂ reduction pathway of semiconductor photocatalysts, which is beneficial to develop highly efficient CO₂ reduction photocatalysts.

Bromination Mechanism of closo-1,2-C2 B10 H12 and the Structure of the Resulting 9-Br-closo-1,2-C2 B10 H11 Determined by Gas Electron Diffraction

9-Br-closo-1,2-C₂ B₁₀ H₁₁ has been prepared and its gas-phase structure has been examined by means of gas electron diffraction. The structure of the carbaborane core is similar to the structure of the parent compound, which is of C_2v symmetry. A DFT-based search for the corresponding reaction pathway of the bromination of closo-1,2-C₂ B₁₀ H₁₂ revealed that the catalytic amount of aluminum reduces the barrier of the initial attack of the bromination agent toward the negatively charged part of the icosahedral carbaborane, i. e., the first transition state, from about 40 to about 27 kcalmol^-1 . The Br-Br bond is weakened by an intermediate binding to the large π-hole on the aluminum atom of AlBr₃ , which is the driving force for the AlBr₃ -catalyzed bromination.

Prospects for Functionalizing Elemental 2D Pnictogens: A Study of Molecular Models

Despite the intense amount of attention and huge potential of 2D-layered pnictogens for applications in chemistry, physics, and materials science, there has yet to be a robust strategy developed to systematically functionalize them to tailor their properties. This is due to a number of factors, including practical instability toward ambient conditions, difficulty in characterizing modified materials, and also more inherent reactivity issues. Here, avenues for functionalization are discussed using examples of molecular models from the wider literature, along with their possible advantages and likely pitfalls. Finally, a critical appraisal of the current field and its future is offered.

A Directed Route to Colloidal Nanoparticle Synthesis of the Copper Selenophosphate Cu3 PSe4

The first colloidal nanoparticle synthesis of the copper selenophosphate Cu₃ PSe₄ , a promising new material for photovoltaics, is reported. Because the formation of binary copper selenide impurities seemed to form more readily, two approaches were developed to install phosphorus bonds directly: 1) the synthesis of molecular P₄ Se₃ and subsequent reaction with a copper precursor, (P-Se)+Cu, and 2) the synthesis of copper phosphide, Cu₃ P, nanoparticles and subsequent reaction with a selenium precursor, (Cu-P)+Se. The isolation and purification of Cu₃ P nanoparticles and subsequent selenization yielded phase-pure Cu₃ PSe₄ . Solvent effects and Se precursor reactivities were elucidated and were key to understanding the final reaction conditions.

Kinetics and mechanistic study on degradation of prednisone acetate by ozone

Prednisone acetate (PNSA) is one of the regular glucocorticoid medicines that have been detected in surface water. In this work, the removal of PNSA by ozone was systematically studied under various conditions, and degradation intermediates and reaction pathways were proposed. The results showed that aqueous ozonation was able to remove PNSA effectively, and low pH favored this reaction. The addition of tertiary butanol did not inhibit the oxidation of PNSA by ozone, suggesting that the degradation was caused mainly by the direct oxidation effect of ozone molecules. Moreover, the presence of carboxylated or hydroxylated multiwalled carbon nanotubes can enhance the removal efficiency of PNSA by ozone. Under neutral and acidic conditions, the degradation of PNSA followed pseudo-first-order reaction. Seven intermediates were detected via liquid chromatography-mass spectrometry, and the degradation pathways were then proposed by considering the relative charge density of the frontier orbitals calculated with the Gaussian program. The electrophilic reaction and the Criegee mechanism were the primary reaction mechanisms in the degradation of PNSA by ozone. Formic acid, acetic acid, and oxalic acid were detected as the final reaction products via ion chromatography. Additionally, the aquatic toxicity of the ozonation products was predicted using ECOSAR method. The biodegradation potentials of the pollutant and the ozonation products were estimated using BIOWIN^TM, suggesting that O₃ treatment could significantly enhance the biodegradable potentials of PNSA and its transformation intermediates in the biological post-treatment process. This work can provide useful information for the treatment of PNSA-containing wastewaters.

Mechanistic and Kinetic Investigations on the Ozonolysis of Biomass Burning Products: Guaiacol, Syringol and Creosol

The lignin pyrolysis products generated by biomass combustion make an essential contribution to the formation of secondary organic aerosols (SOAs). The ozone-initiated oxidation of guaiacol, syringol and creosol, major constituents of biomass burning, were investigated theoretically by using the density functional theory (DFT) method at the MPWB1K/6-311+G(3df,2p)//MPWB1K/6-31+G(d,p) level. Six primary addition reaction pathways and further decomposition routes with corresponding thermodynamic values were proposed. The Criegee intermediates can be excited by small molecules, such as NO_x, H₂O in the atmosphere, and would further proceed via self-decomposition or isomerization. The most predominant product for ozonation of guaiacol is the monomethyl muconate (P1). At 295 K and atmospheric pressure, the rate constant is 1.10 × 10^-19 cm³ molecule^-1 s^-1, which is lies a factor of 4 smaller than the previous experimental study. The branching ratios of the six channels are calculated based on corresponding rate coefficient. The present work mainly provides a more comprehensive and detailed theoretical research on the ozonation of methoxyphenol, which aspires to offer novel insights and reference for future experimental and theoretical work and control techniques of SOAs caused by lignin pyrolysis products.

Facile Preparation of Micrometer KClO₄/Zr Energetic Composite Particles with Enhanced Light Radiation

Developing energetic composite materials consisting of fuel and oxidizer is an effective strategy to enhance the energy release property. However, this strategy has rarely been applied in Potassium Perchlorate (KClO₄)-containing energetic materials, even though KClO₄ is a much stronger oxidizer than most previously reported metal-oxide oxidizer. One of the main obstacles is the lack of simple and in situ ways to introduce KClO₄ into the composite. In present work, micrometer KClO₄/Zirconium (KClO₄/Zr) composite particles were successfully prepared using a facile chemical solution-deposition method. The structure and particle morphologies of as-obtained KClO₄/Zr composite were characterized by X-ray diffraction (XRD) and scanning electronic microscope (SEM)-EDS (Energy Dispersive Spectrometer). The evolutionary combustion behavior was evaluated using flame-based light-radiation spectra and successive photography technique. Results showed that the morphology, light-radiation properties and flame-evolution characteristics of KClO₄/Zr composite varied with the content of KClO₄ and the particle size of Zr. Compared with the mechanical mixture of KClO₄/Zr, the KClO₄/Zr composite showed much higher light-radiation intensity and longer light-emission duration time after reasonably controlling the preparation parameters. Flame photographs revealed that the enhanced light radiation of KClO₄/Zr composite should be ascribed to higher use efficiency of “oxygen” in the oxidizer, which promoted both the solid–solid and solid–gas reaction pathways between KClO₄ and Zr.

Rational Design of Catalytic Centers in Crystalline Frameworks

Crystalline frameworks including primarily metal organic frameworks (MOF) and covalent organic frameworks (COF) have received much attention in the field of heterogeneous catalysts recently. Beyond providing large surface area and spatial confinement, these crystalline frameworks can be designed to either directly act as or influence the catalytic sites at molecular level. This approach offers a unique advantage to gain deeper insights of structure-activity correlations in solid materials, leading to new guiding principles for rational design of advanced solid catalysts for potential important applications related to energy and fine chemical synthesis. In this review, recent key progress achieved in designing MOF- and COF-based molecular solid catalysts and the mechanistic understanding of the catalytic centers and associated reaction pathways are summarized. The state-of-the-art rational design of MOF- and COF-based solid catalysts in this review is grouped into seven different areas: (i) metalated linkers, (ii) metalated moieties anchored on linkers, (iii) organic moieties anchored on linkers, (iv) encapsulated single sites in pores, and (v) metal-mode-based active sites in MOFs. Along with this, some attention is paid to theoretical studies about the reaction mechanisms. Finally, technical challenges and possible solutions in applying these catalysts for practical applications are also presented.

Calculating Iso-Committor Surfaces as Optimal Reaction Coordinates with Milestoning

Reaction coordinates are vital tools for qualitative and quantitative analysis of molecular processes. They provide a simple picture of reaction progress and essential input for calculations of free energies and rates. Iso-committor surfaces are considered the optimal reaction coordinate. We present an algorithm to compute efficiently a sequence of isocommittor surfaces. These surfaces are considered an optimal reaction coordinate. The algorithm analyzes Milestoning results to determine the committor function. It requires only the transition probabilities between the milestones, and not transition times. We discuss the following numerical examples: (i) a transition in the Mueller potential; (ii) a conformational change of a solvated peptide; and (iii) cholesterol aggregation in membranes.

Stereoisomerism of bis(σ-Zincane) Complexes: Evidence for an Intramolecular Pathway

The first bis(σ-zincane) complexes, heterotri- metallic species [M(CO)₄ (η² -HZnBDI)₂ ], have been prepared (BDI=κ² -{2,6-(iPr)₂ C₆ H₃ NCMe}₂ CH). For M=Cr, a single stereoisomer is observed in solution and the solid-state. For M=Mo and W, cis and trans isomers were found to reversibly interconvert at 297 K. Despite the huge steric demands of the ligand on zinc, the cis isomer was found to be the most thermodynamically stable in all cases. The activation parameters for the isomerisation when M=Mo are ΔH^≠ =20.8 kcal mol^-1 and ΔS^≠ =-12.8 cal K^-1  mol^-1 . In combination with DFT calculations, the negative activation entropy suggests an intramolecular rotation mechanism for isomerisation.

Tailoring Transition-Metal Hydroxides and Oxides by Photon-Induced Reactions

Controlled synthesis of transition-metal hydroxides and oxides with earth-abundant elements have attracted significant interest because of their wide applications, for example as battery electrode materials or electrocatalysts for fuel generation. Here, we report the tuning of the structure of transition-metal hydroxides and oxides by controlling chemical reactions using an unfocused laser to irradiate the precursor solution. A Nd:YAG laser with wavelengths of 532 nm or 1064 nm was used. The Ni²⁺ , Mn²⁺ , and Co²⁺ ion-containing aqueous solution undergoes photo-induced reactions and produces hollow metal-oxide nanospheres (Ni_0.18 Mn_0.45 Co_0.37 O_x ) or core-shell metal hydroxide nanoflowers ([Ni_0.15 Mn_0.15 Co_0.7 (OH)₂ ](NO₃ )_0.2 ⋅H₂ O), depending on the laser wavelengths. We propose two reaction pathways, either by photo-induced redox reaction or hydrolysis reaction, which are responsible for the formation of distinct nanostructures. The study of photon-induced materials growth shines light on the rational design of complex nanostructures with advanced functionalities.

Sodiation Kinetics of Metal Oxide Conversion Electrodes: A Comparative Study with Lithiation

The development of sodium ion batteries (NIBs) can provide an alternative to lithium ion batteries (LIBs) for sustainable, low-cost energy storage. However, due to the larger size and higher m/e ratio of the sodium ion compared to lithium, sodiation reactions of candidate electrodes are expected to differ in significant ways from the corresponding lithium ones. In this work, we investigated the sodiation mechanism of a typical transition metal-oxide, NiO, through a set of correlated techniques, including electrochemical and synchrotron studies, real-time electron microscopy observation, and ab initio molecular dynamics (MD) simulations. We found that a crystalline Na2O reaction layer that was formed at the beginning of sodiation plays an important role in blocking the further transport of sodium ions. In addition, sodiation in NiO exhibits a "shrinking-core" mode that results from a layer-by-layer reaction, as identified by ab initio MD simulations. For lithiation, however, the formation of Li antisite defects significantly distorts the local NiO lattice that facilitates Li insertion, thus enhancing the overall reaction rate. These observations delineate the mechanistic difference between sodiation and lithiation in metal-oxide conversion materials. More importantly, our findings identify the importance of understanding the role of reaction layers on the functioning of electrodes and thus provide critical insights into further optimizing NIB materials through surface engineering.

Reaction pathways for the deoxygenation of vegetable oils and related model compounds

Vegetable oil-based feeds are regarded as an alternative source for the production of fuels and chemicals. Paraffins and olefins can be produced from these feeds through catalytic deoxygenation. The fundamentals of this process are mostly studied by using model compounds such as fatty acids, fatty acid esters, and specific triglycerides because of their structural similarity to vegetable oils. In this Review we discuss the impact of feedstock, reaction conditions, and nature of the catalyst on the reaction pathways of the deoxygenation of vegetable oils and its derivatives. As such, we conclude on the suitability of model compounds for this reaction. It is shown that the type of catalyst has a significant effect on the deoxygenation pathway, that is, group 10 metal catalysts are active in decarbonylation/decarboxylation whereas metal sulfide catalysts are more selective to hydrodeoxygenation. Deoxygenation studies performed under H2 showed similar pathways for fatty acids, fatty acid esters, triglycerides, and vegetable oils, as mostly deoxygenation occurs indirectly via the formation of fatty acids. Deoxygenation in the absence of H2 results in significant differences in reaction pathways and selectivities depending on the feedstock. Additionally, using unsaturated feedstocks under inert gas results in a high selectivity to undesired reactions such as cracking and the formation of heavies. Therefore, addition of H2 is proposed to be essential for the catalytic deoxygenation of vegetable oil feeds.