Leveraging the Mechanism of Oxidative Decay for Adenylate Kinase to Design Structural and Functional Resistances

Lysine and Arginine Reactivity and Transformation Products during Peptide Chlorination

Chlorine reactions with peptide-bound amino acids form disinfection byproducts and contribute to pathogen inactivation by degrading protein structure and function. Peptide-bound lysine and arginine are two of the seven chlorine-reactive amino acids, but their reactions with chlorine are poorly characterized. Using N-acetylated lysine and arginine as models for peptide-bound amino acids and authentic small peptides, this study demonstrated conversion of the lysine side chain to mono- and dichloramines and the arginine side chain to mono-, di-, and trichloramines in ≤0.5 h. The lysine chloramines formed lysine nitrile and lysine aldehyde at ∼6% yield over ∼1 week. The arginine chloramines formed ornithine nitrile at ∼3% yield over ∼1 week but not the corresponding aldehyde. While researchers hypothesized that the protein aggregation observed during chlorination arises from covalent Schiff base cross-links between lysine aldehyde and lysine on different proteins, no evidence for Schiff base formation was observed. The rapid formation of chloramines and their slow decay indicate that they are more relevant than the aldehydes and nitriles to byproduct formation and pathogen inactivation over timescales relevant to drinking water distribution. Previous research has indicated that lysine chloramines are cytotoxic and genotoxic to human cells. The conversion of lysine and arginine cationic side chains to neutral chloramines should alter protein structure and function and enhance protein aggregation by hydrophobic interactions, contributing to pathogen inactivation.

Identification of chlorinated products from tyrosine and tyrosyl dipeptides during chlorination: a computational study

Chlorinated amino acids and peptides, as the model modified protein structures relevant to pathogen inactivation and an emerging class of disinfection byproducts (DBPs) with potential health risks to humans, have attracted much attention. However, due to a large variety of peptides (over 600) identified in source water and most of them featuring multiple reaction sites, it is a huge challenge to identify all the chlorinated amino acids and peptides. As a good complement to the experiment, quantum chemical computation can be used to uncover the chlorination sites and chlorinated products. In this study, frequently detected tyrosine (Tyr) and tyrosine-amide (Tyr-Am) as well as N-acetyl-tyrosine (NacTyr) were chosen as the model amino acid and model dipeptides, respectively. The results indicate that the kinetic reactivity order of reactive sites with estimated apparent rate constants (k_obs-est, in M^-1 s^-1) is amino N (10^7-8) ≫ mono-chlorinated amino N (10^1-3) >/≈ phenol ortho-C (10^0-3) ≫ meta-C (10^-3), and phenol ortho-C5 (10^2-3) > ortho-C3 (10^0-2) for dipeptides, while in thermodynamics, phenol C sites are more favorable than amino N sites. Moreover, due to the smaller differences of k_obs-est values between the mono-chlorinated amino N and the phenol ortho-C sites in tyrosyl dipeptides compared to free Tyr, more kinds of C-chloro-tyrosyl dipeptides are likely to be generated. Additionally, a structure-kinetic reactivity relationship study reveals good correlations between lg k_obs-est and NPA charges and BDEs of protons released from amino/hydroxyl groups in tyrosyl compounds rather than FED² (HOMO). The results are helpful to further understand the reactivity of various reaction sites in peptides and identify chlorinated products from tyrosyl peptides during chlorination.

Evaluation of Histidine Reactivity and Byproduct Formation during Peptide Chlorination

The covalent modifications resulting from chlorine reactions with peptide-bound amino acids contribute to pathogen inactivation and disinfection byproduct (DBP) formation. Previous research suggested that histidine is the third most reactive of the seven chlorine-reactive amino acids, leading to the formation of 2-chlorohistidine, 2-oxohistidine, or low-molecular-weight byproducts such as trihalomethanes. This study demonstrates that histidine is less reactive toward formation of chlorine transformation products (transformation time scale of hours to days) than five of the seven chlorine-reactive amino acids, including tyrosine (transformation time scale of minutes). Chlorine targeted tyrosine in preference to histidine within peptides, indicating that chlorine reactions with tyrosine and other more reactive amino acids could contribute more to the structural modifications to proteins over the short time scales relevant to pathogen inactivation. Over the longer time scales relevant to disinfection byproduct formation in treatment plants or distribution systems, this study identified β-cyanoalanine as the dominant transformation product of chlorine reactions with peptide-bound histidine, with molar yields of ∼50% after 1 day. While a chlorinated histidine intermediate was observed at lower yields (maximum ∼5%), the cumulative concentration of the conventional low-molecular-weight DBPs (e.g., trihalomethanes) was ≤7%. These findings support the need to identify the high-yield initial transformation products of chlorine reactions with important precursor structures to facilitate the identification of unknown DBPs.