1
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Boulangeot N, Brix F, Sur F, Gaudry É. Hydrogen, Oxygen, and Lead Adsorbates on Al 13Co 4(100): Accurate Potential Energy Surfaces at Low Computational Cost by Machine Learning and DFT-Based Data. J Chem Theory Comput 2024. [PMID: 39158468 DOI: 10.1021/acs.jctc.4c00367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/20/2024]
Abstract
Intermetallic compounds are promising materials in numerous fields, especially those involving surface interactions, such as catalysis. A key factor to investigate their surface properties lies in adsorption energy maps, typically built using first-principles approaches. However, exploring the adsorption energy landscapes of intermetallic compounds can be cumbersome, usually requiring huge computational resources. In this work, we propose an efficient method to predict adsorption energies, based on a Machine Learning (ML) scheme fed by a few Density Functional Theory (DFT) estimates performed on n sites selected through the Farthest Point Sampling (FPS) process. We detail its application on the Al13Co4(100) quasicrystalline approximant surface for several atomic adsorbates (H, O, and Pb). On this specific example, our approach is shown to outperform both simple interpolation strategies and the recent ML force field MACE [arXiv.2206.07697], especially when the number n is small, i.e., below 36 sites. The ground-truth DFT adsorption energies are much more correlated with the predicted FPS-ML estimates (Pearson R-factor of 0.71, 0.73, and 0.90 for H, O and Pb, respectively, when n = 36) than with interpolation-based or MACE-ML ones (Pearson R-factors of 0.43, 0.39, and 0.56 for H, O, and Pb, in the former case and 0.22, 0.35, and 0.63 in the latter case). The unbiased root-mean-square error (ubRMSE) is lower for FPS-ML than for interpolation-based and MACE-ML predictions (0.15, 0.17, and 0.17 eV, respectively, for hydrogen and 0.17, 0.25, and 0.22 eV for lead), except for oxygen (0.55, 0.47, and 0.46 eV) due to large surface relaxations in this case. We believe that these findings and the corresponding methodology can be extended to a wide range of systems, which will motivate the discovery of novel functional materials.
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Affiliation(s)
- Nathan Boulangeot
- Univ. de Lorraine, CNRS UMR7198, Institut Jean Lamour, Campus Artem, 2 allée André Guinier, 54000 Nancy, France
- Univ. de Lorraine, INRIA, CNRS UMR7503, Laboratoire Lorrain de Recherche en Informatique et Ses Applications, Campus Scientifique, 615 Rue du Jardin-Botanique, 54506 Vandœuvre-lès-Nancy, France
| | - Florian Brix
- Univ. de Lorraine, CNRS UMR7198, Institut Jean Lamour, Campus Artem, 2 allée André Guinier, 54000 Nancy, France
- Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
| | - Frédéric Sur
- Univ. de Lorraine, INRIA, CNRS UMR7503, Laboratoire Lorrain de Recherche en Informatique et Ses Applications, Campus Scientifique, 615 Rue du Jardin-Botanique, 54506 Vandœuvre-lès-Nancy, France
| | - Émilie Gaudry
- Univ. de Lorraine, CNRS UMR7198, Institut Jean Lamour, Campus Artem, 2 allée André Guinier, 54000 Nancy, France
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2
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Kirkvold C, Collins BA, Goodpaster JD. CatEmbed: A Machine-Learned Representation Obtained via Categorical Entity Embedding for Predicting Adsorption and Reaction Energies on Bimetallic Alloy Surfaces. J Phys Chem Lett 2024; 15:6791-6797. [PMID: 38913414 DOI: 10.1021/acs.jpclett.4c01492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/25/2024]
Abstract
Machine-learning models for predicting adsorption energies on metallic surfaces often rely on basic elemental properties and electronic and geometric descriptors. Here, we apply categorical entity embedding, a featurization method inspired by natural language processing techniques, to predict adsorption energies on bimetallic alloy surfaces using categorical descriptors. Using this method, we develop a machine-learned representation from categorical descriptors (e.g., surface composition, adsorbate type, and site type) of the slab/adsorbate complex. By combining this representation with numerical features (e.g., slab metal stoichiometric ratios), we create the CatEmbed representation. Remarkably, decision tree models trained using CatEmbed, which includes no explicit geometric information, achieve a Mean Absolute Error (MAE) of 0.12 eV. Additionally, we extend this technique to predict reaction energies on bimetallic surfaces, creating the CatEmbed-React representation, which achieves an MAE of 0.08 eV. These findings highlight the effectiveness of categorical entity embedding for predicting adsorption and reaction energies on bimetallic alloy surfaces.
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Affiliation(s)
- Clara Kirkvold
- Department of Chemistry, University of Minnesota, Smith Hall, 207 Pleasant St SE, Minneapolis, Minnesota 55455-0431, United States
| | - Brianna A Collins
- Department of Chemistry, University of Minnesota, Smith Hall, 207 Pleasant St SE, Minneapolis, Minnesota 55455-0431, United States
| | - Jason D Goodpaster
- Department of Chemistry, University of Minnesota, Smith Hall, 207 Pleasant St SE, Minneapolis, Minnesota 55455-0431, United States
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3
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Abed J, Heras-Domingo J, Sanspeur RY, Luo M, Alnoush W, Meira DM, Wang H, Wang J, Zhou J, Zhou D, Fatih K, Kitchin JR, Higgins D, Ulissi ZW, Sargent EH. Pourbaix Machine Learning Framework Identifies Acidic Water Oxidation Catalysts Exhibiting Suppressed Ruthenium Dissolution. J Am Chem Soc 2024; 146:15740-15750. [PMID: 38830239 DOI: 10.1021/jacs.4c01353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2024]
Abstract
The demand for green hydrogen has raised concerns over the availability of iridium used in oxygen evolution reaction catalysts. We identify catalysts with the aid of a machine learning-aided computational pipeline trained on more than 36,000 mixed metal oxides. The pipeline accurately predicts Pourbaix decomposition energy (Gpbx) from unrelaxed structures with a mean absolute error of 77 meV per atom, enabling us to screen 2070 new metallic oxides with respect to their prospective stability under acidic conditions. The search identifies Ru0.6Cr0.2Ti0.2O2 as a candidate having the promise of increased durability: experimentally, we find that it provides an overpotential of 267 mV at 100 mA cm-2 and that it operates at this current density for over 200 h and exhibits a rate of overpotential increase of 25 μV h-1. Surface density functional theory calculations reveal that Ti increases metal-oxygen covalency, a potential route to increased stability, while Cr lowers the energy barrier of the HOO* formation rate-determining step, increasing activity compared to RuO2 and reducing overpotential by 40 mV at 100 mA cm-2 while maintaining stability. In situ X-ray absorption spectroscopy and ex situ ptychography-scanning transmission X-ray microscopy show the evolution of a metastable structure during the reaction, slowing Ru mass dissolution by 20× and suppressing lattice oxygen participation by >60% compared to RuO2.
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Affiliation(s)
- Jehad Abed
- Department of Materials Science and Engineering, University of Toronto, 184 College Street, Toronto, Ontario M5S 3E4, Canada
- Department of Electrical and Computer Engineering, University of Toronto, 35 St George Street, Toronto, Ontario M5S 1A4, Canada
| | - Javier Heras-Domingo
- Department of Chemical Engineering, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Rohan Yuri Sanspeur
- Department of Chemical Engineering, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Mingchuan Luo
- School of Materials Science and Engineering, Peking University, Beijing 100871, P. R. China
| | - Wajdi Alnoush
- Department of Chemical Engineering, McMaster University, 1280 Main Street West, Hamilton, Ontario L8S 4L7, Canada
| | - Debora Motta Meira
- CLS@APS Sector 20, Advanced Photon Source, Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, Illinois 60439, United States
- Canadian Light Source Inc., 44 Innovation Boulevard, Saskatoon, Saskatchewan S7N 2 V3, Canada
| | - Hsiaotsu Wang
- Canadian Light Source Inc., 44 Innovation Boulevard, Saskatoon, Saskatchewan S7N 2 V3, Canada
| | - Jian Wang
- Canadian Light Source Inc., 44 Innovation Boulevard, Saskatoon, Saskatchewan S7N 2 V3, Canada
| | - Jigang Zhou
- Canadian Light Source Inc., 44 Innovation Boulevard, Saskatoon, Saskatchewan S7N 2 V3, Canada
| | - Daojin Zhou
- Department of Electrical and Computer Engineering, University of Toronto, 35 St George Street, Toronto, Ontario M5S 1A4, Canada
| | - Khalid Fatih
- Clean Energy Innovation, National Research Council Canada, 4250 Wesbrook Mall, Vancouver, British Columbia V6T 1W5, Canada
| | - John R Kitchin
- Department of Chemical Engineering, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Drew Higgins
- Department of Chemical Engineering, McMaster University, 1280 Main Street West, Hamilton, Ontario L8S 4L7, Canada
| | - Zachary W Ulissi
- Department of Chemical Engineering, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Edward H Sargent
- Department of Electrical and Computer Engineering, University of Toronto, 35 St George Street, Toronto, Ontario M5S 1A4, Canada
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4
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Malone W, von der Heyde J, Kara A. Accessing the usefulness of atomic adsorption configurations in predicting the adsorption properties of molecules with machine learning. Phys Chem Chem Phys 2024; 26:11676-11685. [PMID: 38563401 DOI: 10.1039/d3cp06312g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
We present a systematic study into the effect of adding atomic adsorption configurations into the training and validation dataset for a neural network's predictions of the adsorption energies of small molecules on single metal and bimetallic, single crystal surfaces. Specifically, we examine the efficacy of models trained with and without H and X atomic adsorption configurations, where X is C, N, or O, to predict XHn adsorption energies. In addition, we compare our machine learning models to traditional simple scaling relationships. We find that models trained with the atomic adsorption configurations outperform models trained with only molecular adsorption configurations, with as much as a 0.37 eV decrease in the MAE. We find that models trained with the atomic adsorption configurations slightly outperform traditional scaling relationships. In general, these results suggest it may be possible to vastly reduce the number of adsorption configurations one needs for training and validation datasets by supplementing said data with the adsorption configurations of composite atoms or smaller molecular fragments.
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Affiliation(s)
- Walter Malone
- Department of Physics, Tuskegee University, 1200 W. Montgomery Rd., Tuskegee, AL 36088, USA.
| | - Johnathan von der Heyde
- Department of Physics, University of Central Florida, 4000 Central Florida Blvd., Orlando, Florida, 32816, USA
| | - Abdelkader Kara
- Department of Physics, University of Central Florida, 4000 Central Florida Blvd., Orlando, Florida, 32816, USA
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5
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Roy D, Charan Mandal S, Das A, Pathak B. Unravelling CO 2 Reduction Reaction Intermediates on High Entropy Alloy Catalysts: An Interpretable Machine Learning Approach to Establish Scaling Relations. Chemistry 2024; 30:e202302679. [PMID: 37966848 DOI: 10.1002/chem.202302679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 10/30/2023] [Accepted: 11/15/2023] [Indexed: 11/16/2023]
Abstract
Establishment of a scaling relation among the reaction intermediates is highly important but very much challenging on complex surfaces, such as surfaces of high entropy alloys (HEAs). Herein, we designed an interpretable machine learning (ML) approach to establish a scaling relation among CO2 reduction reaction (CO2 RR) intermediates adsorbed at the same adsorption site. Local Interpretable Model-Agnostic Explanations (LIME), Accumulated Local Effects (ALE), and Permutation Feature Importance (PFI) are used for the global and local interpretation of the utilized black box models. These methods were successfully applied through an iterative way and validated on CuCoNiZnMg and CuCoNiZnSnbased HEAs data. Finally, we successfully predicted adsorption energies of *H2 CO (MAE: 0.24 eV) and *H3 CO (MAE: 0.23 eV) by using the *HCO training data. Similarly, adsorption energy of *O (MAE: 0.32 eV) is also predicted from *H training data. We believe that our proposed method can shift the paradigm of state-of-the-art ML in catalysis towards better interpretability.
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Affiliation(s)
- Diptendu Roy
- Department of Chemistry, Indian Institute of Technology Indore, Indore, 453552, India
| | - Shyama Charan Mandal
- Department of Chemistry, Indian Institute of Technology Indore, Indore, 453552, India
- Present address: SUNCAT Center for Interface Science and Catalysis, Department of Chemical Engineering, Stanford University, 443 Via Ortega, Stanford, CA 94305, USA
- SUNCAT Center for Interface Science and Catalysis, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Amitabha Das
- Department of Chemistry, Indian Institute of Technology Indore, Indore, 453552, India
| | - Biswarup Pathak
- Department of Chemistry, Indian Institute of Technology Indore, Indore, 453552, India
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6
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Millan R, Bello-Jurado E, Moliner M, Boronat M, Gomez-Bombarelli R. Effect of Framework Composition and NH 3 on the Diffusion of Cu + in Cu-CHA Catalysts Predicted by Machine-Learning Accelerated Molecular Dynamics. ACS CENTRAL SCIENCE 2023; 9:2044-2056. [PMID: 38033797 PMCID: PMC10683499 DOI: 10.1021/acscentsci.3c00870] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Indexed: 12/02/2023]
Abstract
Cu-exchanged zeolites rely on mobile solvated Cu+ cations for their catalytic activity, but the role of the framework composition in transport is not fully understood. Ab initio molecular dynamics simulations can provide quantitative atomistic insight but are too computationally expensive to explore large length and time scales or diverse compositions. We report a machine-learning interatomic potential that accurately reproduces ab initio results and effectively generalizes to allow multinanosecond simulations of large supercells and diverse chemical compositions. Biased and unbiased simulations of [Cu(NH3)2]+ mobility show that aluminum pairing in eight-membered rings accelerates local hopping and demonstrate that increased NH3 concentration enhances long-range diffusion. The probability of finding two [Cu(NH3)2]+ complexes in the same cage, which is key for SCR-NOx reaction, increases with Cu content and Al content but does not correlate with the long-range mobility of Cu+. Supporting experimental evidence was obtained from reactivity tests of Cu-CHA catalysts with a controlled chemical composition.
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Affiliation(s)
- Reisel Millan
- Department
of Materials Science and Engineering, Massachusetts
Institute of Technology, Cambridge, Massachusetts 02139, United States
- Instituto
de Tecnología Química, Universitat
Politècnica de València-Consejo Superior de Investigaciones
Científicas, Avenida de los Naranjos s/n, 46022 Valencia, Spain
| | - Estefanía Bello-Jurado
- Instituto
de Tecnología Química, Universitat
Politècnica de València-Consejo Superior de Investigaciones
Científicas, Avenida de los Naranjos s/n, 46022 Valencia, Spain
| | - Manuel Moliner
- Instituto
de Tecnología Química, Universitat
Politècnica de València-Consejo Superior de Investigaciones
Científicas, Avenida de los Naranjos s/n, 46022 Valencia, Spain
| | - Mercedes Boronat
- Instituto
de Tecnología Química, Universitat
Politècnica de València-Consejo Superior de Investigaciones
Científicas, Avenida de los Naranjos s/n, 46022 Valencia, Spain
| | - Rafael Gomez-Bombarelli
- Department
of Materials Science and Engineering, Massachusetts
Institute of Technology, Cambridge, Massachusetts 02139, United States
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7
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Mok DH, Li H, Zhang G, Lee C, Jiang K, Back S. Data-driven discovery of electrocatalysts for CO 2 reduction using active motifs-based machine learning. Nat Commun 2023; 14:7303. [PMID: 37952012 PMCID: PMC10640609 DOI: 10.1038/s41467-023-43118-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Accepted: 11/01/2023] [Indexed: 11/14/2023] Open
Abstract
The electrochemical carbon dioxide reduction reaction (CO2RR) is an attractive approach for mitigating CO2 emissions and generating value-added products. Consequently, discovery of promising CO2RR catalysts has become a crucial task, and machine learning (ML) has been utilized to accelerate catalyst discovery. However, current ML approaches are limited to exploring narrow chemical spaces and provide only fragmentary catalytic activity, even though CO2RR produces various chemicals. Here, by merging pre-developed ML model and a CO2RR selectivity map, we establish high-throughput virtual screening strategy to suggest active and selective catalysts for CO2RR without being limited to a database. Further, this strategy can provide guidance on stoichiometry and morphology of the catalyst to researchers. We predict the activity and selectivity of 465 metallic catalysts toward four expected reaction products. During this process, we discover previously unreported and promising behavior of Cu-Ga and Cu-Pd alloys. These findings are then validated through experimental methods.
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Affiliation(s)
- Dong Hyeon Mok
- Department of Chemical and Biomolecular Engineering, Institute of Emergent Materials, Sogang University, Seoul, 04107, Republic of Korea
| | - Hong Li
- Interdisciplinary Research Center, School of Mechanical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Guiru Zhang
- Interdisciplinary Research Center, School of Mechanical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Chaehyeon Lee
- Department of Chemical and Biomolecular Engineering, Institute of Emergent Materials, Sogang University, Seoul, 04107, Republic of Korea
| | - Kun Jiang
- Interdisciplinary Research Center, School of Mechanical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China.
| | - Seoin Back
- Department of Chemical and Biomolecular Engineering, Institute of Emergent Materials, Sogang University, Seoul, 04107, Republic of Korea.
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8
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Noh J, Chang H. Data-Driven Prediction of Configurational Stability of Molecule-Adsorbed Heterogeneous Catalysts. J Chem Inf Model 2023; 63:5981-5995. [PMID: 37715300 DOI: 10.1021/acs.jcim.3c00591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/17/2023]
Abstract
The design of new heterogeneous catalysts that convert small molecules into valuable chemicals is a key challenge for constructing sustainable energy systems. Density functional theory (DFT)-based design frameworks based on the understanding of molecular adsorption on the catalytic surface have been widely proposed to accelerate experimental approaches to develop novel catalysts. In addition, a machine learning (ML)-combined design framework was recently proposed to further reduce the inherent time cost of DFT-based frameworks. However, because of the lack of prior information on chemical interactions between arbitrary surfaces and adsorbates, the efficacy of the computational screening approaches would be reduced by obtaining unexpected structural anomalies (i.e., abnormally converged surface-adsorbate geometries after the DFT calculations) during an exhaustive exploration of chemical space. To overcome this challenge, we propose an ML framework that directly predicts the configurational stability of a given initial surface-adsorbate geometry. Our benchmark experiments with the Open Catalysts 20 (OC20) dataset show promising performance on classifying stable geometry (i.e., F1-score of 0.922, the area under the receiver operating characteristics (AUROC) of 0.906, and Matthews correlation coefficient (MCC) of 0.633) with a high precision of 0.921 by utilizing an ensemble approach. We further interpret the generalizability and domain applicability of the trained model in terms of the chemical space of the OC20 dataset. Furthermore, from an experiment on the training set size dependence of model performance, we found that our ML model could be practically applicable to classify stable configurations even with a relatively small number of training data.
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Affiliation(s)
- Juhwan Noh
- Korea Research Institute of Chemical Technology (KRICT), Daejeon 34114, Republic of Korea
| | - Hyunju Chang
- Korea Research Institute of Chemical Technology (KRICT), Daejeon 34114, Republic of Korea
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9
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Rajan A, Pushkar AP, Dharmalingam BC, Varghese JJ. Iterative multiscale and multi-physics computations for operando catalyst nanostructure elucidation and kinetic modeling. iScience 2023; 26:107029. [PMID: 37360694 PMCID: PMC10285649 DOI: 10.1016/j.isci.2023.107029] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/28/2023] Open
Abstract
Modern heterogeneous catalysis has benefitted immensely from computational predictions of catalyst structure and its evolution under reaction conditions, first-principles mechanistic investigations, and detailed kinetic modeling, which are rungs on a multiscale workflow. Establishing connections across these rungs and integration with experiments have been challenging. Here, operando catalyst structure prediction techniques using density functional theory simulations and ab initio thermodynamics calculations, molecular dynamics, and machine learning techniques are presented. Surface structure characterization by computational spectroscopic and machine learning techniques is then discussed. Hierarchical approaches in kinetic parameter estimation involving semi-empirical, data-driven, and first-principles calculations and detailed kinetic modeling via mean-field microkinetic modeling and kinetic Monte Carlo simulations are discussed along with methods and the need for uncertainty quantification. With these as the background, this article proposes a bottom-up hierarchical and closed loop modeling framework incorporating consistency checks and iterative refinements at each level and across levels.
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Affiliation(s)
- Ajin Rajan
- Department of Chemical Engineering, Indian Institute of Technology Madras, Chennai, Tamil Nadu 600036, India
| | - Anoop P. Pushkar
- Department of Chemical Engineering, Indian Institute of Technology Madras, Chennai, Tamil Nadu 600036, India
| | - Balaji C. Dharmalingam
- Department of Chemical Engineering, Indian Institute of Technology Madras, Chennai, Tamil Nadu 600036, India
| | - Jithin John Varghese
- Department of Chemical Engineering, Indian Institute of Technology Madras, Chennai, Tamil Nadu 600036, India
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10
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Pablo-García S, Morandi S, Vargas-Hernández RA, Jorner K, Ivković Ž, López N, Aspuru-Guzik A. Fast evaluation of the adsorption energy of organic molecules on metals via graph neural networks. NATURE COMPUTATIONAL SCIENCE 2023; 3:433-442. [PMID: 38177837 PMCID: PMC10766545 DOI: 10.1038/s43588-023-00437-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2022] [Accepted: 03/23/2023] [Indexed: 01/06/2024]
Abstract
Modeling in heterogeneous catalysis requires the extensive evaluation of the energy of molecules adsorbed on surfaces. This is done via density functional theory but for large organic molecules it requires enormous computational time, compromising the viability of the approach. Here we present GAME-Net, a graph neural network to quickly evaluate the adsorption energy. GAME-Net is trained on a well-balanced chemically diverse dataset with C1-4 molecules with functional groups including N, O, S and C6-10 aromatic rings. The model yields a mean absolute error of 0.18 eV on the test set and is 6 orders of magnitude faster than density functional theory. Applied to biomass and plastics (up to 30 heteroatoms), adsorption energies are predicted with a mean absolute error of 0.016 eV per atom. The framework represents a tool for the fast screening of catalytic materials, particularly for systems that cannot be simulated by traditional methods.
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Affiliation(s)
- Sergio Pablo-García
- Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology, Tarragona, Spain
- Department of Chemistry, University of Toronto, Lash Miller Chemical Laboratories, Toronto, Ontario, Canada
- Department of Computer Science, University of Toronto, Sandford Fleming Building, Toronto, Ontario, Canada
| | - Santiago Morandi
- Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology, Tarragona, Spain
- Department of Physical and Inorganic Chemistry, Universitat Rovira i Virgili, Tarragona, Spain
| | - Rodrigo A Vargas-Hernández
- Department of Chemistry, University of Toronto, Lash Miller Chemical Laboratories, Toronto, Ontario, Canada
- Vector Institute for Artificial Intelligence, Toronto, Ontario, Canada
| | - Kjell Jorner
- Department of Chemistry, University of Toronto, Lash Miller Chemical Laboratories, Toronto, Ontario, Canada
- Department of Computer Science, University of Toronto, Sandford Fleming Building, Toronto, Ontario, Canada
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, Gothenburg, Sweden
| | - Žarko Ivković
- Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology, Tarragona, Spain
| | - Núria López
- Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology, Tarragona, Spain.
| | - Alán Aspuru-Guzik
- Department of Chemistry, University of Toronto, Lash Miller Chemical Laboratories, Toronto, Ontario, Canada.
- Department of Computer Science, University of Toronto, Sandford Fleming Building, Toronto, Ontario, Canada.
- Vector Institute for Artificial Intelligence, Toronto, Ontario, Canada.
- Department of Materials Science and Engineering, University of Toronto, Toronto, Ontario, Canada.
- Lebovic Fellow, Canadian Institute for Advanced Research (CIFAR), Toronto, Ontario, Canada.
- Acceleration Consortium, University of Toronto, Toronto, Ontario, Canada.
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11
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Steinmann SN, Wang Q, Seh ZW. How machine learning can accelerate electrocatalysis discovery and optimization. MATERIALS HORIZONS 2023; 10:393-406. [PMID: 36541226 DOI: 10.1039/d2mh01279k] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Advances in machine learning (ML) provide the means to bypass bottlenecks in the discovery of new electrocatalysts using traditional approaches. In this review, we highlight the currently achieved work in ML-accelerated discovery and optimization of electrocatalysts via a tight collaboration between computational models and experiments. First, the applicability of available methods for constructing machine-learned potentials (MLPs), which provide accurate energies and forces for atomistic simulations, are discussed. Meanwhile, the current challenges for MLPs in the context of electrocatalysis are highlighted. Then, we review the recent progress in predicting catalytic activities using surrogate models, including microkinetic simulations and more global proxies thereof. Several typical applications of using ML to rationalize thermodynamic proxies and predict the adsorption and activation energies are also discussed. Next, recent developments of ML-assisted experiments for catalyst characterization, synthesis optimization and reaction condition optimization are illustrated. In particular, the applications in ML-enhanced spectra analysis and the use of ML to interpret experimental kinetic data are highlighted. Additionally, we also show how robotics are applied to high-throughput synthesis, characterization and testing of electrocatalysts to accelerate the materials exploration process and how this equipment can be assembled into self-driven laboratories.
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Affiliation(s)
| | - Qing Wang
- Univ Lyon, ENS de Lyon, CNRS, Laboratoire de Chimie UMR 5182, Lyon, France.
| | - Zhi Wei Seh
- Institute of Materials Research and Engineering, Agency for Science, Technology and Research (A*STAR), 2 Fusionopolis Way, Innovis, 138634, Singapore.
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12
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Xu G, Cai C, Zhao W, Liu Y, Wang T. Rational design of catalysts with earth‐abundant elements. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Gaomou Xu
- Center of Artificial Photosynthesis for Solar Fuels and Department of Chemistry, School of Science Westlake University Hangzhou Zhejiang Province China
- Institute of Natural Sciences, Westlake Institute for Advanced Study Hangzhou Zhejiang Province China
| | - Cheng Cai
- Center of Artificial Photosynthesis for Solar Fuels and Department of Chemistry, School of Science Westlake University Hangzhou Zhejiang Province China
- Institute of Natural Sciences, Westlake Institute for Advanced Study Hangzhou Zhejiang Province China
| | - Wanghui Zhao
- Center of Artificial Photosynthesis for Solar Fuels and Department of Chemistry, School of Science Westlake University Hangzhou Zhejiang Province China
- Institute of Natural Sciences, Westlake Institute for Advanced Study Hangzhou Zhejiang Province China
| | - Yonghua Liu
- Center of Artificial Photosynthesis for Solar Fuels and Department of Chemistry, School of Science Westlake University Hangzhou Zhejiang Province China
- Institute of Natural Sciences, Westlake Institute for Advanced Study Hangzhou Zhejiang Province China
| | - Tao Wang
- Center of Artificial Photosynthesis for Solar Fuels and Department of Chemistry, School of Science Westlake University Hangzhou Zhejiang Province China
- Institute of Natural Sciences, Westlake Institute for Advanced Study Hangzhou Zhejiang Province China
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13
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Reiser P, Neubert M, Eberhard A, Torresi L, Zhou C, Shao C, Metni H, van Hoesel C, Schopmans H, Sommer T, Friederich P. Graph neural networks for materials science and chemistry. COMMUNICATIONS MATERIALS 2022; 3:93. [PMID: 36468086 PMCID: PMC9702700 DOI: 10.1038/s43246-022-00315-6] [Citation(s) in RCA: 68] [Impact Index Per Article: 34.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Accepted: 11/07/2022] [Indexed: 05/14/2023]
Abstract
Machine learning plays an increasingly important role in many areas of chemistry and materials science, being used to predict materials properties, accelerate simulations, design new structures, and predict synthesis routes of new materials. Graph neural networks (GNNs) are one of the fastest growing classes of machine learning models. They are of particular relevance for chemistry and materials science, as they directly work on a graph or structural representation of molecules and materials and therefore have full access to all relevant information required to characterize materials. In this Review, we provide an overview of the basic principles of GNNs, widely used datasets, and state-of-the-art architectures, followed by a discussion of a wide range of recent applications of GNNs in chemistry and materials science, and concluding with a road-map for the further development and application of GNNs.
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Affiliation(s)
- Patrick Reiser
- Institute of Theoretical Informatics, Karlsruhe Institute of Technology, Am Fasanengarten 5, 76131 Karlsruhe, Germany
- Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Marlen Neubert
- Institute of Theoretical Informatics, Karlsruhe Institute of Technology, Am Fasanengarten 5, 76131 Karlsruhe, Germany
| | - André Eberhard
- Institute of Theoretical Informatics, Karlsruhe Institute of Technology, Am Fasanengarten 5, 76131 Karlsruhe, Germany
| | - Luca Torresi
- Institute of Theoretical Informatics, Karlsruhe Institute of Technology, Am Fasanengarten 5, 76131 Karlsruhe, Germany
| | - Chen Zhou
- Institute of Theoretical Informatics, Karlsruhe Institute of Technology, Am Fasanengarten 5, 76131 Karlsruhe, Germany
| | - Chen Shao
- Institute of Theoretical Informatics, Karlsruhe Institute of Technology, Am Fasanengarten 5, 76131 Karlsruhe, Germany
- Present Address: Institute for Applied Informatics and Formal Description Systems, Karlsruhe Institute of Technology, Kaiserstr. 89, 76133 Karlsruhe, Germany
| | - Houssam Metni
- Institute of Theoretical Informatics, Karlsruhe Institute of Technology, Am Fasanengarten 5, 76131 Karlsruhe, Germany
- ECPM, Université de Strasbourg, 25 Rue Becquerel, 67087 Strasbourg, France
| | - Clint van Hoesel
- Institute of Theoretical Informatics, Karlsruhe Institute of Technology, Am Fasanengarten 5, 76131 Karlsruhe, Germany
- Department of Applied Physics, Eindhoven University of Technology, Groene Loper 19, 5612 AP Eindhoven, The Netherlands
| | - Henrik Schopmans
- Institute of Theoretical Informatics, Karlsruhe Institute of Technology, Am Fasanengarten 5, 76131 Karlsruhe, Germany
- Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Timo Sommer
- Institute of Theoretical Informatics, Karlsruhe Institute of Technology, Am Fasanengarten 5, 76131 Karlsruhe, Germany
- Institute for Theory of Condensed Matter, Karlsruhe Institute of Technology, Wolfgang-Gaede-Str. 1, 76131 Karlsruhe, Germany
- Present Address: School of Chemistry, Trinity College Dublin, College Green, Dublin 2, Ireland
| | - Pascal Friederich
- Institute of Theoretical Informatics, Karlsruhe Institute of Technology, Am Fasanengarten 5, 76131 Karlsruhe, Germany
- Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
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14
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Lu X, Xie Z, Wu X, Li M, Cai W. Hydrogen storage metal-organic framework classification models based on crystal graph convolutional neural networks. Chem Eng Sci 2022. [DOI: 10.1016/j.ces.2022.117813] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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15
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Tran R, Wang D, Kingsbury R, Palizhati A, Persson KA, Jain A, Ulissi ZW. Screening of bimetallic electrocatalysts for water purification with machine learning. J Chem Phys 2022; 157:074102. [DOI: 10.1063/5.0092948] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Electrocatalysis provides a potential solution to [Formula: see text] pollution in wastewater by converting it to innocuous N2 gas. However, materials with excellent catalytic activity are typically limited to expensive precious metals, hindering their commercial viability. In response to this challenge, we have conducted the most extensive computational search to date for electrocatalysts that can facilitate [Formula: see text] reduction reaction, starting with 59 390 candidate bimetallic alloys from the Materials Project and Automatic-Flow databases. Using a joint machine learning- and computation-based screening strategy, we evaluated our candidates based on corrosion resistance, catalytic activity, N2 selectivity, cost, and the ability to synthesize. We found that only 20 materials will satisfy all criteria in our screening strategy, all of which contain varying amounts of Cu. Our proposed list of candidates is consistent with previous materials investigated in the literature, with the exception of Cu–Co and Cu–Ag based compounds that merit further investigation.
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Affiliation(s)
- Richard Tran
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA
| | - Duo Wang
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Ryan Kingsbury
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Aini Palizhati
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA
| | - Kristin Aslaug Persson
- Department of Materials Science and Engineering, University of California Berkeley, Berkeley, California 94720, USA
- Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Anubhav Jain
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Zachary W. Ulissi
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA
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16
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Xu W, Reuter K, Andersen M. Predicting binding motifs of complex adsorbates using machine learning with a physics-inspired graph representation. NATURE COMPUTATIONAL SCIENCE 2022; 2:443-450. [PMID: 38177870 DOI: 10.1038/s43588-022-00280-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 06/17/2022] [Indexed: 01/06/2024]
Abstract
Computational screening in heterogeneous catalysis relies increasingly on machine learning models for predicting key input parameters due to the high cost of computing these directly using first-principles methods. This becomes especially relevant when considering complex materials spaces such as alloys, or complex reaction mechanisms with adsorbates that may exhibit bi- or higher-dentate adsorption motifs. Here we present a data-efficient approach to the prediction of binding motifs and associated adsorption enthalpies of complex adsorbates at transition metals and their alloys based on a customized Wasserstein Weisfeiler-Lehman graph kernel and Gaussian process regression. The model shows good predictive performance, not only for the elemental transition metals on which it was trained, but also for an alloy based on these transition metals. Furthermore, incorporation of minimal new training data allows for predicting an out-of-domain transition metal. We believe the model may be useful in active learning approaches, for which we present an ensemble uncertainty estimation approach.
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Affiliation(s)
- Wenbin Xu
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Garching, Germany
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Berlin, Germany
| | - Karsten Reuter
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Berlin, Germany
| | - Mie Andersen
- Aarhus Institute of Advanced Studies, Aarhus University, Aarhus, Denmark.
- Department of Physics and Astronomy-Center for Interstellar Catalysis, Aarhus University, Aarhus, Denmark.
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17
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Ding WL, Zhang T, Wang Y, Xin J, Yuan X, Ji L, He H. Machine Learning Screening of Efficient Ionic Liquids for Targeted Cleavage of the β–O–4 Bond of Lignin. J Phys Chem B 2022; 126:3693-3704. [DOI: 10.1021/acs.jpcb.1c10684] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Wei-Lu Ding
- Beijing Key Laboratory of Ionic Liquids Clean Process, CAS Key Laboratory of Green Process and Engineering, State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Innovation Academy for Green Manufacture Chinese Academy of Sciences, Beijing 100190, China
| | - Tao Zhang
- Beijing Key Laboratory of Ionic Liquids Clean Process, CAS Key Laboratory of Green Process and Engineering, State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China
- Department of Chemistry, Capital Normal University, Beijing 100048, China
| | - Yanlei Wang
- Beijing Key Laboratory of Ionic Liquids Clean Process, CAS Key Laboratory of Green Process and Engineering, State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Innovation Academy for Green Manufacture Chinese Academy of Sciences, Beijing 100190, China
| | - Jiayu Xin
- Beijing Key Laboratory of Ionic Liquids Clean Process, CAS Key Laboratory of Green Process and Engineering, State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Innovation Academy for Green Manufacture Chinese Academy of Sciences, Beijing 100190, China
| | - Xiaoqing Yuan
- Beijing Key Laboratory of Ionic Liquids Clean Process, CAS Key Laboratory of Green Process and Engineering, State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lin Ji
- Department of Chemistry, Capital Normal University, Beijing 100048, China
| | - Hongyan He
- Beijing Key Laboratory of Ionic Liquids Clean Process, CAS Key Laboratory of Green Process and Engineering, State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Innovation Academy for Green Manufacture Chinese Academy of Sciences, Beijing 100190, China
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18
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Liu X, Cai C, Zhao W, Peng HJ, Wang T. Machine Learning-Assisted Screening of Stepped Alloy Surfaces for C 1 Catalysis. ACS Catal 2022. [DOI: 10.1021/acscatal.2c00648] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xinyan Liu
- Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu 611731, Sichuan, China
- Beijing Key Laboratory of Green Chemical Reaction Engineering and Technology, Department of Chemical Engineering, Tsinghua University, Beijing 100084, China
| | - Cheng Cai
- Center of Artificial Photosynthesis for Solar Fuels, School of Science, Westlake University, Hangzhou 310024, Zhejiang, China
| | - Wanghui Zhao
- Center of Artificial Photosynthesis for Solar Fuels, School of Science, Westlake University, Hangzhou 310024, Zhejiang, China
| | - Hong-Jie Peng
- Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu 611731, Sichuan, China
| | - Tao Wang
- Center of Artificial Photosynthesis for Solar Fuels, School of Science, Westlake University, Hangzhou 310024, Zhejiang, China
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19
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Affiliation(s)
- Taewon Jin
- Department of Chemical and Biomolecular Engineering (BK21 Four) Korea Advanced Institute of Science and Technology (KAIST) Daejeon Republic of Korea
| | - Yousung Jung
- Department of Chemical and Biomolecular Engineering (BK21 Four) Korea Advanced Institute of Science and Technology (KAIST) Daejeon Republic of Korea
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20
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Park JW, Choi W, Noh J, Park W, Gu GH, Park J, Jung Y, Song H. Bimetallic Gold-Silver Nanostructures Drive Low Overpotentials for Electrochemical Carbon Dioxide Reduction. ACS APPLIED MATERIALS & INTERFACES 2022; 14:6604-6614. [PMID: 35077146 DOI: 10.1021/acsami.1c20852] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Alloy formation is an advanced approach to improve desired properties that the monoelements cannot achieve. Alloys are usually designed to tailor intrinsic natures or induce synergistic effects by combining materials with distinct properties. Indeed, unprecedented properties have emerged in many cases, superior to a simple sum of pure elements. Here, we present Au-Ag alloy nanostructures with prominent catalytic properties in an electrochemical carbon dioxide reduction reaction (eCO2RR). The Au-Ag hollow nanocubes are prepared by galvanic replacement of Au on Ag nanocubes. When the Au-to-Ag ratio is 1:1 (Au1Ag1), the alloy hollow nanocubes exhibit maximum Faradaic efficiencies of CO production in a wide potential range and high mass activity and CO current density superior to those of the bare metals. In particular, overpotentials are estimated to be similar to or lower than that of the Au catalyst under various standard metrics. Density functional theory calculations, machine learning, and a statistical consideration demonstrate that the optimal configuration of the *COOH intermediate is a bidentate coordination structure where C binds to Au and O binds to Ag. This active Au-Ag neighboring configuration has a maximum population and enhanced intrinsic catalytic activity on the Au1Ag1 surface among other Au-to-Ag compositions, in good agreement with the experimental results. Further application of Au1Ag1 to a membrane electrode assembly cell at neutral conditions shows enhanced CO Faradaic efficiency and current densities compared to Au or Ag nanocubes, indicating the possible extension of Au-Ag alloys to larger electrochemical systems. These results give a new insight into the synergistic roles of Au and Ag in the eCO2RR and offer a fresh direction toward a rational design of bimetallic catalysts at a practical scale.
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Affiliation(s)
- Joon Woo Park
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
| | - Woong Choi
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Clean Energy Research Center, Korea Institute of Science and Technology (KIST), Seoul 02792, Republic of Korea
| | - Juhwan Noh
- Department of Chemical and Biomolecular Engineering (BK21 Four), Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
| | - Woonghyeon Park
- Department of Chemical and Biomolecular Engineering (BK21 Four), Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
| | - Geun Ho Gu
- Department of Chemical and Biomolecular Engineering (BK21 Four), Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
| | - Jonghyeok Park
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
| | - Yousung Jung
- Department of Chemical and Biomolecular Engineering (BK21 Four), Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
| | - Hyunjoon Song
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
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21
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Pablo-García S, Sabadell-Rendón A, Saadun AJ, Morandi S, Pérez-Ramírez J, López N. Generalizing Performance Equations in Heterogeneous Catalysis from Hybrid Data and Statistical Learning. ACS Catal 2022. [DOI: 10.1021/acscatal.1c04345] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Sergio Pablo-García
- Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology ICIQ, Av. Països Catalans 16, 43007, Tarragona, Spain
| | - Albert Sabadell-Rendón
- Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology ICIQ, Av. Països Catalans 16, 43007, Tarragona, Spain
| | - Ali J. Saadun
- Institute for Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 1, 8093 Zürich, Switzerland
| | - Santiago Morandi
- Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology ICIQ, Av. Països Catalans 16, 43007, Tarragona, Spain
| | - Javier Pérez-Ramírez
- Institute for Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 1, 8093 Zürich, Switzerland
| | - Núria López
- Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology ICIQ, Av. Països Catalans 16, 43007, Tarragona, Spain
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22
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Mok DH, Back S. Atomic Structure-Free Representation of Active Motifs for Expedited Catalyst Discovery. J Chem Inf Model 2021; 61:4514-4520. [PMID: 34423642 DOI: 10.1021/acs.jcim.1c00726] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
To discover new catalysts using density functional theory (DFT) calculations, binding energies of reaction intermediates are considered as descriptors to predict catalytic activities. Recently, machine learning methods have been developed to reduce the number of computationally intensive DFT calculations for a high-throughput screening. These methods require several steps such as bulk structure optimization, surface structure modeling, and active site identification, which could be time-consuming as the number of new candidate materials increases. To bypass these processes, in this work, we report an atomic structure-free representation of active motifs to predict binding energies. We identify binding site atoms and their nearest neighboring atoms positioned in the same layer and the sublayer, and their atomic properties are collected to construct fingerprints. Our method enabled a quicker training (200-400 s using CPU) compared to the previous deep-learning models and predicted CO and H binding energies with mean absolute errors (MAEs) of 0.120 and 0.105 eV, respectively. Our method is also capable of creating all possible active motifs without any DFT calculations and predicting their binding energies using the trained model. The predicted binding energy distributions can suggest promising candidates to accelerate catalyst discovery.
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Affiliation(s)
- Dong Hyeon Mok
- Department of Chemical and Biomolecular Engineering, Institute of Emergent Materials, Sogang University, Seoul 04107, Republic of Korea
| | - Seoin Back
- Department of Chemical and Biomolecular Engineering, Institute of Emergent Materials, Sogang University, Seoul 04107, Republic of Korea
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23
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Kim J, Tiong LCO, Kim D, Han SS. Deep Learning-Based Prediction of Material Properties Using Chemical Compositions and Diffraction Patterns as Experimentally Accessible Inputs. J Phys Chem Lett 2021; 12:8376-8383. [PMID: 34435783 DOI: 10.1021/acs.jpclett.1c02305] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
We report a deep learning (DL) model that predicts various material properties while accepting directly accessible inputs from routine experimental platforms: chemical compositions and diffraction data, which can be obtained from the X-ray or electron-beam diffraction and energy-dispersive spectroscopy, respectively. These heterogeneous forms of inputs are treated simultaneously in our DL model, where the novel chemical composition vector is proposed by developing element embedding with the normalized composition matrix. With 1524 binary samples available in the Materials Project database, the model predicts formation energies and band gaps with mean absolute errors of 0.29 eV/atom and 0.66 eV, respectively. According to the weighing test between these two inputs, the properties tend to be more influenced by the chemical composition than the crystal structure. This work intentionally avoids using inputs that are not directly accessible (e.g., atomic coordinates) in experimental platforms, and thus is expected to substantially improve the practical use of DL models.
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Affiliation(s)
- Jeongrae Kim
- Computational Science Research Center, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
| | - Leslie Ching Ow Tiong
- Computational Science Research Center, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
| | - Donghun Kim
- Computational Science Research Center, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
| | - Sang Soo Han
- Computational Science Research Center, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
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24
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Li X, Chiong R, Hu Z, Page AJ. Low-Cost Pt Alloys for Heterogeneous Catalysis Predicted by Density Functional Theory and Active Learning. J Phys Chem Lett 2021; 12:7305-7311. [PMID: 34319099 DOI: 10.1021/acs.jpclett.1c01851] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Pt is a key high-performing catalyst for important chemical conversions, such as biomass conversion and water splitting. Limited Pt reserves, however, demand that we identify more sustainable alternative catalyst materials for these processes. Here, we combine state-of-the-art graph neural networks and crystal graph machine learning representations with active learning to discover new, low-cost Pt alloy catalysts for biomass reforming and hydrogen evolution reactions. We identify 12 Pt-based alloys which have comparable catalytic activity to that of the exemplar Pt(111) surface. Notably, Cu3Pt and FeCuPt2 exhibit near identical catalytic performance as that of Pt(111). These results demonstrate the potential of machine learning for predicting new catalytic materials without recourse to expensive DFT geometry optimizations, the current bottleneck impeding high-throughput materials discovery. We also examine the performance of d-band theory in elucidating trends in binary and ternary Pt alloys.
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Affiliation(s)
- Xinyu Li
- School of Electrical Engineering and Computing, The University of Newcastle, Callaghan, New South Wales 2308, Australia
| | - Raymond Chiong
- School of Electrical Engineering and Computing, The University of Newcastle, Callaghan, New South Wales 2308, Australia
| | - Zhongyi Hu
- School of Information Management, Wuhan University, Wuhan 430072, China
| | - Alister J Page
- Discipline of Chemistry, School of Environmental and Life Sciences, The University of Newcastle, Callaghan, New South Wales 2308, Australia
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25
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Andersen M, Reuter K. Adsorption Enthalpies for Catalysis Modeling through Machine-Learned Descriptors. Acc Chem Res 2021; 54:2741-2749. [PMID: 34080415 DOI: 10.1021/acs.accounts.1c00153] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Heterogeneous catalysts are rather complex materials that come in many classes (e.g., metals, oxides, carbides) and shapes. At the same time, the interaction of the catalyst surface with even a relatively simple gas-phase environment such as syngas (CO and H2) may already produce a wide variety of reaction intermediates ranging from atoms to complex molecules. The starting point for creating predictive maps of, e.g., surface coverages or chemical activities of potential catalyst materials is the reliable prediction of adsorption enthalpies of all of these intermediates. For simple systems, direct density functional theory (DFT) calculations are currently the method of choice. However, a wider exploration of complex materials and reaction networks generally requires enthalpy predictions at lower computational cost.The use of machine learning (ML) and related techniques to make accurate and low-cost predictions of quantum-mechanical calculations has gained increasing attention lately. The employed approaches span from physically motivated models over hybrid physics-ΔML approaches to complete black-box methods such as deep neural networks. In recent works we have explored the possibilities for using a compressed sensing method (Sure Independence Screening and Sparsifying Operator, SISSO) to identify sparse (low-dimensional) descriptors for the prediction of adsorption enthalpies at various active-site motifs of metals and oxides. We start from a set of physically motivated primary features such as atomic acid/base properties, coordination numbers, or band moments and let the data and the compressed sensing method find the best algebraic combination of these features. Here we take this work as a starting point to categorize and compare recent ML-based approaches with a particular focus on model sparsity, data efficiency, and the level of physical insight that one can obtain from the model.Looking ahead, while many works to date have focused only on the mere prediction of databases of, e.g., adsorption enthalpies, there is also an emerging interest in our field to start using ML predictions to answer fundamental science questions about the functioning of heterogeneous catalysts or perhaps even to design better catalysts than we know today. This task is significantly simplified in works that make use of scaling-relation-based models (volcano curves), where the model outcome is determined by only one or two adsorption enthalpies and which consequently become the sole target for ML-based high-throughput screening or design. However, the availability of cheap ML energetics also allows going beyond scaling relations. On the basis of our own work in this direction, we will discuss the additional physical insight that can be achieved by integrating ML-based predictions with traditional catalysis modeling techniques from thermal and electrocatalysis, such as the computational hydrogen electrode and microkinetic modeling, as well as the challenges that lie ahead.
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Affiliation(s)
- Mie Andersen
- Aarhus Institute of Advanced Studies, Aarhus University, DK-8000 Aarhus C, Denmark
- Department of Physics and Astronomy - Center for Interstellar Catalysis, Aarhus University, DK-8000 Aarhus C, Denmark
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Lichtenbergstr. 4, 85747 Garching, Germany
| | - Karsten Reuter
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Lichtenbergstr. 4, 85747 Garching, Germany
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
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26
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Zeni C, Rossi K, Glielmo A, de Gironcoli S. Compact atomic descriptors enable accurate predictions via linear models. J Chem Phys 2021; 154:224112. [PMID: 34241204 DOI: 10.1063/5.0052961] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
We probe the accuracy of linear ridge regression employing a three-body local density representation derived from the atomic cluster expansion. We benchmark the accuracy of this framework in the prediction of formation energies and atomic forces in molecules and solids. We find that such a simple regression framework performs on par with state-of-the-art machine learning methods which are, in most cases, more complex and more computationally demanding. Subsequently, we look for ways to sparsify the descriptor and further improve the computational efficiency of the method. To this aim, we use both principal component analysis and least absolute shrinkage operator regression for energy fitting on six single-element datasets. Both methods highlight the possibility of constructing a descriptor that is four times smaller than the original with a similar or even improved accuracy. Furthermore, we find that the reduced descriptors share a sizable fraction of their features across the six independent datasets, hinting at the possibility of designing material-agnostic, optimally compressed, and accurate descriptors.
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Affiliation(s)
- Claudio Zeni
- Physics Area, International School for Advanced Studies, Trieste, Italy
| | - Kevin Rossi
- Laboratory of Nanochemistry, Institute of Chemistry and Chemical Engineering, Ecole Polytechnique Fédérale de Lausanne, Lausanne, CH, Switzerland
| | - Aldo Glielmo
- Physics Area, International School for Advanced Studies, Trieste, Italy
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27
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Li X, Chiong R, Page AJ. Group and Period-Based Representations for Improved Machine Learning Prediction of Heterogeneous Alloy Catalysts. J Phys Chem Lett 2021; 12:5156-5162. [PMID: 34032450 DOI: 10.1021/acs.jpclett.1c01319] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Machine learning has recently emerged as an efficient and powerful alternative to density functional theory for studying heterogeneous catalysis. Machine learning methods rely on a geometrical representation of the chemical environment around the catalytic adsorption site based on physical or chemical descriptors. Here, we show that replacing the atomic number in geometrical representations with elemental groups and periods (GP) yields significant improvements in predicted adsorption energies on bimetallic alloy surfaces. Notably, the GP-based Labeled Site Crystal Graph representation reported here achieves mean absolute error (MAE) ∼0.05 eV (near chemical accuracy) in predicting hydrogen adsorption and MAE ∼0.10 eV for other strong binding adsorbates such as carbon, nitrogen, oxygen, and sulfur. We also show GP-based representations to be robust in predicting adsorption on surface facets, elements, and alloys that are not included in the initial training set. This reliability makes GP-based representations an ideal basis for high-throughput approaches and materials discovery based on active learning techniques, which often involve limited training sets.
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Affiliation(s)
- Xinyu Li
- School of Electrical Engineering and Computing, The University of Newcastle, Callaghan, New South Wales 2308, Australia
| | - Raymond Chiong
- School of Electrical Engineering and Computing, The University of Newcastle, Callaghan, New South Wales 2308, Australia
| | - Alister J Page
- Discipline of Chemistry, School of Environmental and Life Sciences, The University of Newcastle, Callaghan, New South Wales 2308, Australia
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Xu J, Cao XM, Hu P. Perspective on computational reaction prediction using machine learning methods in heterogeneous catalysis. Phys Chem Chem Phys 2021; 23:11155-11179. [PMID: 33972971 DOI: 10.1039/d1cp01349a] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Heterogeneous catalysis plays a significant role in the modern chemical industry. Towards the rational design of novel catalysts, understanding reactions over surfaces is the most essential aspect. Typical industrial catalytic processes such as syngas conversion and methane utilisation can generate a large reaction network comprising thousands of intermediates and reaction pairs. This complexity not only arises from the permutation of transformations between species but also from the extra reaction channels offered by distinct surface sites. Despite the success in investigating surface reactions at the atomic scale, the huge computational expense of ab initio methods hinders the exploration of such complicated reaction networks. With the proliferation of catalysis studies, machine learning as an emerging tool can take advantage of the accumulated reaction data to emulate the output of ab initio methods towards swift reaction prediction. Here, we briefly summarise the conventional workflow of reaction prediction, including reaction network generation, ab initio thermodynamics and microkinetic modelling. An overview of the frequently used regression models in machine learning is presented. As a promising alternative to full ab initio calculations, machine learning interatomic potentials are highlighted. Furthermore, we survey applications assisted by these methods for accelerating reaction prediction, exploring reaction networks, and computational catalyst design. Finally, we envisage future directions in computationally investigating reactions and implementing machine learning algorithms in heterogeneous catalysis.
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Affiliation(s)
- Jiayan Xu
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, Centre for Computational Chemistry and Research Institute of Industrial Catalysis, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P. R. China. and School of Chemistry and Chemical Engineering, Queen's University Belfast, Belfast BT9 5AG, UK
| | - Xiao-Ming Cao
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, Centre for Computational Chemistry and Research Institute of Industrial Catalysis, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P. R. China.
| | - P Hu
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, Centre for Computational Chemistry and Research Institute of Industrial Catalysis, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P. R. China. and School of Chemistry and Chemical Engineering, Queen's University Belfast, Belfast BT9 5AG, UK
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29
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Chanussot L, Das A, Goyal S, Lavril T, Shuaibi M, Riviere M, Tran K, Heras-Domingo J, Ho C, Hu W, Palizhati A, Sriram A, Wood B, Yoon J, Parikh D, Zitnick CL, Ulissi Z. Open Catalyst 2020 (OC20) Dataset and Community Challenges. ACS Catal 2021. [DOI: 10.1021/acscatal.0c04525] [Citation(s) in RCA: 67] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Lowik Chanussot
- Facebook AI Research (FAIR), 1 Hacker Way, Menlo Park, California 94025, United States
| | - Abhishek Das
- Facebook AI Research (FAIR), 1 Hacker Way, Menlo Park, California 94025, United States
| | - Siddharth Goyal
- Facebook AI Research (FAIR), 1 Hacker Way, Menlo Park, California 94025, United States
| | - Thibaut Lavril
- Facebook AI Research (FAIR), 1 Hacker Way, Menlo Park, California 94025, United States
| | - Muhammed Shuaibi
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Morgane Riviere
- Facebook AI Research (FAIR), 1 Hacker Way, Menlo Park, California 94025, United States
| | - Kevin Tran
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Javier Heras-Domingo
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Caleb Ho
- Facebook AI Research (FAIR), 1 Hacker Way, Menlo Park, California 94025, United States
| | - Weihua Hu
- Computer Science Department, Stanford University, Stanford, California 94305, United States
| | - Aini Palizhati
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Anuroop Sriram
- Facebook AI Research (FAIR), 1 Hacker Way, Menlo Park, California 94025, United States
| | - Brandon Wood
- National Energy Research Scientific Computing Center (NERSC), Berkeley, California 94720, United States
| | - Junwoong Yoon
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Devi Parikh
- Facebook AI Research (FAIR), 1 Hacker Way, Menlo Park, California 94025, United States
- School of Interactive Computing, Georgia Tech, Atlanta, Georgia 30332, United States
| | - C. Lawrence Zitnick
- Facebook AI Research (FAIR), 1 Hacker Way, Menlo Park, California 94025, United States
| | - Zachary Ulissi
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
- Scott Institute for Energy Innovation, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
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30
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Pd on nitrogen rich polymer–halloysite nanocomposite as an environmentally benign and sustainable catalyst for hydrogenation of polyalfaolefin based lubricants. J IND ENG CHEM 2021. [DOI: 10.1016/j.jiec.2021.02.031] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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31
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Gu GH, Lim J, Wan C, Cheng T, Pu H, Kim S, Noh J, Choi C, Kim J, Goddard WA, Duan X, Jung Y. Autobifunctional Mechanism of Jagged Pt Nanowires for Hydrogen Evolution Kinetics via End-to-End Simulation. J Am Chem Soc 2021; 143:5355-5363. [PMID: 33730503 DOI: 10.1021/jacs.0c11261] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The extraordinary mass activity of jagged Pt nanowires can substantially improve the economics of the hydrogen evolution reaction (HER). However, it is a great challenge to fully unveil the HER kinetics driven by the jagged Pt nanowires with their multiscale morphology. Herein we present an end-to-end framework that combines experiment, machine learning, and multiscale advances of the past decade to elucidate the HER kinetics catalyzed by jagged Pt nanowires under alkaline conditions. The bifunctional catalysis conventionally refers to the synergistic increase in activity by the combination of two different catalysts. We report that monometals, such as jagged Pt nanowires, can exhibit bifunctional characteristics owing to its complex surface morphology, where one site prefers electrochemical proton adsorption and another is responsible for activation, resulting in a 4-fold increase in the activity. We find that the conventional design guideline that the sites with a 0 eV Gibbs free energy of adsorption are optimal for HER does not hold under alkaline conditions, and rather, an energy between -0.2 and 0.0 eV is shown to be optimal. At the reaction temperatures, the high activity arises from low-coordination-number (≤7) Pt atoms exposed by the jagged surface. Our current demonstration raises an emerging prospect to understand highly complex kinetic phenomena on the nanoscale in full by implementing end-to-end multiscale strategies.
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Affiliation(s)
- Geun Ho Gu
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Daejeon 34141, South Korea
| | - Juhyung Lim
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Daejeon 34141, South Korea
| | - Chengzhang Wan
- Department of Chemistry and Biochemistry, California NanoSystems Institute, University of California, 607 Charles E. Young Drive East, Los Angeles, California 90095-1569, United States
| | - Tao Cheng
- Institute of Functional Nano & Soft Materials, Soochow University Dushu-Lake Campus, Box 33, 199 Ren'ai Rd, Suzhou Industrial Park, Suzhou, Jiangsu 215123, People's Republic of China
| | - Heting Pu
- Department of Chemistry and Biochemistry, California NanoSystems Institute, University of California, 607 Charles E. Young Drive East, Los Angeles, California 90095-1569, United States
| | - Sungwon Kim
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Daejeon 34141, South Korea
| | - Juhwan Noh
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Daejeon 34141, South Korea
| | - Changhyeok Choi
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Daejeon 34141, South Korea
| | - Juhwan Kim
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Daejeon 34141, South Korea
| | - William A Goddard
- Materials and Process Simulation Center, California Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, United States
| | - Xiangfeng Duan
- Department of Chemistry and Biochemistry, California NanoSystems Institute, University of California, 607 Charles E. Young Drive East, Los Angeles, California 90095-1569, United States
| | - Yousung Jung
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Daejeon 34141, South Korea
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32
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Liu M, Yang Y, Kitchin JR. Semi-grand canonical Monte Carlo simulation of the acrolein induced surface segregation and aggregation of AgPd with machine learning surrogate models. J Chem Phys 2021; 154:134701. [PMID: 33832264 DOI: 10.1063/5.0046440] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
The single atom alloy of AgPd has been found to be a promising catalyst for the selective hydrogenation of acrolein. It is also known that the formation of Pd islands on the surface will greatly reduce the selectivity of the reaction. As a result, the surface segregation and aggregation of Pd on the AgPd surface under reaction conditions of selective hydrogenation of acrolein are of great interest. In this work, we lay out a workflow that can predict the surface segregation and aggregation of Pd on a FCC(111) AgPd surface with and without the presence of acrolein. We use machine learning surrogate models to predict the AgPd bulk energy, AgPd slab energy, and acrolein adsorption energy on AgPd slabs. Then, we use the semi-grand canonical Monte Carlo simulation to predict the surface segregation and aggregation under different bulk Pd concentrations. Under vacuum conditions, our method predicts that only trace amount of Pd will exist on the surface at Pd bulk concentrations less than 20%. However, with the presence of acrolein, Pd will start to aggregate as dimers on the surface at Pd bulk concentrations as low as 6.5%.
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Affiliation(s)
- Mingjie Liu
- Department of Chemical Engineering, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, Pennsylvania 15213, USA
| | - Yilin Yang
- Department of Chemical Engineering, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, Pennsylvania 15213, USA
| | - John R Kitchin
- Department of Chemical Engineering, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, Pennsylvania 15213, USA
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33
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Back S, Na J, Ulissi ZW. Efficient Discovery of Active, Selective, and Stable Catalysts for Electrochemical H2O2 Synthesis through Active Motif Screening. ACS Catal 2021. [DOI: 10.1021/acscatal.0c05494] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Seoin Back
- Department of Chemical and Biomolecular Engineering, Institute of Emergent Materials, Sogang University, Seoul 04107, Republic of Korea
| | - Jonggeol Na
- Division of Chemical Engineering and Materials Science, System Health & Engineering Major in Graduate School (BK21 Plus Program), Ewha Womans University, Seoul 03760, Republic of Korea
| | - Zachary W. Ulissi
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15217, United States
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34
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Bayesian learning of chemisorption for bridging the complexity of electronic descriptors. Nat Commun 2020; 11:6132. [PMID: 33257689 PMCID: PMC7705683 DOI: 10.1038/s41467-020-19524-z] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Accepted: 10/12/2020] [Indexed: 11/21/2022] Open
Abstract
Building upon the d-band reactivity theory in surface chemistry and catalysis, we develop a Bayesian learning approach to probing chemisorption processes at atomically tailored metal sites. With representative species, e.g., *O and *OH, Bayesian models trained with ab initio adsorption properties of transition metals predict site reactivity at a diverse range of intermetallics and near-surface alloys while naturally providing uncertainty quantification from posterior sampling. More importantly, this conceptual framework sheds light on the orbitalwise nature of chemical bonding at adsorption sites with d-states characteristics ranging from bulk-like semi-elliptic bands to free-atom-like discrete energy levels, bridging the complexity of electronic descriptors for the prediction of novel catalytic materials. Developing a generalizable model to describe adsorption processes at metal surfaces can be extremely challenging due to complex phenomena involved. Here the authors introduce a Bayesian learning approach based on ab initio data and the d-band model to capture the essential physics of adsorbate–substrate interactions.
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35
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Yoon J, Ulissi ZW. Differentiable Optimization for the Prediction of Ground State Structures (DOGSS). PHYSICAL REVIEW LETTERS 2020; 125:173001. [PMID: 33156640 DOI: 10.1103/physrevlett.125.173001] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2020] [Accepted: 09/15/2020] [Indexed: 06/11/2023]
Abstract
Ground state or relaxed inorganic structures are the starting point for most computational materials science or surface science analyses. Many of these structure relaxations represent systematic changes to the structure, but there are currently no general methods to improve the initial structure guess based on past calculations. Here we present a method to directly predict the ground state configuration using differentiable optimization and graph neural networks to learn the properties of a simple harmonic force field that approximates the ground state structure and properties. We demonstrate this flexible open source tool for improving the initial configurations for large datasets of inorganic multicomponent surface relaxations across 32 elements and the relaxation of adsorbates (H and CO) on these surfaces. Using these improved initial configurations reduces the expensive adsorbate-covered surface relaxations by approximately 50% and is complementary to other approaches to accelerate the relaxation process.
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Affiliation(s)
- Junwoong Yoon
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA
| | - Zachary W Ulissi
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA
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36
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Masa J, Andronescu C, Schuhmann W. Electrocatalysis as the Nexus for Sustainable Renewable Energy: The Gordian Knot of Activity, Stability, and Selectivity. Angew Chem Int Ed Engl 2020; 59:15298-15312. [PMID: 32608122 PMCID: PMC7496542 DOI: 10.1002/anie.202007672] [Citation(s) in RCA: 72] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Indexed: 01/11/2023]
Abstract
The use of renewable energy by means of electrochemical techniques by converting H2 O, CO2 and N2 into chemical energy sources and raw materials, is the basis for securing a future sustainable "green" energy supply. Some weaknesses and inconsistencies in the practice of determining the electrocatalytic performance, which prevents a rational bottom-up catalyst design, are discussed. Large discrepancies in material properties as well as in electrocatalytic activity and stability become obvious when materials are tested under the conditions of their intended use as opposed to the usual laboratory conditions. They advocate for uniform activity/stability correlations under application-relevant conditions, and the need for a clear representation of electrocatalytic performance by contextualization in terms of functional investigation or progress towards application is emphasized.
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Affiliation(s)
- Justus Masa
- Max Planck Institute for Chemical Energy ConversionStiftstrasse 34–3645470Mülheim an der RuhrGermany
| | - Corina Andronescu
- Faculty of ChemistryTechnical Chemistry IIIUniversity of Duisburg-EssenCarl-Benz-Str. 201, ZBT 24147057DuisburgGermany
| | - Wolfgang Schuhmann
- Analytical Chemistry—Center for Electrochemical Sciences (CES)Faculty of Chemistry and BiochemistryRuhr University BochumUniversitätstr. 15044780BochumGermany
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37
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Masa J, Andronescu C, Schuhmann W. Elektrokatalyse als Nexus für nachhaltige erneuerbare Energien – der gordische Knoten aus Aktivität, Stabilität und Selektivität. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202007672] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Justus Masa
- Max Planck Institut für Chemische Energiekonversion Stiftstraße 34–36 45470 Mülheim an der Ruhr Deutschland
| | - Corina Andronescu
- Fakultät für Chemie Technische Chemie III Universität Duisburg-Essen Carl-Benz-Straße 201, ZBT 241 47057 Duisburg Deutschland
| | - Wolfgang Schuhmann
- Analytische Chemie – Zentrum für Elektrochemie (CES) Fakultät für Chemie und Biochemie Ruhr-Universität Bochum Universitätstraße 150 44780 Bochum Deutschland
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38
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Ge L, Xu W, Chen C, Tang C, Xu L, Chen Z. Rational Prediction of Single Metal Atom Supported on Two-Dimensional Metal Diborides for Electrocatalytic N 2 Reduction Reaction with Integrated Descriptor. J Phys Chem Lett 2020; 11:5241-5247. [PMID: 32526146 DOI: 10.1021/acs.jpclett.0c01582] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Nitrogen reduction reaction (NRR) plays an important role in chemical industry, so it is significant to develop low-cost and efficient electrocatalysts for nitrogen fixation instead of the traditional Haber-Bosch process. In this paper, the electrocatalytic performance of various single atoms doped on two-dimensional metal diborides with a B vacancy for N2 reduction to ammonia is calculated and predicted. By screening numerous catalysts, we find that Ti@VB2 is the most active catalyst for NRR, and the limiting potential of Ti@VB2 for NRR is -0.61 V. Through high-throughput search and LASSO regression, an integrated descriptor combining the intrinsic properties of the single transition metal atom (TM) and the substrate (MB2) is proposed, which can fit the relationship between intrinsic properties of catalysts and NRR activity well. Therefore, this study not only discovers a promising electrocatalyst for nitrogen fixation but also provides a strategy for predicting the activity of catalysts.
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Affiliation(s)
- Lei Ge
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou 215123, China
| | - Weiwei Xu
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou 215123, China
| | - Chongyang Chen
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou 215123, China
| | - Chao Tang
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou 215123, China
| | - Lai Xu
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou 215123, China
| | - Zhongfang Chen
- Department of Chemistry, Institute for Functional Nanomaterials, University of Puerto Rico, Rio Piedras Campus, San Juan, Puerto Rico 00931, United States
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