1
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Jana A, Shepherd S, Litman Y, Wilkins DM. Learning Electronic Polarizations in Aqueous Systems. J Chem Inf Model 2024; 64:4426-4435. [PMID: 38804973 PMCID: PMC11167596 DOI: 10.1021/acs.jcim.4c00421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 05/10/2024] [Accepted: 05/14/2024] [Indexed: 05/29/2024]
Abstract
The polarization of periodically repeating systems is a discontinuous function of the atomic positions, a fact which seems at first to stymie attempts at their statistical learning. Two approaches to build models for bulk polarizations are compared: one in which a simple point charge model is used to preprocess the raw polarization to give a learning target that is a smooth function of atomic positions and the total polarization is learned as a sum of atom-centered dipoles and one in which instead the average position of Wannier centers around atoms is predicted. For a range of bulk aqueous systems, both of these methods perform perform comparatively well, with the former being slightly better but often requiring an extra effort to find a suitable point charge model. As a challenging test, we also analyze the performance of the models at the air-water interface. In this case, while the Wannier center approach delivers accurate predictions without further modifications, the preprocessing method requires augmentation with information from isolated water molecules to reach similar accuracy. Finally, we present a simple protocol to preprocess the polarizations in a data-driven way using a small number of derivatives calculated at a much lower level of theory, thus overcoming the need to find point charge models without appreciably increasing the computation cost. We believe that the training strategies presented here help the construction of accurate polarization models required for the study of the dielectric properties of realistic complex bulk systems and interfaces with ab initio accuracy.
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Affiliation(s)
- Arnab Jana
- Centre
for Quantum Materials and Technologies, School of Mathematics and
Physics, Queen’s University Belfast, Belfast BT7 1NN, U.K.
| | - Sam Shepherd
- Centre
for Quantum Materials and Technologies, School of Mathematics and
Physics, Queen’s University Belfast, Belfast BT7 1NN, U.K.
| | - Yair Litman
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
| | - David M. Wilkins
- Centre
for Quantum Materials and Technologies, School of Mathematics and
Physics, Queen’s University Belfast, Belfast BT7 1NN, U.K.
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2
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Ojha D, Henao A, Zysk F, Kühne TD. Nuclear quantum effects on the vibrational dynamics of the water-air interface. J Chem Phys 2024; 160:204114. [PMID: 38804494 DOI: 10.1063/5.0204071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Accepted: 04/11/2024] [Indexed: 05/29/2024] Open
Abstract
We have applied path-integral molecular dynamics simulations to investigate the impact of nuclear quantum effects on the vibrational dynamics of water molecules at the water-air interface. The instantaneous fluctuations in the frequencies of the O-H stretch modes are calculated using the wavelet method of time series analysis, while the time scales of vibrational spectral diffusion are determined from frequency-time correlation functions and joint probability distributions. We find that the inclusion of nuclear quantum effects leads not only to a redshift in the vibrational frequency distribution by about 120 cm-1 for both the bulk and interfacial water molecules but also to an acceleration of the vibrational dynamics at the water-air interface by as much as 35%. In addition, a blueshift of about 45 cm-1 is seen in the vibrational frequency distribution of interfacial water molecules compared to that of the bulk. Furthermore, the dynamics of water molecules beyond the topmost molecular layer was found to be rather similar to that of bulk water.
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Affiliation(s)
- Deepak Ojha
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Department of Chemistry, University of Paderborn, Warburger Str. 100, D-33098 Paderborn, Germany
| | - Andrés Henao
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Department of Chemistry, University of Paderborn, Warburger Str. 100, D-33098 Paderborn, Germany
| | - Frederik Zysk
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Department of Chemistry, University of Paderborn, Warburger Str. 100, D-33098 Paderborn, Germany
| | - Thomas D Kühne
- Center for Advanced Systems Understanding (CASUS), Untermarkt 20, D-02826 Görlitz, Germany, Helmholtz Zentrum Dresden-Rossendorf, Bautzner Landstraße 400, D-01328 Dresden, Germany, and TU Dresden, Institute of Artificial Intelligence, Chair of Computational System Sciences, Nöthnitzer Straße 46, D-01187 Dresden, Germany
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3
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Chiang KY, Yu X, Yu CC, Seki T, Sun S, Bonn M, Nagata Y. Bulklike Vibrational Coupling of Surface Water Revealed by Sum-Frequency Generation Spectroscopy. PHYSICAL REVIEW LETTERS 2023; 131:256202. [PMID: 38181372 DOI: 10.1103/physrevlett.131.256202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2022] [Revised: 10/10/2023] [Accepted: 10/30/2023] [Indexed: 01/07/2024]
Abstract
Vibrational coupling between interfacial water molecules is important for energy dissipation after on-water chemistry, yet intensely debated. Here, we quantify the interfacial vibrational coupling strength through the linewidth of surface-specific vibrational spectra of the water's O─H (O─D) stretch region for neat H_{2}O/D_{2}O and their isotopic mixtures. The local-field-effect-corrected experimental SFG spectra reveal that the vibrational coupling between hydrogen-bonded interfacial water O─H groups is comparable to that in bulk water, despite the effective density reduction at the interface.
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Affiliation(s)
- Kuo-Yang Chiang
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Xiaoqing Yu
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Chun-Chieh Yu
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Takakazu Seki
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Shumei Sun
- Department of Physics and Applied Optics Beijing Area Major Laboratory, Beijing Normal University, Beijing 100875, China
| | - Mischa Bonn
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Yuki Nagata
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
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4
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Yamaguchi S, Takayama T, Otosu T. Appraisal of TIP4P-type models at water surface. J Chem Phys 2023; 159:171101. [PMID: 37909448 DOI: 10.1063/5.0171999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Accepted: 10/03/2023] [Indexed: 11/03/2023] Open
Abstract
In view of the current situation in which non-polarizable rigid water models have been scarcely examined against surface-specific properties, we appraise TIP4P-type models at the liquid water surface on the basis of heterodyne-detected sum frequency generation (HD-SFG) spectroscopy. We find in the HD-SFG spectrum of the water surface that the peak frequency of the hydrogen-bonded OH band, the half width at half maximum of the hydrogen-bonded OH band, and the full width at half maximum of the free OH band are best reproduced by TIP4P, TIP4P/Ew, and TIP4P/Ice, respectively, whereas it is already well known that TIP4P/2005 best reproduces the surface tension. These TIP4P-type models perform better at the water surface in terms of the present appraisal items than some polarizable models in the literature.
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Affiliation(s)
- Shoichi Yamaguchi
- Department of Applied Chemistry, Graduate School of Science and Engineering, Saitama University, 255 Shimo-Okubo, Sakura, Saitama 338-8570, Japan
| | - Tetsuyuki Takayama
- Department of Applied Chemistry, Graduate School of Science and Engineering, Saitama University, 255 Shimo-Okubo, Sakura, Saitama 338-8570, Japan
| | - Takuhiro Otosu
- Department of Applied Chemistry, Graduate School of Science and Engineering, Saitama University, 255 Shimo-Okubo, Sakura, Saitama 338-8570, Japan
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5
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Litman Y, Lan J, Nagata Y, Wilkins DM. Fully First-Principles Surface Spectroscopy with Machine Learning. J Phys Chem Lett 2023; 14:8175-8182. [PMID: 37671886 PMCID: PMC10510433 DOI: 10.1021/acs.jpclett.3c01989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 08/29/2023] [Indexed: 09/07/2023]
Abstract
Our current understanding of the structure and dynamics of aqueous interfaces at the molecular level has grown substantially due to the continuous development of surface-specific spectroscopies, such as vibrational sum-frequency generation (VSFG). As in other vibrational spectroscopies, we must turn to atomistic simulations to extract all of the information encoded in the VSFG spectra. The high computational cost associated with existing methods means that they have limitations in representing systems with complex electronic structure or in achieving statistical convergence. In this work, we combine high-dimensional neural network interatomic potentials and symmetry-adapted Gaussian process regression to overcome these constraints. We show that it is possible to model VSFG signals with fully ab initio accuracy using machine learning and illustrate the versatility of our approach on the water/air interface. Our strategy allows us to identify the main sources of theoretical inaccuracy and establish a clear pathway toward the modeling of surface-sensitive spectroscopy of complex interfaces.
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Affiliation(s)
- Yair Litman
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Jinggang Lan
- Department
of Chemistry, New York University, New York, New York 10003, United States
- Simons
Center for Computational Physical Chemistry at New York University, New York, New York 10003, United States
| | - Yuki Nagata
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - David M. Wilkins
- Centre
for Quantum Materials and Technologies School of Mathematics and Physics, Queen’s University Belfast, Belfast BT7 1NN, Northern Ireland, United Kingdom
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6
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Konstantinovsky D, Yan ECY, Hammes-Schiffer S. Characterizing Interfaces by Voronoi Tessellation. J Phys Chem Lett 2023; 14:5260-5266. [PMID: 37265175 PMCID: PMC10344600 DOI: 10.1021/acs.jpclett.3c01159] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The chemistry of interfaces differs markedly from that of the bulk. Calculation of interfacial properties depends strongly on the definition of the interface, which can lead to ambiguous results that vary between studies. There is a need for a method that can explicitly define the interfaces and boundaries in molecular systems. Voronoi tessellation offers an attractive solution to this problem through its ability to determine neighbors among specified groups of atoms. Here we discuss three cases where Voronoi tessellation combined with modeling of vibrational sum frequency generation (SFG) spectroscopy yields relevant insights: the breakdown of the air-water interface into clear and intuitive molecular layers, the study of the hydration shell in biological systems, and the acceleration of difficult spectral calculations where intermolecular vibrational couplings dominate. The utility of Voronoi tessellation has broad applications that extend beyond any single type of spectroscopy or system.
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Affiliation(s)
- Daniel Konstantinovsky
- Department of Chemistry, Yale University, New Haven, CT, USA 06511
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA 06511
| | - Elsa C. Y. Yan
- Department of Chemistry, Yale University, New Haven, CT, USA 06511
| | - Sharon Hammes-Schiffer
- Department of Chemistry, Yale University, New Haven, CT, USA 06511
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA 06511
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7
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Konstantinovsky D, Perets EA, Santiago T, Olesen K, Wang Z, Soudackov AV, Yan ECY, Hammes-Schiffer S. Design of an Electrostatic Frequency Map for the NH Stretch of the Protein Backbone and Application to Chiral Sum Frequency Generation Spectroscopy. J Phys Chem B 2023; 127:2418-2429. [PMID: 36916645 PMCID: PMC10409516 DOI: 10.1021/acs.jpcb.3c00217] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/15/2023]
Abstract
We develop an electrostatic map for the vibrational NH stretch (amide A) of the protein backbone with a focus on vibrational chiral sum frequency generation spectroscopy (chiral SFG). Chiral SFG has been used to characterize protein secondary structure at interfaces using the NH stretch and to investigate chiral water superstructures around proteins using the OH stretch. Interpretation of spectra has been complicated because the NH stretch and OH stretch overlap spectrally. Although an electrostatic map for water OH developed by Skinner and co-workers was used previously to calculate the chiral SFG response of water structures around proteins, a map for protein NH that is directly responsive to biological complexity has yet to be developed. Here, we develop such a map, linking the local electric field to vibrational frequencies and transition dipoles. We apply the map to two protein systems and achieve much better agreement with experiment than was possible in our previous studies. We show that couplings between NH and OH vibrations are crucial to the line shape, which informs the interpretation of chiral SFG spectra, and that the chiral NH stretch response is sensitive to small differences in structure. This work increases the utility of the NH stretch in biomolecular spectroscopy.
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Affiliation(s)
- Daniel Konstantinovsky
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, United States
| | - Ethan A. Perets
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
- Current Address: Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, United States
| | - Ty Santiago
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
| | - Kristian Olesen
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
| | - Zhijie Wang
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
| | | | - Elsa C. Y. Yan
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
| | - Sharon Hammes-Schiffer
- Department of Chemistry, Yale University, New Haven, CT 06520, United States
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, United States
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8
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Schienbein P. Spectroscopy from Machine Learning by Accurately Representing the Atomic Polar Tensor. J Chem Theory Comput 2023; 19:705-712. [PMID: 36695707 PMCID: PMC9933433 DOI: 10.1021/acs.jctc.2c00788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Vibrational spectroscopy is a key technique to elucidate microscopic structure and dynamics. Without the aid of theoretical approaches, it is, however, often difficult to understand such spectra at a microscopic level. Ab initio molecular dynamics has repeatedly proved to be suitable for this purpose; however, the computational cost can be daunting. Here, the E(3)-equivariant neural network e3nn is used to fit the atomic polar tensor of liquid water a posteriori on top of existing molecular dynamics simulations. Notably, the introduced methodology is general and thus transferable to any other system as well. The target property is most fundamental and gives access to the IR spectrum, and more importantly, it is a highly powerful tool to directly assign IR spectral features to nuclear motion─a connection which has been pursued in the past but only using severe approximations due to the prohibitive computational cost. The herein introduced methodology overcomes this bottleneck. To benchmark the machine learning model, the IR spectrum of liquid water is calculated, indeed showing excellent agreement with the explicit reference calculation. In conclusion, the presented methodology gives a new route to calculate accurate IR spectra from molecular dynamics simulations and will facilitate the understanding of such spectra on a microscopic level.
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9
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Das B, Chandra A. Vibrational Sum Frequency Generation Spectra of Water-Vapor Interfaces Covered by Alcohols: Effects of Surface Coverage and Coupling between Oscillators. Chemphyschem 2022; 24:e202200604. [PMID: 36537178 DOI: 10.1002/cphc.202200604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2022] [Revised: 12/18/2022] [Accepted: 12/20/2022] [Indexed: 12/24/2022]
Abstract
The present study deals with the effects of varying coverage of water surface by alcohols on the vibrational sum frequency generation (VSFG) spectrum of interfacial water. We have considered two different alcohols: Tertiary butyl alcohol (TBA) whose alkyl part is fully branched and stearyl alcohol (STA) which has a long linear alkyl chain with larger hydrophobic surface area than that of TBA. With increase of the alcohol concentration, the hydrogen bonded OH stretch region of the VSFG spectrum is found to change following a regular trend for the STA-water system, whereas non-monotonic variation of the VSFG spectrum is observed for the TBA-water system which can be correlated with the presence of very different interactions of TBA molecules at different concentrations. On increasing the concentration of TBA, the hydrophobic groups get more tilted towards the water phase and significant hydrophobic interactions are introduced at higher concentrations. Whereas, for STA, there is a gradual increase in the hydrophilic interaction. Because of stacking interactions between the long chain alkyl groups, the hydrophobic parts stay outward from the water phase at higher concentrations and a regular change in the VSFG spectrum is observed. We have also presented a computationally efficient scheme to calculate the VSFG spectrum of interfacial systems for coupled oscillators which is expected to be beneficial for the treatment of coupling where the interfacial system size is inherently large.
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Affiliation(s)
- Banshi Das
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780, Bochum, Germany
| | - Amalendu Chandra
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur, India, 208016
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10
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Qu M, Huang G, Liu X, Nie X, Qi C, Wang H, Hu J, Fang H, Gao Y, Liu WT, Francisco JS, Wang C. Room temperature bilayer water structures on a rutile TiO 2(110) surface: hydrophobic or hydrophilic? Chem Sci 2022; 13:10546-10554. [PMID: 36277652 PMCID: PMC9473646 DOI: 10.1039/d2sc02047e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Accepted: 08/15/2022] [Indexed: 11/21/2022] Open
Abstract
The lack of understanding of the molecular-scale water adsorbed on TiO2 surfaces under ambient conditions has become a major obstacle for solving the long-time scientific and applications issues, such as the photo-induced wetting phenomenon and designing novel advanced TiO2-based materials. Here, with the molecular dynamics simulation, we identified an ordered water bilayer structure with a two-dimensional hydrogen bonding network on a rutile TiO2(110) surface at ambient temperature, corroborated by vibrational sum-frequency generation spectroscopy. The reduced number of hydrogen bonds between the water bilayer and water droplet results in a notable water contact angle (25 ± 5°) of the pristine TiO2 surface. This surface hydrophobicity can be enhanced by the adsorption of the formate/acetate molecules, and diminishes with dissociated H2O molecules. Our new physical framework well explained the long-time controversy on the origin of the hydrophobicity/hydrophilicity of the TiO2 surface, thus help understanding the efficiency of TiO2 devices in producing electrical energy of solar cells and the photo-oxidation of organic pollutants.
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Affiliation(s)
- Mengyang Qu
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences Shanghai 201800 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Gang Huang
- Institute of Theoretical Physics, Chinese Academy of Sciences Zhongguancun East Road 55 Beijing 100190 China
| | - Xinyi Liu
- Department of Physics, Fudan University Shanghai 200433 China
| | - Xuechuan Nie
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences Shanghai 201800 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Chonghai Qi
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences Shanghai 201800 China
| | - Huabin Wang
- Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences Chongqing 400714 China
| | - Jun Hu
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences Shanghai 201800 China
- Zhangjiang Lab, Interdisplinary Research Center, Shanghai Advanced Research Institute, Chinese Academy of Sciences Shanghai 201210 China
| | - Haiping Fang
- School of Science, East China University of Science and Technology Shanghai 200237 China
| | - Yi Gao
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences Shanghai 201800 China
- Zhangjiang Lab, Interdisplinary Research Center, Shanghai Advanced Research Institute, Chinese Academy of Sciences Shanghai 201210 China
| | - Wei-Tao Liu
- Department of Physics, Fudan University Shanghai 200433 China
| | - Joseph S Francisco
- Department of Earth and Environmental Science and Department of Chemistry, University of Pennsylvania Philadelphia Pennsylvania USA
| | - Chunlei Wang
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences Shanghai 201800 China
- Zhangjiang Lab, Interdisplinary Research Center, Shanghai Advanced Research Institute, Chinese Academy of Sciences Shanghai 201210 China
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11
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Ishiyama T. Energy relaxation dynamics of hydrogen-bonded OH vibration conjugated with free OH bond at an air/water interface. J Chem Phys 2021; 155:154703. [PMID: 34686042 DOI: 10.1063/5.0069618] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
Vibrational energy relaxation dynamics of the excited hydrogen-bonded (H-bonded) OH conjugated with free OH (OD) at an air/water (for both pure water and isotopically diluted water) interface are elucidated via non-equilibrium ab initio molecular dynamics (NE-AIMD) simulations. The calculated results are compared with those of the excited H-bonded OH in bulk liquid water reported previously. In the case of pure water, the relaxation timescale (vibrational lifetime) of the excited H-bonded OH at the interface is T1 = 0.13 ps, which is slightly larger than that in the bulk (T1 = 0.11 ps). Conversely, in the case of isotopically diluted water, the relaxation timescale of T1 = 0.74 ps in the bulk decreases to T1 = 0.26 ps at the interface, suggesting that the relaxation dynamics of the H-bonded OH are strongly dependent on the surrounding H-bond environments particularly for the isotopically diluted conditions. The relaxation paths and their rates are estimated by introducing certain constraints on the vibrational modes except for the target path in the NE-AIMD simulation to decompose the total energy relaxation rate into contributions to possible relaxation pathways. It is found that the main relaxation pathway in the case of pure water is due to intermolecular OH⋯OH vibrational coupling, which is similar to the relaxation in the bulk. In the case of isotopically diluted water, the main pathway is due to intramolecular stretch and bend couplings, which show more efficient relaxation than in the bulk because of strong H-bonding interactions specific to the air/water interface.
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Affiliation(s)
- Tatsuya Ishiyama
- Department of Applied Chemistry, Graduate School of Science and Engineering, University of Toyama, Toyama 930-8555, Japan
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12
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Khatib R, Kumar A, Sanvito S, Sulpizi M, Cucinotta CS. The nanoscale structure of the Pt-water double layer under bias revealed. Electrochim Acta 2021. [DOI: 10.1016/j.electacta.2021.138875] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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13
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Seki T, Yu CC, Chiang KY, Tan J, Sun S, Ye S, Bonn M, Nagata Y. Disentangling Sum-Frequency Generation Spectra of the Water Bending Mode at Charged Aqueous Interfaces. J Phys Chem B 2021; 125:7060-7067. [PMID: 34159786 PMCID: PMC8279539 DOI: 10.1021/acs.jpcb.1c03258] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Revised: 06/05/2021] [Indexed: 12/18/2022]
Abstract
The origin of the sum-frequency generation (SFG) signal of the water bending mode has been controversially debated in the past decade. Unveiling the origin of the signal is essential, because different assignments lead to different views on the molecular structure of interfacial water. Here, we combine collinear heterodyne-detected SFG spectroscopy at the water-charged lipid interfaces with systematic variation of the salt concentration. The results show that the bending mode response is of a dipolar, rather than a quadrupolar, nature and allows us to disentangle the response of water in the Stern and the diffuse layers. While the diffuse layer response is identical for the oppositely charged surfaces, the Stern layer responses reflect interfacial hydrogen bonding. Our findings thus corroborate that the water bending mode signal is a suitable probe for the structure of interfacial water.
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Affiliation(s)
- Takakazu Seki
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Chun-Chieh Yu
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Kuo-Yang Chiang
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Junjun Tan
- Hefei
National Laboratory for Physical
Sciences at the Microscale, and Department of Chemical Physics, University of Science and Technology of China, 230026 Hefei, China
| | - Shumei Sun
- Department
of Physics and Applied Optics Beijing Area Major Laboratory, Beijing Normal University, Beijing 100875, China
| | - Shuji Ye
- Hefei
National Laboratory for Physical
Sciences at the Microscale, and Department of Chemical Physics, University of Science and Technology of China, 230026 Hefei, China
| | - Mischa Bonn
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Yuki Nagata
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
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14
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Ahmed M, Nihonyanagi S, Kundu A, Yamaguchi S, Tahara T. Resolving the Controversy over Dipole versus Quadrupole Mechanism of Bend Vibration of Water in Vibrational Sum Frequency Generation Spectra. J Phys Chem Lett 2020; 11:9123-9130. [PMID: 33147973 DOI: 10.1021/acs.jpclett.0c02644] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Recently, there has been controversy over whether the HOH bend signal of water in the vibrational sum frequency generation (VSFG) spectrum arises from the conventional dipole mechanism or the quadrupole mechanism. Here, we show that the Im χ(2) (the imaginary part of the second-order nonlinear susceptibility) spectra of the HOH bend mode of water at oppositely charged monolayer/water interfaces all exhibit positive bands, irrespective of the difference in the sign of the charge at the interface. Furthermore, it is found that the peak frequency of the HOH bend band substantially changes depending on the chemical structure of the charged headgroup located at the interface. These results demonstrate that the VSFG signal of the HOH bend vibration is generated from interfacial water with the interfacial quadrupole mechanism that is associated with the large field gradient of incident lights localized in a very thin region at the interface.
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Affiliation(s)
- Mohammed Ahmed
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Satoshi Nihonyanagi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Achintya Kundu
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Shoichi Yamaguchi
- Department of Applied Chemistry, Graduate School of Science and Engineering, Saitama University, 255 Shimo-Okubo, Sakura, Saitama 338-8570, Japan
| | - Tahei Tahara
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
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15
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Ojha D, Kühne TD. "On-The-Fly" Calculation of the Vibrational Sum-Frequency Generation Spectrum at the Air-Water Interface. Molecules 2020; 25:E3939. [PMID: 32872259 PMCID: PMC7504776 DOI: 10.3390/molecules25173939] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 08/23/2020] [Accepted: 08/25/2020] [Indexed: 12/24/2022] Open
Abstract
In the present work, we provide an electronic structure based method for the "on-the-fly" determination of vibrational sum frequency generation (v-SFG) spectra. The predictive power of this scheme is demonstrated at the air-water interface. While the instantaneous fluctuations in dipole moment are obtained using the maximally localized Wannier functions, the fluctuations in polarizability are approximated to be proportional to the second moment of Wannier functions. The spectrum henceforth obtained captures the signatures of hydrogen bond stretching, bending, as well as low-frequency librational modes.
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Affiliation(s)
- Deepak Ojha
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, Department of Chemistry, Paderborn University, Warburger Str. 100, 33098 Paderborn, Germany;
| | - Thomas D. Kühne
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, Department of Chemistry, Paderborn University, Warburger Str. 100, 33098 Paderborn, Germany;
- Paderborn Center for Parallel Computing and Institute for Lightweight Design, Paderborn University, Warburger Str. 100, D-33098 Paderborn, Germany
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16
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Martins-Costa MTC, Ruiz-López MF. Vibrational Sum-Frequency Generation Spectroscopy in the Energy Representation from Dual-Level Molecular Dynamics Simulations. J Phys Chem A 2020; 124:5675-5683. [DOI: 10.1021/acs.jpca.0c02901] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Marilia T. C. Martins-Costa
- Laboratoire de Physique et Chimie Théoriques, UMR CNRS 7019, University of Lorraine, CNRS, BP 70239, 54506 Vandoeuvre-lès-Nancy, France
| | - Manuel F. Ruiz-López
- Laboratoire de Physique et Chimie Théoriques, UMR CNRS 7019, University of Lorraine, CNRS, BP 70239, 54506 Vandoeuvre-lès-Nancy, France
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17
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Tang F, Ohto T, Sun S, Rouxel JR, Imoto S, Backus EHG, Mukamel S, Bonn M, Nagata Y. Molecular Structure and Modeling of Water-Air and Ice-Air Interfaces Monitored by Sum-Frequency Generation. Chem Rev 2020; 120:3633-3667. [PMID: 32141737 PMCID: PMC7181271 DOI: 10.1021/acs.chemrev.9b00512] [Citation(s) in RCA: 65] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Indexed: 12/26/2022]
Abstract
From a glass of water to glaciers in Antarctica, water-air and ice-air interfaces are abundant on Earth. Molecular-level structure and dynamics at these interfaces are key for understanding many chemical/physical/atmospheric processes including the slipperiness of ice surfaces, the surface tension of water, and evaporation/sublimation of water. Sum-frequency generation (SFG) spectroscopy is a powerful tool to probe the molecular-level structure of these interfaces because SFG can specifically probe the topmost interfacial water molecules separately from the bulk and is sensitive to molecular conformation. Nevertheless, experimental SFG has several limitations. For example, SFG cannot provide information on the depth of the interface and how the orientation of the molecules varies with distance from the surface. By combining the SFG spectroscopy with simulation techniques, one can directly compare the experimental data with the simulated SFG spectra, allowing us to unveil the molecular-level structure of water-air and ice-air interfaces. Here, we present an overview of the different simulation protocols available for SFG spectra calculations. We systematically compare the SFG spectra computed with different approaches, revealing the advantages and disadvantages of the different methods. Furthermore, we account for the findings through combined SFG experiments and simulations and provide future challenges for SFG experiments and simulations at different aqueous interfaces.
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Affiliation(s)
- Fujie Tang
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physics, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Tatsuhiko Ohto
- Graduate
School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
| | - Shumei Sun
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physical Chemistry, University of Vienna, Währinger Strasse 42, 1090 Vienna, Austria
| | - Jérémy R. Rouxel
- Department
of Chemistry and Department of Physics and Astronomy, University of California, Irvine, Irvine, California 92697-2025, United States
| | - Sho Imoto
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
| | - Ellen H. G. Backus
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physical Chemistry, University of Vienna, Währinger Strasse 42, 1090 Vienna, Austria
| | - Shaul Mukamel
- Department
of Chemistry and Department of Physics and Astronomy, University of California, Irvine, Irvine, California 92697-2025, United States
| | - Mischa Bonn
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
| | - Yuki Nagata
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physics, State Key Laboratory of Surface Physics and Key Laboratory
of Micro- and Nano-Photonic Structures (MOE), Fudan University, Shanghai 200433, China
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18
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Ojha D, Kaliannan NK, Kühne TD. Time-dependent vibrational sum-frequency generation spectroscopy of the air-water interface. Commun Chem 2019. [DOI: 10.1038/s42004-019-0220-6] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Abstract
Vibrational sum-frequency generation spectroscopy is a powerful method to study the microscopic structure and dynamics of interfacial systems. Here we demonstrate a simple computational approach to calculate the time-dependent, frequency-resolved vibrational sum-frequency generation spectrum (TD-vSFG) of the air-water interface. Using this approach, we show that at the air-water interface, the transition of water molecules with bonded OH modes to free OH modes occurs at a time scale of $$\sim$$
~
3 ps, whereas water molecules with free OH modes rapidly make a transition to a hydrogen-bonded state within $$\sim$$
~
2 ps. Furthermore, we also elucidate the origin of the observed differential dynamics based on the time-dependent evolution of water molecules in the different local solvent environments.
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19
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Ishiyama T, Morita A. Nuclear Quantum Effect on the χ (2) Band Shape of Vibrational Sum Frequency Generation Spectra of Normal and Deuterated Water Surfaces. J Phys Chem Lett 2019; 10:5070-5075. [PMID: 31414814 DOI: 10.1021/acs.jpclett.9b02069] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
In the vibrational sum frequency generation (VSFG) spectrum of the air/water interface, there is an open question whether the imaginary spectrum of nonlinear susceptibility Im[χ(2)] has a positive band in the low-frequency tail of the OH stretching band. We previously elucidated by molecular dynamics (MD) analysis of the VSFG spectrum that the positive band could arise from particularly strong hydrogen-bonded water pairs at the water surface. This mechanism should be emphasized in OD stretching in comparison to OH, because OD forms stronger hydrogen bonds. Therefore, we calculated the Im[χ(2)] spectra of normal and deuterated water surfaces by MD simulation including the nuclear quantum effect and demonstrated that the low-frequency positive feature could arise in the tail of the OD stretching band. This positive feature is sensitive to the oxygen-oxygen distance of hydrogen-bonding pairs at the surface and hence the temperature and disappears with increasing temperature.
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Affiliation(s)
- Tatsuya Ishiyama
- Department of Applied Chemistry, Graduate School of Science and Engineering, University of Toyama, Toyama 930-8555, Japan
| | - Akihiro Morita
- Department of Chemistry Graduate School of Science Tohoku University Sendai 980-8578, Japan
- Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Kyoto 615-8520, Japan
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20
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Melani G, Nagata Y, Campen RK, Saalfrank P. Vibrational spectra of dissociatively adsorbed D 2O on Al-terminated α-Al 2O 3(0001) surfaces from ab initio molecular dynamics. J Chem Phys 2019; 150:244701. [PMID: 31255084 DOI: 10.1063/1.5099895] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Water can adsorb molecularly or dissociatively onto different sites of metal oxide surfaces. These adsorption sites can be disentangled using surface-sensitive vibrational spectroscopy. Here, we model Vibrational Sum Frequency (VSF) spectra for various forms of dissociated, deuterated water on a reconstructed, Al-terminated α-Al2O3(0001) surface at submonolayer coverages (the so-called 1-2, 1-4, and 1-4' modes). Using an efficient scheme based on velocity-velocity autocorrelation functions, we go beyond previous normal mode analyses by including anharmonicity, mode coupling, and thermal surface motion in the framework of ab initio molecular dynamics. In this way, we calculate vibrational density of states curves, infrared, and VSF spectra. Comparing computed VSF spectra with measured ones, we find that relative frequencies of resonances are in quite good agreement and linewidths are reasonably well represented, while VSF intensities coincide not well. We argue that intensities are sensitively affected by local interactions and thermal fluctuations, even at such low coverage, while absolute peak positions strongly depend on the choice of the electronic structure method and on the appropriate inclusion of anharmonicity.
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Affiliation(s)
- Giacomo Melani
- Theoretische Chemie, Institut für Chemie, Universität Potsdam, Karl-Liebknecht-Straße 24-25, D-14476 Potsdam-Golm, Germany
| | - Yuki Nagata
- Max-Planck-Institut für Polymerforschung, Ackermannweg 10, 55128 Mainz, Germany
| | - R Kramer Campen
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, D-14195 Berlin, Germany
| | - Peter Saalfrank
- Theoretische Chemie, Institut für Chemie, Universität Potsdam, Karl-Liebknecht-Straße 24-25, D-14476 Potsdam-Golm, Germany
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21
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Dodia M, Ohto T, Imoto S, Nagata Y. Structure and Dynamics of Water at the Water-Air Interface Using First-Principles Molecular Dynamics Simulations. II. NonLocal vs Empirical van der Waals Corrections. J Chem Theory Comput 2019; 15:3836-3843. [PMID: 31074989 PMCID: PMC6750744 DOI: 10.1021/acs.jctc.9b00253] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
![]()
van der Waals (vdW) correction schemes
have been recognized to
be essential for an accurate description of liquid water in first-principles
molecular dynamics simulation. The description of the structure and
dynamics of water is governed by the type of the vdW corrections.
So far, two vdW correction schemes have been often used: empirical
vdW corrections and nonlocal vdW corrections. In this paper, we assess
the influence of the empirical vs nonlocal vdW correction schemes
on the structure and dynamics of water at the water–air interface.
Since the structure of water at the water–air interface is
established by a delicate balance of hydrogen bond formation and breaking,
the simulation at the water–air interface provides a unique
platform to testify as to the heterogeneous interaction of water.
We used the metrics [Ohto et al. , 2019, 15, 595−60230468702] which
are directly connected with the sum-frequency generation spectroscopic
measurement. We find that the overall performance of nonlocal vdW
methods is either similar or worse compared to the empirical vdW methods.
We also investigated the performance of the optB88-DRSLL functional,
which showed slightly less accuracy than the revPBE-D3 method. We
conclude that the revPBE-D3 method shows the best performance for
describing the interfacial water.
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Affiliation(s)
- Mayank Dodia
- Max Planck Institute for Polymer Research, Ackermannweg 10 , 55128 Mainz , Germany
| | - Tatsuhiko Ohto
- Graduate School of Engineering Science , Osaka University , 1-3 Machikaneyama , Toyonaka, Osaka 560-8531 , Japan
| | - Sho Imoto
- Max Planck Institute for Polymer Research, Ackermannweg 10 , 55128 Mainz , Germany
| | - Yuki Nagata
- Max Planck Institute for Polymer Research, Ackermannweg 10 , 55128 Mainz , Germany
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22
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Kaliannan NK, Henao Aristizabal A, Wiebeler H, Zysk F, Ohto T, Nagata Y, Kühne TD. Impact of intermolecular vibrational coupling effects on the sum-frequency generation spectra of the water/air interface. Mol Phys 2019. [DOI: 10.1080/00268976.2019.1620358] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Naveen Kumar Kaliannan
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, University of Paderborn, Paderborn, Germany
| | - Andres Henao Aristizabal
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, University of Paderborn, Paderborn, Germany
| | - Hendrik Wiebeler
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, University of Paderborn, Paderborn, Germany
| | - Frederik Zysk
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, University of Paderborn, Paderborn, Germany
| | - Tatsuhiko Ohto
- Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka, Japan
| | - Yuki Nagata
- Max-Planck Institute for Polymer Research, Mainz, Germany
| | - Thomas D. Kühne
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, University of Paderborn, Paderborn, Germany
- Paderborn Center for Parallel Computing and Institute for Lightweight Design, University of Paderborn, Paderborn, Germany
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23
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Shen Z, Lin CK, Zhu C, Lin SH. First-principles study on sum-frequency generation spectroscopy of methanol adsorbed on TiO 2(110) surface: Effects of substrate and molecular coverages. J Chem Phys 2019; 150:184112. [PMID: 31091896 DOI: 10.1063/1.5088885] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this work, starting from the general theory of sum-frequency generation (SFG), we proposed a computational strategy utilizing density functional theory with periodic boundary conditions to simulate the vibrational SFG of molecules/solid surface adsorption system. The method has been applied to the CH3OH/TiO2(110) system successfully. Compared with the isolated molecule model, our theoretical calculations showed that the TiO2 substrate can significantly alter the second-order susceptibilities of a methanol molecule which is directly related to the SFG intensity. In addition, the SFG spectra have obvious changes while the methanol coverage increases, especially for the OH vibration peaks. Our theoretical spectra agree reasonably well with experimental measurements at 1 ML coverage, and an interesting peak which is absent in the theoretical spectra is tentatively assigned to some CH3 stretch vibration of methanol adsorbed on the oxygen vacancy of TiO2.
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Affiliation(s)
- Zhitao Shen
- Department of Applied Chemistry and Institute of Molecular Science, National Chiao Tung University, Hsinchu 30010, Taiwan
| | - Chih-Kai Lin
- Center for Condensed Matter Sciences, National Taiwan University, Taipei 106, Taiwan
| | - Chaoyuan Zhu
- Department of Applied Chemistry and Institute of Molecular Science, National Chiao Tung University, Hsinchu 30010, Taiwan
| | - Sheng Hsien Lin
- Department of Applied Chemistry and Institute of Molecular Science, National Chiao Tung University, Hsinchu 30010, Taiwan
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24
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Calegari Andrade MF, Ko HY, Car R, Selloni A. Structure, Polarization, and Sum Frequency Generation Spectrum of Interfacial Water on Anatase TiO 2. J Phys Chem Lett 2018; 9:6716-6721. [PMID: 30388372 DOI: 10.1021/acs.jpclett.8b03103] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The photocatalytic activity of TiO2 for water splitting has been known for decades, yet the adsorption structure and hydrogen bonding of water at the interface with TiO2 have remained controversial. We investigate the prototypical aqueous interface with anatase TiO2 (101) using ab initio molecular dynamics (AIMD) with the strongly constrained and appropriately normed (SCAN) density functional, recently shown to provide an excellent description of the properties of bulk liquid water. We find that water forms a stable bilayer of intact molecules with ice-like dynamics and enhanced dipole moment and polarizability on the anatase surface. The orientational order and H-bond environment of interfacial water are reflected in the computed sum frequency generation (SFG) spectrum, which agrees well with recent measurements in the OH stretching frequency range (3000-3600 cm-1). Additional AIMD simulations for a model interface with 66% of dissociated water in the contact layer show that surface hydroxyls disrupt the order in the bilayer and lead to a much faster orientational dynamics of interfacial water. Nonetheless, the computed SFG spectrum for the hydroxylated surface also agrees with experiment, suggesting that SFG measurements in a wider frequency range would be necessary to unambiguously identify the character of interfacial water on anatase.
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Affiliation(s)
| | - Hsin-Yu Ko
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
| | - Roberto Car
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
| | - Annabella Selloni
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
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25
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Ohto T, Dodia M, Imoto S, Nagata Y. Structure and Dynamics of Water at the Water–Air Interface Using First-Principles Molecular Dynamics Simulations within Generalized Gradient Approximation. J Chem Theory Comput 2018; 15:595-602. [DOI: 10.1021/acs.jctc.8b00567] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Tatsuhiko Ohto
- Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
| | - Mayank Dodia
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Sho Imoto
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Yuki Nagata
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
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26
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Melani G, Nagata Y, Wirth J, Saalfrank P. Vibrational spectroscopy of hydroxylated α-Al 2O 3(0001) surfaces with and without water: An ab initio molecular dynamics study. J Chem Phys 2018; 149:014707. [PMID: 29981538 DOI: 10.1063/1.5023347] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Using gradient- and dispersion-corrected density functional theory in connection with ab initio molecular dynamics and efficient, parametrized Velocity-Velocity Autocorrelation Function (VVAF) methodology, we study the vibrational spectra (Vibrational Sum Frequency, VSF, and infrared, IR) of hydroxylated α-Al2O3(0001) surfaces with and without additional water. Specifically, by considering a naked hydroxylated surface and the same surface with a particularly stable, "ice-like" hexagonal water later allows us to identify and disentangle main spectroscopic bands of OH bonds, their orientation and dynamics, and the role of water adsorption. In particular, we assign spectroscopic signals around 3700 cm-1 as being dominated by perpendicularly oriented non-hydrogen bonded aluminol groups, with and without additional water. Furthermore, the thin water layer gives spectroscopic signals which are already comparable to previous theoretical and experimental findings for the solid/(bulk) liquid interface, showing that water molecules closest to the surface play a decisive role in the vibrational response of these systems. From a methodological point of view, the effects of temperature, anharmonicity, hydrogen-bonding, and structural dynamics are taken into account and analyzed, allowing us to compare the calculated IR and VSF spectra with the ones based on normal mode analysis and vibrational density of states. The VVAF approach employed in this work appears to be a computationally accurate yet feasible method to address the vibrational fingerprints and dynamical properties of water/metal oxide interfaces.
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Affiliation(s)
- Giacomo Melani
- Institut für Chemie, Universität Potsdam, Karl-Liebknecht-Strasse 24-25, D-14476 Potsdam-Golm, Germany
| | - Yuki Nagata
- Max-Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Jonas Wirth
- Institut für Chemie, Universität Potsdam, Karl-Liebknecht-Strasse 24-25, D-14476 Potsdam-Golm, Germany
| | - Peter Saalfrank
- Institut für Chemie, Universität Potsdam, Karl-Liebknecht-Strasse 24-25, D-14476 Potsdam-Golm, Germany
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27
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Cyran JD, Backus EHG, Nagata Y, Bonn M. Structure from Dynamics: Vibrational Dynamics of Interfacial Water as a Probe of Aqueous Heterogeneity. J Phys Chem B 2018; 122:3667-3679. [PMID: 29490138 PMCID: PMC5900549 DOI: 10.1021/acs.jpcb.7b10574] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
![]()
The structural heterogeneity of water
at various interfaces can be revealed by time-resolved sum-frequency
generation spectroscopy. The vibrational dynamics of the O–H
stretch vibration of interfacial water can reflect structural variations.
Specifically, the vibrational lifetime is typically found to increase
with increasing frequency of the O–H stretch vibration, which
can report on the hydrogen-bonding heterogeneity of water. We compare
and contrast vibrational dynamics of water in contact with various
surfaces, including vapor, biomolecules, and solid interfaces. The
results reveal that variations in the vibrational lifetime with vibrational
frequency are very typical, and can frequently be accounted for by
the bulk-like heterogeneous response of interfacial water. Specific
interfaces exist, however, for which the behavior is less straightforward.
These insights into the heterogeneity of interfacial water thus obtained
contribute to a better understanding of complex phenomena taking place
at aqueous interfaces, such as photocatalytic reactions and protein
folding.
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Affiliation(s)
- Jenée D Cyran
- Max Planck Institute for Polymer Research , Ackermannweg 10 , 55128 Mainz , Germany
| | - Ellen H G Backus
- Max Planck Institute for Polymer Research , Ackermannweg 10 , 55128 Mainz , Germany
| | - Yuki Nagata
- Max Planck Institute for Polymer Research , Ackermannweg 10 , 55128 Mainz , Germany
| | - Mischa Bonn
- Max Planck Institute for Polymer Research , Ackermannweg 10 , 55128 Mainz , Germany
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28
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Zheng RH, Wei WM, Xu M, Shi Q. Sum-frequency vibrational spectroscopy of limonene chiral liquids due to the nonadiabatic effect. Phys Chem Chem Phys 2018; 20:7053-7058. [PMID: 29473923 DOI: 10.1039/c7cp08473k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Using quantum computations we study sum-frequency vibrational spectroscopy of limonene chiral liquids due to the nonadiabatic effect in the non-resonant case for the first time. The nonadiabatic effect has an important impact on non-resonant antisymmetric polarizability and chiral sum-frequency vibrational spectroscopy. The theoretical spectroscopy agrees with the experimental spectroscopy. However, the nonadiabatic effect only has a small influence on non-resonant Raman. Bulk sum-frequency vibrational spectroscopy may become a powerful method of investigating the nonadiabatic effect and the nonradiative transition between excited electronic states for chiral molecules.
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Affiliation(s)
- Ren-Hui Zheng
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, P. R. China.
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29
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Nguyen MT, Wang Z, Rod KA, Childers MI, Fernandez C, Koech PK, Bennett WD, Rousseau R, Glezakou VA. Atomic Origins of the Self-Healing Function in Cement-Polymer Composites. ACS APPLIED MATERIALS & INTERFACES 2018; 10:3011-3019. [PMID: 29284262 DOI: 10.1021/acsami.7b13309] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Motivated by recent advances in self-healing cement and epoxy polymer composites, we present a combined ab initio molecular dynamics and sum frequency generation (SFG) vibrational spectroscopy study of a calcium-silicate-hydrate/polymer interface. On stable, low-defect surfaces, the polymer only weakly adheres through coordination and hydrogen bonding interactions and can be easily mobilized toward defected surfaces. Conversely, on fractured surfaces, the polymer strongly anchors through ionic Ca-O bonds resulting from the deprotonation of polymer hydroxyl groups. In addition, polymer S-S groups are turned away from the cement-polymer interface, allowing for the self-healing function within the polymer. The overall elasticity and healing properties of these composites stem from a flexible hydrogen bonding network that can readily adapt to surface morphology. The theoretical vibrational signals associated with the proposed cement-polymer interfacial chemistry were confirmed experimentally by SFG vibrational spectroscopy.
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Affiliation(s)
- Manh-Thuong Nguyen
- Basic and Applied Molecular Foundations, Physical and Computational Sciences Directorate, ‡Energy and Environment Directorate, and §Geochemistry, Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory , P.O. Box 999, Richland, Washington 99352, United States
| | - Zheming Wang
- Basic and Applied Molecular Foundations, Physical and Computational Sciences Directorate, ‡Energy and Environment Directorate, and §Geochemistry, Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory , P.O. Box 999, Richland, Washington 99352, United States
| | - Kenton A Rod
- Basic and Applied Molecular Foundations, Physical and Computational Sciences Directorate, ‡Energy and Environment Directorate, and §Geochemistry, Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory , P.O. Box 999, Richland, Washington 99352, United States
| | - M Ian Childers
- Basic and Applied Molecular Foundations, Physical and Computational Sciences Directorate, ‡Energy and Environment Directorate, and §Geochemistry, Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory , P.O. Box 999, Richland, Washington 99352, United States
| | - Carlos Fernandez
- Basic and Applied Molecular Foundations, Physical and Computational Sciences Directorate, ‡Energy and Environment Directorate, and §Geochemistry, Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory , P.O. Box 999, Richland, Washington 99352, United States
| | - Phillip K Koech
- Basic and Applied Molecular Foundations, Physical and Computational Sciences Directorate, ‡Energy and Environment Directorate, and §Geochemistry, Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory , P.O. Box 999, Richland, Washington 99352, United States
| | - Wendy D Bennett
- Basic and Applied Molecular Foundations, Physical and Computational Sciences Directorate, ‡Energy and Environment Directorate, and §Geochemistry, Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory , P.O. Box 999, Richland, Washington 99352, United States
| | - Roger Rousseau
- Basic and Applied Molecular Foundations, Physical and Computational Sciences Directorate, ‡Energy and Environment Directorate, and §Geochemistry, Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory , P.O. Box 999, Richland, Washington 99352, United States
| | - Vassiliki-Alexandra Glezakou
- Basic and Applied Molecular Foundations, Physical and Computational Sciences Directorate, ‡Energy and Environment Directorate, and §Geochemistry, Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory , P.O. Box 999, Richland, Washington 99352, United States
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Bejagam KK, Singh S, Deshmukh SA. Development of non-bonded interaction parameters between graphene and water using particle swarm optimization. J Comput Chem 2017; 39:721-734. [PMID: 29266458 DOI: 10.1002/jcc.25141] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2017] [Revised: 11/15/2017] [Accepted: 11/27/2017] [Indexed: 01/21/2023]
Abstract
New Lennard-Jones parameters have been developed to describe the interactions between atomistic model of graphene, represented by REBO potential, and five commonly used all-atom water models, namely SPC, SPC/E, SPC/Fw, SPC/Fd, and TIP3P/Fs by employing particle swarm optimization (PSO) method. These new parameters were optimized to reproduce the macroscopic contact angle of water on a graphene sheet. The calculated line tension was in the order of 10-11 J/m for the droplets of all water models. Our molecular dynamics simulations indicate the preferential orientation of water molecules near graphene-water interface with one OH bond pointing toward the graphene surface. Detailed analysis of simulation trajectories reveals the presence of water molecules with ≤∼1, ∼2, and ∼4 hydrogen bonds at the surface of air-water interface, graphene-water interface, and bulk region of the water droplet, respectively. Presence of water molecules with ≤∼1 and ∼2 hydrogen bonds suggest the existence of water clusters of different sizes at these interfaces. The trends observed in the libration, bending, and stretching bands of the vibrational spectra are closely associated with these structural features of water. The inhomogeneity in hydrogen bond network of water at the air-water and graphene-water interface is manifested by broadening of the peaks in the libration band for water present at these interfaces. The stretching band for the molecules in water droplet shows a blue shift as compared to the pure bulk water, which conjecture the presence of weaker hydrogen bond network in a droplet. © 2017 Wiley Periodicals, Inc.
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Affiliation(s)
- Karteek K Bejagam
- Department of Chemical Engineering, Virginia Tech, Blacksburg, Virginia, 24061
| | - Samrendra Singh
- Case New Holland Industrial, 6900 Veterans Blvd, Burr Ridge, Illinois, 60527
| | - Sanket A Deshmukh
- Department of Chemical Engineering, Virginia Tech, Blacksburg, Virginia, 24061
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