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Emelianov AV, Pettersson M, Bobrinetskiy II. Ultrafast Laser Processing of 2D Materials: Novel Routes to Advanced Devices. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024; 36:e2402907. [PMID: 38757602 DOI: 10.1002/adma.202402907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 04/23/2024] [Indexed: 05/18/2024]
Abstract
Ultrafast laser processing has emerged as a versatile technique for modifying materials and introducing novel functionalities. Over the past decade, this method has demonstrated remarkable advantages in the manipulation of 2D layered materials, including synthesis, structuring, functionalization, and local patterning. Unlike continuous-wave and long-pulsed optical methods, ultrafast lasers offer a solution for thermal heating issues. Nonlinear interactions between ultrafast laser pulses and the atomic lattice of 2D materials substantially influence their chemical and physical properties. This paper highlights the transformative role of ultrafast laser pulses in maskless green technology, enabling subtractive, and additive processes that unveil ways for advanced devices. Utilizing the synergetic effect between the energy states within the atomic layers and ultrafast laser irradiation, it is feasible to achieve unprecedented resolutions down to several nanometers. Recent advancements are discussed in functionalization, doping, atomic reconstruction, phase transformation, and 2D and 3D micro- and nanopatterning. A forward-looking perspective on a wide array of applications of 2D materials, along with device fabrication featuring novel physical and chemical properties through direct ultrafast laser writing, is also provided.
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Affiliation(s)
- Aleksei V Emelianov
- Nanoscience Center, Department of Chemistry, University of Jyväskylä, Jyväskylä, FI-40014, Finland
| | - Mika Pettersson
- Nanoscience Center, Department of Chemistry, University of Jyväskylä, Jyväskylä, FI-40014, Finland
| | - Ivan I Bobrinetskiy
- BioSense Institute - Research and Development Institute for Information Technologies in Biosystems, University of Novi Sad, Novi Sad, 21000, Serbia
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2
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Merino JP, Brosel-Oliu S, Rius G, Illa X, Sulleiro MV, Del Corro E, Masvidal-Codina E, Bonaccini Calia A, Garrido JA, Villa R, Guimerà-Brunet A, Prato M, Criado A, Prats-Alfonso E. Ethanol Solvation of Polymer Residues in Graphene Solution-Gated Field Effect Transistors. ACS SUSTAINABLE CHEMISTRY & ENGINEERING 2024; 12:9133-9143. [PMID: 38910878 PMCID: PMC11191359 DOI: 10.1021/acssuschemeng.4c01538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 05/22/2024] [Accepted: 05/22/2024] [Indexed: 06/25/2024]
Abstract
The persistence of photoresist residues from microfabrication procedures causes significant obstacles in the technological advancement of graphene-based electronic devices. These residues induce undesired chemical doping effects, diminish carrier mobility, and deteriorate the signal-to-noise ratio, making them critical in certain contexts, including sensing and electrical recording applications. In graphene solution-gated field-effect transistors (gSGFETs), the presence of polymer contaminants makes it difficult to perform precise electrical measurements, introducing response variability and calibration challenges. Given the absence of viable short to midterm alternatives to polymer-intensive microfabrication techniques, a postpatterning treatment involving THF and ethanol solvents was evaluated, with ethanol being the most effective, environmentally sustainable, and safe method for residue removal. Employing a comprehensive analysis with XPS, AFM, and Raman spectroscopy, together with electrical characterization, we investigated the influence of residual polymers on graphene surface properties and transistor functionality. Ethanol treatment exhibited a pronounced enhancement in gSGFET performance, as evidenced by a shift in the charge neutrality point and reduced dispersion. This systematic cleaning methodology holds the potential to improve the reproducibility and precision in the manufacturing of graphene devices. Particularly, by using ethanol for residue removal, we align our methodology with the principles of green chemistry, minimizing environmental impact while advancing diverse graphene technology applications.
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Affiliation(s)
- Juan Pedro Merino
- Center
for Cooperative Research in Biomaterials (CIC biomaGUNE), Basque Research and Technology Alliance (BRTA), Paseo de Miramon 194, Donostia-San Sebastián 20014, Spain
| | - Sergi Brosel-Oliu
- Institute
of Microelectronics of Barcelona (IMB-CNM, CSIC), Campus UAB, Bellaterra 08193, Spain
| | - Gemma Rius
- Institute
of Microelectronics of Barcelona (IMB-CNM, CSIC), Campus UAB, Bellaterra 08193, Spain
| | - Xavi Illa
- Institute
of Microelectronics of Barcelona (IMB-CNM, CSIC), Campus UAB, Bellaterra 08193, Spain
- Centro
de Investigación Biomédica en Red de Bioingeniería,
Biomateriales y Nanomedicina, Instituto
de Salud Carlos III, Madrid 28029, Spain
| | - Manuel Vázquez Sulleiro
- Department
of Chemical and Pharmaceutical Sciences, University of Trieste, Via L. Giorgieri 1, Trieste 34127, Italy
- Universidade
da Coruña, CICA − Centro Interdisciplinar de Química
e Bioloxía, Rúa as Carballeiras, A Coruña 15071, Spain
| | - Elena Del Corro
- Catalan
Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST,
Campus UAB, Bellaterra, Barcelona 08193, Spain
| | - Eduard Masvidal-Codina
- Institute
of Microelectronics of Barcelona (IMB-CNM, CSIC), Campus UAB, Bellaterra 08193, Spain
- Centro
de Investigación Biomédica en Red de Bioingeniería,
Biomateriales y Nanomedicina, Instituto
de Salud Carlos III, Madrid 28029, Spain
- Catalan
Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST,
Campus UAB, Bellaterra, Barcelona 08193, Spain
| | - Andrea Bonaccini Calia
- Catalan
Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST,
Campus UAB, Bellaterra, Barcelona 08193, Spain
| | - Jose Antonio Garrido
- Catalan
Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST,
Campus UAB, Bellaterra, Barcelona 08193, Spain
- ICREA
Pg, Barcelona 08010, Spain
| | - Rosa Villa
- Institute
of Microelectronics of Barcelona (IMB-CNM, CSIC), Campus UAB, Bellaterra 08193, Spain
- Centro
de Investigación Biomédica en Red de Bioingeniería,
Biomateriales y Nanomedicina, Instituto
de Salud Carlos III, Madrid 28029, Spain
| | - Anton Guimerà-Brunet
- Institute
of Microelectronics of Barcelona (IMB-CNM, CSIC), Campus UAB, Bellaterra 08193, Spain
- Centro
de Investigación Biomédica en Red de Bioingeniería,
Biomateriales y Nanomedicina, Instituto
de Salud Carlos III, Madrid 28029, Spain
| | - Maurizio Prato
- Center
for Cooperative Research in Biomaterials (CIC biomaGUNE), Basque Research and Technology Alliance (BRTA), Paseo de Miramon 194, Donostia-San Sebastián 20014, Spain
- Department
of Chemical and Pharmaceutical Sciences, University of Trieste, Via L. Giorgieri 1, Trieste 34127, Italy
- ICREA
Pg, Barcelona 08010, Spain
- Ikerbasque,
Basque Foundation for Science, Bilbao 48013, Spain
| | - Alejandro Criado
- Universidade
da Coruña, CICA − Centro Interdisciplinar de Química
e Bioloxía, Rúa as Carballeiras, A Coruña 15071, Spain
| | - Elisabet Prats-Alfonso
- Institute
of Microelectronics of Barcelona (IMB-CNM, CSIC), Campus UAB, Bellaterra 08193, Spain
- Centro
de Investigación Biomédica en Red de Bioingeniería,
Biomateriales y Nanomedicina, Instituto
de Salud Carlos III, Madrid 28029, Spain
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3
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Muñoz R, León-Boigues L, López-Elvira E, Munuera C, Vázquez L, Mompeán F, Martín-Gago JÁ, Palacio I, García-Hernández M. Acrylates Polymerization on Covalent Plasma-Assisted Functionalized Graphene: A Route to Synthesize Hybrid Functional Materials. ACS APPLIED MATERIALS & INTERFACES 2023; 15:46171-46180. [PMID: 37738025 PMCID: PMC10561134 DOI: 10.1021/acsami.3c07200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 09/13/2023] [Indexed: 09/23/2023]
Abstract
The modification of the surface properties of graphene with polymers provides a method for expanding its scope into new applications as a hybrid material. Unfortunately, the chemical inertness of graphene hinders the covalent functionalization required to build them up. Developing new strategies to enhance the graphene chemical activity for efficient and stable functionalization, while preserving its electronic properties, is a major challenge. We here devise a covalent functionalization method that is clean, reproducible, scalable, and technologically relevant for the synthesis of a large-scale, substrate-supported graphene-polymer hybrid material. In a first step, hydrogen-assisted plasma activation of p-aminophenol (p-AP) linker molecules produces their stable and covalent attachment to large-area graphene. Second, an in situ radical polymerization reaction of 2-hydroxyethyl acrylate (HEA) is carried out on the functionalized surface, leading to a graphene-polymer hybrid functional material. The functionalization with a hydrophilic and soft polymer modifies the hydrophobicity of graphene and might enhance its biocompatibility. We have characterized these hybrid materials by atomic force microscopy (AFM), X-Ray photoelectron spectroscopy (XPS) and Raman spectroscopy and studied their electrical response, confirming that the graphene/p-AP/PHEA architecture is anchored covalently by the sp3 hybridization and controlled polymerization reaction on graphene, retaining its suitable electronic properties. Among all the possibilities, we assess the proof of concept of this graphene-based hybrid platform as a humidity sensor. An enhanced sensitivity is obtained in comparison with pristine graphene and related materials. This functional nanoarchitecture and the two-step strategy open up future potential applications in sensors, biomaterials, or biotechnology fields.
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Affiliation(s)
- Roberto Muñoz
- Instituto
de Ciencia de Materiales de Madrid (ICMM), CSIC, Sor Juana Inés de la Cruz 3, Madrid E-28049, Spain
| | - Laia León-Boigues
- Instituto
de Ciencia de Materiales de Madrid (ICMM), CSIC, Sor Juana Inés de la Cruz 3, Madrid E-28049, Spain
- Universidad
Complutense de Madrid, Madrid E-28040, Spain
| | - Elena López-Elvira
- Instituto
de Ciencia de Materiales de Madrid (ICMM), CSIC, Sor Juana Inés de la Cruz 3, Madrid E-28049, Spain
| | - Carmen Munuera
- Instituto
de Ciencia de Materiales de Madrid (ICMM), CSIC, Sor Juana Inés de la Cruz 3, Madrid E-28049, Spain
| | - Luis Vázquez
- Instituto
de Ciencia de Materiales de Madrid (ICMM), CSIC, Sor Juana Inés de la Cruz 3, Madrid E-28049, Spain
| | - Federico Mompeán
- Instituto
de Ciencia de Materiales de Madrid (ICMM), CSIC, Sor Juana Inés de la Cruz 3, Madrid E-28049, Spain
| | - José Ángel Martín-Gago
- Instituto
de Ciencia de Materiales de Madrid (ICMM), CSIC, Sor Juana Inés de la Cruz 3, Madrid E-28049, Spain
| | - Irene Palacio
- Instituto
de Ciencia de Materiales de Madrid (ICMM), CSIC, Sor Juana Inés de la Cruz 3, Madrid E-28049, Spain
| | - Mar García-Hernández
- Instituto
de Ciencia de Materiales de Madrid (ICMM), CSIC, Sor Juana Inés de la Cruz 3, Madrid E-28049, Spain
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4
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Palacio I, Moreno M, Náñez A, Purwidyantri A, Domingues T, Cabral PD, Borme J, Marciello M, Mendieta-Moreno JI, Torres-Vázquez B, Martínez JI, López MF, García-Hernández M, Vázquez L, Jelínek P, Alpuim P, Briones C, Martín-Gago JÁ. Attomolar detection of hepatitis C virus core protein powered by molecular antenna-like effect in a graphene field-effect aptasensor. Biosens Bioelectron 2023; 222:115006. [PMID: 36538869 DOI: 10.1016/j.bios.2022.115006] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Revised: 11/23/2022] [Accepted: 12/09/2022] [Indexed: 12/14/2022]
Abstract
Biosensors based on graphene field-effect transistors have become a promising tool for detecting a broad range of analytes. However, their performance is substantially affected by the functionalization protocol. In this work, we use a controlled in-vacuum physical method for the covalent functionalization of graphene to construct ultrasensitive aptamer-based biosensors (aptasensors) able to detect hepatitis C virus core protein. These devices are highly specific and robust, achieving attomolar detection of the viral protein in human blood plasma. Such an improved sensitivity is rationalized by theoretical calculations showing that induced polarization at the graphene interface, caused by the proximity of covalently bound molecular probe, modulates the charge balance at the graphene/aptamer interface. This charge balance causes a net shift of the Dirac cone providing enhanced sensitivity for the attomolar detection of the target proteins. Such an unexpected effect paves the way for using this kind of graphene-based functionalized platforms for ultrasensitive and real-time diagnostics of different diseases.
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Affiliation(s)
- Irene Palacio
- Institute of Material Science of Madrid (ICMM-CSIC), C/Sor Juana Inés de La Cruz 3, 28049, Madrid, Spain.
| | - Miguel Moreno
- Centro de Astrobiología (CAB, INTA-CSIC), 28850, Torrejón de Ardoz, Madrid, Spain
| | - Almudena Náñez
- Centro de Astrobiología (CAB, INTA-CSIC), 28850, Torrejón de Ardoz, Madrid, Spain
| | - Agnes Purwidyantri
- International Iberian Nanotechnology Laboratory (INL), 4715-330, Braga, Portugal
| | - Telma Domingues
- International Iberian Nanotechnology Laboratory (INL), 4715-330, Braga, Portugal; Centro de Física das Universidades do Minho e Porto (CF-UM-UP), Universidade do Minho, 4710-057, Braga, Portugal
| | - Patrícia D Cabral
- International Iberian Nanotechnology Laboratory (INL), 4715-330, Braga, Portugal; Centro de Física das Universidades do Minho e Porto (CF-UM-UP), Universidade do Minho, 4710-057, Braga, Portugal
| | - Jérôme Borme
- International Iberian Nanotechnology Laboratory (INL), 4715-330, Braga, Portugal
| | - Marzia Marciello
- Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Complutense University (UCM), Plaza Ramón y Cajal, 28040, Madrid, Spain
| | | | - Beatriz Torres-Vázquez
- Centro de Astrobiología (CAB, INTA-CSIC), 28850, Torrejón de Ardoz, Madrid, Spain; Universidad de Alcalá, Facultad de Medicina, Madrid, Spain
| | - José Ignacio Martínez
- Institute of Material Science of Madrid (ICMM-CSIC), C/Sor Juana Inés de La Cruz 3, 28049, Madrid, Spain
| | - María Francisca López
- Institute of Material Science of Madrid (ICMM-CSIC), C/Sor Juana Inés de La Cruz 3, 28049, Madrid, Spain
| | - Mar García-Hernández
- Institute of Material Science of Madrid (ICMM-CSIC), C/Sor Juana Inés de La Cruz 3, 28049, Madrid, Spain
| | - Luis Vázquez
- Institute of Material Science of Madrid (ICMM-CSIC), C/Sor Juana Inés de La Cruz 3, 28049, Madrid, Spain
| | - Pavel Jelínek
- Institute of Physics, Czech Academy of Sciences, 16200, Prague, Czech Republic
| | - Pedro Alpuim
- International Iberian Nanotechnology Laboratory (INL), 4715-330, Braga, Portugal; Centro de Física das Universidades do Minho e Porto (CF-UM-UP), Universidade do Minho, 4710-057, Braga, Portugal.
| | - Carlos Briones
- Centro de Astrobiología (CAB, INTA-CSIC), 28850, Torrejón de Ardoz, Madrid, Spain; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y digestivas (CIBERehd), Instituto de Salud Carlos III, Madrid, Spain.
| | - José Ángel Martín-Gago
- Institute of Material Science of Madrid (ICMM-CSIC), C/Sor Juana Inés de La Cruz 3, 28049, Madrid, Spain.
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5
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Abrantes M, Rodrigues D, Domingues T, Nemala SS, Monteiro P, Borme J, Alpuim P, Jacinto L. Ultrasensitive dopamine detection with graphene aptasensor multitransistor arrays. J Nanobiotechnology 2022; 20:495. [DOI: 10.1186/s12951-022-01695-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 11/01/2022] [Indexed: 11/26/2022] Open
Abstract
AbstractDetecting physiological levels of neurotransmitters in biological samples can advance our understanding of brain disorders and lead to improved diagnostics and therapeutics. However, neurotransmitter sensors for real-world applications must reliably detect low concentrations of target analytes from small volume working samples. Herein, a platform for robust and ultrasensitive detection of dopamine, an essential neurotransmitter that underlies several brain disorders, based on graphene multitransistor arrays (gMTAs) functionalized with a selective DNA aptamer is presented. High-yield scalable methodologies optimized at the wafer level were employed to integrate multiple graphene transistors on small-size chips (4.5 × 4.5 mm). The multiple sensor array configuration permits independent and simultaneous replicate measurements of the same sample that produce robust average data, reducing sources of measurement variability. This procedure allowed sensitive and reproducible dopamine detection in ultra-low concentrations from small volume samples across physiological buffers and high ionic strength complex biological samples. The obtained limit-of-detection was 1 aM (10–18) with dynamic detection ranges spanning 10 orders of magnitude up to 100 µM (10–8), and a 22 mV/decade peak sensitivity in artificial cerebral spinal fluid. Dopamine detection in dopamine-depleted brain homogenates spiked with dopamine was also possible with a LOD of 1 aM, overcoming sensitivity losses typically observed in ion-sensitive sensors in complex biological samples. Furthermore, we show that our gMTAs platform can detect minimal changes in dopamine concentrations in small working volume samples (2 µL) of cerebral spinal fluid samples obtained from a mouse model of Parkinson’s Disease. The platform presented in this work can lead the way to graphene-based neurotransmitter sensors suitable for real-world academic and pre-clinical pharmaceutical research as well as clinical diagnosis.
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Lozano Chamizo L, Luengo Morato Y, Ovejero Paredes K, Contreras Caceres R, Filice M, Marciello M. Ionotropic Gelation-Based Synthesis of Chitosan-Metal Hybrid Nanoparticles Showing Combined Antimicrobial and Tissue Regenerative Activities. Polymers (Basel) 2021; 13:3910. [PMID: 34833209 PMCID: PMC8618652 DOI: 10.3390/polym13223910] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Revised: 10/29/2021] [Accepted: 11/08/2021] [Indexed: 12/14/2022] Open
Abstract
The treatment of skin wounds poses significant clinical challenges, including the risk of bacterial infection. In particular due to its antimicrobial and tissue regeneration abilities chitosan (a polymeric biomaterial obtained by the deacetylation of chitin) has received extensive attention for its effectiveness in promoting skin wound repair. On the other hand, due to their intrinsic characteristics, metal nanoparticles (e.g., silver (Ag), gold (Au) or iron oxide (Fe3O4)) have demonstrated therapeutic properties potentially useful in the field of skin care. Therefore, the combination of these two promising materials (chitosan plus metal oxide NPs) could permit the achievement of a promising nanohybrid with enhanced properties that could be applied in advanced skin treatment. In this work, we have optimized the synthesis protocol of chitosan/metal hybrid nanoparticles by means of a straightforward synthetic method, ionotropic gelation, which presents a wide set of advantages. The synthesized hybrid NPs have undergone to a full physicochemical characterization. After that, the in vitro antibacterial and tissue regenerative activities of the achieved hybrids have been assessed in comparison to their individual constituent. As result, we have demonstrated the synergistic antibacterial plus the tissue regeneration enhancement of these nanohybrids as a consequence of the fusion between chitosan and metallic nanoparticles, especially in the case of chitosan/Fe3O4 hybrid nanoparticles.
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Affiliation(s)
- Laura Lozano Chamizo
- Nanobiotechnology for Life Sciences Laboratory, Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Universidad Complutense de Madrid (UCM), Plaza Ramón y Cajal s/n, 28040 Madrid, Spain; (L.L.C.); (Y.L.M.); (K.O.P.)
- Microscopy and Dynamic Imaging Unit, Fundación Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Calle Melchor Fernández Almagro 3, 28029 Madrid, Spain
- Atrys Health, 28001 Madrid, Spain
| | - Yurena Luengo Morato
- Nanobiotechnology for Life Sciences Laboratory, Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Universidad Complutense de Madrid (UCM), Plaza Ramón y Cajal s/n, 28040 Madrid, Spain; (L.L.C.); (Y.L.M.); (K.O.P.)
| | - Karina Ovejero Paredes
- Nanobiotechnology for Life Sciences Laboratory, Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Universidad Complutense de Madrid (UCM), Plaza Ramón y Cajal s/n, 28040 Madrid, Spain; (L.L.C.); (Y.L.M.); (K.O.P.)
- Microscopy and Dynamic Imaging Unit, Fundación Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Calle Melchor Fernández Almagro 3, 28029 Madrid, Spain
| | - Rafael Contreras Caceres
- Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Universidad Complutense de Madrid (UCM), Plaza Ramón y Cajal s/n, 28040 Madrid, Spain;
| | - Marco Filice
- Nanobiotechnology for Life Sciences Laboratory, Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Universidad Complutense de Madrid (UCM), Plaza Ramón y Cajal s/n, 28040 Madrid, Spain; (L.L.C.); (Y.L.M.); (K.O.P.)
- Microscopy and Dynamic Imaging Unit, Fundación Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Calle Melchor Fernández Almagro 3, 28029 Madrid, Spain
| | - Marzia Marciello
- Nanobiotechnology for Life Sciences Laboratory, Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Universidad Complutense de Madrid (UCM), Plaza Ramón y Cajal s/n, 28040 Madrid, Spain; (L.L.C.); (Y.L.M.); (K.O.P.)
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Fairén AG, Gómez-Elvira J, Briones C, Prieto-Ballesteros O, Rodríguez-Manfredi JA, López Heredero R, Belenguer T, Moral AG, Moreno-Paz M, Parro V. The Complex Molecules Detector (CMOLD): A Fluidic-Based Instrument Suite to Search for (Bio)chemical Complexity on Mars and Icy Moons. ASTROBIOLOGY 2020; 20:1076-1096. [PMID: 32856927 PMCID: PMC7116096 DOI: 10.1089/ast.2019.2167] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2019] [Accepted: 06/01/2020] [Indexed: 06/11/2023]
Abstract
Organic chemistry is ubiquitous in the Solar System, and both Mars and a number of icy satellites of the outer Solar System show substantial promise for having hosted or hosting life. Here, we propose a novel astrobiologically focused instrument suite that could be included as scientific payload in future missions to Mars or the icy moons: the Complex Molecules Detector, or CMOLD. CMOLD is devoted to determining different levels of prebiotic/biotic chemical and structural targets following a chemically general approach (i.e., valid for both terrestrial and nonterrestrial life), as well as their compatibility with terrestrial life. CMOLD is based on a microfluidic block that distributes a liquid suspension sample to three instruments by using complementary technologies: (1) novel microscopic techniques for identifying ultrastructures and cell-like morphologies, (2) Raman spectroscopy for detecting universal intramolecular complexity that leads to biochemical functionality, and (3) bioaffinity-based systems (including antibodies and aptamers as capture probes) for finding life-related and nonlife-related molecular structures. We highlight our current developments to make this type of instruments flight-ready for upcoming Mars missions: the Raman spectrometer included in the science payload of the ESAs Rosalind Franklin rover (Raman Laser Spectrometer instrument) to be launched in 2022, and the biomarker detector that was included as payload in the NASA Icebreaker lander mission proposal (SOLID instrument). CMOLD is a robust solution that builds on the combination of three complementary, existing techniques to cover a wide spectrum of targets in the search for (bio)chemical complexity in the Solar System.
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Affiliation(s)
- Alberto G. Fairén
- Centro de Astrobiología (CSIC-INTA), Madrid, Spain
- Department of Astronomy, Cornell University, Ithaca New York, USA
| | - Javier Gómez-Elvira
- Payload & Space Science Department, Instituto Nacional de Técnica Aeroespacial (INTA), Madrid, Spain
| | | | | | | | - Raquel López Heredero
- Payload & Space Science Department, Instituto Nacional de Técnica Aeroespacial (INTA), Madrid, Spain
| | - Tomás Belenguer
- Payload & Space Science Department, Instituto Nacional de Técnica Aeroespacial (INTA), Madrid, Spain
| | - Andoni G. Moral
- Payload & Space Science Department, Instituto Nacional de Técnica Aeroespacial (INTA), Madrid, Spain
| | | | - Víctor Parro
- Centro de Astrobiología (CSIC-INTA), Madrid, Spain
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8
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Moreno M, Fernández-Algar M, Fernández-Chamorro J, Ramajo J, Martínez-Salas E, Briones C. A Combined ELONA-(RT)qPCR Approach for Characterizing DNA and RNA Aptamers Selected against PCBP-2. Molecules 2019; 24:molecules24071213. [PMID: 30925703 PMCID: PMC6480920 DOI: 10.3390/molecules24071213] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Revised: 03/24/2019] [Accepted: 03/26/2019] [Indexed: 11/21/2022] Open
Abstract
Improvements in Systematic Evolution of Ligands by EXponential enrichment (SELEX) technology and DNA sequencing methods have led to the identification of a large number of active nucleic acid molecules after any aptamer selection experiment. As a result, the search for the fittest aptamers has become a laborious and time-consuming task. Herein, we present an optimized approach for the label-free characterization of DNA and RNA aptamers in parallel. The developed method consists in an Enzyme-Linked OligoNucleotide Assay (ELONA) coupled to either real-time quantitative PCR (qPCR, for DNA aptamers) or reverse transcription qPCR (RTqPCR, for RNA aptamers), which allows the detection of aptamer-target interactions in the high femtomolar range. We have applied this methodology to the affinity analysis of DNA and RNA aptamers selected against the poly(C)-binding protein 2 (PCBP-2). In addition, we have used ELONA-(RT)qPCR to quantify the dissociation constant (Kd) and maximum binding capacity (Bmax) of 16 high affinity DNA and RNA aptamers. The Kd values of the high affinity DNA aptamers were compared to those derived from colorimetric ELONA performed in parallel. Additionally, Electrophoretic Mobility Shift Assays (EMSA) were used to confirm the binding of representative PCBP-2-specific RNA aptamers in solution. We propose this ELONA-(RT)qPCR approach as a general strategy for aptamer characterization, with a broad applicability in biotechnology and biomedicine.
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Affiliation(s)
- Miguel Moreno
- Laboratory of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, 28850 Madrid, Spain.
| | - María Fernández-Algar
- Laboratory of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, 28850 Madrid, Spain.
| | | | - Jorge Ramajo
- Centro de Biología Molecular "Severo Ochoa" (CSIC-UAM), 28049 Madrid, Spain.
| | | | - Carlos Briones
- Laboratory of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, 28850 Madrid, Spain.
- Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029 Madrid, Spain.
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